Search USGS⌕ Search

SEARCH · Search USGS

Results for “Stages”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 757 records · Page 42Linked to original sources

Effects of temperature on embryonic development of lake herring ( Coregonus artedii )

Embryonic development of lake herring ( Coregonus artedii ) was observed in the laboratory at 13 constant temperatures from 0.0 to 12.1 C and in Pickerel Lake (Washtenaw County, Michigan) at natural temperature regimes. Rate of development during incubation was based on progression of the embryos through 20 identifiable stages. An equation was derived to predict development stage at constant temperatures, on the general assumption that development stage (DS) is a function of time (days, D) and temperature (T). The equation should also be useful in interpreting estimates from future regressions that include other environmental variables that affect egg development. A second regression model, derived primarily for fluctuating temperatures, related development rate for stage j (DR j ), expressed as the reciprocal of time, to temperature (x). The generalized equation for a development stage is: DR j = ab x c x 2 d x 3 . In general, time required for embryos to reach each stage of development in Pickerel Lake agreed closely with the time predicted from this equation, derived from our laboratory observations. Hatching time was predicted within 1 day in 1969 and within 2 days in 1970. We used the equations derived with the second model to predict the effect of the superimposition of temperature increases of 1 and 2 C on the measured temperatures in Pickerel Lake. Conceivably, hatching dates could be affected sufficiently to jeopardize the first feeding of lake herring through loss of harmony between hatching date and seasonal food availability.

Michigan↗

The use of coded microwire tags mark-recapture studies of juvenile Caribbean spiny lobster, Panulirus argus

To evaluate the suitability of using coded microwire tags (CWTs) to mark early-benthic-stage Caribbean spiny lobster, Panulirus argus , we compared the survival, growth, and feeding of tagged and untagged lobsters held in the laboratory through the first five juvenile molts. We also examined the growth of 65 microwire-tagged lobsters released into the wild as early-benthic-stage juveniles. Tag retention rates of lobsters held in the laboratory were 86% for those tagged as first-stage juveniles and 96% for those tagged as second-stage juveniles; virtually all tag loss was confined to the first post-tag molt. Survival and growth rates of tagged second-stage juveniles in the laboratory did not significantly differ from those of untagged lobsters, but first-stage-tagged juveniles had lower growth rates than untagged lobsters did and a 25% post-tagging mortality rate. The mean growth rate of juveniles released into the wild was 0.82 mm CL/wk, but growth differed by season; no sex- or habitat-specific differences in growth were observed. Data obtained from these recaptured lobsters provide the first detailed estimates of growth of P . argus under natural conditions during the earliest part of their benthic life and illustrate the potential usefulness of coded microwire tags in mark-recapture investigations of juveniles for this and other species.

Florida↗

Use of monoclonal antibodies developed against chicken coccidia ( Eimeria ) to study invasion and development of Eimeria reichenowi in Florida sandhill cranes ( Grus canadensis )

Eimeria gruis and Eimeria reichenowi are common coccidial parasites of a number of species of cranes. Until recently, little was known about either the site for invasion or the dynamics of early development of the crane coccidia because of the difficulty of identifying sporozoites and early developmental stages of these parasites by conventional staining methods. In the present study, monoclonal antibodies (MAbs) elicited against Eimeria spp. of chickens and turkeys were found to cross-react with sporozoites and developmental stages of E. reichenowi in the tissues of Florida sandhill cranes ( Grus canadensis ). With these Mabs, E. reichenowi sporozoites were found in specimens taken at 6 hr postinoculation (PI) from just proximal to Meckel's diverticulum in the jejunum to the ileocecal juncture. Fewer were found in the ceca and rectum and none in the duodenal loop. At 24 hr PI, there were markedly fewer sporozoites and their location had shifted to the duodenum. No stages were seen in intestinal cells at 5 days PI (DPI), but trophozoites had developed in the liver and spleen. At 10 DPI, sexual stages were detected in the intestine from the duodenal loop through Meckel's diverticulum but not in other organs. By 14 DPI, numerous developmental stages were detected in the intestine (ceca and jejunum), liver, and lungs but not in the heart, kidney, or brain. The number, location, and maturity of the stages in the ceca differed markedly from those in the jejunum.

Journal of Zoo and Wildlife Medicine↗

Two myxozoans from the urinary tract of topsmelt, Atherinops affinis

Two myxozoan species were observed in the kidney of topsmelt, Atherinops affinis , during a survey of parasites of estuarine fishes in the Carpinteria Salt Marsh Reserve, California. Fish collected on 3 dates in 2012 and 2013 were sectioned and examined histologically. Large extrasporogonic stages occurred in the renal interstitium of several fish from the first 2 collections (5/8, 11/20, respectively) and, in some fish, these replaced over 80% of the kidney. In addition, presporogonic and polysporogonic stages occurred in the lumen of the renal tubules, collecting ducts, and mesonephric ducts. The latter contained subspherical spores with up to 4 polar capsules, consistent with the genus Chloromyxum . For the third collection (15 May 2013, n = 30), we portioned kidneys for examination by histology, wet mount, and DNA extraction for small subunit ribosomal (SSU rDNA) gene sequencing. Histology showed the large extrasporogonic forms in the kidney interstitium of 3 fish and showed 2 other fish with subspherical myxospores in the lumen of the renal tubules with smooth valves and 2 spherical polar capsules consistent with the genus Sphaerospora. Chloromyxum -type myxospores were observed in the renal tubules of 1 fish by wet mount. Sequencing of the kidney tissue from this fish yielded a partial SSU rDNA sequence of 1,769 base pairs (bp). Phylogenetic reconstruction suggested this organism to be a novel species of Chloromyxum , most similar to Chloromyxum careni (84% similarity). In addition, subspherical myxospores with smooth valves and 2 spherical polar capsules consistent with the genus Sphaerospora were observed in wet mounts of 2 fish. Sequencing of the kidney tissue from 1 fish yielded a partial SSU rDNA sequence of 1,937 bp. Phylogenetic reconstruction suggests this organism to be a novel species of Sphaerospora most closely related to Sphaerospora epinepheli (93%). We conclude that these organisms represent novel species of the genera Chloromyxum and Sphaerospora based on host, location, and SSU rDNA sequence. We further conclude that the formation of large, histozoic extrasporogonic stages in the renal interstitium represents developmental stages of Chloromyxum species for the following reasons: (1) Large extrasporogonic stages were only observed in fish with Chloromyxum -type spores developing within the renal tubules, (2) a DNA sequence consistent with the Chloromyxum sp. was only detected in fish with the large extrasporogonic stages, and (3) several Sphaerospora species have extrasporogonic forms, but they are considerably smaller and are composed of far fewer cells.

California↗

Alunite in the Pascua-Lama high-sulfidation deposit: Constraints on alteration and ore deposition using stable isotope geochemistry

The Pascua-Lama high-sulfidation system, located in the El Indio-Pascua belt of Chile and Argentina, contains over 16 million ounces (Moz) Au and 585 Moz Ag. The deposit is hosted primarily in granite rocks of Triassic age with mineralization occurring in several discrete Miocene-age phreatomagmatic breccias and related fracture networks. The largest of these areas is Brecha Central, which is dominated by a mineralizing assemblage of alunite-pyrite-enargite and precious metals. Several stages of hydrothermal alteration related to mineralization are recognized, including all types of alunite-bearing advanced argillic assemblages (magmatic-hydrothermal, steam-heated, magmatic steam, and supergene). The occurrence of alunite throughout the paragenesis of this epithermal system is unusual and detailed radiometric, mineralogical, and stable isotope studies provide constraints on the timing and nature of alteration and mineralization of the alunite-pyrite-enargite assemblage in the deposit. Early (preore) alteration occurred prior to ca. 9 Ma and consists of intense silicic and advanced argillic assemblages with peripheral argillic and widespread propylitic zones. Alunite of this stage occurs as fine intergrowths of alunite-quartz ± kaolinite, dickite, and pyrophyllite that selectively replaced feldspars in the host rock. Stable isotope systematics suggest a magmatic-hydrothermal origin with a dominantly magmatic fluid source. Alunite is coeval with the main stage of Au-Ag-Cu mineralization (alunite-pyrite-enargite assemblage ore), which has been dated at approximately 8.8 Ma. Ore-stage alunite has an isotopic signature similar to preore alunite, and Δ 34 S alun-py data indicate depositional temperatures of 245° to 305°C. The δ D and δ 18 O data exclude significant involvement of meteoric water during mineralization and indicate that the assemblage formed from H 2 S-dominated magmatic fluids. Thick steam-heated alteration zones are preserved at the highest elevations in the deposit and probably formed from oxidation of H 2 S during boiling of the magmatic ore fluids. Coarsely crystalline magmatic steam alunite (8.4 Ma) is restricted to the near-surface portion of Brecha Central. Postmineral alunite ± jarosite were previously interpreted to be supergene crosscutting veins and overgrowths, although stable isotope data suggest a mixed magmatic-meteoric origin for this late-stage alteration. Only late jarosite veinlets (8.0 Ma) associated with fine-grained pseudocubic alunite have a supergene isotopic signature. The predominance of magmatic fluids recorded throughout the paragenesis of the Pascua system is atypical for high-sulfidation deposits, which typically involve significant meteoric water in near-surface and peripheral alteration and, in some systems, even ore deposition. At Pascua, the strong magmatic signature of both alteration and main-stage (alunite-pyrite-enargite assemblage) ore is attributed to limited availability of meteoric fluids. This is in agreement with published data for the El Indio-Pascua belt, indicating an event of uplift and subsequent pediment incision, as well as a transition from semiarid to arid climatic conditions, during the formation of the deposit in the mid to late Miocene.

Economic Geology↗

Gold enrichment and the Bi-Au association in pyrrhotite-rich massive sulfide deposits, Escanaba trough, Southern Gorda Ridge

High gold contents (to 10.1 ppm, avg 1.4 ppm, n = 34) occur in pyrrhotite-rich massive sulfide samples from the sediment-covered floor of the Escanaba trough, the slow-spreading, southernmost segment of Gorda Ridge. These concentrations reflect the presence of primary gold, formed during high-temperature hydrothermal activity in mounds and chimneys, and secondary gold deposited during sea-floor weathering of massive sulfide. Primary gold occurs as fine-grained (<2 ??m) gold, electrum, maldonite (Au2Bi), and a rare unnamed mineral (AuBi5S4) and is texturally and temporally associated with sulfarsenides (arsenopyrite, glaucodot, alloclastite, and cobaltite), arsenides (lo??llingite and safflorite), Bi minerals (native bismuth, Bi tellurides, Bi-Te sulfides, and bismuthinite), and galena. Larger (>2 ??m) secondary gold grains have a porous, flaky morphology and occur in samples in which pyrrhotite is oxidized and replaced by Fe oxyhydroxides, Fe sulfate, and sulfur. Mounds and chimneys dominated by pyrrhotite and containing lesser amounts of isocubanite, chalcopyrite, and Fe-rich sphalerite were formed by high-temperature (estimated range 325??-275??C), reduced, low-sulfur vent fluids. The mineral and fluid compositions during this main stage of hydrothermal venting reflect subsurface interaction between circulating hydrothermal fluids and turbiditic sediment containing as much as 1.1 percent organic carbon. As the deposition of pyrrhotite, Cu-Fe sulfides, and sphalerite waned, a volumetrically minor suite of sulfarsenide, arsenide, Bi, and Au minerals was deposited from highly reduced, late main-stage fluids diffusing through mounds and chimneys. The low solubility of Au as a bisulfide complex and the absence of fluid mixing during this stage of hydrothermal activity apparently inhibited the precipitation of gold directly from solution. Instead, gold precipitation is thought to be linked to elevated concentrations of Bi in the late main-stage fluids. The textural relationships of Au and Bi minerals in pyrrhotite-rich samples, low melting point of native bismuth (271.4??C), and recent experimental results on Au and Bi in hydrothermal fluids contribute to the hypothesis that gold was effectively scavenged from the Escanaba trough vent fluids by coexisting droplets of liquid bismuth. Additional phase relationships of alloys in the Au-Bi system indicate that deposition of native bismuth and maldonite occurred at temperatures as low as 241??C. Bismuth droplets trapped in void space between main-stage mineral grains scavenged gold from ambient hydrothermal fluid to a greater extent than bismuth enclosed by late-forming pyrrhotite. The limited solid solution of Au in Bi can explain the apparent exsolution texture in which gold blebs are hosted by native bismuth. The electrum, native bismuth (with gold inclusions), and galena represent the last traces of gold mineralization from late main-stage fluids. During sea-floor weathering and the oxidation of pyrrhotite in the mounds and chimneys, secondary gold formed as aggregates of colloidal particles along pH gradients between acidic pore waters and ambient seawater. Gold was mobilized from earlier formed primary gold minerals and transported as aqueous chloride complexes. The reduction of Au(III) by residual Fe2+ in partly altered pyrrhotite and adsorption of colloids by Fe oxyhydroxides may have influenced the location of secondary gold grains within the alteration front. Solubility differences between gold and silver chloride complexes at low temperature account for the low Ag content of secondary gold grains. The high concentrations of Bi, and thus the association of Au and Bi minerals in pyrrhotite-rich massive sulfide, can be ascribed to the extensive interaction of hydrothermal fluids with sediment in the Escanaba trough. In contrast, the absence of the Au-Bi association in massive sulfides at other ridges, including other sediment-covered sites at Middle Valley and the Guaymas basin

Economic Geology↗

Alteration and fluid inclusion studies of the porphyry copper ore body at Bingham, Utah

Distribution patterns for biotitic alteration, sericitic alteration, and distinctive fluid-inclusion types in igneous host rocks of the porphyry copper ore body at Bingham, Utah, have been determined by petrographic examination of about 300 samples. These patterns are related to differences in original rock composition, variations in physical-chemical conditions during periods of intrusion and mineralization, and spatial position within the ore body. The distribution of biotitic (potassium-silicate) alteration assemblages and high-salinity fluid inclusions generally follows the crudely triangular form of the disseminated copper ore zone. Variations in abundance of hydrothermal biotite are attributed to differences in original mafic mineral content of the igneous host rocks. Biotitic alteration and initial copper mineralization were accomplished by high-salinity fluids concentrated during final crystallization of the monzonitic parent magma; genetic continuity between magmatic and hydrothermal stages is indicated . Pervasive sericitic alteration of plagioclase is confined to rocks in the northern one-third of the Bingham stock; a subzone of argillic alteration in the north-central part of the ore body occurs within the broader area of sericitic alteration. Fluids responsible for sericitic and argillic alteration were channeled by a broad zone of northeast-trending fractures. Hydrothermal minerals and high-salinity fluid inclusions occur within a large volume of shattered rock. Boiling of fluids during crystallization of the aplitic porphyry may account for the shattering. Sericitic (and argillic) alteration were apparently super-imposed on the earlier biotitic assemblage as the hydrothermal system cooled. Cooling and hydrolytic alteration were promoted by progressive introduction of meteoric waters. The many generations of inclusions trapped from boiling fluids in the temperature range 400 degrees to 600 degrees C suggest that the system was recharged repeatedly during the period of mineralization. Estimated fluid pressures of about 800 bars in the early stages of mineralization correspond to a lithostatic load of about 3 km; pressures were even lower (less than 200 bars) in the later stages and were probably controlled by hydrostatic conditions. Distribution patterns for biotitic alteration, sericitic alteration, and distinctive fluid-inclusion types in igneous host rocks of the porphyry copper ore body at Bingham, Utah, have been determined by petrographic examination of about 300 samples. These patterns are related to differences in original rock composition, variations in physical-chemical conditions during periods of intrusion and mineralization, and spatial position within the ore body.The distribution of biotitic (potassium-silicate) alteration assemblages and high-salinity fluid inclusions generally follows the crudely triangular form of the disseminated copper ore zone. Variations in abundance of hydrothermal biotite are attributed to differences in original mafic mineral content of the igneous host rocks. Biotitic alteration and initial copper mineralization were accomplished by high-salinity fluids concentrated during final crystallization of the monzonitic parent magma; genetic continuity between magmatic and hydrothermal stages is indicated.Pervasive sericitic alteration of plagioclase is confined to rocks in the northern one-third of the Bingham stock; a subzone of argillic alteration in the north-central part of the ore body occurs within the broader area of sericitic alteration. Fluids responsible for sericitic and argillic alteration were channeled by a broad zone of northeast-trending fractures.Hydrothermal minerals and high-salinity fluid inclusions occur within a large volume of shattered rock. Boiling of fluids during crystallization of the aplitic porphyry may account for the shattering. Sericitic (and argillic) alteration were apparently super-imposed on the earlier biotitic assemblage as the hydrothermal system cooled. Cooling and hydrolytic alteration were promoted by progressive introduction of meteoric waters. The many generations of inclusions trapped from boiling fluids in the temperature range 400 degrees to 600 degrees C suggest that the system was recharged repeatedly during the period of mineralization. Estimated fluid pressures of about 800 bars in the early stages of mineralization correspond to a lithostatic load of about 3 km; pressures were even lower (less than 200 bars) in the later stages and were probably controlled by hydrostatic conditions.

Utah↗

Experimental hybridization among five species of lampreys from the Great Lakes

Experimental hybridization among five species of lampreys of the Upper Great Lakes routinely produced embryos through stage 8, and four crosses produced embryos to the larval stage. Three critical periods in the embryogenesis of hybrid lampreys were between stages 8 and 9, among stages 10, 11, and 12, and at stage 15. Embryonic development in hybrid lamprey embryos is basically identical to that of controls and is identical to that of the sea lamprey (Petromyzon marinus). Synchrony of development was observed among stages of viable hybrids and their controls but lethal hybrids generally did not maintain such synchrony. The derivative species concept has been confirmed experimentally. Questions have been raised concerning some evidence cited in behalf of the appropriateness of the concept that nonparasitic lampreys are the derived species.

Copeia↗

2001 floods in the Red River of the North basin in eastern North Dakota and western Minnesota

The Red River of the North is a complex river system in the north-central plains of the United States. The river continues to impact the people and property within its basin. During the spring of 2001, major flooding occurred for the second time in four years on the Red River of the North and its many tributaries in eastern North Dakota and western Minnesota. Unlike the 1997 floods, which were the result of record-high snowpacks region-wide and a late spring blizzard, the 2001 floods were the result of above-average soil moistures in some areas of the basin, rapid melting of above-average snowpacks in the upper basin, and heavy rainfall that swept across the region on April 7, 2001. The U.S. Geological Survey (USGS), one of the principal Federal agencies responsible for the collection and interpretation of water-resources data, works with other Federal, State, and local agencies to ensure that accurate and timely data are available for making decisions regarding the public's welfare. This report presents preliminary water-resources 2001 flood data that were obtained from selected streamflow-gaging stations located in the Red River of the North Basin. Flooding in eastern North Dakota and western Minnesota usually is caused by spring snowmelt, and the severity of the flooding is affected by (1) substantial precipitation in the fall that produces high levels of soil moisture, (2) above-normal snowfall in the winter, (3) moist, frozen ground that prohibits infiltration of moisture, (4) a late spring thaw, (5) above-normal precipitation during spring thaw, and (6) ice jams (temporary dams of ice) on rivers and streams. Stream stages (height of water in a stream above an arbitrarily established datum) and discharges measured by USGS personnel at streamflow-gaging stations are used to define a unique relation between stage and discharge. This relation, commonly called a rating curve, may not be well defined at extreme high discharges because these discharges are rare events of short duration and have unstable conditions that often make measurement extremely difficult. Therefore, estimates for some peak discharges need to be extrapolated from rating curves extended to known peak stages. The peak discharges are used to determine the probability, often expressed in recurrence intervals, that a given discharge will be exceeded in the future. For example, a flood that has a 1-percent chance of exceedance in any given year would, on the long-term average, be expected to occur only about once a century; therefore, the flood would be termed a "100-year flood." However, the chance of such a flood occurring in any given year is 1 percent. Thus, a 100-year flood can occur in successive years at the same location. In some instances, recurrence interval estimates can be based on periods of regulated flow or made with historic adjustments when historic data are available. Historical peak stages and peak discharges and the 2001 peak stages, peak discharges, and recurrence intervals are shown in table 1. The streamflow-gaging stations are listed in downstream order by station number, and station locations are shown in figure 1. Revisions to the 2001 peak stages and peak discharges given in this preliminary report may occur as site surveys are completed and additional field data are reviewed in the upcoming months.

Open-File Report↗

Examination of flood characteristics at selected streamgages in the Meramec River Basin, eastern Missouri, December 2015–January 2016

Overview Heavy rainfall resulted in major flooding in the Meramec River Basin in eastern Missouri during late December 2015 through early January 2016. Cumulative rainfall from December 14 to 29, 2015, ranged from 7.6 to 12.3 inches at selected precipitation stations in the basin with flooding driven by the heaviest precipitation (3.9–9.7 inches) between December 27 and 29, 2015. Financial losses from flooding included damage to homes and other structures, damage to roads, and debris removal. Eight of 11 counties in the basin were declared a Federal Disaster Area. The U.S. Geological Survey (USGS), in cooperation with the U.S. Army Corps of Engineers and St. Louis Metropolitan Sewer District, operates multiple streamgages along the Meramec River and its primary tributaries including the Bourbeuse River and Big River. The period of record for streamflow at streamgages in the basin included in this report ranges from 24 to 102 years. Instrumentation in a streamgage shelter automatically makes observations of stage using a variety of methods (submersible pressure transducer, non-submersible pressure transducer, or non-contact radar). These observations are recorded autonomously at a predetermined programmed frequency (typically either 15 or 30 minutes) dependent on drainage-area size and concomitant flashiness of the stream. Although stage data are important, streamflow data are equally or more important for streamflow forecasting, water-quality constituent loads computation, flood-frequency analysis, and flood mitigation planning. Streamflows are computed from recorded stage data using an empirically determined relation between stage and streamflow termed a “rating.” Development and verification of the rating requires periodic onsite discrete measurements of streamflow throughout time and over the range of stages to define local hydraulic conditions. The purpose of this report is to examine characteristics of flooding that occurred in the Meramec River Basin in December 2015–January 2016 including peak stages, peak streamflows, and the flood-frequency statistics associated with the peak flows. A comparison between the December 2015–January 2016 flood and a similar flood in December 1982 in the Meramec River Basin also is included.

Missouri↗

Population and habitat analyses for greater sage-grouse (Centrocercus urophasianus) in the bi-state distinct population segment—2018 update

Executive Summary The Bi-State Distinct Population Segment (Bi-State DPS) of greater sage-grouse ( Centrocercus urophasianus , hereinafter “sage-grouse”) represents a genetically distinct and geographically isolated population that straddles the border between Nevada and California. The primary threat to these sage-grouse populations is the expansion of single-leaf pinyon ( Pinus monophylla ) and Utah juniper ( Juniperus osteosperma ) into sagebrush ecosystems, which fragments and reduces population connectivity and survival. Other important threats include low water availability during brood-rearing, particularly during drought, and increased predation by common ravens ( Corvus corax ), a generalist predator often associated with anthropogenic resource subsidies. Although the Bi-State DPS occurs at high elevations relative to sage-grouse range-wide, changes in historical wildfire cycles and the conversion of native shrubs to invasive annual grasslands still threaten these populations. The Bi-State DPS has undergone multiple federal status assessments and associated litigation. For example, in October of 2013, the Bi-State DPS was proposed for listing as threatened under the Endangered Species Act of 1973 by the U.S. Fish and Wildlife Service (USFWS), then withdrawn in April 2015. The withdrawal decision was challenged, and in May 2018, a Federal district court ordered the withdrawal decision to be vacated, and USFWS was required to re-open the October 2013 listing evaluation. In response, the U.S. Geological Survey (USGS), with State and Federal collaborators, embarked on a multipronged analysis to provide current and best available science regarding population status of sage-grouse within the Bi-State DPS. Using data from a long-term monitoring program, we carried out four analytical study objectives, and here, we provide preliminary results of these analyses. First, we used integrated population modeling (IPM) to predict annual population abundance and annual finite rate of population change for the Bi-State DPS, as a whole, and for each subpopulation between 1995 and 2018. Because sage-grouse exhibit population cycles (periodic increases and decreases in abundance across approximately 6- to 10-year wavelengths), we estimated trends across three nested temporal scales that represent one (11 years), two (18 years), and three (24 years) complete population cycles. These estimates of relatively long-term averaged population change account for temporal (that is, interannual) variation. Our model predicted population abundance for the Bi-State DPS during 2018 at 3,305 individuals (2,247–4,683), with the majority occupying Bodie Hills and Long Valley. The model also predicted cyclic dynamics in abundance through time with evidence of 24-year population growth and slight trends of decline over the past 18 years. Specifically, across the Bi-State DPS as a whole, we estimated annual average at 0.99, 0.99, and 1.02 over the one, two, and three population cycles, which equated to a 10.5 percent, 16.6 percent decrease, and 60.0 percent increase in abundance over the 11-, 18-, and 24-year cycles. Estimated abundance in 2018 had not reached numbers lower than those predicted during 1995. However, we found spatial variation in population trends across the three cycles. Bodie Hills subpopulation comprised the greatest (1,521) and exhibited average annual greater than 1.0 across all periods resulting in average annual increases of 7 percent. This relatively large subpopulation has grown 5 times larger than what was predicted in 1995 while experiencing cyclical dynamics within that period. Conversely, other smaller subpopulations within the Bi-State DPS exhibited average annual equal to or less than 1.0 resulting in estimated 10-year risks of extirpation ranging from 2.0 to 76.1 percent. In general, evidence of decline among smaller subpopulations was greatest for the most recent period (2008–18) compared to a period that encompassed three full population cycles (24-year). This difference coincides with an intense period of drought that began in 2012. For comparative purposes as part of this first objective, we conducted a similar analysis for populations of sage-grouse within Nevada and California but outside the Bi-State DPS. We developed a region-wide and distance-weighted IPM using lek count from Nevada Department of Wildlife (NDOW) and California Department of Fish and Wildlife (CDFW) databases and with telemetry data collected by USGS across 12 sage-grouse subpopulations. Our models predicted similar patterns in population cycling outside the Bi-State DPS but with much stronger evidence of long-term declines across 24 years. Specifically, median averaged across each year of the 11-, 18-, and 24-year periods resulted in average annual values of 0.94, 0.97, and 0.99, respectively. These values equate to 41.0 percent, 38.5 percent, and 21.3 percent declines over the corresponding periods. Second, we used lek count data in a state-space modeling framework to compare trends in population abundance across different spatial scales (that is, leks versus Bi-State DPS). This hierarchical framework allowed us to disentangle declines associated with climate conditions as opposed to other local level factors that might signal the need for management intervention. Specifically, we identified 7 leks that were both declining and recently decoupled from larger spatial scale trends, typically governed by climatic conditions (referred to as soft or hard signals). The goal of this analysis was to provide an early warning system that might have implications for conservation actions at local scales. Third, we developed phenological (spring, summer–fall, and winter) and reproductive life stage (nesting, early brood-rearing, and late-brood rearing) based resource selection functions using various environmental covariates. We report rankings of variable importance for each season and life stage, developed maps of habitat selection indices (HSI), binned categories representing low, moderate, and high classes of quality (where any category greater than or equal to low indicated selected habitat) for each phenological season and life stage, and produced composite maps by selected phenological and reproductive stage to estimate annual habitat. Fourth, we used for each lek within the Bi-State DPS to carry out a spatial analysis that quantified substantial changes in the distribution of occupied habitat across long- (24-year) and short- (11-year) term periods. Owing to differences among available datasets, the long-term analysis primarily reflected spatial shifts among subpopulations comprising the majority of the Bi-State DPS (that is, Bodie Hills and Long Valley) while the short-term analysis also quantified changes among subpopulations along the periphery. Over long and short-term periods, the overall distribution of occupied habitat (as measured by 99 percent utilization distributions intersecting any quantified habitat) was reduced by 20,573 ha and 55,492 ha, respectively. Occupied core areas (as measured by 50 percent utilization distributions intersecting any quantified habitat) over long-term periods were solely located in Bodie Hills and Long Valley. Although nearly all subpopulations experienced contractions in occupied overall and core distribution, Bodie Hills experienced spatial expansion that occurred with concomitant spatial contraction at Long Valley over both periods. Subpopulations at the northern (Pine Nuts), central (Sagehen) and southern (White-Mountains) extents of the Bi-State DPS also experienced spatial contraction over the short-term period. These findings, coupled with those of population trends, indicate long-term patterns in redistribution of sage-grouse from Long Valley and peripheral subpopulations to Bodie Hills. That is, sage-grouse subpopulations at the periphery are declining while the largest population at the core is increasing, which could have meaningful impacts on overall metapopulation persistence. We provide evidence for loss of occupied habitat (reduced distribution) given local extirpation of subpopulations. Fifth, we calculated percentages of selected phenological, life stage, and annual habitat that each subpopulation contributed to the Bi-State DPS. We then intersected these maps with a composite estimate of occupied habitat from the fourth objective and calculated percentages of selected habitat likely occupied by sage-grouse that each subpopulation contributed to the Bi-State DPS. These values provide evidence for loss of occupied habitat and subsequent reductions in spatial distribution given reductions in abundance and, in some cases, extirpation of leks within subpopulations. Lastly, we carried out an initial in-depth analysis of selection for irrigated pastures and wet meadows during the brood-rearing stage for the Long Valley subpopulation. We chose this subpopulation because it represents a population core, representing 26.5 percent of total sage-grouse within the Bi-State DPS, and has exhibited long-term declines in abundance and distribution. This subpopulation is highly sensitive to precipitation and other factors that influence water availability. Models predicted higher use of the interior portions of irrigated pastures and wet meadows during late brood-rearing period, which represented a potentially risky use of habitat that was exacerbated during periods of low moisture (for example, drought, reduced water delivery, or both). Sage-grouse typically used edges of riparian areas and pastures, largely because the interior of these mesic areas consisted of considerably less overhead concealment cover (for example, shrubs) that likely resulted in a higher risk of mortality. We found that a lack of water delivery to pastures in the form of overwinter precipitation or diversion ditches increased the movements of sage-grouse to the interior of pastures. Although further investigation of water delivery impacts on chick survival are warrented, our initial findings regarding resource selection may explain recent declines in population growth at Long Valley.

California, Nevada↗

State-discharge relations at dams on the Illinois and Des Plaines rivers in Illinois

Stage-discharge relations were developed for the Brandon Road Dam on the Des Plaines River and the Dresden Island, Marseilles, Starved Rock, Peoria, and La Grange Dams on the Illinois River. A t Brandon Road Dam, streamflow is regulated by the operation of tainter gates and headgates. Tainter gates are operated to regulate streamflow at the Dresden Island, Marseilles, and Starved Rock Dams. Peoria Dam and La Grange Dam comprise timber-Chanoine wickets, which are lowered to a horizontal position on the streambed when not used for streamflow regulation. Both dams have concrete abutments housing butterfly valves that are also used for regulation. Discharge coefficients, in equations that express discharge as a function of tailwater depth, headwater depth, and vertical height of gate opening, were determined for conditions of free-orifice, submerged-orifice, and free-weir flow under a tainter gate. A free-orifice flow coefficient was determined for the headgates at Brandon Road Dam. Stage-discharge relations for flow over sections of lowered wickets and flow between raised wickets had been developed from hydraulic model studies by the U.S. Army Corps of Engineers in 1937 and 1938. These relations were verified by discharge measurements at V.S. Geological Survey stream-gaging stations on the Illinois River near the Peoria and La Grange Dams. Discharge coefficients in equations of free-orifice and submerged-orifice flow through a butterfly valve were computed from additional measurements at the stream-gaging stations. A total of 50 measurements of discharge that ranged from 1,730 to 86,400 cubic feet per second were used to develop stage-discharge relations at the six dams. The computed relations compared favorably with published hydraulic design criteria. The stage-discharge relations derived from tainter gate control are applicable to all conditions except extremely high streamflow conditions when submerged weir flow exists. The stage-discharge relations for wicket control are applicable to flow over no more than 20 lowered wickets. The stage-discharge relations for butterfly valve and head ate control are applicable to all streamflow conditions.

Illinois↗

Middle Tertiary continental rift and evolution of the Red Sea in southwestern Saudi Arabia

Middle Tertiary rift volcanism in a continental-rift valley in the Arabian-Nubian Shield was the first surface expression of active mantle convection beneath an axis that was to become the Red Sea. Investigation of the coastal plain of southwestern Saudi Arabia suggests that the rift valley was filled with basaltic and felsic to rhyolitic volcanic rocks (Ad Darb and Damad formations), cherty tuffaceous siltstones (Baid formation), and subordinate Nubian-type quartz sandstone (Ayyanah sandstone) between about 30 and 20 Ma ago. These rocks are named herein the Jizan group. At the same time, alkali-olivine basalt was erupted on the stable Precambrian craton at locations 100 to 200 km east of the rift valley axis. First-stage spreading of the Red Sea began about 20 Ma ago when diabasic dikes and gabbro and granophyre plutons (Tihamat Asir complex) of oceanic-tholeiitic parentage were intruded into the continental-rift deposits. The new oceanic crust was injected into a region of thinned continental crust. Because of thinning, the continental crust was extended and became fractured into a series of fault blocks. Crustal extension in the attenuated zone was accompanied by mafic and silicic volcanism producing a continental rift-valley tectonic environment. Fault blocks of the rift valley were initially rotated toward the Red Sea during the first-stage spreading episode. Inland from the continental rift, the thick continental crust was distended on long parallel fractures that were intruded by gabbroic to quartz syenitic magma to form continental dikes. This period of continental-margin extension was short lived, lasting perhaps only 1 or 2 Ma. The first-stage sea-floor spreading of the Red Sea continued until about 15 or 14 Ma ago at a half-spreading rate of about 2.2 cm/yr. Throughout early Tertiary time, the Arabian Shield erosion surface remained near sea level. First-stage uplift of the Red Sea Escarpment began during middle Miocene time, as evidenced by the coarse polymictic boulder conglomerate of the Bathan formation. Second-stage scarp uplift and second-stage sea-floor spreading followed during Pliocene, Pleistocene, and Holocene time.

Open-File Report↗

Tertiary volcanic rocks and uranium in the Thomas Range and northern Drum Mountains, Juab County, Utah

The Thomas Range and northern Drum Mountains have a history of volcanism, faulting, and mineralization that began about 42 m.y. (million years) ago. Volcanic activity and mineralization in the area can be divided into three stages according to the time-related occurrence of rock types, trace-element associations, and chemical composition of mineral deposits. Compositions of volcanic rocks changed abruptly from rhyodacite-quartz latite (42-39 m.y. ago) to rhyolite (38-32 m.y. ago) to alkali rhyolite (21 and 6-7 m.y. ago); these stages correspond to periods of chalcophile and siderophile metal mineralization, no mineralization(?), and lithophile metal mineralization, respectively. Angular unconformities record episodes of cauldron collapse and block faulting between the stages of volcanic activity and mineralization. The youngest angular unconformity formed between 21 and 7 m.y. ago during basin-and-range faulting. Early rhyodacite-quartz latite volcanism from composite volcanoes and fissures produced flows, breccias, and ash-flow tuff of the Drum Mountains Rhyodacite and Mt. Laird Tuff. Eruption of the Mt. Laird Tuff about 39 m.y. ago from an area north of Joy townsite was accompanied by collapse of the Thomas caldera. Part of the roof of the magma chamber did not collapse, or the magma was resurgent, as is indicated by porphyry dikes and plugs in the Drum Mountains. Chalcophile and siderophile metal mineralization, resulting in deposits of copper, gold, and manganese, accompanied early volcanism. Te middle stage of volcanic activity was characterized by explosive eruption of rhyolitic ash-flow tuffs and collapse of the Dugway Valley cauldron. Eruption of the Joy Tuff 38 m.y. ago was accompanied by subsidence of this cauldron and was followed by collapse and sliding of Paleozoic rocks from the west wall of the cauldron. Landslides in The Dell were covered by the Dell Tuff, erupted 32 m.y. ago from an unknown source to the east. An ash flow of the Needles Range(?) Formation was erupted 30-31 m.y. ago from an unknown source. Mineralization probably did not occur during the rhyolitic stage of volcanism. The last stage of volcanism was contemporaneous with basin-and-range faulting and was characterized by explosive eruption of ash and pumice, forming stratified tuff, and by quiet eruption of alkali rhyolite as viscous flows and domes. The first episode of alkali rhyolite volcanism deposited the beryllium tuff and porphyritic rhyolite members of the Spor Mountain Formation 21 m.y. ago. After a period of block faulting, the stratified tuff and alkali rhyolite of the Topaz Mountain Rhyolite were erupted 6-7 m.y. ago along faults and fault intersections. Erosion of Spor Mountain, as well as explosive eruptions through dolomite, provided abundant dolomite detritus to the beryllium tuff member. The alkali rhyolite of both formations is fluorine rich, as is evident from abundant topaz, and contains anomalous amounts of lithophile metals. Alkali rhyolite volcanism was accompanied by lithophile metal mineralization which deposited fluorite, beryllium, and uranium. The structure of the area is dominated by the Thomas caldera and the younger Dugway Valley cauldron, which is nested within the Thomas caldera; the Thomas caldera is surrounded by a rim of Paleozoic rocks at Spor Mountain and Paleozoic to Precambrian rocks in the Drum Mountains. The Joy fault and Dell fault system mark the ring-fracture zone of the Thomas caldera. These structural features began to form about 39 m.y. ago during eruption of the Mt. Laird Tuff and caldera subsidence. The Dugway Valley cauldron sank along a series of steplike normal faults southeast of Topaz Mountain in response to collapse of the magma chamber of the Joy Tuff. Caldera structure was modified by block faulting between 21 and 7 m.y. ago, the time of widespread extensional faulting in the Basin and Range Province. Vents erupted alkali rhyolite 6-7 m.y. ago along basin-and-range faults.

Professional Paper↗

Surface-water hydrology of the Gulf Intracoastal Waterway in South-Central Louisiana, 1996-99

The flow of freshwater and suspended sediment from the Lower Atchafalaya River (LAR) and Wax Lake Outlet (WLO) into and along the Gulf Intracoastal Waterway (GIWW) and selected adjacent surface-water bodies between Cypremort and Larose in south-central Louisiana, from October 1996 to December 1999, was characterized using instantaneous and computed continuous discharge measurements and measurements of suspended- sediment concentrations. The GIWW parallels the entire Louisiana coast near the wetland/ upland interface. Following natural hydraulic gradients, the GIWW captures water and sediment from the southward flowing LAR and the WLO where it crosses those waterways, and distributes this freshwater and sediment to points east and west. East of Morgan City, La., an average of 12,200 ft3/s (cubic feet per second) of water flowed from the LAR into the Avoca Island Cutoff Channel. The LAR was the primary source of water to the GIWW east of Morgan City. Drainage from the Verret Subbasin through Bayou Boeuf contributed an average of 1,000 ft3/s to the eastward flow in the GIWW. Eastward flow in the GIWW near Bay Wallace east of Morgan City and to the west of the Houma Navigation Canal (HNC) at Houma, La., averaged about 5,700 ft3/s. Average flow in the GIWW east of the HNC at Houma was 2,610 ft3/s to the east, and 2,200 ft3/s east of Bayou Lafourche at Larose, also to the east. Measured discharge in the GIWW was always to the west between the LAR and WLO. Water entered this stretch of the GIWW from the LAR. The WLO was the primary source of water to the GIWW west of WLO. Discharge in the GIWW averaged 9,460 ft3/s west of WLO south of Calumet and 8,230 ft3/s east of Jaws Bay west of Franklin. Average discharge in the GIWW west of Jaws Bay near Cypremort was 3,310 ft3/s and at Cypremort was 1,350 ft3/s. Average discharge was to the west at all four locations, but discharge as high as 2,830 ft3/s was measured flowing eastward toward Jaws Bay in the GIWW at Cypremort. In bayous and canals in most of coastal Louisiana, including the GIWW, stage narrowly fluctuates around the Gulf of Mexico level. Where the GIWW crosses the LAR and WLO, stage can reach 3 ft (feet) or more above the North American Vertical Datum of 1988 (NAVD88). Flow in the GIWW results from these differences in stage. When the LAR at Morgan City reached 3 to 4 ft above NAVD88, flow in the GIWW became more predictable. Discharge at most sites between the HNC and Jaws Bay increased in varying amounts as stage of the LAR at Morgan City increased beyond 3 ft above NAVD88. At sites in the GIWW east of HNC, discharge did not increase predictably. For all measurements made when the LAR at Morgan City was 3 ft or more above NAVD88, average discharge was about 3,100 ft3/s in the GIWW east of HNC at Houma and 2,880 ft3/s east of Bayou Lafourche at Larose. The LAR at Morgan City is 3 ft or more above NAVD88 for about 7 months in a normal year. When the LAR at Morgan City was less than 3 ft above NAVD88, water in the GIWW flowed along the prevailing water-level gradients, to the east between Bay Wallace and the HNC and to the west between WLO and Jaws Bay. However, local runoff and drainage from areas adjacent to the GIWW became more significant in maintaining flow at low LAR stage. Discharge was consistently higher in the GIWW west of the HNC at Houma than farther west near Bay Wallace east of Morgan City, when the LAR at Morgan City was less than 3 ft above NAVD88. Westward flow in the GIWW between Houma and Morgan City was observed near Bay Wallace east of Morgan City but was never observed west of the HNC at Houma. Discharge in the GIWW east of Jaws Bay west of Franklin, La., frequently was higher than in the GIWW west of WLO south of Calumet, La., at low LAR stage. East of the LAR, suspended-sediment concentrations averaged about 162 mg/L (milligrams per liter) at the two sites closest to the LAR, Avoca Island Cutoff Channel and Bayou Penchant south of Morgan Ci

Professional Paper↗

Flood-inundation maps for the Suncook River in Epsom, Pembroke, Allenstown, and Chichester, New Hampshire

Digital flood-inundation maps for a 16.5-mile reach of the Suncook River in Epsom, Pembroke, Allenstown, and Chichester, N.H., from the confluence with the Merrimack River to U.S. Geological Survey (USGS) Suncook River streamgage 01089500 at Depot Road in North Chichester, N.H., were created by the USGS in cooperation with the New Hampshire Department of Homeland Security and Emergency Management. The inundation maps presented in this report depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the USGS streamgage at Suncook River at North Chichester, N.H. (station 01089500). The current conditions at the USGS streamgage may be obtained on the Internet (http://waterdata.usgs.gov/nh/nwis/uv/?site_no=01089500&PARAmeter_cd=00065,00060). The National Weather Service forecasts flood hydrographs at many places that are often collocated with USGS streamgages. Forecasted peak-stage information is available on the Internet at the National Weather Service (NWS) Advanced Hydrologic Prediction Service (AHPS) flood-warning system site (http://water.weather.gov/ahps/) and may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. These maps along with real-time stream stage data from the USGS Suncook River streamgage (station 01089500) and forecasted stream stage from the NWS will provide emergency management personnel and residents with information that is critical for flood-response activities, such as evacuations, road closures, disaster declarations, and post-flood recovery. The maps, along with current stream-stage data from the USGS Suncook River streamgage and forecasted stream-stage data from the NWS, can be accessed at the USGS Flood Inundation Mapping Science Web site http://water.usgs.gov/osw/flood_inundation/.

New Hampshire↗

Flood-inundation maps for the Driftwood River and Sugar Creek near Edinburgh, Indiana

Digital flood-inundation maps for an 11.2 mile reach of the Driftwood River and a 5.2 mile reach of Sugar Creek, both near Edinburgh, Indiana, were created by the U.S. Geological Survey (USGS) in cooperation with the Camp Atterbury Joint Maneuver Training Center, Edinburgh, Indiana. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/, depict estimates of the areal extent of flooding corresponding to selected water levels (stages) at the USGS streamgage 03363000 Driftwood River near Edinburgh, Ind. Current conditions at the USGS streamgage in Indiana may be obtained on the Internet at http://waterdata.usgs.gov/in/nwis/current/?type=flow. In addition, the information has been provided to the National Weather Service (NWS) for incorporation into their Advanced Hydrologic Prediction Service (AHPS) flood warning system at http://water.weather.gov/ahps/. The NWS forecasts flood hydrographs at many places that are often collocated at USGS streamgages. That forecasted peak-stage information, also available on the Internet, may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. For this study, flood profiles were computed for the stream reaches by means of a one-dimensional step-backwater model. The model was calibrated using the most current stage-discharge relations at the USGS streamgage 03363000 Driftwood River near Edinburgh, Ind. The hydraulic model was then used to determine elevations throughout the study reaches for nine water-surface profiles for flood stages at 1-ft intervals referenced to the streamgage datum and ranging from bankfull to nearly the highest recorded water level at the USGS streamgage 03363000 Driftwood River near Edinburgh, Ind. The simulated water-surface profiles were then combined with a geospatial digital elevation model (derived from Light Detection and Ranging (LiDAR) data) in order to delineate the area flooded at each water level. The availability of these maps along with real-time information available online regarding current stage from USGS streamgages and forecasted stream stages from the NWS provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures as well as for post flood recovery efforts.

Indiana↗

Flood-inundation maps for the White River at Newberry, Indiana

Digital flood-inundation maps for a 4.9-mile reach of the White River at Newberry, Indiana (Ind.), were created by the U.S. Geological Survey (USGS) in cooperation with the Indiana Office of Community and Rural Affairs. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation , depict estimates of the areal extent of flooding corresponding to selected water levels (stages) at USGS streamgage 03360500, White River at Newberry, Ind. Current conditions at the USGS streamgage may be obtained on the Internet ( http://waterdata.usgs.gov/in/nwis/uv?site_no=03360500 ). The National Weather Service (NWS) forecasts flood hydrographs at the Newberry streamgage. That forecasted peak-stage information, also available on the Internet, may be used in conjunction with the maps developed in this study to show predicted areas of flood inundation. For this study, flood profiles were computed for the White River reach by means of a one-dimensional step-backwater model developed by the U.S. Army Corps of Engineers. The hydraulic model was calibrated by using the most current stage-discharge relation at USGS streamgage 03360500, White River at Newberry, Ind., and high-water marks from a flood in June 2008.The calibrated hydraulic model was then used to determine 22 water-surface profiles for flood stages a1-foot intervals referenced to the streamgage datum and ranging from bankfull to approximately the highest recorded water level at the streamgage. The simulated water-surface profiles were then combined with a geographic information system digital elevation model (derived from Light Detection and Ranging (LiDAR) data) in order to delineate the area flooded at each water level. The availability of these maps, along with Internet information regarding current stage from the USGS streamgage at Newberry, Ind., and forecasted stream stages from the NWS, provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures as well as for post-flood recovery efforts.

Indiana↗