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USGS2005

Effects of landscape change on fish assemblage structure in a rapidly growing metropolitan area in North Carolina, USA

We evaluated a comprehensive set of natural and land-use attributes that represent the major facets of urban development at fish monitoring sites in the rapidly growing Raleigh-Durham, North Carolina metropolitan area. We used principal component and correlation analysis to obtain a nonredundant subset of variables that extracted most variation in the complete set. With this subset of variables, we assessed the effect of urban growth on fish assemblage structure. We evaluated variation in fish assemblage structure with nonmetric multidimensional scaling (NMDS). We used correlation analysis to identify the most important environmental and landscape variables associated with significant NMDS axes. The second NMDS axis is related to many indices of land-use/land-cover change and habitat. Significant correlations with proportion of largest forest patch to total patch size (r = -0.460, P < 0.01), diversity of patch types (r = 0.554, P < 0.001), and population density (r = 0.385, P < 0.05) helped identify NMDS axis 2 as a disturbance gradient. Positive and negative correlations between the abundance of redbreast sunfish Lepomis auritus and bluehead chub Nocomis leptocephalus, respectively, and NMDS axis 2 also were evident. The North Carolina index of biotic integrity and many of its component metrics were highly correlated with urbanization. These results indicate that aquatic ecosystem integrity would be optimized by a comprehensive integrated management strategy that includes the preservation of landscape function by maximizing the conservation of contiguous tracts of forested lands and vegetative cover in watersheds. ?? 2005 by the American Fisheries Society.

American Fisheries Society Symposium↗

USGS2003

Measurement of sedimentary interbed hydraulic properties and their hydrologic influence near the Idaho Nuclear Technology and Engineering Center at the Idaho National Engineering and Environmental Laboratory

Disposal of wastewater to unlined infiltration ponds near the Idaho Nuclear Technology and Engineering Center (INTEC), formerly known as the Idaho Chemical Processing Plant, at the Idaho National Engineering and Environmental Laboratory (INEEL) has resulted in the formation of perched water bodies in the unsaturated zone (Cecil and others, 1991). The unsaturated zone at INEEL comprises numerous basalt flows interbedded with thinner layers of coarse- to fine-grained sediments and perched ground-water zones exist at various depths associated with massive basalts, basalt-flow contacts, sedimentary interbeds, and sediment-basalt contacts. Perched ground water is believed to result from large infiltration events such as seasonal flow in the Big Lost River and wastewater discharge to infiltration ponds. Evidence from a large-scale tracer experiment conducted in 1999 near the Radioactive Waste Management Complex (RWMC), approximately 13 km from the INTEC, indicates that rapid lateral flow of perched water in the unsaturated zone may be an important factor in contaminant transport at the INEEL (Nimmo and others, 2002b). Because sedimentary interbeds, and possibly baked-zone alterations at sediment-basalt contacts (Cecil and other, 1991) play an important role in the generation of perched water it is important to assess the hydraulic properties of these units.

Idaho↗

USGS2009

Geographic variation in Bar-headed geese Anser indicus: connectivity of wintering and breeding grounds across a broad front

The connectivity and frequency of exchange between sub-populations of migratory birds is integral to understanding population dynamics over the entire species' range. True geese are highly philopatric and acquire lifetime mates during the winter, suggesting that the number of distinct sub-populations may be related to the number of distinct wintering areas. In the Bar-headed Goose Anser indicus, a species found exclusively in Central Asia, the connectivity between breeding and wintering areas is not well known. Their migration includes crossing a broad front of the Himalaya Cordillera, a significant barrier to migration for most birds. Many Bar-headed Geese fly to breeding areas on the Tibetan-Qinghai Plateau (TQP), the highest plateau in the world. From 2005-2008, 60 Bar-headed Geese were captured and marked with satellite transmitters in Nepal (n = 2), India (n = 6), China (n = 29), and Mongolia (n = 23) to examine their migration and distribution. Distinct differences were observed in their migration corridors and timing of movements, including an apparent leap-frog migration pattern for geese from Mongolia. Measurements of geese from Mongolia were larger than their counterparts from China, providing some evidence of morphological differences. Alteration of habitats in China, including the warming effects of climate change on glaciers increasing runoff to TQP wetlands, may be changing goose migration patterns and timing. With the exception of one individual, all geese from Qinghai Lake, China wintered in the southern TQP near Lhasa, and their increasing numbers in that region may be related to the effects of climate change and agricultural development. Thus, our findings document both morphological and geographical variation in sub-populations of Bar-headed Geese, but their resilience to environmental change may be lost if migratory short-stopping results in larger congregations restricted to a smaller number of wintering areas.

Wildfowl↗

USGS2000

Effects of contaminants in dredge material from the Lower Savannah River

Contaminants entering aquatic systems from agricultural, industrial, and municipal activities are generally sequestered in bottom sediments. The environmental significance of contaminants associated with sediments dredged from Savannah Harbor, Georgia, USA, are unknown. To evaluate potential effects of contaminants in river sediments and sediments dredged and stored in upland disposal areas on fish and wildlife species, solid-phase sediment and sediment pore water from Front River, Back River, an unnamed Tidal Creek on Back River, and Middle River of the distributary system of the lower Savannah River were tested for toxicity using the freshwater amphipod Hyalella azteca . In addition, bioaccumulation of metals from sediments collected from two dredge-disposal areas was determined using the freshwater oligochaete Lumbriculus variegatus . Livers from green-winged teals ( Anas crecca ) and lesser yellowlegs ( Tringa flavipes ) foraging in the dredge-spoil areas and raccoons ( Procyon lotor ) from the dredge-disposal/river area and an upland site were collected for metal analyses. Survival of H. azteca was not reduced in solid-phase sediment exposures, but was reduced in pore water from several locations receiving drainage from dredge-disposal areas. Basic water chemistry (ammonia, alkalinity, salinity) was responsible for the reduced survival at several sites, but PAHs, metals, and other unidentified factors were responsible at other sites. Metal residues in sediments from the Tidal Creek and Middle River reflected drainage or seepage from adjacent dredge-disposal areas, which could potentially reduce habitat quality in these areas. Trace metals increased in L. variegatus exposed in the laboratory to dredge-disposal sediments; As, Cu, Hg, Se, and Zn bioaccumulated to concentrations higher than those in the sediments. Certain metals (Cd, Hg, Mo, Se) were higher in livers of birds and raccoons than those in dredge-spoil sediments suggesting bioavailability. Cadmium, Ct, Hg, Pb, and Se in livers from raccoons collected near the river and dredge-disposal areas were significantly higher than those of raccoons from the upland control site. Evidence of bioaccumulation from laboratory and field evaluations and concentrations in sediments from dredge-disposal areas and river channels demonstrated that some metals in the dredge-disposal areas are mobile and biologically available. Drainage from dredge-disposal areas may be impacting habitat quality in the river, and fish and wildlife that feed and nest in the disposal area pm the lower Savannah River may be at risk from metal contamination.

Georgia, South Carolina↗

USGS1981

Reactor-released radionuclides in Susquehanna River sediments

Three Mile Island (TMI) and Peach Bottom (PB) reactors have introduced 137Cs, 134Cs, 60Co, 58Co and several other anthropogenic radionuclides into the lower Susquehanna River. Here we present the release history for these nuclides (Table 1) and radionuclide concentration data (Table 2) for sediment samples collected in the river and upper portions of the Chesapeake Bay (Fig. 1) within a few months after the 28 March 1979 loss-of-coolant-water problem at TMI. Although we found no evidence for nuclides characteristic of a ruptured fuel element, we did find nuclides characteristic of routine operations. Despite the TMI incident, more than 95% of the total 134Cs input to the Susquehanna has been a result of controlled low-level releases from the PB site. 134Cs activity released into the river is effectively trapped by sediments with the major zones of reactor-nuclide accumulation behind Conowingo Dam and in the upper portions of Chesapeake Bay. The reported distributions document the fate of reactor-released radionuclides and their extent of environmental contamination in the Susquehanna-Upper Chesapeake Bay System. ?? 1981 Nature Publishing Group.

Nature↗

USGS2013

Age and condition of juvenile catostomids in Clear Lake Reservoir, California

Executive Summary Although infrequent recruitment of new individuals into the adult spawning populations of Lost River suckers ( Deltistes luxatus ) and shortnose suckers ( Chasmistes brevirostris ) limits recovery of these species in Upper Klamath Lake, it is not clear that populations are recruitment limited in Clear Lake Reservoir (hereafter Clear Lake). Specifically, some evidence indicates that shortnose suckers may regularly recruit to the adult spawning population in Clear Lake. Therefore, a study of early life history patterns and recruitment dynamics in Clear Lake may lead to a better understanding of what is limiting recovery of suckers in both lakes. Adult suckers in Clear Lake migrate up Willow Creek and its tributaries to spawn in some years, but low flow in Willow Creek may inhibit spawning migrations in other years. It is unclear whether spawning is successful, larvae survive, or how frequently juveniles persist to adulthood. Environmental variables associated with successful spawning or young-of-year survival have not been identified, and early life history for these populations is poorly understood. The U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, initiated a study in 2011 to better understand juvenile sucker life history in Clear Lake, and to identify constraints in the early life history that may limit recruitment to the adult spawning populations. The relative weights of shortnose suckers from Clear Lake and Upper Klamath Lake were compared to examine differences in condition. However, it is unclear whether the disparity in relative weights between the populations reflects differences in condition, phenotype, or both. Approximately 80 percent of juvenile suckers in Clear Lake are shortnose suckers with some morphologic features similar to Klamath largescale suckers ( Catostomus snyderi ), whereas juvenile suckers in Upper Klamath Lake can be clearly classified as either shortnose or Lost River suckers. The presence of juvenile suckers age-3 and older indicate that production, larval survival, and juvenile survival are at least periodically sufficient to lead to recruitment into the adult population of shortnose suckers in Clear Lake.

California↗

USGS1998

The aquatic macrophyte seed bank in Lake Onalaska, Wisconsin

Submersed aquatic vegetation, dominated by Vallisneria americana Michx., declined dramatically in Lake Onalaska (Navigation Pool 7, on the Upper Mississippi River) following drought conditions in the late 1980s. Coinciding with the decline were marked increases in the abundance of Myriophyllum spicatum L., particularly in areas vacated by V. americana. Recent evidence indicates that much of the lake has remained unvegetated, but that since 1994, beds of V. americana have made a partial recovery. While the production of vegetative propagules may largely account for increases in populations of both species, the extent to which seed production may contribute to their expansion in the lake is unknown. To assess the germination potential and distribution of the aquatic macrophyte seed bank in Lake Onalaska, sediment cores (5 cm deep) were collected from 74 sampling sites injury 1996. Seedling emergence from sediments was observed in an environmental growth chamber operated at 25 C and a 14-hr photoperiod over a period of eight weeks. Fifteen species of aquatic macrophytes germinated in sediments from 55 sites. V. americana seedlings emerged from sediments from 36 sites throughout the lake, but were most prevalent in sediments collected within or downstream (within 250 m) of established V. americana beds. Seedlings of M. spicatum emerged from only two collected sediments that had supported this species in protected areas. These findings suggest that seed production may play a greater role in the dispersal of V. americana than M. spicatum, and further emphasize basic differences in their survival strategies, particularly in flowing water systems.

Journal of Aquatic Plant Management↗

USGS2024

Hyperspectral imaging predicts differences in carbon and nitrogen status among representative biocrust functional groups of the Colorado Plateau

Biological soil crusts (biocrusts) are widespread soil photosynthetic communities covering about 12% of Earth's land surface and play crucial roles in terrestrial carbon (C) and nitrogen (N) cycles, yet scalable quantifications of biocrusts and their biogeochemical contributions are notably lacking. While remote sensing has enormous potential to assess, scale, and contextualize biocrusts and their functions, the applicability of hyperspectral data in predicting C- and N-related biocrust traits remains largely unexplored. We address this issue by evaluating the potential of in situ hyperspectral data to predict C and N across a range of biocrust species and different environmental conditions. We found that in situ hyperspectral reflectance measurements can be used to predict biocrust tissue C/N ratios and N concentrations with relatively high accuracy but to a lesser extent for potential biocrust N2 fixation rates. Critical wavelength domains included the visible region of the spectrum from roughly 490–600 nm, which most effectively captured variations in biocrust tissue C, and the shortwave infrared region from 1,150 to 1,350 nm and 1,550–1,650 nm, which most effectively captured biocrust tissue N and N2 fixation potential. Finally, we provide evidence that multi- and hyperspectral missions with targeted band placement, such as the proposed 26-band Landsat Next, could be effective in predicting biocrust traits. This work provides a critical step in understanding how to apply data from new and upcoming satellite missions to the monitoring of biocrusts.

Utah↗

USGS1998

The aquatic macrophyte seed bank in Lake Onalaska, Wisconsin

Submersed aquatic vegetation, dominated by Vallisneria americana Michx., declined dramatically in Lake Onalaska (Navigation Pool 7, on the Upper Mississippi River) following drought conditions in the late 1980s. Coinciding with the decline were marked increases in the abundance of phyllum spicatum L., particularly in areas vacated by A. americana. Recent evidence indicates that much of the lake has remained unvegetated, but that since 1994, beds of V. americana have made a partial recovery. While the production of vegetative propagules may largely account for increases in populations of both species, the extent to which seed production may contribute to their expansion in the lake is unknown. To assess the germination potential and distribution of the aquatic macrophyte seed bank in Lake Onalaska, sediment cores (5 cm deep) were collected from 74 sampling sites in July 1996. Seedling emergence from sediments was observed in an environmental growth chamber operated at 25 C and a 14-hr photoperiod over a period of eight weeks. Fifteen species of aquatic macrophytes germinated in sediments from 55 sites. V. americana seedlings emerged from sediments from 36 sites throughout the lake, but were most prevalent in sediments collected within or downstream (within 250 m) of established V. americana beds. Seedlings of M. spicatum emerged from only two collected sediments that had supported this species in protected areas. These findings suggest that seed production may play a greater role in the dispersal of V. americana than M. spicatum, and further emphasize basic differences in their survival strategies, particularly in flowing water systems.

Journal of Aquatic Plant Management↗

USGS2023

Competition between dissolved organic matter and freshwater plankton control methylmercury isotope fractionation during uptake and photochemical demethylation

Isotope fractionation related to photochemical reactions and planktonic uptake at the base of the food web is a major uncertainty in the biological application of mercury (Hg) stable isotopes. In freshwater systems, it is unclear how competitive interactions among methylmercury (MeHg), dissolved organic matter (DOM), and phytoplankton govern the magnitude of mass-dependent and mass-independent fractionation. This study investigated how DOM alters rates of planktonic MeHg uptake and photodegradation and corresponding Hg isotope fractionation in the presence of freshwater phytoplankton species, Raphidocelis subcapitata . Outdoor sunlight exposure experiments utilizing R. subcapitata were performed in the presence of different DOM samples using environmentally relevant ratios of MeHg-DOM thiol groups. The extent of Δ 199 Hg in phytoplankton incubations (2.99‰ St. Louis River HPOA, 1.88‰ Lake Erie HPOA) was lower compared to paired abiotic control experiments (4.29 and 2.86‰, respectively) after ∼30 h of irradiation, resulting from cell shading or other limiting factors reducing the extent of photodemethylation. Although the Δ 199 Hg/Δ 201 Hg ratio was uniform across experiments (∼1.4), Δ 199 Hg/δ 202 Hg slopes varied dramatically (from −0.96 to 15.4) across incubations with R. subcapitata and DOM. In addition, no evidence of Hg isotope fractionation was observed within R. subcapitata cells. This study provides a refined examination of Hg isotope fractionation markers for key processes occurring in the lower food web prior to bioaccumulation, critical for accurately accounting for the photochemical processing of Hg isotopes across a wide spectrum of freshwater systems.

ACS Earth and Space Chemistry↗

USGS2024

Origin stories: How does learned migratory behaviour arise in populations?

Although decades of research have deepened our understanding of the proximate triggers and ultimate drivers of migrations for a range of taxa, how populations establish migrations remains a mystery. However, recent studies have begun to illuminate the interplay between genetically inherited and learned migrations, opening the door to the evaluation of how migration may be learned, established, and maintained. Nevertheless, for migratory species where the role of learning is evident, we lack a comprehensive framework for understanding how populations learn specific routes and refine migratory movements over time (i.e., their origins). This review draws on advances in behavioural and movement ecology to offer a comprehensive framework for how populations could transition from resident to migratory by connecting cognitive research on fine-scale perceptual cues and movement decisions with literature on learning and cultural transmission, to the emergent pattern of migration. We synthesize the multiple cognitive mechanisms and processes that allow a population to respond to seasonal resource limitation, then encode spatial and environmental information about resource availability in memory and engage in social learning to navigate their landscapes and track resources better. A rise in global reintroduction efforts, along with human-induced rapid shifts in environmental cues and changing landscapes make evaluating the origins of this threatened behaviour more urgent than ever.

Biological Reviews↗

USGS2011

Surficial geology of the sea floor in Long Island Sound offshore of Orient Point, New York

The U.S. Geological Survey (USGS), the National Oceanic and Atmospheric Administration (NOAA), and the Connecticut Department of Environmental Protection (CT DEP) are working cooperatively to map and interpret features of the sea floor along the northeastern coast of the United States. This report presents multibeam bathymetry and sidescan-sonar data obtained during NOAA survey H11446, which was conducted in a 12-km2 area in Long Island Sound offshore of Orient Point, NY. In addition, sediment and photographic data from 26 stations obtained during a USGS verification cruise are presented. Overall, the sea floor slopes gently seaward, but topography is more complex in sand-wave and boulder areas, which are evident in the multibeam and sidescan-sonar data from the study area. Sand waves generally have north-south-oriented crests with 10- to 20-m wavelengths. Sand-wave asymmetry indicates eastward net sediment transport in the east and westward net sediment transport in the northern and western parts of the study area. Areas with boulders on the sea floor are typically hummocky and are part of a glacial moraine system. Boulders are typically encrusted with seaweed, sponges, and anemones as shown in the bottom photography.

Open-File Report↗

USGS2015

Mercury and selenium accumulation in the Colorado River food web, Grand Canyon, USA

Mercury (Hg) and selenium (Se) biomagnify in aquatic food webs and are toxic to fish and wildlife. The authors measured Hg and Se in organic matter, invertebrates, and fishes in the Colorado River food web at sites spanning 387 river km downstream of Glen Canyon Dam (AZ, USA). Concentrations were relatively high among sites compared with other large rivers (mean wet wt for 6 fishes was 0.17–1.59 μg g –1 Hg and 1.35–2.65 μg g –1 Se), but consistent longitudinal patterns in Hg or Se concentrations relative to the dam were lacking. Mercury increased (slope = 0.147) with δ 15 N, a metric of trophic position, indicating biomagnification similar to that observed in other freshwater systems. Organisms regularly exceeded exposure risk thresholds for wildlife and humans (6–100% and 56–100% of samples for Hg and Se, respectfully, among risk thresholds). In the Colorado River, Grand Canyon, Hg and Se concentrations pose exposure risks for fish, wildlife, and humans, and the findings of the present study add to a growing body of evidence showing that remote ecosystems are vulnerable to long-range transport and subsequent bioaccumulation of contaminants. Management of exposure risks in Grand Canyon will remain a challenge, as sources and transport mechanisms of Hg and Se extend far beyond park boundaries. Environ Toxicol Chem 2015;9999:1–10

Arizona↗

USGS2015

Concentrations and distributions of metals associated with dissolved organic matter from the Suwannee River (GA, USA)

Concentrations and distributions of metals in Suwannee River (SR) raw filtered surface water (RFSW) and dissolved organic matter (DOM) processed by reverse osmosis (RO), XAD-8 resin (for humic and fulvic acids [FA]), and XAD-4 resin (for “transphilic” acids) were analyzed by asymmetrical flow field-flow fractionation (AsFlFFF). SR samples were compared with DOM samples from Nelson's Creek (NLC), a wetland-draining stream in northern Michigan; previous International Humic Substances Society (IHSS) FA and RO samples from the SR; and an XAD-8 sample from Lake Fryxell (LF), Antarctica. Despite application of cation exchange during sample processing, all XAD and RO samples contained substantial metal concentrations. AsFlFFF fractograms allowed metal distributions to be characterized as a function of DOM component molecular weight (MW). In SR RFSW, Fe, Al, and Cu were primarily associated with intermediate to higher than average MW DOM components. SR RO, XAD-8, and XAD-4 samples from May 2012 showed similar MW trends for Fe and Al but Cu tended to associate more with lower MW DOM. LF DOM had abundant Cu and Zn, perhaps due to amine groups that should be present due to its primarily algal origins. None of the fractograms showed obvious evidence for mineral nanoparticles, although some very small mineral nanoparticles might have been present at trace concentrations. This research suggests that AsFlFFF is important for understanding how metals are distributed in different DOM samples (including IHSS samples), which may be key to metal reactivity and bioavailability.

Georgia↗

USGS2026

Laboratory evaluation of phototaxis in cultured Cisco larvae

Objective Field observations in a Lake Ontario embayment suggested that there is a phototaxic response of larval coregonines that changes with development. Methods We used a controlled laboratory experiment with hatchery-reared larvae exposed to three different light regimes (24-h light, 24-h dark, or 12-h light followed by 12-h dark) to test for phototaxis in Cisco Coregonus artedi . Results Larval depth distributions were not uniform, and contrasts between vertical distributions within early and late portions of the time series when larvae were exposed to light showed evidence of phototaxis and transition to a preference for the bottom around 68 d posthatch. Larval behavior in dark treatments contrasted with those exposed to light and also suggested that other influences on depth distribution could be operating. Conclusions As observed in other species, larval Cisco phototaxis response would likely result in diel vertical migrations and may be an adaptation to changes in food distributions balanced with predation risk as the larvae grow and become stronger swimmers. This has implications for the success of Cisco restoration in the Great Lakes, particularly as climate change affects environmental conditions and phenology.

Transactions of the American Fisheries Society↗

USGS2014

Evaluation of toxicity to the amphipod, Hyalella azteca , and to the midge, Chironomus dilutus ; and bioaccumulation by the oligochaete, Lumbriculus variegatus , with exposure to PCB-contaminated sediments from Anniston, Alabama

The U.S. Environmental Protection Agency (USEPA) requested that as part of the remedial investigation for the Anniston, Alabama Polychlorinated Biphenyl (PCB) Site (Anniston PCB Site), that Pharmacia Corporation and Solutia Inc. (P/S) perform long-term reproduction toxicity tests with the amphipod, Hyalella azteca , and the midge, Chironomus dilutus , and bioaccumulation tests with the oligochaete, Lumbriculus variegatus , using sediment samples collected from reference locations and from Operable Unit 4 of the Anniston PCB Site. The sediment toxicity testing and sediment bioaccumulation results will be used by ARCADIS U.S., Inc. (ARCADIS) as part of a weight-of-evidence assessment to evaluate risks and establish sediment remediation goals for contaminants to sediment-dwelling organisms inhabiting the Anniston PCB Site. The goal of this study was to characterize relations between sediment chemistry and sediment toxicity and relations between sediment chemistry and sediment bioaccumulation in samples of sediments collected from the Anniston PCB Site. A total of 32 samples were evaluated from six test sites and one reference site to provide a wide range in concentrations of chemicals of potential concern (COPCs) including PCBs in samples of whole sediment. The goal of this study was not to determine the extent of sediment contamination across the Anniston PCB Site. Hence, the test sites or samples collected from within a test site were not selected to represent the spatial extent of sediment contamination across the Anniston PCB Site. Sediment chemistry, pore-water chemistry, and sediment toxicity data were generated for 26 sediment samples from the Anniston PCB Site. All of the samples were evaluated to determine if they qualified as reference sediment samples. Those samples that met the chemical selection criteria and biological selection criteria were identified as reference samples and used to develop the reference envelope for each toxicity test endpoint. Physical characterization of samples of whole sediment included analyses of grain size, TOC, and nutrients. Organic chemical characterization of samples of whole sediment included PCB homologs and select (13) PCB congeners, parent and alkylated polycyclic aromatic hydrocarbons (PAHs), organochlorine pesticides, and polychlorinated dibenzo-p-dioxins; and dibenzofurans. The PCB aroclors analyzed included 1016, 1221, 1232, 1242, 1248, 1254, 1260, 1262 and 1268. Analyses of whole sediment also included total metals, simultaneously extracted metals, and acid volatile sulfide. Chemical characterization of samples of pore water isolated from samples of whole sediment at the start of the sediment toxicity exposures or at the start of the sediment bioaccumulation exposures included metals, major cations, major anions, dissolved organic carbon, and additional water-quality characteristics. Concentrations of metals or PCBs in pore water during the sediment toxicity exposures or during sediment bioaccumulation exposures also were determined using peeper samples (for metals) or solid-phase microextraction (SPME) samplers (for PCBs). The bioavailability and bioaccumulation of PCBs in 14 sediment samples were investigated using SPME passive samplers and the 28-d L. variegatus whole-sediment bioaccumulation exposures In general the accumulation of PCBs consistently was predicted through the use of organic carbon normalization and equilibrium partitioning. In these sediments, PCB homologs were accumulated differently based on bioavailability and potential to accumulate in oligochaetes. As part of this assessment homolog specific biota sediment accumulation factor values were developed that could be applied across the larger site to predict tissue levels of PCBs. The whole-sediment toxicity tests done with H. azteca and C. dilutus met the established ASTM and USEPA test acceptability criteria. The most responsive H. azteca endpoints were day 42 survival normalized young per female and day 28 biomass and that the most responsive C. dilutus endpoints were adult biomass and percent adult emergence. Overall, between the two species, the most responsive endpoint assessed for these two species was H. azteca survival-normalized young per female (67 percent of the samples classified as toxic). Concentration-response models (CRMs) and site-specific sediment toxicity thresholds (TTs) were generated with matching sediment chemistry and sediment toxicity data. Sediment chemistry, pore-water chemistry, and sediment toxicity data were evaluated for as many as 26 sediment samples from the Anniston PCB Site. The reference-envelope approach was used to identify the sediment samples that were toxic to benthic invertebrates. This procedure involved identification of reference sediment samples, normalizing the toxicity data to reflect control responses, developing a reference envelope for each toxicity test endpoint, and designating each sediment sample as toxic or not toxic for each toxicity test endpoint, for each species, and for all species combined. These results demonstrated percent emergence of adult C. dilutus , biomass of adult C. dilutus , and reproduction of H. azteca normalized to percent survival were among the most responsive endpoints that were evaluated. Therefore, these endpoints were selected for CRM development. The site-specific TTs for whole sediment provide a reliable basis for identifying toxic and not toxic sediment samples in the Anniston PCB Site (that is, for correctly classifying the sediment samples used to derive the TTs as toxic or not toxic, for the endpoint used to derive the TTs). Among the 69 TTs for sediment, the TT LRs for total PCB homologs [499 to 1,870 micrograms per kilogram dry weight (μg/kg DW)] and for lead [(9.48 to 10.3 milligrams per kilogram (mg/kg) DW] based on reproduction of H. azteca or based on emergence or biomass of adult C. dilutus , were the most reliable. Such TTs had low rates of false negative errors (that is, only 0 to 11 percent of the samples below the TT were toxic to benthic invertebrates), low rates of false positive errors (only 0 to 6 percent of the samples greater than the TT were not toxic to benthic invertebrates), and high rates of correct classification (that is, 92 to 96 percent). The site-specific TTs for PCBs and other COPCs derived in this study also were compared to empirically based sediment quality guidelines (SQGs), to equilibrium-partitioning based SQGs, and to the results of spiked-sediment toxicity tests. The results of this evaluation indicated that the site-specific sediment TTs for PCBs were comparable to the consensus-based SQGs that were derived for PCBs. In addition, the site-specific sediment TTs for PCBs are well within the range of SQGs derived using the equilibrium partitioning approach. The site-specific sediment TTs for PCBs also are consistent with the results of chronic TTs that have been estimated for benthic invertebrates using the results of spiked-sediment toxicity tests. As the site-specific sediment TTs for PCBs are consistent with empirically based SQGs, equilibrium-partitioning based SQGs, and results of sediment-spiking studies, these site- specific sediment TTs likely represent the concentrations of PCBs that are sufficient to cause toxicity to benthic invertebrates (as opposed to simply being correlated with adverse effects on the survival, weight, or reproduction of benthic invertebrates). Importantly, such site-specific sediment TTs have been demonstrated to accurately classify sediment samples as toxic or not toxic to benthic invertebrates at the Anniston PCB Site. In contrast, the TTs for metals, PAHs, and organochlorine pesticides were generally lower than consensus-based SQGs (that is, probable effect concentrations), and LC 50s (median lethal effect concentrations) generated in spiked-sediment toxicity tests, indicating that these COPCs are likely not the main contributors to the observed toxicity of the site sediments evaluated in this study. The reproduction endpoint for H. azteca provided lower TTs compared to the day 28 biomass endpoint for H. azteca and the emergence or biomass endpoints for adult C. dilutus provided lower TTs compared to the day 13 biomass endpoint for C. dilutus .

Alabama↗

USGS2017

Reconciling catch differences from multiple fishery independent gill net surveys

Fishery independent gill net surveys provide valuable demographic information for population assessment and resource management, but relative to net construction, the effects of ancillary species, and environmental variables on focal species catch rates are poorly understood. In response, we conducted comparative deployments with three unique, inter-agency, survey gill nets used to assess walleye Sander vitreus in Lake Erie. We used an information-theoretic approach with Akaike’s second-order information criterion (AIC c ) to evaluate linear mixed models of walleye catch as a function of net type (multifilament and two types of monofilament netting), mesh size (categorical), Secchi depth, temperature, water depth, catch of ancillary species, and interactions among selected variables. The model with the greatest weight of evidence showed that walleye catches were positively associated with potential prey and intra-guild predators and negatively associated with water depth and temperature. In addition, the multifilament net had higher average walleye catches than either of the two monofilament nets. Results from this study both help inform decisions about proposed gear changes to stock assessment surveys in Lake Erie, and advance our understanding of how multispecies associations explain variation in gill net catches. Of broader interest to fishery-independent gill net studies, effects of abiotic variables and ancillary species on focal specie’s catch rates were small in comparison with net characteristics of mesh size or twine type.

Lake Erie↗

USGS2023

Quantifying ecosystem states and state transitions of the Upper Mississippi River System using topological data analysis

Aquatic systems worldwide can exist in multiple ecosystem states (i.e., a recurring collection of biological and chemical attributes), and effectively characterizing multidimensionality will aid protection of desirable states and guide rehabilitation. The Upper Mississippi River System is composed of a large floodplain river system spanning 2200 km and multiple federal, state, tribal and local governmental units. Multiple ecosystem states may occur within the system, and characterization of the variables that define these ecosystem states could guide river rehabilitation. We coupled a long-term (30-year) highly dimensional water quality monitoring dataset with multiple topological data analysis (TDA) techniques to classify ecosystem states, identify state variables, and detect state transitions over 30 years in the river to guide conservation. Across the entire system, TDA identified five ecosystem states. State 1 was characterized by exceptionally clear, clean, and cold-water conditions typical of winter (i.e., a clear-water state); State 2 had the greatest range of environmental conditions and contained most the data (i.e., a status-quo state); and States 3, 4, and 5 had extremely high concentrations of suspended solids (i.e., turbid states, with State 5 as the most turbid). The TDA mapped clear patterns of the ecosystem states across several riverine navigation reaches and seasons that furthered ecological understanding. State variables were identified as suspended solids, chlorophyll a , and total phosphorus, which are also state variables of shallow lakes worldwide. The TDA change detection function showed short-term state transitions based on seasonality and episodic events, and provided evidence of gradual, long-term changes due to water quality improvements over three decades. These results can inform decision making and guide actions for regulatory and restoration agencies by assessing the status and trends of this important river and provide quantitative targets for state variables. The TDA change detection function may serve as a new tool for predicting the vulnerability to undesirable state transitions in this system and other ecosystems with sufficient data. Coupling ecosystem state concepts and TDA tools can be transferred to any ecosystem with large data to help classify states and understand their vulnerability to state transitions.

PLOS Computational Biology↗