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Using natural archives to track sources and long-term trends of pollution: an introduction

This book explores the myriad ways that environmental archives can be used to study the distribution and long-term trajectories of contaminants. The volume first focuses on reviews that examine the integrity of the historic record, including factors related to hydrology, post-depositional diffusion, and mixing processes. This is followed by a series of chapters dealing with the diverse archives available for long-term studies of environmental pollution.

Book chapter↗

What are hierarchical models and how do we analyze them?

In this chapter we provide a basic definition of hierarchical models and introduce the two canonical hierarchical models in this book: site occupancy and N-mixture models. The former is a hierarchical extension of logistic regression and the latter is a hierarchical extension of Poisson regression. We introduce basic concepts of probability modeling and statistical inference including likelihood and Bayesian perspectives. We go through the mechanics of maximizing the likelihood and characterizing the posterior distribution by Markov chain Monte Carlo (MCMC) methods. We give a general perspective on topics such as model selection and assessment of model fit, although we demonstrate these topics in practice in later chapters (especially Chapters 5, 6, 7, and 10 Chapter 5 Chapter 6 Chapter 7 Chapter 10)

Book chapter↗

Colorado River Basin

The Colorado River is often referred to as “the lifeblood of the west.” The basin supplies municipal water to nearly 40 million people and irrigates approximately 22,000 km 2 of agricultural lands. Twenty-two major rivers converge with the Colorado after it begins its descent from the Rocky Mountains and winds through the plateaus of Colorado, Utah, and Arizona, onto the deserts of southwestern Arizona, and finally into the Gulf of California, where inflows from the Río Hardy and Río Sonoyta in Mexico complete the drainage. The mainstem Colorado, Green, Yampa, Little Colorado, and Yampa Rivers are described in further detail in the 2005 edition (Blinn and Poff, 2005) of this book. In this edition, we discuss seven other major tributaries in the Colorado River basin: the Gunnison, San Juan, Virgin, Bill Williams, Verde, Black, and Salt Rivers. The water quality and quantity, flora and fauna, and sediment and organic loads of each of these tributaries uniquely alter the mainstem Colorado River and the habitat it provides. Thus, understanding the hydrology, ecology, and human use of these tributaries is critical toward understanding both the complex history and present-day management of the Colorado River Basin as a whole.

Arizona, Baja California, California, Colorado, Ne↗

Coastal wetlands: A synthesis

This book and this synthesis address the pressing need for better management of coastal wetlands worldwide because these wetlands are disappearing at an alarming rate; in some countries the loss is 70%–80% in the last 50 years. Managing requires understanding. Although our understanding of the functioning of coastal wetland ecosystems has grown rapidly over the past decade, still much remains to be learned and understood. We have gained insight into the roles of geomorphic processes, hydrologic dynamics, biotic feedback, and disturbance agents in creating and molding a variety of coastal wetland ecosystems across climatic gradients. The variety is expressed not so much in the more obvious differences in vegetation cover, but rather how physical processes both facilitate and constrain a diversity of plant and animal communities. At one level, coastal wetlands are the product of tidal forces and freshwater inputs at the margin of continents. At another level, the plants control the water currents in the tidal creeks draining the wetlands by generating a tidal current asymmetry that controls sediment transport and results in a deep tidal creek surrounded by shallow vegetated wetlands. The vegetation also influences the physics of water and sediment through several other processes including biofilms, bioturbation of sediments, the buffeting of currents and waves, organic enrichment of sediments, and the closing of nutrient cycles. Few ecosystems provide us with so many clear examples of such feedback controls. What we do understand about the structure and functioning of coastal wetlands should provide the theoretical underpinnings for effective management in protecting them for their many contributions to ecosystem goods and services. What we do not understand should compel us to focus our attention and energies toward seeking optimal solutions to some of the most perplexing and urgent problems facing natural resource management.

Book chapter↗

Living in Yellowstone's Caldera: A geochemical trophic cascade in elk

Though the geology of earth's rare geothermal environments and their associated microbial communities are intensely studied, less scientific attention has focused on their potential effects through the plant-herbivore-carnivore trophic chain. The west-central portion of Yellowstone National Park contains a 2000-km 2 volcanic caldera with 2- to 60-million-year-old, predominantly rhyolitic, rocks that produce relatively infertile soils. The caldera area contains one of the largest concentrations of active geothermal features in the world, including thousands of geysers, fumaroles , hot springs, and mud pots. In many other chapters of this book, we address the ecological impacts of this unique geology to the ecology of the large mammals that live within the caldera, primarily through the effects of geothermal heat on snow pack. In this chapter, we explore the unique geochemistry of the geothermal environments and the consequences of this geochemistry to elk and perhaps other herbivores that reside within the caldera. These studies were prompted by behavioral and demographic observations of elk during the initial years of our studies that we could not explain and, in turn, led us to formulate hypotheses about potential geochemical influences on elk ecology. Specifically, we contrast the concentrations of fluoride (F) and silica (SiO 2 ) found in the Madison headwaters area with areas on Yellowstone's northern range located approximately 50 km to the northwest, where geothermal features are rare or absent. We then trace the consequences of geochemical differences through abiotic and biotic linkages in the ecosystem.

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Geoinformatics in the public service: Building a cyberinfrastructure across the geological surveys

Advanced information technology infrastructure is increasingly being employed in the Earth sciences to provide researchers with efficient access to massive central databases and to integrate diversely formatted information from a variety of sources. These geoinformatics initiatives enable manipulation, modeling and visualization of data in a consistent way, and are helping to develop integrated Earth models at various scales, and from the near surface to the deep interior. This book uses a series of case studies to demonstrate computer and database use across the geosciences. Chapters are thematically grouped into sections that cover data collection and management; modeling and community computational codes; visualization and data representation; knowledge management and data integration; and web services and scientific workflows. Geoinformatics is a fascinating and accessible introduction to this emerging field for readers across the solid Earth sciences and an invaluable reference for researchers interested in initiating new cyberinfrastructure projects of their own.

Book chapter↗

Fire management of Mediterranean landscapes

The hazardous mediterranean climate, highly flammable vegetation, and rugged terrain, all important elements of fire behavior, become problems only in the presence of people. People recreate and build homes in the mediterranean wildlands because of the delightful climate and will continue to do so as long as space is available. People start most fires, and their mere presence tends to warp fire suppression strategies because fire agencies must protect lives and property threatened by fires rather than “back off” and build fire lines around fire perimeters . Carl C. Wilson (1979a), Chief of Division of Forest and Fire Research, USFS/Pacific Southwest Forest and Range Experiment Station Human presence in mediterranean-type climate (MTC) regions has differed markedly in the length of human occupation; however, there are remarkable similarities in how early inhabitants altered fire regimes and how modern societies deal with the fire hazard. Here we draw on the history of human impacts outlined in the regional reviews (see Chapters 4–8), the problems created by nineteenth and twentieth century management practices, and conclude with twenty-first century problems and future options. As discussed throughout this book, MTC ecosystems are highly fire adapted but, as illustrated here, contemporary societies have not fully adapted to balancing fire hazard risk and resource needs on these landscapes. Early Human Fire Use and Impacts Fire has been a widely utilized management tool throughout the history of humankind (Pyne 1995). Early hunter–gatherers utilized fire to manage for plant and animal resources. Fire also played an important role in early domestication of crops as clearing off woody or other perennial vegetation would have required fire on many landscapes. With domestication of livestock it was an important tool for increasing forage.

Book chapter↗

Introduction: Metallurgical slags - Environmental liability or valuable resource?

Slags are important by-products generated by ferrous and non-ferrous pyrometallurgical operations, with hundreds of millions of tonnes generated globally each year. Depending on the chemical and mineralogical compositions of slags, they may be disposed of as waste, which can then weather and release contaminants into the environment with the potential to impact the ecosystem and humans. Alternately, slags can find use as raw materials with numerous applications in civil engineering or environmental technologies. Furthermore, residual metals, either those targeted for extraction or those that co-occur in the ore or furnace feed and partition into the slag, can be recovered for value. With the ultimate goal of a sustainable environment and a circular economy, the research on slags that is presented in this book will lead us to a better understanding of the environmental consequences of slag disposed of as waste and motivate us to find value in it.

Book chapter↗

Sediment transport measurements

Sediment erosion, transport, and deposition in fluvial systems are complex processes that are treated in detail in other sections of this book. Development of methods suitable for the collection of data that contribute to understanding these processes is a still-evolving science. Sediment and ancillary data are fundamental requirements for the proper management of river systems, including the design of structures, the determination of aspects of stream behavior, ascertaining the probable effect of removing an existing structure, estimation of bulk erosion, transport, and sediment delivery to the oceans, ascertaining the long-term usefulness of reservoirs and other public works, tracking movement of solid-phase contaminants, restoration of degraded or otherwise modified streams, and assistance in the calibration and validation of numerical models. This chapter presents techniques for measuring bed-material properties and suspended and bed-load discharges. Well-established and relatively recent, yet adequately tested, sampling equipment and methodologies, with designs that are guided by sound physical and statistical principles, are described. Where appropriate, the theory behind the development of the equipment and guidelines for its use are presented.

Book chapter↗

Maintaining wetland ecosystem services in a changing climate

A changing climate is causing challenges for soil and water management in many parts of the world. Current soil management practices need to be redesigned to effectively address present and future fluctuating climates. Soil Hydrology in a Changing Climate explores how soil management practices impact soil hydrological characteristics, and how we can improve our understanding of soil and water management under changing conditions. Soil hydrology includes water infiltration and soil water storage, which are critical for agricultural plant and animal production. With our future climate predicted to include hotter, drier conditions, increases in evapotranspiration as well as fewer, more intense storms, improved soil management and soil hydrology are critical to ensuring our agriculture production can meet human demand. This comprehensive book is a valuable resource for land managers, soil conservationists, researchers and others who wish to understand how different management practices affect soil and water dynamics and how these practices can be adjusted to enhance agricultural sustainability and environmental quality.

Book chapter↗

Foreward: Geology Field Trips in and around the U.S. Capital

The first annual meeting of the Geological Society of America (GSA) was held in 1888 in Ithaca, New York (Fairchild, 1932), but official Sections of GSA formed much later. During the spring of 1949, a symposium in Knoxville, Tennessee, on mineral resources of the southeastern United States became the catalyst for the creation of the Southeastern Section of the Geological Society of America (King, 1964), and the first annual meeting of the Southeastern Section was held in 1952 in Roanoke, Virginia (Wilson, 1954). The Northeastern Section formed much later, and its first annual meeting was held in 1966 in Philadelphia, Pennsylvania (Socolow, 1968). At all of these section meetings, field trips have been important venues for geologists and especially students to gather together, examine rocks in the field, and discuss ideas. These field trips have been especially important at combined section meetings because they provide settings for geologists who are experienced in one geographic region to examine and compare the geology of other regions. The first combined meeting of the Southeastern and Northeastern sections occurred in 1976 in Arlington, Virginia. Since then, the Southeastern and Northeastern sections have met together on numerous occasions, including 1982 in Washington, DC; 1991 in Baltimore, Maryland; 2004 in Tysons Corner, Virginia; and 2010 in Baltimore, Maryland. Since the first combined section meeting in 1976, there has been a gradual increase in the role of technology in geology field studies. In fact, during the past several decades there has been an increase in emphasis in our society on the instrumental component of science, the goal of which is operational techniques to do or control things, and a corresponding decrease in emphasis on the natural philosophy component of science, the goal of which is a greater understanding of the natural world (Dear, 2006). The modern education acronym STEM (Science, Technology, Engineering, and Mathematics), for example, is often used as a catch-all term that implies that science and technology are relatively synonymous, and implies that greater technology leads automatically to greater understanding of the natural world. This assumption, however, is not always valid (Dear, 2006), and technology should not be promoted as a substitute for field experiences. Technology can be a tool that leads to greater understanding of the natural world, but not all Science uses technology as a means of providing greater understanding. The benefits of new technologies include: (1) data of greater resolution; and (2) greater efficiency of capturing, storing, and visualizing data. The risks of new technologies include: (1) an overabundance of data, some of which may be of little value; (2) less time available for analysis of data, if geologists become occupied primarily with capturing and storing data; and (3) errors that arise from complacency and the perception that field-checking may not be necessary. In other words, there is a risk that a glut of data and vast amounts of time devoted to the capturing and storing of data may result in a reduced interest and (or) willingness to field-check data. In the spirit of the early GSA section meetings, we feel that there are still enormous advantages to conducting geology field trips in conjunction with traditional meeting presentations and posters. In 2020, with this current combined Southeastern and Northeastern section meeting in Reston, Virginia, we have assembled eight different field trips that cover a wide range of territory in and around the Nation’s capital. These field trip localities include the immediate vicinity of Washington, DC, as well as various locations in nearby areas of Virginia, Maryland, and West Virginia. The physiographic provinces include Mesozoic Rift Basins, the Piedmont, the Blue Ridge, the Valley and Ridge, and the Allegheny Plateau of the Appalachian Basin. The field trip sites exhibit a wide range of igneous, metamorphic, and sedimentary rocks, as well as rocks with a wide range of geologic ages from the Mesoproterozoic to the Holocene. We hope that this guidebook provides new motivation for geologists to examine rocks in the field, to discuss ideas with colleagues in the field, and to avoid becoming complacent. The editors of this volume would like to thank the authors of the different field trip guides, the field trip leaders, and all of the reviewers who made suggestions for improving the field trip manuscripts. The editors would also like to thank Elle Derwent of GSA for her logistical help and guidance regarding the field trips, and April Leo and the staff of the GSA Publications Department for seeing this book through to publication.

Maryland, Virginia, West Virginia↗

Faulting and seismic activity

This chapter traces some of the ideas and concepts leading to the current understanding of the process of faulting and earthquake generation, gives examples of engineering geology investigations contributing to that understanding, describes some engineering projects that have been strongly influenced by the process, and suggests needed research. Each of these topics is discussed in sequence. The understanding of faulting and earthquakes and of the significance of these to engineering has developed over several centuries. John Michell in 1761 was probably the first to publish a cross section of a clearly recognizable fault (Adams, 1938, Fig. 66). Michell did not attribute earthquakes to faulting, but proposed the important idea that seismic vibrations were the result of the propagation of elastic waves in the earth (Adams, 1938). Charles Lyell (1830) emphasized the uplift and depression of land that accompanies earthquakes. He did not attribute earthquakes to faulting, but a contemporary of his evidently did, for the following statement appeared in a review of Lyell’s book (Scrap, 1830, p. 463): The sudden fracture of solid strata by any disruptive force must necessarily produce a violent vibratory jar to a considerable distance along the continuation of these strata. Such vibrations would be propagated in undulations, which may be expected, when influencing a mass of rocks several thousand feet at least in thickness, to produce on the surface exactly the wave-like motion, the opening and shutting of crevices, the tumbling down of cliffs and walls, and other characteristic phenomena of earthquakes. This idea was apparently disregarded, and coseismic faulting, some of which reached the ground surface, was generally considered to be the result rather than the cause of earthquakes until the time of G. K. Gilbert.

DNAG Special Publication↗

Military geology unit of the U.S. Geological Survey during World War II

On June 24, 1942, the temporary Military Geology Unit of the U.S. Geological Survey was formalized after the U.S. Army Corps of Engineers requested them to prepare terrain intelligence studies to meet wartime priorities. The entire Military Geology Unit wartime roster was 114 professionals, including 88 geologists, 11 soil scientists, and 15 other specialists; 14 were women. Assisting staff (illustrators, typists, photographers, and others) totaled 43. The unit produced 313 studies, including 140 major terrain folios, 42 other major special reports, and 131 minor studies. These reports contain about 5,000 maps, 4,000 photographs and figures, 2,500 large tables, and 140 terrain diagrams. Most products were designed in the beginning for general strategic planning in Washington and later for detailed strategic planning overseas; they utilized graphics and nontechnical, telegraphic-style tabular texts. The Military Geology Unit's principal effort was the preparation of the terrain folios titled Strategic Engineering Studies. They varied somewhat in content and format, but the key components usually were introduction, terrain appreciation, rivers, road and airfield construction, construction materials, and water resources. The folios, produced at an average rate of about one per week and at an average cost of $2,500, were compiled from scientific journals, books, maps, and photographs available in the Washington area by a team of 3 to 8 scientists; 8 to 12 teams might be working concurrently. MGU personnel took great pride in never having missed a delivery deadline.

Book chapter↗

Petroleum and individual polycyclic aromatic hydrocarbons

A general treatment of petroleum and PAHs including presentations on composition and characteristics, sources, environmental fate, and effects on plants, invertebrates, fish, reptiles and amphibians, birds, and mammals. A revision of the 1995 book chapter of the same title.

Book chapter↗

Sustainable fisheries management: Pacific salmon

What has happened to the salmon resource in the Pacific Northwest? Who is responsible and what can be done to reverse the decline in salmon populations? The responsibly falls on everyone involved - fishermen, resource managers and concerned citizens alike - to take the steps necessary to ensure that salmon populations make a full recovery. This collection of papers examines the state of the salmon fisheries in the Pacific Northwest. They cover existing methods and supply model approaches for alternative solutions. The editors stress the importance of input from and cooperation with all parties involved to create a viable solution. Grass roots education and participation is the key to public support - and ultimately the success - of whatever management solutions are developed. A unique and valuable scientific publication, Sustainable Fisheries Management: Pacific Salmon clearly articulates the current state of the Pacific salmon resource, describes the key features of its management, and provides important guidance on how we can make the transition towards sustainable fisheries. The solutions presented in this book provide the basis of a strategy for sustainable fisheries, requiring society and governmental agencies to establish a shared vision, common policies, and a process for collaborative management.

Book↗

One Northwest community - People, salmon, rivers, and the sea: Towards sustainable salmon fisheries

Pacific salmon management is in crisis. Throughout their range, salmon and steelhead populations are being adversely affected by human activities. Without coordinated, effective, and timely action, the future of the Pacific salmon resource is most certainly in doubt. To address the challenges that are currently facing salmon management, concerned citizens representing a diverse array of government agencies and non-governmental organizations have agreed to cooperate in the development of a Sustainable Fisheries Strategy for west coast salmon and steelhead populations. The Strategy builds on the contents of this book, resulting from the Sustainable Fisheries Conference and subsequent community- and watershed-based citizen forums. This chapter presents the key elements of the Strategy including a common vision for the future, a series of guiding principles, and specific strategies for supporting sustainable fisheries. As such, the Strategy embraces an ecosystem-based approach to managing human activities, rather than the traditional egocentric approach to managing salmonid populations and associated habitats. A system of community-based, watershed-oriented councils, including all stakeholders and agency representatives, is proposed for effective transition to ecosystem-based salmon and steelhead management. It is our hope that everyone involved in Pacific salmon management will embrace both the spirit and the specific elements of the Sustainable Fisheries Strategy as we face the difficult challenges ahead.

Book chapter↗

Introduction

Ecotoxicology is the study of the movement of environmental contaminants through ecosystems and their effects on plants and animals. Examining tissue residues of these contaminants in biota is basic to ecotoxicology, both for understanding the movement of contaminants within organisms and through food chains, and for understanding and quantifying injuries to organisms and their communities. This book provides guidance on interpreting tissue concentrations of environmental contaminants. Tissue concentrations have long been used both to identify the cause of toxicity in animals and as a measure of the severity of toxicity. More recently, they have been incorporated into environmental models, tying together exposure, kinetics, and toxic effects. Measuring tissue concentrations is basic to studies on the kinetics of contaminants, which entails characterizing the rates of uptake and elimination in organisms, as well as redistribution (organs, lipid, and plasma) within them. Tissue concentrations are also used in ecological studies examining the movement of contaminants between organisms and within biological communities.

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Conclusion

This book has presented what is known about the extent and causes of amphibian population declines in the United States and what can be done about them. It has also examined life history and natural history features needed to manage for amphibians, with a current assessment of their distribution. In assembling the literature for this project, and with a quick look at the species accounts, what is immediately noticeable is that a few species are well known and have a large literature, some species are better known and have a modest literature, and many species are almost unknown. An existing scientific literature creates a future scientific literature and results in a species bias. Workers are strongly encouraged to explore species that are not well known and to seek questions from field observations. Scientists must also explore creative new techniques for observing and monitoring inconvenient animals.

Book chapter↗