Search USGS⌕ Search

SEARCH · Search USGS

Results for “The R Journal”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 757 records · Page 42Linked to original sources

Synthesising empirical results to improve predictions of post-wildfire runoff and erosion response

Advances in research into wildfire impacts on runoff and erosion have demonstrated increasing complexity of controlling factors and responses, which, combined with changing fire frequency, present challenges for modellers. We convened a conference attended by experts and practitioners in post-wildfire impacts, meteorology and related research, including modelling, to focus on priority research issues. The aim was to improve our understanding of controls and responses and the predictive capabilities of models. This conference led to the eight selected papers in this special issue. They address aspects of the distinctiveness in the controls and responses among wildfire regions, spatiotemporal rainfall variability, infiltration, runoff connectivity, debris flow formation and modelling applications. Here we summarise key findings from these papers and evaluate their contribution to improving understanding and prediction of post-wildfire runoff and erosion under changes in climate, human intervention and population pressure on wildfire-prone areas.

International Journal of Wildland Fire↗

Evaluating the mid-infrared bi-spectral index for improved assessment of low-severity fire effects in a conifer forest

Remote sensing products provide a vital understanding of wildfire effects across a landscape, but detection and delineation of low- and mixed-severity fire remains difficult. While data provided by the Monitoring Trends in Burn Severity project (MTBS) are frequently used to assess severity in the United States, alternative indices can offer improvement to the measurement of low-severity fire effects and should be considered for future product development and adoption. This research note evaluated one such alternative, the mid-infrared bi-spectral index (MIRBI), which was developed in savannah ecosystems to isolate spectral changes caused by burning and reduce noise from other factors. MIRBI, differenced MIRBI (dMIRBI) and burn severity indices used by MTBS were assessed for spectral optimality at distinguishing severity and the ability to separate unburned and burned canopy in a conifer forest. The MIRBI indices were better at isolating changes caused by burning and demonstrated higher spectral separability, particularly at low severity. These findings suggest that MIRBI indices can provide an enhanced alternative or compliment to current MTBS products in high canopy cover forests for applications such as discernment of fire perimeters and unburned islands, as well as identification of low-severity fire effects.

International Journal of Wildland Fire↗

The use of multi-temporal Landsat Normalized Difference Vegetation Index (NDVI) data for mapping fuels in Yosemite National Park, USA

The objective of this study was to test the applicability of using Normalized Difference Vegetation Index (NDVI) values derived from a temporal sequence of six Landsat Thematic Mapper (TM) scenes to map fuel models for Yosemite National Park, USA. An unsupervised classification algorithm was used to define 30 unique spectral-temporal classes of NDVI values. A combination of graphical, statistical and visual techniques was used to characterize the 30 classes and identify those that responded similarly and could be combined into fuel models. The final classification of fuel models included six different types: short annual and perennial grasses, tall perennial grasses, medium brush and evergreen hardwoods, short-needled conifers with no heavy fuels, long-needled conifers and deciduous hardwoods, and short-needled conifers with a component of heavy fuels. The NDVI, when analysed over a season of phenologically distinct periods along with ancillary data, can elicit information necessary to distinguish fuel model types. Fuels information derived from remote sensors has proven to be useful for initial classification of fuels and has been applied to fire management situations on the ground.

International Journal of Remote Sensing↗

An evaluation of sampling strategies to improve precision of estimates of gross change in land use and land cover

Statistical sampling offers a cost-effective, practical alternative to complete-coverage mapping for the objective of estimating gross change in land cover over large areas. Because land cover change is typically rare, the sampling strategy must take advantage of design and analysis tools that enhance precision. Using two populations of land cover change in the eastern United States, we demonstrate that the choice of sampling unit size and use of a survey sampling regression estimator can significantly improve precision with only a minor increase in cost.

International Journal of Remote Sensing↗

Mapping the invasive species, Chinese tallow, with EO1 satellite Hyperion hyperspectral image data and relating tallow occurrences to a classified Landsat Thematic Mapper land cover map

Our objective was to provide a realistic and accurate representation of the spatial distribution of Chinese tallow (Triadica sebifera) in the Earth Observing 1 (EO1) Hyperion hyperspectral image coverage by using methods designed and tested in previous studies. We transformed, corrected, and normalized Hyperion reflectance image data into composition images with a subpixel extraction model. Composition images were related to green vegetation, senescent foliage and senescing cypress-tupelo forest, senescing Chinese tallow with red leaves ('red tallow'), and a composition image that only corresponded slightly to yellowing vegetation. These statistical and visual comparisons confirmed a successful portrayal of landscape features at the time of the Hyperion image collection. These landscape features were amalgamated in the Landsat Thematic Mapper (TM) pixel, thereby preventing the detection of Chinese tallow occurrences in the Landsat TM classification. With the occurrence in percentage of red tallow (as a surrogate for Chinese tallow) per pixel mapped, we were able to link dominant land covers generated with Landsat TM image data to Chinese tallow occurrences as a first step toward determining the sensitivity and susceptibility of various land covers to tallow establishment. Results suggested that the highest occurrences and widest distribution of red tallow were (1) apparent in disturbed or more open canopy woody wetland deciduous forests (including cypress-tupelo forests), upland woody land evergreen forests (dominantly pines and seedling plantations), and upland woody land deciduous and mixed forests; (2) scattered throughout the fallow fields or located along fence rows separating active and non-active cultivated and grazing fields, (3) found along levees lining the ubiquitous canals within the marsh and on the cheniers near the coastline; and (4) present within the coastal marsh located on the numerous topographic highs. ?? 2005 US Government.

International Journal of Remote Sensing↗

Global irrigated area map (GIAM), derived from remote sensing, for the end of the last millennium

A Global Irrigated Area Map (GIAM) has been produced for the end of the last millennium using multiple satellite sensor, secondary, Google Earth and groundtruth data. The data included: (a) Advanced Very High Resolution Radiometer (AVHRR) 3-band and Normalized Difference Vegetation Index (NDVI) 10 km monthly time-series for 1997-1999, (b) Syste me pour l'Observation de la Terre Vegetation (SPOT VGT) NDVI 1 km monthly time series for 1999, (c) East Anglia University Climate Research Unit (CRU) rainfall 50km monthly time series for 1961-2000, (d) Global 30 Arc-Second Elevation Data Set (GTOPO30) 1 km digital elevation data of the World, (e) Japanese Earth Resources Satellite-1 Synthetic Aperture Radar (JERS-1 SAR) data for the rain forests during two seasons in 1996 and (f) University of Maryland Global Tree Cover 1 km data for 1992-1993. A single mega-file data-cube (MFDC) of the World with 159 layers, akin to hyperspectral data, was composed by re-sampling different data types into a common 1 km resolution. The MFDC was segmented based on elevation, temperature and precipitation zones. Classification was performed on the segments. Quantitative spectral matching techniques (SMTs) used in hyperspectral data analysis were adopted to group class spectra derived from unsupervised classification and match them with ideal or target spectra. A rigorous class identification and labelling process involved the use of: (a) space-time spiral curve (ST-SC) plots, (b) brightness-greenness-wetness (BGW) plots, (c) time series NDVI plots, (d) Google Earth very-high-resolution imagery (VHRI) 'zoom-in views' in over 11 000 locations, (e) groundtruth data broadly sourced from the degree confluence project (3 864 sample locations) and from the GIAM project (1 790 sample locations), (f) high-resolution Landsat-ETM+ Geocover 150m mosaic of the World and (g) secondary data (e.g. national and global land use and land cover data). Mixed classes were resolved based on decision tree algorithms and spatial modelling, and when that did not work, the problem class was used to mask and re-classify the MDFC, and the class identification and labelling protocol repeated. The sub-pixel area (SPA) calculations were performed by multiplying full-pixel areas (FPAs) with irrigated area fractions (IAFs) for every class. A 28 class GIAM was produced and the area statistics reported as: (a) annualized irrigated areas (AIAs), which consider intensity of irrigation (i.e. sum of irrigated areas from different seasons in a year plus continuous year-round irrigation or gross irrigated areas), and (b) total area available for irrigation (TAAI), which does not consider intensity of irrigation (i.e. irrigated areas at any given point of time plus the areas left fallow but 'equipped for irrigation' at the same point of time or net irrigated areas). The AIA of the World at the end of the last millennium was 467 million hectares (Mha), which is sum of the non-overlapping areas of: (a) 252 Mha from season one, (b) 174 Mha from season two and (c) 41 Mha from continuous year-round crops. The TAAI at the end of the last millennium was 399 Mha. The distribution of irrigated areas is highly skewed amongst continents and countries. Asia accounts for 79% (370 Mha) of all AIAs, followed by Europe (7%) and North America (7%). Three continents, South America (4%), Africa (2%) and Australia (1%), have a very low proportion of the global irrigation. The GIAM had an accuracy of 79-91%, with errors of omission not exceeding 21%, and the errors of commission not exceeding 23%. The GIAM statistics were also compared with: (a) the United Nations Food and Agricultural Organization (FAO) and University of Frankfurt (UF) derived irrigated areas and (b) national census data for India. The relationships and causes of differences are discussed in detail. The GIAM products are made available through a web portal (http://www.iwmigiam.org). ?? 2009 Taylor & Francis.

International Journal of Remote Sensing↗

On the terminology of the spectral vegetation index (NIR – SWIR)/(NIR + SWIR)

The spectral vegetation index (ρNIR – ρSWIR)/(ρNIR + ρSWIR), where ρNIR and ρSWIR are the near-infrared (NIR) and shortwave-infrared (SWIR) reflectances, respectively, has been widely used to indicate vegetation moisture condition. This index has multiple names in the literature, including infrared index (II), normalized difference infrared index (NDII), normalized difference water index (NDWI), normalized difference moisture index (NDMI), land surface water index (LSWI), and normalized burn ratio (NBR), etc. After reviewing each term’s definition, associated sensors, and channel specifications, we found that the index consists of three variants, differing only in the SWIR region (1.2–1.3 µm, 1.55–1.75 µm, or 2.05–2.45 µm). Thus, three terms are sufficient to represent these three SWIR variants; other names are redundant and therefore unnecessary. Considering the spectral representativeness, the term’s popularity, and the “rule of priority” in scientific nomenclature, NDWI, NDII, and NBR, each corresponding to the three SWIR regions, are more preferable terms.

International Journal of Remote Sensing↗

An approach to regional wetland digital elevation model development using a differential global positioning system and a custom-built helicopter-based surveying system

Accurate topographic data are critical to restoration science and planning for the Everglades region of South Florida, USA. They are needed to monitor and simulate water level, water depth and hydroperiod and are used in scientific research on hydrologic and biologic processes. Because large wetland environments and data acquisition challenge conventional ground-based and remotely sensed data collection methods, the United States Geological Survey (USGS) adapted a classical data collection instrument to global positioning system (GPS) and geographic information system (GIS) technologies. Data acquired with this instrument were processed using geostatistics to yield sub-water level elevation values with centimetre accuracy (±15 cm). The developed database framework, modelling philosophy and metadata protocol allow for continued, collaborative model revision and expansion, given additional elevation or other ancillary data.

Florida↗

Lidar-based mapping of flood control levees in south Louisiana

Flood protection in south Louisiana is largely dependent on earthen levees, and in the aftermath of Hurricane Katrina the state’s levee system has received intense scrutiny. Accurate elevation data along the levees are critical to local levee district managers responsible for monitoring and maintaining the extensive system of non-federal levees in coastal Louisiana. In 2012, high resolution airborne lidar data were acquired over levees in Lafourche Parish, Louisiana, and a mobile terrestrial lidar survey was conducted for selected levee segments using a terrestrial lidar scanner mounted on a truck. The mobile terrestrial lidar data were collected to test the feasibility of using this relatively new technology to map flood control levees and to compare the accuracy of the terrestrial and airborne lidar. Metrics assessing levee geometry derived from the two lidar surveys are also presented as an efficient, comprehensive method to quantify levee height and stability. The vertical root mean square error values of the terrestrial lidar and airborne lidar digital-derived digital terrain models were 0.038 m and 0.055 m, respectively. The comparison of levee metrics derived from the airborne and terrestrial lidar-based digital terrain models showed that both types of lidar yielded similar results, indicating that either or both surveying techniques could be used to monitor geomorphic change over time. Because airborne lidar is costly, many parts of the USA and other countries have never been mapped with airborne lidar, and repeat surveys are often not available for change detection studies. Terrestrial lidar provides a practical option for conducting repeat surveys of levees and other terrain features that cover a relatively small area, such as eroding cliffs or stream banks, and dunes.

Louisiana↗

The potential role of very high-resolution imagery to characterise lake, wetland and stream systems across the Prairie Pothole Region, United States

Aquatic features critical to watershed hydrology range widely in size from narrow, shallow streams to large, deep lakes. In this study we evaluated wetland, lake, and river systems across the Prairie Pothole Region to explore where pan-sharpened high-resolution (PSHR) imagery, relative to Landsat imagery, could provide additional data on surface water distribution and movement, missed by Landsat. We used the monthly Global Surface Water (GSW) Landsat product as well as surface water derived from Landsat imagery using a matched filtering algorithm (MF Landsat) to help consider how including partially inundated Landsat pixels as water influenced our findings. The PSHR outputs (and MF Landsat) were able to identify ~60–90% more surface water interactions between waterbodies, relative to the GSW Landsat product. However, regardless of Landsat source, by documenting many smaller (<0.2 ha), inundated wetlands, the PSHR outputs modified our interpretation of wetland size distribution across the Prairie Pothole Region.

Prairie Pothole Region↗

Geochemical controls on microbial nitrate-dependent U(IV) oxidation

After reductive immobilization of uranium, the element may be oxidized and remobilized in the presence of nitrate by the activity of dissimilatory nitrate-reducing bacteria. We examined controls on microbially mediated nitrate-dependent U(IV) oxidation in landfill leachate-impacted subsurface sediments. Nitrate-dependent U(IV)-oxidizing bacteria were at least two orders of magnitude less numerous in these sediments than glucose- or Fe(II)-oxidizing nitrate-reducing bacteria and grew more slowly than the latter organisms, suggesting that U(IV) is ultimately oxidized by Fe(III) produced by nitrate-dependent Fe(II)-oxidizing bacteria or by oxidation of Fe(II) by nitrite that accumulates during organotrophic dissimilatory nitrate reduction. We examined the effect of nitrate and reductant concentration on nitrate-dependent U(IV) oxidation in sediment incubations and used the initial reductive capacity (RDC = [reducing equivalents] - [oxidizing equivalents]) of the incubations as a unified measurement of the nitrate or reductant concentration. When we lowered the RDC with progressively higher nitrate concentrations, we observed a corresponding increase in the extent of U(IV) oxidation, but did not observe this relationship between RDC and U(IV) oxidation rate, especially when RDC > 0, suggesting that nitrate concentration strongly controls the extent, but not the rate of nitrate-dependent U(IV) oxidation. On the other hand, when we raised the RDC in sediment incubations with progressively higher reductant (acetate, sulfide, soluble Fe(II), or FeS) concentrations, we observed progressively lower extents and rates of nitrate-dependent U(IV) oxidation. Acetate was a relatively poor inhibitor of nitrate-dependent U(IV) oxidation, while Fe(II) was the most effective inhibitor. Based on these results, we propose that it may be possible to predict the stability of U(IV) in a bioremediated aquifer based on the geochemical characteristics of that aquifer.

Geomicrobiology Journal↗

Acetate availability and its influence on sustainable bioremediation of Uranium-contaminated groundwater

Field biostimulation experiments at the U.S. Department of Energy's Integrated Field Research Challenge (IFRC) site in Rifle, Colorado, have demonstrated that uranium concentrations in groundwater can be decreased to levels below the U.S. Environmental Protection Agency's (EPA) drinking water standard (0.126 μM). During successive summer experiments – referred to as “Winchester” (2007) and “Big Rusty” (2008) - acetate was added to the aquifer to stimulate the activity of indigenous dissimilatory metal-reducing bacteria capable of reductively immobilizing uranium. The two experiments differed in the length of injection (31 vs. 110 days), the maximum concentration of acetate (5 vs. 30 mM), and the extent to which iron reduction (“Winchester”) or sulfate reduction (“Big Rusty”) was the predominant metabolic process. In both cases, rapid removal of U(VI) from groundwater occurred at calcium concentrations (6 mM) and carbonate alkalinities (8 meq/L) where Ca-UO 2 -CO 3 ternary complexes constitute >90% of uranyl species in groundwater. Complete consumption of acetate and increased alkalinity (>30 meq/L) accompanying the onset of sulfate reduction corresponded to temporary increases in U(VI); however, by increasing acetate concentrations in excess of available sulfate (10 mM), low U(VI) concentrations (0.1–0.05 μM) were achieved for extended periods of time (>140 days). Uniform delivery of acetate during “Big Rusty” was impeded due to decreases in injection well permeability, likely resulting from biomass accumulation and carbonate and sulfide mineral precipitation. Such decreases were not observed during the short-duration “Winchester” experiment. Terminal restriction fragment length polymorphism (TRFLP) analysis of 16S rRNA genes demonstrated that Geobacter sp. and Geobacter -like strains dominated the groundwater community profile during iron reduction, with 13 C stable isotope probing (SIP) results confirming these strains were actively utilizing acetate to replicate their genome during the period of optimal U(VI) removal. Gene transcript levels during “Big Rusty” were quantified for Geobacter -specific citrate synthase ( gltA ), with ongoing transcription during sulfate reduction indicating that members of the Geobacteraceae were still active and likely contributing to U(VI) removal. The persistence of reducible Fe(III) in sediments recovered from an area of prolonged (110-day) sulfate reduction is consistent with this conclusion. These results indicate that acetate availability and its ability to sustain the activity of iron- and uranyl-respiring Geobacter strains during sulfate reduction exerts a primary control on optimized U(VI) removal from groundwater at the Rifle IFRC site over extended time scales (>50 days).

Geomicrobiology Journal↗

Evaluation of 55Fe as a tracer of Fe(III) reduction in aquatic sediments

The potential utility of 55 Fe as a tracer for Fe(III) reduction in aquatic sediments was evaluated using freshwater sediments from the Potomac River, Md, in which Fe(III) reduction was the predominant terminal electron accepting process. In laboratory incubations of sediments amended with poorly crystalline 55 Fe(III) oxide, the accumulation of 55 Fe in Fe(II) over time paralleled Fe(II) production. However, within 1 h of addition of 55 Fe(III) oxide, significant quantities of 55 Fe were recovered in extractable (1 M sodium acetate, pH 5) and soluble Fe(II) pools. There was proportionately more 55 Fe(II) activity in sediments with higher Fe(II) concentrations. These results suggest that there was rapid isotopic exchange between 55 Fe in poorly crystalline Fe(III) oxide and the Fe(II) pools. Because of this exchange, 55 Fe could not be used to trace Fe(III) reduction in sediments in the manner that 35 SO 4 2− is used to trace sulfate reduction. Although accumulation of 55 Fe in Fe(II) pools paralleled unla‐beled Fe(II) production, given the relative ease with which Fe(II) pools in sediments can be measured there is no apparent advantage to using 55 Fe to follow Fe(III) reduction.

Geomicrobiology Journal↗

Trace elements in lake sediment, macrozoobenthos, and fish near a coal ash disposal basin

Samples of lake sediment, macrozoobenthos, and fish were collected during 1983 and 1984 near a coal ash disposal basin situated on the western shoreline of Lake Erie. Neutron activation analysis was used to determine if potentially toxic trace elements were present in higher concentrations at stations near the basin than at reference stations a few kilometers away. Of the 29 trace elements examined, arsenic and cobalt were significantly ( p <0.05) more concentrated in sediment nearest the coal ash basin except in spring, when little or no difference was detected. Arsenic and bromine were significantly higher in oligochaetes, and selenium was significantly higher in both oligochaetes and chironomids taken from proximal stations than in those taken from reference stations. Selenium, bromine, cobalt, nickel, and chromium were higher in young-of-the-year brown bullheads taken nearer the disposal basin in fall 1983. Selenium was higher in adult spottail shiners taken at the proximal station in spring 1984, and bromine was higher in yearling white bass from the proximal station in fall 1983 and 1984. None of the trace elements was higher in adult yellow perch or adult brown bullheads at any time. Fewer spottail shiners and yearling white bass were caught close to the disposal basin than far away, which may indicate avoidance by these fish of increased concentrations of trace elements contained within the ash effluent.

Journal of Freshwater Ecology↗

Morphometric differentiation of American shad and white sucker eggs from riverine samples

We developed a statistical method to distinguish the large demersal eggs of American shad from those of white sucker in riverine samples using egg morphometric analysis. Eggs were first screened by total diameter in deionized water according to ranges reported in the published literature. Differences in relative yolk diameter between the two species were then determined statistically from known museum sources. Only those eggs with relative yolk diameters greater than two standard deviations below the mean for white sucker eggs were considered to be American shad eggs. The criteria for American shad eggs were total diameter ≥2.3 nm and relative yolk diameter ≤66%. A partial test of the model showed predicted identity to agree with observed identity for 74 out of 75 shad eggs.

Journal of Freshwater Ecology↗

Pharyngeal teeth of the freshwater drum ( Aplodinotus grunniens ) a predator of the zebra mussel ( Dreissena polymorpha )

The morphology of pharyngeal teeth of freshwater drum ( Aplodinotus grunniens ) was studied to determine changes that occur during growth of drum that may relate to consumption of zebra mussel ( Dreissena polymorpha ) by larger fish. Pharyngeal teeth were of three types. Cardiform teeth were replaced by villiform teeth, which were replaced by molariform teeth as the size class of drum increased. Molariform teeth comprised over 85% of total surface area of dentition in fish 265 mm long.

Journal of Freshwater Ecology↗

Fish species composition two second-order headwater streams the North Central Appalachians ecoregion

Fish species composition was determined for two second-order headwater streams within the North Central Appalachians ecoregion in northern Pennsylvania. The two streams were widely spaced geographically (over 193 km apart) and occurred in different drainage systems. Streams were sampled in the spring and fall over two years (1996–98) yielding similar fish assemblages. A total of five species was collected. Mottled sculpin ( Cottus bairdli ), slimy sculpin ( Cottus cognatus ), brook trout ( Salvetinus fontinalis ), and brown trout ( Salmo trutta ) were the dominant adult fishes. Two creek chubs ( Semotilus atromaculatus ) were also collected. No significant differences were found in sculpin weight, sculpin length, salmonid length, or brook trout length between streams. Paired t-tests detected eight significant seasonal differences within sites. Brook trout and mottled sculpin lengths were significantly greater in fall versus spring, while the reverse was found with slimy sculpins. Catches per unit effort were similar between the two streams, yielding 8.46 and 8.07 fish per minute of electrofishing. Both streams were very similar in faunal assemblages attributed to small, coldwater, high quality headwater streams in other regions.

Pennsylvanaia↗

Lake St. Clair zooplankton: Evidence for post-Dreissena changes

We surveyed the zooplankton of Lake St. Clair at 12 sites over ten dates from May to October 2000. Mean zooplankton density by site and date was 168.6 individuals/L, with Dreissena spp. veligers the most abundant taxon at 122.7 individuals/L. Rotifers, copepods, and cladocerans were far lower in mean abundance than in the early 1970s (rotifers, 20.9/L; copepods, 18.1/L; and cladocerans, 6.8/L). Species richness of zooplankton taxa in 2000 was 147, which was virtually unchanged from that of the first reported survey in 1894. Overall, the decline in abundance was greatest for rotifers (-90%) and about equal for cladocerans (-69%) and copepods (-66%). The decrease in abundance of Daphnia spp. was especially dramatic in Canadian waters. The decline in the southeastern region was significant for all three major groups of zooplankton, whereas in the northwestern region the decline was significant only for rotifers. From June to August 2000, Lake St. Clair open waters were numerically dominated by Dreissena spp. veligers, with a reduced abundance of rotifers and crustaceans compared to pre-Dreissena spp. surveys. Mean nutrient concentrations were not different from the 1970s, but Secchi depth (greater) and chlorophyll a concentration (lower) were. Disproportionate reduction in rotifer abundance is consistent with hypotheses implicating direct consumption by settled Dreissena spp. Reduction of crustaceans is likely due to more complex interactions including removal of nauplii as well as resource competition for phytoplankton.

Michigan, Ontario↗