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At least 775 records · Page 43Linked to original sources
USGS2011

Migratory flyway and geographical distance are barriers to the gene flow of influenza virus among North American birds

Despite the importance of migratory birds in the ecology and evolution of avian influenza virus (AIV), there is a lack of information on the patterns of AIV spread at the intra‐continental scale. We applied a variety of statistical phylogeographic techniques to a plethora of viral genome sequence data to determine the strength, pattern and determinants of gene flow in AIV sampled from wild birds in North America. These analyses revealed a clear isolation‐by‐distance of AIV among sampling localities. In addition, we show that phylogeographic models incorporating information on the avian flyway of sampling proved a better fit to the observed sequence data than those specifying homogeneous or random rates of gene flow among localities. In sum, these data strongly suggest that the intra‐continental spread of AIV by migratory birds is subject to major ecological barriers, including spatial distance and avian flyway.

California, Oregon, Washington↗
USGS2006

Importance of spatial autocorrelation in modeling bird distributions at a continental scale

Spatial autocorrelation in species' distributions has been recognized as inflating the probability of a type I error in hypotheses tests, causing biases in variable selection, and violating the assumption of independence of error terms in models such as correlation or regression. However, it remains unclear whether these problems occur at all spatial resolutions and extents, and under which conditions spatially explicit modeling techniques are superior. Our goal was to determine whether spatial models were superior at large extents and across many different species. In addition, we investigated the importance of purely spatial effects in distribution patterns relative to the variation that could be explained through environmental conditions. We studied distribution patterns of 108 bird species in the conterminous United States using ten years of data from the Breeding Bird Survey. We compared the performance of spatially explicit regression models with non-spatial regression models using Akaike's information criterion. In addition, we partitioned the variance in species distributions into an environmental, a pure spatial and a shared component. The spatially-explicit conditional autoregressive regression models strongly outperformed the ordinary least squares regression models. In addition, partialling out the spatial component underlying the species' distributions showed that an average of 17% of the explained variation could be attributed to purely spatial effects independent of the spatial autocorrelation induced by the underlying environmental variables. We concluded that location in the range and neighborhood play an important role in the distribution of species. Spatially explicit models are expected to yield better predictions especially for mobile species such as birds, even in coarse-grained models with a large extent. ?? Ecography.

Ecography↗
USGS1965

Bird mortality after spraying for Dutch elm disease with DDT

In Hanover, New Hampshire, where elms were sprayed with DDT, 151 dead birds were found; 10 dead birds were found in Norwich, Vermont, where no DDT was used. Chemical analyses of dead birds, observation of symptoms of DDT poisoning, and a population decline after spraying all indicate severe mortality among certain species in Hanover.

New Hampshire, Vermont↗
USGS1990

Components of breeding productivity in a marine bird community: key factors and concordance

We estimated components of annual breeding productivity for eight species of marine birds on the Semidi Islands in the western Gulf of Alaska. Mortality of eggs and young, caused primarily by avian predators, accounted for most of the annual variation in productivity. Failure to produce eggs, clutch size variation, and the hatchability of eggs were generally less important. The stage of breeding at which annual productivity was most strongly regulated differed among species. In murres, chick-rearing success accounted for the largest share of annual variation in overall productivity, whereas incubation success was the key factor in fulmars, kittiwakes, and puffins. Although avian predators were the dominant proximate cause of egg and chick losses in some species, food supply seemed ultimately responsible for variation in all the major components of productivity. Concordance of productivity among species was low for the marine bird community as a whole, but selected pairs of species exhibited a greater tendency for high and low productivities to occur in the same years. Compared with the same or similar species outside Alaska, Semidi Islands birds were in one of three categories: ( i ) species whose productivity was about the same as reported from other areas (fulmars and gulls), ( ii ) species with comparatively low productivity (murres, puffins, kittiwakes), and ( iii ) species with similar mean productivity but greater annual variation (cormorants). These patterns suggest that specialized consumers of forage fish experienced food shortages at the Semidi Islands and that surface feeders were more severely affected than divers.

Alaska↗
USGS2007

Long-term performance of Aanderaa optodes and sea-bird SBE-43 dissolved-oxygen sensors bottom mounted at 32 m in Massachusetts Bay

A field evaluation of two new dissolved-oxygen sensing technologies, the Aanderaa Instruments AS optode model 3830 and the Sea-Bird Electronics, Inc., model SBE43, was carried out at about 32-m water depth in western Massachusetts Bay. The optode is an optical sensor that measures fluorescence quenching by oxygen molecules, while the SBE43 is a Clark polarographic membrane sensor. Optodes were continuously deployed on bottom tripod frames by exchanging sensors every 4 months over a 19-month period. A Sea-Bird SBE43 was added during one 4-month deployment. These moored observations compared well with oxygen measurements from profiles collected during monthly shipboard surveys conducted by the Massachusetts Water Resources Authority. The mean correlation coefficient between the moored measurements and shipboard survey data was >0.9, the mean difference was 0.06 mL L −1 , and the standard deviation of the difference was 0.15 mL L −1 . The correlation coefficient between the optode and the SBE43 was >0.9 and the mean difference was 0.07 mL L −1 . Optode measurements degraded when fouling was severe enough to block oxygen molecules from entering the sensing foil over a significant portion of the sensing window. Drift observed in two optodes beginning at about 225 and 390 days of deployment is attributed to degradation of the sensing foil. Flushing is necessary to equilibrate the Sea-Bird sensor. Power consumption by the SBE43 and required pump was 19.2 mWh per sample, and the optode consumed 0.9 mWh per sample, both within expected values based on manufacturers’ specifications.

Massachusetts↗
USGS2007

Applying the scientific method when assessing the influence of migratory birds on the dispersal of H5N1

Background The role of wild birds in the dispersal of highly pathogenic avian influenza virus H5N1 continues to be the subject of considerable debate. However, some researchers functionally examining the same question are applying opposing null hypotheses when examining this issue. Discussion I describe the correct method for establishing a null hypothesis under the scientific method. I suggest that the correct null hypothesis is that migratory birds can disperse this virus during migration and encourage researchers to design studies to falsify this null. Finally, I provide several examples where statements made during this debate, while strictly true, are not generally informative or are speculative. Summary By adhering to the scientific method, definitive answers regarding the role of wild birds in the dispersal of highly pathogenic viruses will be reached more effectively.

Virology Journal↗
USGS2015

Wild bird surveillance for highly pathogenic avian influenza H5 in North America

It is unknown how the current Asian origin highly pathogenic avian influenza H5 viruses arrived, but these viruses are now poised to become endemic in North America. Wild birds harbor these viruses and have dispersed them at regional scales. What is unclear is how the viruses may be moving from the wild bird reservoir into poultry holdings. Active surveillance of live wild birds is likely the best way to determine the true distribution of these viruses. We also suggest that sampling be focused on regions with the greatest risk for poultry losses and attempt to define the mechanisms of transfer to enhance biosecurity. Responding to the recent outbreaks of highly pathogenic avian influenza in North America requires an efficient plan with clear objectives and potential management outcomes.

Virology Journal↗
USGS2009

Bird-like anatomy, posture, and behavior revealed by an early jurassic theropod dinosaur resting trace

Background: Fossil tracks made by non-avian theropod dinosaurs commonly reflect the habitual bipedal stance retained in living birds. Only rarely-captured behaviors, such as crouching, might create impressions made by the hands. Such tracks provide valuable information concerning the often poorly understood functional morphology of the early theropod forelimb. Methodology/Principal Findings: Here we describe a well-preserved theropod trackway in a Lower Jurassic (???198 millionyear- old) lacustrine beach sandstone in the Whitmore Point Member of the Moenave Formation in southwestern Utah. The trackway consists of prints of typical morphology, intermittent tail drags and, unusually, traces made by the animal resting on the substrate in a posture very similar to modern birds. The resting trace includes symmetrical pes impressions and well-defined impressions made by both hands, the tail, and the ischial callosity. Conclusions/Significance: The manus impressions corroborate that early theropods, like later birds, held their palms facing medially, in contrast to manus prints previously attributed to theropods that have forward-pointing digits. Both the symmetrical resting posture and the medially-facing palms therefore evolved by the Early Jurassic, much earlier in the theropod lineage than previously recognized, and may characterize all theropods.

PLoS ONE↗
USGS2014

Sampling strategies and biodiversity of influenza A subtypes in wild birds

Wild aquatic birds are recognized as the natural reservoir of avian influenza A viruses (AIV), but across high and low pathogenic AIV strains, scientists have yet to rigorously identify most competent hosts for the various subtypes. We examined 11,870 GenBank records to provide a baseline inventory and insight into patterns of global AIV subtype diversity and richness. Further, we conducted an extensive literature review and communicated directly with scientists to accumulate data from 50 non-overlapping studies and over 250,000 birds to assess the status of historic sampling effort. We then built virus subtype sample-based accumulation curves to better estimate sample size targets that capture a specific percentage of virus subtype richness at seven sampling locations. Our study identifies a sampling methodology that will detect an estimated 75% of circulating virus subtypes from a targeted bird population and outlines future surveillance and research priorities that are needed to explore the influence of host and virus biodiversity on emergence and transmission.

PLoS ONE↗
USGS2018

Influenza A virus recovery, diversity, and intercontinental exchange: A multi-year assessment of wild bird sampling at Izembek National Wildlife Refuge, Alaska

Western Alaska is a potential point-of-entry for foreign-origin influenza A viruses (IAVs) into North America via migratory birds. We sampled waterfowl and gulls for IAVs at Izembek National Wildlife Refuge (NWR) in western Alaska, USA, during late summer and autumn months of 2011–2015, to evaluate the abundance and diversity of viruses at this site. We collected 4842 samples across five years from 25 species of wild birds resulting in the recovery, isolation, and sequencing of 172 IAVs. With the intent of optimizing sampling efficiencies, we used information derived from this multi-year effort to: 1) evaluate from which species we consistently recover viruses, 2) describe viral subtypes of isolates by host species and year, 3) characterize viral gene segment sequence diversity with respect to host species, and assess potential differences in the viral lineages among the host groups, and 4) examine how evidence of intercontinental exchange of IAVs relates to host species. We consistently recovered viruses from dabbling ducks ( Anas spp .), emperor geese ( Chen canagica ) and glaucous-winged gulls ( Larus glaucescens ). There was little evidence for differences in viral subtypes and diversity from different waterfowl hosts, however subtypes and viral diversity varied between waterfowl host groups and glaucous-winged gulls. Furthermore, higher proportions of viral sequences from northern pintails ( Anas acuta ), emperor geese and glaucous-winged gulls were grouped in phylogenetic clades that included IAV sequences originating from wild birds sampled in Asia as compared to non-pintail dabbling ducks, a difference that may be related to intercontinental migratory tendencies of host species. Our summary of research and surveillance efforts at Izembek NWR will assist in future prioritization of which hosts to sample and swab types to collect in Alaska and elsewhere in order to maximize isolate recovery, subtype and sequence diversity for resultant viruses, and detection of evidence for intercontinental viral exchange.

Alaska↗
USGS2019

Relative contribution of climate and non-climate drivers in determining dynamic rates ofboreal birds at the edge of their range

The Adirondack Park in New York State contains a unique and limited distribution of boreal ecosystem types, providing habitat for a number of birds at the southern edge of their range. Species are projected to shift poleward in a warming climate, and the limited boreal forest of the Adirondacks is expected to undergo significant change in response to rising temperatures and changing precipitation patterns. Here we expand upon a previous analysis to examine changes in occupancy patterns for eight species of boreal birds over a decade (2007–2016), and we assess the relative contribution of climate and non-climate drivers in determining colonization and extinction rates. Our analysis identifies patterns of declining occupancy for six of eight species, including some declines which appear to have become more pronounced since a prior analysis. Although non-climate drivers such as wetland area, connectivity, and human footprint continue to influence colonization and extinction rates, we find that for most species, occupancy patterns are best described by climate drivers. We modeled both average and annual temperature and precipitation characteristics and find stronger support for species’ responses to average climate conditions, rather than interannual climate variability. In general, boreal birds appear most likely to colonize sites that have lower levels of precipitation and a high degree of connectivity, and they tend to persist in sites that are warmer in the breeding season and have low and less variable precipitation in the winter. It is likely that these responses reflect interactions between broader habitat conditions and temperature and precipitation variables. Indirect climate influences as mediated through altered species interactions may also be important in this context. Given climate change predictions for both temperature and precipitation, it is likely that habitat structural changes over the long term may alter these relationships in the future.

New York↗
USGS2022

Ecological divergence of wild birds drives avian influenza spillover and global spread

The diversity of influenza A viruses (IAV) is primarily hosted by two highly divergent avian orders: Anseriformes (ducks, swans and geese) and Charadriiformes (gulls, terns and shorebirds). Studies of IAV have historically focused on Anseriformes, specifically dabbling ducks, overlooking the diversity of hosts in nature, including gull and goose species that have successfully adapted to human habitats. This study sought to address this imbalance by characterizing spillover dynamics and global transmission patterns of IAV over 10 years at greater taxonomic resolution than previously considered. Furthermore, the circulation of viral subtypes in birds that are either host-adapted (low pathogenic H13, H16) or host-generalist (highly pathogenic avian influenza—HPAI H5) provided a unique opportunity to test and extend models of viral evolution. Using Bayesian phylodynamic modelling we uncovered a complex transmission network that relied on ecologically divergent bird hosts. The generalist subtype, HPAI H5 was driven largely by wild geese and swans that acted as a source for wild ducks, gulls, land birds, and domestic geese. Gulls were responsible for moving HPAI H5 more rapidly than any other host, a finding that may reflect their long-distance, pelagic movements and their immuno-naïve status against this subtype. Wild ducks, long viewed as primary hosts for spillover, occupied an optimal space for viral transmission, contributing to geographic expansion and rapid dispersal of HPAI H5. Evidence of inter-hemispheric dispersal via both the Pacific and Atlantic Rims was detected, supporting surveillance at high latitudes along continental margins to achieve early detection. Both neutral (geographic expansion) and non-neutral (antigenic selection) evolutionary processes were found to shape subtype evolution which manifested as unique geographic hotspots for each subtype at the global scale. This study reveals how a diversity of avian hosts contribute to viral spread and spillover with the potential to improve surveillance in an era of rapid global change.

PLoS Pathogens↗
USGS1982

Subacute toxicity testing with young birds: Response in relation to age and intertest variability of LC50 estimates

The variability in toxic response of Japanese quail (Coturnix coturnix japonica) to a standardized 5-day subacute feeding trial was studied while age was increased at weekly intervals from 1 to 21 days and at different times with 14-day-old birds. The objectives were to identify the strengths and limitations of this subacute toxicity protocol and to provide possible explanations for differences in response among the various classes of pesticides. The variables included the median lethal concentration (LC50), the dose-response slope, food consumption, mortality patterns, and procedures of preparing toxic diets. Carbamate, organophosphate, chlorinated hydrocarbon, and organic mercury compounds were represented. A total of 60 subacute tests were involved in this evaluation. The general conclusions of the study are as follows: (1) The basic protocol yields good within-laboratory reproducibility of results. (2) The LC50s increase as birds grow older, and the change was reasonably predictable between 7 and 21 days of age. (3) Monitoring of time-related response patterns, such as food consumption, onset and remission of overt toxicity, and mortality, is critical to the evaluation of potential hazard. (4) Different orders of toxicity may occur at different ages for an array of compounds, but differences do not appear to be large enough to seriously alter the interpretation. (5) For optimal comparisons, all testing should be conducted on birds of a single age.

Book chapter↗
USGS1979

Endrin versus 12-ketoendrin in birds and rodents

British workers showed that in rats the endrin metabolite, 12-ketoendrin, was five times as toxic as endrin, was probably the ultimate cause of death, and was the main form of endrin in the brain at death. In cows and rabbits, however, they detected little of this metabolite. They found none in hens. We found no 12-ketoendrin in birds of four orders that had been heavily exposed to or killed by endrin. We suggest that residue work with birds need not consider this compound unless birds have been eating endrin-killed rodents. White mice had much less 12-ketoendrin than rats, but had more endrin. In tests with spiked samples, 12-ketoendrin was successfully recovered from extracts by gel permeation chromatography, but not by florisil.

Book chapter↗
USGS2008

Sources of variation in detection of wading birds from aerial surveys in the Florida Everglades

We conducted dual-observer trials to estimate detection probabilities (probability that a group that is present and available is detected) for fixed-wing aerial surveys of wading birds in the Everglades system, Florida. Detection probability ranged from <0.2 to similar to 0.75 and varied according to species, group size, observer, and the observer's position in the aircraft (front or rear seat). Aerial-survey simulations indicated that incomplete detection can have a substantial effect oil assessment of population trends, particularly river relatively short intervals (<= 3 years) and small annual changes in population size (<= 3%). We conclude that detection bias is an important consideration for interpreting observations from aerial surveys of wading birds, potentially limiting the use of these data for comparative purposes and trend analyses. We recommend that workers conducting aerial surveys for wading birds endeavor to reduce observer and other controllable sources of detection bias and account for uncontrollable sources through incorporation of dual-observer or other calibratior methods as part of survey design (e.g., using double sampling).

The Auk↗
USGS2012

Avian botulism and avian chlamydiosis in wild water birds, Benton Lake National Wildlife Refuge, Montana, USA

In 1999, the U.S. Geological Survey (USGS) National Wildlife Health Center, Madison, Wisconsin, conducted a diagnostic investigation into a water bird mortality event involving intoxication with avian botulism type C and infection with avian chlamydiosis at the Benton Lake National Wildlife Refuge in Montana, USA. Of 24 carcasses necropsied, 11 had lesions consistent with avian chlamydiosis, including two that tested positive for infectious Chlamydophila psittaci, and 12 were positive for avian botulism type C. One bird tested positive for both avian botulism type C and C. psittaci. Of 61 apparently healthy water birds sampled and released, 13 had serologic evidence of C. psittaci infection and 7 were, at the time of capture, shedding infectious C. psittaci via the cloacal or oropharyngeal route. Since more routinely diagnosed disease conditions may mask avian chlamydiosis, these findings support the need for a comprehensive diagnostic investigation when determining the cause of a wildlife mortality event.

Benton Lake National Wildlife Refuge↗
USGS2016

In-flight turbulence benefits soaring birds

Birds use atmospheric updrafts to subsidize soaring flight. We observed highly variable soaring flight by Black Vultures ( Coragyps atratus ) and Turkey Vultures ( Cathartes aura ) in Virginia, USA, that was inconsistent with published descriptions of terrestrial avian flight. Birds engaging in this behavior regularly deviated vertically and horizontally from linear flight paths. We observed the soaring flight behavior of these 2 species to understand why they soar in this manner and when this behavior occurs. Vultures used this type of soaring mainly at low altitudes (<50 m), along forest edges, and when conditions were poor for thermal development. Because of the tortuous nature of this flight, we describe it as “contorted soaring.” The primary air movement suitable to subsidize flight at this altitude and under these atmospheric conditions is small-scale, shear-induced turbulence, which our results suggest can be an important resource for soaring birds because it permits continuous subsidized flight when other types of updraft are not available.

Virginia↗
USGS2014

Radar analysis of fall bird migration stopover sites in the northeastern U.S.

The national network of weather surveillance radars (WSR-88D) detects flying birds and is a useful remote-sensing tool for ornithological study. We used data collected during fall 2008 and 2009 by 16 WSR-88D radars in the northeastern U.S. to quantify the spatial distribution of landbirds during migratory stopover. We geo-referenced estimates based on radar reflectivity, of the density of migrants aloft at their abrupt evening exodus from daytime stopover sites, to the approximate locations from which they emerged. We classified bird stopover use by the magnitude and variation of radar reflectivity across nights; areas were considered “important” stopover sites for conservation if bird density was consistently high. We developed statistical models that predict potentially important stopover sites across the region, based on land cover, ground elevation, and geographic location. Large areas of regionally important stopover sites were located along the coastlines of Long Island Sound, throughout the Delmarva Peninsula, in areas surrounding Baltimore and Washington, along the western edge of the Adirondack Mountains, and within the Appalachian Mountains of southwestern Virginia and West Virginia. Locally important stopover sites generally were associated with deciduous forests embedded within landscapes dominated by developed or agricultural lands, or near the shores of major water bodies. Preserving or enhancing patches of natural habitat, particularly deciduous forests, in developed or agricultural landscapes and along major coastlines could be a priority for conservation plans addressing the stopover requirements of migratory landbirds in the northeastern U.S. Our maps of important stopover sites can be used to focus conservation efforts and can serve as a sampling frame for fieldwork to validate radar observations or for ecological studies of landbirds on migratory stopover.

The Condor↗