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At least 775 records · Page 43Linked to original sources
USGS2015

Lithobates sylvaticus (wood frog). Habitat use.

Lithobates sylvaticus is the second most widely distributed anuran in North America (Martof and Humphries 1959. Am. Midl. Nat. 61:350–389), and its habitat use reflects the environmental variation that exists across its geographic range (Semlitsch et al. 2009. BioScience 59:853–862). Although L. sylvaticus post-breeding habitat selection has been described in Missouri (Rittenhouse and Semlitsch 2007. J. Herpetol. 41:645–653) and Maine (Baldwin et al. 2006. J. Herpetol. 40:442–453; Blomquist and Hunter 2010. Ecoscience 17:251–264), these studies did not report the species’ use of glacial erratics, or boulders. We conducted our study in Maine’s Nahmakanta Public Reserved Land (45.68210°N, 69.12940°W, WGS84; 407–530 m elev.), which is located in the Quebec/New England Boundary Mountains ecoregion.

Maine↗
USGS2005

Native fishes of the Sacramento-San Joaquin drainage, California: A history of decline

In this paper, we review information regarding the status of the native fishes of the combined Sacramento River and San Joaquin River drainages (hereinafter the "Sacramento-San Joaquin drainage") and the factors associated with their declines. The Sacramento-San Joaquin drainage is the center of fish evolution in California, giving rise to 17 endemic species of a total native fish fauna of 28 species. Rapid changes in land use and water use beginning with the Gold Rush in the 1850s and continuing to the present have resulted in the extinction, extirpation, and reduction in range and abundance of the native fishes. Multiple factors are associated with the declines of native fishes, including habitat alteration and loss, water storage and diversion, flow alteration, water quality, and invasions of alien species. Although native fishes can be quite tolerant of stressful physical conditions, in some rivers of the drainage the physical habitat has been altered to the extent that it is now more suited for alien species. This interaction of environmental changes and invasions of alien species makes it difficult to predict the benefits of restoration efforts to native fishes. Possible effects of climate change on California's aquatic habitats add additional complexity to restoration of native fishes. Unless protection and restoration of native fishes is explicitly considered in future water management decisions, declines are likely to continue.

California↗
USGS2007

Natural gases in ground water near Tioga Junction, Tioga County, north-central Pennsylvania: Occurrence and use of isotopes to determine origins, 2005

In January 2001, State oil and gas inspectors noted bubbles of natural gas in well water during a complaint investigation near Tioga Junction, Tioga County, north-central Pa. By 2004, the gas occurrence in ground water and accumulation in homes was a safety concern; inspectors were taking action to plug abandoned gas wells and collect gas samples. The origins of the natural-gas problems in ground water were investigated by the U.S. Geological Survey, in cooperation with the Pennsylvania Department of Environmental Protection, in wells throughout an area of about 50 mi2, using compositional and isotopic characteristics of methane and ethane in gas and water wells. This report presents the results for gas-well and water-well samples collected from October 2004 to September 2005. Ground water for rural-domestic supply and other uses near Tioga Junction is from two aquifer systems in and adjacent to the Tioga River valley. An unconsolidated aquifer of outwash sand and gravel of Quaternary age underlies the main river valley and extends into the valleys of tributaries. Fine-grained lacustrine sediments separate shallow and deep water-bearing zones of the outwash. Outwash-aquifer wells are seldom deeper than 100 ft. The river-valley sediments and uplands adjacent to the valley are underlain by a fractured-bedrock aquifer in siliciclastic rocks of Paleozoic age. Most bedrock-aquifer wells produce water from the Lock Haven Formation at depths of 250 ft or less. A review of previous geologic investigations was used to establish the structural framework and identify four plausible origins for natural gas. The Sabinsville Anticline, trending southwest to northeast, is the major structural feature in the Devonian bedrock. The anticline, a structural trap for a reservoir of deep native gas in the Oriskany Sandstone (Devonian) (origin 1) at depths of about 3,900 ft, was explored and tapped by numerous wells from 1930-60. The gas reservoir in the vicinity of Tioga Junction, depleted of native gas, was converted to the Tioga gas-storage field for injection and withdrawal of non-native gases (origin 2). Devonian shale gas (shallow native gas) also has been reported in the area (origin 3). Gas might also originate from microbial degradation of buried organic material in the outwash deposits (origin 4). An inventory of combustible-gas concentrations in headspaces of water samples from 91 wells showed 49 wells had water containing combustible gases at volume fractions of 0.1 percent or more. Well depth was a factor in the observed occurrence of combustible gas for the 62 bedrock wells inventoried. As well-depth range increased from less than 50 ft to 51-150 ft to greater than 151 ft, the percentage of bedrock-aquifer wells with combustible gas increased. Wells with high concentrations of combustible gas occurred in clusters; the largest cluster was near the eastern boundary of the gas-storage field. A subsequent detailed gas-sampling effort focused on 39 water wells with the highest concentrations of combustible gas (12 representing the outwash aquifer and 27 from the bedrock aquifer) and 8 selected gas wells. Three wells producing native gas from the Oriskany Sandstone and five wells (two observation wells and three injection/withdrawal wells) with non-native gas from the gas-storage field were sampled twice. Chemical composition, stable carbon and hydrogen isotopes of methane (13CCH4 and DCH4), and stable carbon isotopes of ethane (13CC2H6) were analyzed. No samples could be collected to document the composition of microbial gas originating in the outwash deposits (outwash or 'drift' gas) or of native natural gas originating solely in Devonian shale at depths shallower than the Oriskany Sandstone, although two of the storage-field observation wells sampled reportedly yielded some Devonian shale gas. Literature values for outwash or 'drift' gas and Devonian shale gases were used to supplement the data collection. Non-native gases fr

Pennsylvania↗
USGS2020

Do empirical observations support commonly-held climate change range shift hypotheses? A systematic review protocol

Background Among the most widely anticipated climate-related impacts to biodiversity are geographic range shifts, whereby species shift their spatial distribution in response to changing climate conditions. In particular, a series of commonly articulated hypotheses have emerged: species are expected to shift their distributions to higher latitudes, greater elevations, and deeper depths in response to climate change, reflecting an underlying hypothesis that species will move to cooler locations to track spatial changes in the temperature of their current range. Yet, many species are not demonstrating range shifts consistent with these hypotheses. Resolving this discrepancy and providing effective explanations for the observed variability in species’ range shifts is urgently needed to help support a range of natural resource management decisions. Here, we propose a protocol to review the body of evidence for commonly-held climate change range shift hypotheses at the species level focusing on observed latitudinal, longitudinal, elevational, and depth shifts in response to temperature and precipitation changes. We aim to answer the question: what is the impact of anthropogenic climate change (specifically changes in temperature and precipitation) on species ranges? Methods In this review protocol, we propose to conduct a systematic search of literature from internet databases and search engines in English. Articles will be screened in a two-stage process (title/abstract and full text) to evaluate whether they meet a list of eligibility criteria (e.g., presents species-level data, compares >1 time period). Initial data coding and extraction will be completed by four reviewers and checked by a secondary reviewer from among our co-authors. We will perform a formal meta-analysis to document estimated effect size using the subset of available range-shift data expressed in distance per time (e.g., km/decade). We will also use multinomial logistic regression models to assess the probability that species are shifting in a direction that supports our hypotheses (i.e. towards higher latitudes, greater elevations, and deeper depths). We will account for study methodology as a potential source of variation.

Environmental Evidence↗
USGS2021

Consequences of changing water clarity on the fish and fisheries of the Laurentian Great Lakes

Human-driven environmental change underlies recent changes in water clarity in many of the world’s great lakes, yet our understanding of the consequences of these changes on the fish and fisheries they support remains incomplete. Herein, we offer a framework to organize current knowledge, guide future research, and help fisheries managers understand how water clarity can affect their valued populations. Emphasizing Laurentian Great Lakes findings where possible, we describe how changing water clarity can directly affect fish populations and communities by altering exposure to ultraviolet radiation, foraging success, predation risk, reproductive behavior, or territoriality. We also discuss how changing water clarity can affect fisheries harvest and assessment through effects on fisher behavior and sampling efficiency (i.e., catchability). Finally, we discuss whether changing water clarity can affect understudied aspects of fishery performance, including economic and community benefits. We conclude by identifying generalized predictions and discuss their implications for priority research questions for the Laurentian Great Lakes. Even though the motivation for this work was regional, the breadth of the review and generality of the framework are readily transferable to other freshwater and marine habitats.

Great Lakes↗
USGS2011

Improving our legacy: Incorporation of adaptive management into state wildlife action plans

The loss of biodiversity is a mounting concern, but despite numerous attempts there are few large scale conservation efforts that have proven successful in reversing current declines. Given the challenge of biodiversity conservation, there is a need to develop strategic conservation plans that address species declines even with the inherent uncertainty in managing multiple species in complex environments. In 2002, the State Wildlife Grant program was initiated to fulfill this need, and while not explicitly outlined by Congress follows the fundamental premise of adaptive management, 'Learning by doing'. When action is necessary, but basic biological information and an understanding of appropriate management strategies are lacking, adaptive management enables managers to be proactive in spite of uncertainty. However, regardless of the strengths of adaptive management, the development of an effective adaptive management framework is challenging. In a review of 53 State Wildlife Action Plans, I found a keen awareness by planners that adaptive management was an effective method for addressing biodiversity conservation, but the development and incorporation of explicit adaptive management approaches within each plan remained elusive. Only ???25% of the plans included a framework for how adaptive management would be implemented at the project level within their state. There was, however, considerable support across plans for further development and implementation of adaptive management. By furthering the incorporation of adaptive management principles in conservation plans and explicitly outlining the decision making process, states will be poised to meet the pending challenges to biodiversity conservation. ?? 2010 .

Journal of Environmental Management↗
USGS2016

Delta smelt: Life history and decline of a once abundant species in the San Francisco Estuary

This paper reviews what has been learned about Delta Smelt and its status since the publication of The State of Bay-Delta Science, 2008 (Healey et al. 2008). The Delta Smelt is endemic to the upper San Francisco Estuary. Much of its historic habitat is no longer available and remaining habitat is increasingly unable to sustain the population. As a listed species living in the central node of California’s water supply system, Delta Smelt has been the focus of a large research effort to understand causes of decline and identify ways to recover the species. Since 2008, a remarkable record of innovative research on Delta Smelt has been achieved, which is summarized here. Unfortunately, research has not prevented the smelt’s continued decline, which is the result of multiple, interacting factors. A major driver of decline is change to the Delta ecosystem from water exports, resulting in reduced outflows and high levels of entrainment in the large pumps of the South Delta. Invasions of alien species, encouraged by environmental change, have also played a contributing role in the decline. Severe drought effects have pushed Delta Smelt to record low levels in 2014–2015. The rapid decline of the species and failure of recovery efforts demonstrate an inability to manage the Delta for the “co-equal goals” of maintaining a healthy ecosystem and providing a reliable water supply for Californians. Diverse and substantial management actions are needed to preserve Delta Smelt.

California↗
USGS2001

Biological treatability and environmental impact of ozonation of spent reactive dyebaths

The effect of ozonation of spent reactive dyebaths on both subsequent biological wastewater treatment systems and ultimate aquatic toxicity of effluents from the wastewater treatment plant was determined. Actual spent dyebaths from a textile plant were ozonated to remove color. The ozonated and untreated control dyebaths were diluted to produce wastewaters similar in dissolved solids content to wastewaters typically discharged by a textile plant. These wastewaters were subjected to biological treatment, and effluent generated by the biological treatment was tested for toxicity to Ceriodaphnia dubia (C dubia). Higher reproduction in the ozonated wastewaters compared to those receiving only biological treatment suggested that ozonation of the spent dyebath tended to reduce the toxicity imparted by the wastewater after biological treatment.

AATCC Review↗
USGS2025

Lake Superior fish community and fisheries, 2001–2022: An era of stability

Lake Superior is the least anthropogenically impacted of the Laurentian Great Lakes ecosystems, yet dramatic changes to the fish community are evident. Previous published works chronicled those changes and the efforts to rehabilitate the fish community through the year 2000. Here, we review through the year 2022, where post-rehabilitation stability was driven by lean lake trout ( Salvelinus namaycush namaycush) as the most abundant piscivore in nearshore waters, siscowet lake trout ( Salvelinus namaycush siscowet) as the most abundant piscivore in offshore waters, and a healthy, intact assemblage of native prey species, which created ecological redundancies and helped stabilize the food web. Stocking of non-native salmonines was reduced 74%, and populations of Chinook salmon ( Oncorhynchus tshawytscha) and coho salmon ( Oncorhynchus kisutch) were maintained through natural reproduction. Despite reduced stocking, yield from recreational fisheries was stable. Likewise, developments in population modeling led to evaluations and refinement of management strategies that helped create stability for lake trout, lake whitefish ( Coregonus clupeaformis ), and cisco ( Coregonus artedi ) fisheries. With lake trout rehabilitation achieved, focus shifted toward rehabilitation of native brook trout ( Salvelinus fontinalis ), lake sturgeon ( Acipenser fulvescens ), and walleye ( Sander vitreus ). Despite continued control efforts, sea lamprey ( Petromyzon marinus ) abundance increased considerably, and estimates of fish killed by lampreys averaged 2.65 million kg annually. Environmental changes have benefited sea lampreys and fostered thermal habitats more suitable to non-native organisms, posing new challenges for managers and researchers. Nevertheless, the post-rehabilitation stability in the contemporary fish community will help provide resilience to future perturbations in the ecosystem.

Lake Superior↗
USGS1989

Streamside habitats in southern forested wetlands: Their role and implications for management

The value of streamside forests to fish and wildlife and the influence of forest management on their value have been recognized in a general sense for decades. However, in today’s climate of increasing environmental regulation and intensive forest management, there is need for more detailed understanding of the value of streamside forests to fish and wildlife. Dickson and Huntley (1987:38) described the problem well when they wrote that “quantitative data on the effects of riparian zones on wildlife populations are insufficient to enable wildlife managers to justify the retention of riparian zones in land-use plans on a biological and economical basis.” Due in large part to the passage of water pollution control legislation, as well as legislation mandating multiple-use management in our national forests, progress is being made. During the last l&15 years, a great deal of research has been directed at understanding the value and appropriate management of the riparian zone (Brouha and Parsons 1985). The vast majority of research on riparian habitats has been conducted in western forests and/or narrow zones in otherwise upland areas. Also, much of the work done in southern forested wetlands has applied to entire floodplain forests. In this paper, we review the literature on streamside habitats within southern forested wetlands and, for reasons described in the next section, we make a distinction between streamside forests and floodplain (or riparian) forests. We also discuss in less detail the value of streamside habitats within other southern forest types, such as pine or mixed pine-hardwood.

General Technical Report↗
USGS2007

Sampling and monitoring for closure

An important aspect of planning a new mine or mine expansion within the modern regulatory framework is to design for ultimate closure. Sampling and monitoring for closure is a form of environmental risk management. By implementing a sampling and monitoring program early in the life of the mining operation, major costs can be avoided or minimized. The costs for treating mine drainage in perpetuity are staggering, especially if they are unanticipated. The Metal Mining Sector of the Acid Drainage Technology Initiative (ADTI-MMS), a cooperative government-industry-academia organization, was established to address drainage-quality technologies of metal mining and metallurgical operations. ADTI-MMS recommends that sampling and monitoring programs consider the entire mine-life cycle and that data needed for closure of an operation be collected from exploration through postclosure.

Reviews in Engineering Geology↗
USGS2013

Overview of groundwater quality in the Piceance Basin, western Colorado, 1946--2009

Groundwater-quality data from public and private sources for the period 1946 to 2009 were compiled and put into a common data repository for the Piceance Basin. The data repository is available on the web at http://rmgsc.cr.usgs.gov/cwqdr/Piceance/index.shtml. A subset of groundwater-quality data from the repository was compiled, reviewed, and checked for quality assurance for this report. The resulting dataset consists of the most recently collected sample from 1,545 wells, 1,007 (65 percent) of which were domestic wells. From those samples, the following constituents were selected for presentation in this report: dissolved oxygen, dissolved solids, pH, major ions (chloride, sulfate, fluoride), trace elements (arsenic, barium, iron, manganese, selenium), nitrate, benzene, toluene, ethylbenzene, xylene, methane, and the stable isotopic compositions of water and methane. Some portion of recharge to most of the wells for which data were available was derived from precipitation (most likely snowmelt), as indicated by δ2H [H2O] and δ18O[H2O] values that plot along the Global Meteoric Water Line and near the values for snow samples collected in the study area. Ninety-three percent of the samples were oxic, on the basis of concentrations of dissolved oxygen that were greater than or equal to 0.5 milligrams per liter. Concentration data were compared with primary and secondary drinking-water standards established by the U.S. Environmental Protection Agency. Constituents that exceeded the primary standards were arsenic (13 percent), selenium (9.2 percent), fluoride (8.4 percent), barium (4.1 percent), nitrate (1.6 percent), and benzene (0.6 percent). Concentrations of toluene, xylenes, and ethylbenzene did not exceed standards in any samples. Constituents that exceeded the secondary standard were dissolved solids (72 percent), sulfate (37 percent), manganese (21 percent), iron (16 percent), and chloride (10 percent). Drinking-water standards have not been established for methane, which was detected in 24 percent of samples. Methane concentrations were greater than or equal to 1 milligram per liter in 8.5 percent of samples. Methane isotopic data for samples collected primarily from domestic wells in Garfield County indicate that methane in samples with relative high methane concentrations were derived from both biogenic and thermogenic sources. Many of the constituents that exceeded standards, such as arsenic, fluoride, iron, and manganese, were derived from rock and sediment in aquifers. Elevated nitrate concentrations were most likely derived from human sources such as fertilizer and human or animal waste. Information about the geologic unit or aquifer in which a well was completed generally was not provided by data sources. However, limited data indicate that Quaternary deposits in Garfield and Mesa Counties, the Wasatch Formation in Garfield County, and the Green River Formation in Rio Blanco County had some of the highest median concentrations of selected constituents. Variations in concentration with depth could not be evaluated because of the general lack of well-depth and water-level data. Concentrations of several important constituents, such as arsenic, manganese, methane, and nitrate, were related to concentrations of dissolved oxygen. Concentrations of arsenic, manganese, and methane were significantly higher in groundwater with low dissolved-oxygen concentrations than in groundwater with high dissolved-oxygen concentrations. In contrast, concentrations of nitrate were significantly higher in groundwater with high dissolved-oxygen concentrations than in groundwater with low dissolved-oxygen concentrations. These results indicate that measurements of dissolved oxygen may be a useful indicator of groundwater vulnerability to some human-derived contaminants and enrichment from some natural constituents. Assessing such a large and diverse dataset as the one available through the repository poses unique challenges for reporting on groundwater quality in the study area. The repository contains data from several studies that differed widely in purpose and scope. In addition to this variability in available data, gaps exist spatially, temporally, and analytically in the repository. For example, groundwater-quality data in the repository were not evenly distributed throughout the study area. Several key water-quality constituents or indicators, such as dissolved oxygen, were underrepresented in the repository. Ancillary information, such as well depth, depth to water, and the geologic unit or aquifer in which a well was completed, was missing for more than 50 percent of samples. Future monitoring could avoid several limitations of the repository by making relatively minor changes to sample- collection and data-reporting protocols. Field measurements for dissolved oxygen could be added to sampling protocols, for example. Information on well construction and the geologic unit or aquifer in which a well was completed should be part of the water-quality dataset. Such changes would increase the comparability of data from different monitoring programs and also add value to each program individually and to that of the regional dataset as a whole. Other changes to monitoring programs could require greater resources, such as sampling for a basic set of constituents that is relevant to major water-quality issues in the regional study area. Creation of such a dataset for the regional study area would help to provide the kinds of information needed to characterize background conditions and the spatial and temporal variability in constituent concentrations associated with those conditions. Without such information, it is difficult to identify departures from background that might be associated with human activities.

Colorado↗
USGS2023

A review of geology and mining in the Marble Mountains, southeastern California

Mining in the Marble Mountains of southeastern California was active in the earliest 1900s and gradually declined to very few active mines by 1959. Most mining consisted of hard-rock prospects and mines, with a few soft-rock prospects and one mine. The Marble Mountains are a 10 km by 30 km, gently NE-dipping dipping structural block composed of Proterozoic plutonic and metamorphic rocks, Paleozoic sedimentary rocks, and Jurassic granitoids exposed along the western anti-dip slopes, and Miocene volcanic and sedimentary rocks exposed along the crest of the range and eastern dip slopes. Mineralization occurred in metamorphic aureoles of intrusions, along dikes, as contact metasomatic replacement bodies in carbonate rocks, or adjacent to or along thrust faults. Mineralization locally formed gold, copper, malachite, azurite, bornite, chalcopyrite, magnetite, specularite, limonite, quartz, epidote, actinolite, and garnet. Hard-rock prospects and mines are clustered into five locations. The mines are small open pits, a few consist of a shaft or two with a few adits, most are just a single shaft or adit. There are a few small open-pit marble mines, and one is an open pit fossil mine. Eight prospects were developed in the Miocene tuffaceous deposits; three in the northwest and five prospects, and a single adit, in the south. Most of the Marble Mountains are now in the Trilobite Wilderness or adjacent Areas of Critical Environmental Concern, and the area of the Golden Cycle district (Castle Mine area) and prospect areas in the southern part of the range are in the Mojave Trails National Monument. The Iron Hat mine, several nearby areas, and the Trilobite mine area are privately owned. No rock or mineral mines are currently active, but the Trilobite mine in the south end of the range is still open to the public.

California↗
USGS2017

Designing a global assessment of climate change on inland fishes and fisheries: knowns and needs

To date, there are few comprehensive assessments of how climate change affects inland finfish, fisheries, and aquaculture at a global scale, but one is necessary to identify research needs and commonalities across regions and to help guide decision making and funding priorities. Broadly, the consequences of climate change on inland fishes will impact global food security, the livelihoods of people who depend on inland capture and recreational fisheries. However, understanding how climate change will affect inland fishes and fisheries has lagged behind marine assessments. Building from a North American inland fisheries assessment, we convened an expert panel from seven countries to provide a first-step to a framework for determining how to approach an assessment of how climate change may affect inland fishes, capture fisheries, and aquaculture globally. Starting with the small group helped frame the key questions (e.g., who is the audience? What is the best approach and spatial scale?). Data gaps identified by the group include: the tolerances of inland fisheries to changes in temperature, stream flows, salinity, and other environmental factors linked to climate change, and the adaptive capacity of fishes and fisheries to adjust to these changes. These questions are difficult to address, but long-term and large-scale datasets are becoming more readily available as a means to test hypotheses related to climate change. We hope this perspective will help researchers and decision makers identify research priorities and provide a framework to help sustain inland fish populations and fisheries for the diversity of users around the globe.

Reviews in Fish Biology and Fisheries↗
USGS2001

Leaping lopsided: a review of the current hypotheses regarding etiologies of limb malformations in frogs

Recent progress in the investigation of limb malformations in free-living frogs has underlined the wide range in the types of limb malformations and the apparent spatiotemporal clustering of their occurrence. Here, we review the current understanding of normal and abnormal vertebrate limb development and regeneration and discuss some of the molecular events that may bring about limb malformation. Consideration of the differences between limb development and regeneration in amphibians has led us to the hypothesis that some of the observed limb malformations come about through misdirected regeneration. We report the results of a pilot study that supports this hypothesis. In this study, the distal aspect of the right hindlimb buds of X. laevis tadpoles was amputated at the pre-foot paddle stage. The tadpoles were raised in water from a pond in Minnesota at which 7% of surveyed newly metamorphosed feral frogs had malformations. Six percent (6 of 100) of the right limbs of the tadpoles raised in pond water developed abnormally. One truncated right limb was the only malformation in the control group, which was raised in dechlorinated municipal water. All unamputated limbs developed normally in both groups. Three major factors under consideration for effecting the limb malformations are discussed. These factors include environmental chemicals (primarily agrichemicals), encysted larvae (metacercariae) of trematode parasites, and increased levels of ultraviolet light. Emphasis is placed on the necessary intersection of environmental stressors and developmental events to bring about the specific malformations that are observed in free-living frog populations.

California, Maine, Minnesota, Quebec, Vermont↗
USGS2017

Bacteria versus selenium: A view from the inside out

Bacteria and selenium (Se) are closely interlinked as the element serves both essential nutrient requirements and energy generation functions. However, Se can also behave as a powerful toxicant for bacterial homeostasis. Conversely, bacteria play a tremendous role in the cycling of Se between different environmental compartments, and bacterial metabolism has been shown to participate to all valence state transformations undergone by Se in nature. Bacteria possess an extensive molecular repertoire for Se metabolism. At the end of the 1980s, a novel mode of anaerobic respiration based on Se oxyanions was experimentally documented for the first time. Following this discovery, specific enzymes capable of reducing Se oxyanions and harvesting energy were found in a number of anaerobic bacteria. The genes involved in the expression of these enzymes have later been identified and cloned. This iterative approach undertaken outside-in led to the understanding of the molecular mechanisms of Se transformations in bacteria. Based on the extensive knowledge accumulated over the years, we now have a full(er) view from the inside out , from DNA-encoding genes to enzymes and thermodynamics. Bacterial transformations of Se for assimilatory purposes have been the object of numerous studies predating the investigation of Se respiration. Remarkable contributions related to the understating of the molecular picture underlying seleno-amino acid biosynthesis are reviewed herein. Under certain circumstances, Se is a toxicant for bacterial metabolism and bacteria have evolved strategies to counteract this toxicity, most notably by the formation of elemental Se (nano)particles. Several biotechnological applications, such as the production of functional materials and the biofortification of crop species using Se-utilizing bacteria, are presented in this chapter.

Book chapter↗
USGS2021

Estimating age and growth of invasive sea lamprey: A review of approaches and investigation of a new method

We review recent advances in age and growth estimation of invasive sea lamprey ( Petromyzon marinus ) in the Great Lakes and present a more accurate method for growth estimation. To forecast growth and prioritize streams for control actions, sea lamprey managers currently use an average daily growth model. Here, a new linear model that included stream and lake as contributing variables was investigated and found to outperform the currently used growth model (roughly a 10 mm difference at age 1). Length-at-age of larvae between ages 1 and 4 were also best forecasted by a linear model with the predictor variables including growing degree days, stream, lake, and larval lamprey density. The model predicts that larval sea lamprey grow faster in warm streams with low densities of lamprey larvae. More accurate growth models could allow sea lamprey control managers to improve decisions concerning how sea lamprey control effort is allocated among streams, and could help inform broader modeling efforts evaluating the population demographics of a lake-wide populations exposed to varying control and environmental scenarios. Priority areas for research include investigating if temperatures have increased in sea lamprey-producing streams in response to climate change, using close-kin mark-recapture to mark family groups at age 1 to age large larvae and transformers years later, and determining if sex determination is environmentally mediated by larval growth and density.

Great Lakes↗
USGS2025

Developing a probabilistic tsunami hazard assessment framework for Pacific sources: USGS Powell Center meeting summary

Multi-organizational principal investigators formed a U.S. Geological Survey (USGS) Powell Center Working Group (WG), Tsunami Source Standardization for Hazards Mitigation in the United States, to develop a comprehensive series of sources capable of generating tsunamis that could impact U.S. state and territory coastal areas using probabilistic tsunami hazard analysis (PTHA). PTHA results are commonly used to provide consistent tsunami hazard information for use in engineering and risk assessment and, to a lesser extent, hazard response planning. Following an initial weeklong planning meeting in April 2018, designed to establish the WG’s scope, a series of weeklong meetings devoted to aspects of tsunami hazards placed emphasis on assessment of various tsunami sources, including subduction zones in Alaska, the Atlantic and Caribbean, Cascadia, and the Pacific Basin, as well as landslides in Alaska, the Atlantic, and the Caribbean. The final meeting in the series discussed tsunami sources from crustal faults. These meetings, each with a regional geographic focus, were designed to incorporate reviews and feedback from subject matter experts (SMEs) in academia, private industry, and federal, state, and local governmental organizations. Incorporating consensus from SMEs is important because the results derived from the tsunami source models will be used to inform the public about potential hazards from tsunamis related to safety concerns. This paper describes the USGS Powell Center meeting in March 2023, devoted specifically to developing a PTHA for tsunami sources in the Pacific Ocean Basin other than the Alaska–Aleutian and Cascadia subduction zones that were addressed during previous WG meetings.

Environmental & Engineering Geoscience↗