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Data from theodolite measurements of creep rates on San Francisco Bay region faults, California

Introduction Our purpose is to annually update our creep-data archive on San Francisco Bay region active faults for use by the scientific research community. Earlier data (1979-2001) were reported in Galehouse (2002) and were analyzed and described in detail in a summary report (Galehouse and Lienkaemper, 2003). A complete analysis of our earlier results obtained on the Hayward Fault was presented in Lienkaemper, Galehouse and Simpson (2001) and updated in Lienkaemper and others (2012). Lienkaemper and others (2014) provide a new overview and analysis of fault creep along all sections of the northern San Andreas Fault system, from which they estimate by how much fault creep reduces the seismic hazard for each fault section. From 1979 until his retirement from the project in 2001, Jon Galehouse of San Francisco State University (SFSU) and many student research assistants measured creep (aseismic slip) rates on these faults. The creep measurement project, which was initiated by Galehouse, continued through the Geosciences Department at SFSU from 2001-2006 under the direction of Karen Grove and John Caskey (Grove and Caskey, 2005) and since 2006 under Caskey (2007). Forrest McFarland has managed most of the technical and logistical project operations, as well as data processing and compilation since 2001. Data from 2001-2007 are found in McFarland and others (2007). From 2009 onward, we have released the raw data annually using this report (OF2009-1119) as a permanent publication link, while publishing more detailed analyses of these data in the scientific literature, such as Lienkaemper and others (2014). We maintain a project Web site (http://funnel.sfsu.edu/creep/) that includes the following information: project description, project personnel, creep characteristics and measurement, map of creep-measurement sites, creep-measurement site information, and links to data plots for each measurement site. Our most current, annually updated results are, therefore, accessible to the scientific community and to the general public. Information about the project can currently be requested by the public by an email link ( fltcreep@sfsu.edu) found on our project Web site.

California↗

Integrating authentic scientific research in a conservation course–based undergraduate research experience

Course-based undergraduate research experiences (CUREs) have been developed to overcome barriers including students in research. However, there are few examples of CUREs that take place in a conservation and natural resource context with students engaging in field research. Here, we highlight the development of a conservation-focused CURE integrated to a research program, research benefits, student self-assessment of learning, and perception of the CURE. With the additional data, researchers were able to refine species distribution models and facilitate management decisions. Most students reported gains in their scientific skills, felt they had engaged in meaningful, real-world research. In student reflections on how this experience helped clarify their professional intentions, many reported being more likely to enroll in graduate programs and seek employment related to science. Also interesting was all students reported being more likely to talk with friends, family, or the public about wildlife conservation issues after participating, indicating that courses like this can have effects beyond the classroom, empowering students to be advocates and translators of science. Field-based, conservation-focused CUREs can create meaningful conservation and natural resource experiences with authentic scientific teaching practices.

Natural Sciences Education↗

Part III—Fundamental research in geophysics relating to prospecting

In addition to projects such as those reported in parts I and II above, the Section of Geophysics of the Federal Government has undertaken a considerable amount of fundamental research. Two such field‐projects may be mentioned, one a magnetometric study in the Comstock District of Nevada, and the other a resistivity‐study of snow and ice. In addition to the field‐problems, there have been two classes of research of a mathematical type. One of these has been the preparation of tables, scales, and charts for the important geophysical functions already known; the other has been the extension of the relations involved in the resistivity‐problem.

Eos, Transactions, American Geophysical Union↗

The principal rare earth elements deposits of the United States: A summary of domestic deposits and a global perspective

The rare earth elements (REE) are fifteen elements with atomic numbers 57 through 71, from lanthanum to lutetium ('lanthanides'), plus yttrium (39), which is chemically similar to the lanthanide elements and thus typically included with the rare earth elements. Although industrial demand for these elements is relatively small in tonnage terms, they are essential for a diverse and expanding array of high-technology applications. REE-containing magnets, metal alloys for batteries and light-weight structures, and phosphors are essential for many current and emerging alternative energy technologies, such as electric vehicles, energy-efficient lighting, and wind power. REE are also critical for a number of key defense systems and other advanced materials. Section 843 of the National Defense Authorization Act for Fiscal Year 2010, Public Law 111-84, directs the Comptroller General to complete a report on REE materials in the defense supply chain. The Office of Industrial Policy, in collaboration with other U.S. Government agencies, has initiated (in addition to this report) a detailed study of REE. This latter study will assess the Department of Defense's use of REE, as well as the status and security of domestic and global supply chains. That study will also address vulnerabilities in the supply chain and recommend ways to mitigate any potential risks of supply disruption. To help conduct this study, the Office of Industrial Policy asked the U.S. Geological Survey (USGS) to report on domestic REE reserves and resources in a global context. To this end, the enclosed report is the initial USGS contribution to assessing and summarizing the domestic REE resources in a global perspective. In 2009, the Mineral Resources Program of the USGS organized a new project under the title Minerals at Risk and For Emerging Technologies in order to evaluate mineral resource and supply issues of rare metals that are of increasing importance to the national economy. Leaders and members of this project, with the assistance of the USGS National Minerals Information Center, prepared the enclosed USGS report on domestic REE resources. The USGS Mineral Resources Program has investigated domestic and selected foreign REE resources for many decades, and this report summarizes what has been learned from this research. The USGS National Minerals Information Center (formerly Minerals Information Team) has monitored global production, trade, and resources for an equally long period and is the principal source of statistics used in this report. The objective of this study is to provide a nontechnical overview of domestic reserves and resources of REE and possibilities for utilizing those resources. At the present time, the United States obtains its REE raw materials from foreign sources, almost exclusively from China. Import dependence upon a single country raises serious issues of supply security. In a global context, domestic REE resources are modest and of uncertain value; hence, available resources in traditional trading partners (such as Canada and Australia) are of great interest for diversifying sources of supply. This report restates basic geologic facts about REE relevant to assessing security of supply, followed by a review of current United States consumption and imports of REE, current knowledge of domestic resources, and possibilities for future domestic production. Further detail follows in a deposit-by-deposit review of the most significant domestic REE deposits (see index map). Necessary steps to develop domestic resources are discussed in a separate section, leading into a review of current domestic exploration and a discussion of the value of a future national mineral resource assessment of REE. The report also includes an overview of known global REE resources and discusses the reliability of alternative foreign sources of REE.

Scientific Investigations Report↗

Processes influencing the transport and fate of contaminated sediments in the coastal ocean– Boston Harbor and Massachusetts Bay

Most of the major urban centers of the United States including Boston, New York, Washington, Chicago, New Orleans, Miami, Los Angeles, San Francisco, and Seattle—are on a coast (fig. 1.1). All of these cities discharge treated sewage effluent into adjacent waters. In 2000, 74 percent of the U.S. population lived within 200 kilometers (km) of the coast. Between 1980 and 2002, the population density in coastal communities increased approximately 4.5 times faster than in noncoastal areas of the U.S. (Perkins, 2004). More people generate larger volumes of wastes, increase the demands on wastewater treatment, expand the area of impervious land surfaces, and use more vehicles that contribute contaminants to street runoff. According to the National Coastal Condition Report II (U.S. Environmental Protection Agency, 2005a), on the basis of coastal habitat, water and sediment quality, benthic index, and fish tissue, the overall national coastal condition is only poor to fair and the overall coastal condition in the highly populated Northeast is poor. Scientific information helps managers to prioritize and regulate coastal-ocean uses that include recreation, commercial fishing, transportation, waste disposal, and critical habitat for marine organisms. These uses are often in conflict with each other and with environmental concerns. Developing a strategy for managing competing uses while maintaining sustainability of coastal resources requires scientific understanding of how the coastal ocean system behaves and how it responds to anthropogenic influences. This report provides a summary of a multidisciplinary research program designed to improve our understanding of the transport and fate of contaminants in Massachusetts coastal waters. Massachusetts Bay and Boston Harbor have been a focus of U.S. Geological Survey (USGS) research because they provide a diverse geographic setting for developing a scientific understanding of the geology, geochemistry, and oceanography of coastal systems in general. Scientific data from this region can also be used to inform decisions about important economic, environmental, and political issues. From the economic viewpoint, the annual value of tourism and shipping in Massachusetts and Cape Cod Bays is about $1.5 billion and $1.9 billion, respectively. Commercial and recreational fishing generates about $240 million per year in the same region (U.S. Environmental Protection Agency, 2005b). The environmental issue is the 300-year history of waste discharge from the Boston metropolitan area into the harbor. This history is punctuated by cycles of environmental degradation, public outcry, and improvements in the sewage treatment system. With each improvement, however, the continuous growth of population in greater Boston (fig. 1.2) and the resulting increase in the volume of waste exceeded the capacity of the treatment system, thereby setting the stage for a new contamination crisis. By the 1980s, the levels of contaminants in sediments of Boston Harbor were among the highest in the nation (National Oceanic and Atmospheric Administration, 1987). Fish were diseased, shellfish beds were closed, and swimming beaches were unsafe after heavy rains; in general, water quality and aesthetics were below acceptable standards. Legal and political issues have always been part of Boston Harbor’s history. The environmental conditions in the 1980s were highlighted in a 1983 legal suit brought by the city of Quincy against the Metropolitan District Commission (MDC, the state agency responsible for sewage treatment) and heads of three state agencies for discharging untreated or poorly treated sewage into the harbor (Dolin, 2004). The suit never went to trial, but through the actions of a Massachusetts Superior Court, the issue of Boston Harbor contamination remained on the political and public agenda. The judge called the harbor “unsafe, unsanitary, indecent, in violation of the law (Clean Water Act), and a danger to the health and welfare of the people” (Forman, 1984). To force the state legislature to implement a plan to improve harbor conditions, the judge threatened to place the MDC in receivership and curtail new sewage hookups for industry. Under intense lobbying by business, the legislature created the Massachusetts Water Resources Authority (MWRA) in December 1984. The independent MWRA was established to manage Boston’s waste treatment system and was given the authority to float bonds to pay for major improvements in the treatment system. In 1985, a Federal court began hearings on a suit brought by the Conservation Law Foundation, the Environmental Protection Agency (USEPA), and towns of Quincy and Winthrop against the MDC and MWRA (as heir to responsibilities of the MDC) for years of violation of the Clean Water Act. The judge ruled against the defendants and required all the parties to submit a construction plan and schedule for a new sewage treatment system. From these submissions, he developed a schedule for treatment system upgrades that would give the “citizens of this commonwealth a public assurance that Boston Harbor will be cleaned up within a defined period of time” (Dolin, 2004). The MWRA’s Boston Harbor cleanup program (Levy and Connor, 1992) has transformed the Boston sewage system. Key improvements were to (1) reduce contaminants at the industrial source; (2) remediate leaks in the sewage-collection system; (3) eliminate sewage sludge discharge to the harbor; (4) upgrade sewage treatment from primary to secondary; (5) construct a new ocean outfall 15.2 km offshore in Massachusetts Bay for discharge of treated effluent (fig. 1.3); and (6) implement improvements in the combined-sewer-overflow system. As part of the harbor cleanup program, the MWRA developed a comprehensive monitoring program (summarized in MWRA, 2004) to assess changes in the harbor and bays that specifically related to the new sewage system. Additional information about conditions and processes in the coastal system on a regional scale and over a long time period was and continues to be important in predicting and interpreting local change. Implementation of the MWRA’s program and the mission of the USGS to understand the geology of the nation’s offshore waters provided an opportunity to conduct a cooperative multidisciplinary research program. This USGS program addresses basic scientific questions as well as concerns raised by management regarding the design, implementation, and assessment of the new sewage treatment system. Already active in Boston Harbor during the late 1970s, the USGS expanded research into Massachusetts Bay with a multidisciplinary program in 1989.

Massachusetts↗

Single-beam bathymetry data collected in 2015 from Grand Bay, Alabama-Mississippi

As part of the Sea-level and Storm Impacts on Estuarine Environments and Shorelines (SSIEES) project, scientists from the U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center conducted a single-beam bathymetry survey within the estuarine, open-bay, and tidal creek environments of Grand Bay, Alabama-Mississippi, from May to June 2015. The goal of the SSIEES project is to assess the physical controls of sediment and material exchange between wetlands and estuarine environments along the northern Gulf of Mexico, specifically Grand Bay, Alabama-Mississippi; Vermilion Bay, Louisiana; and, along the east coast, within Chincoteague Bay, Virginia-Maryland. The data described in this report provide baseline bathymetric information for future research investigating wetland-marsh evolution, sediment transport, erosion, recent and long-term geomorphic change, and can also support the modeling of changes in response to restoration and storm impacts. The survey area encompasses more than 40 square kilometers of Grand Bay’s waters.

Alabama, Mississippi↗

Threats posed by the Fungal Kingdom to humans, wildlife, and agriculture

The Fungal Kingdom includes at least six million eukaryotic species and is remarkable with respect to its profound impact on global health, biodiversity, ecology, agriculture, manufacturing, and biomedical research. Approximately 625 fungal species have been reported to infect vertebrates, 200 of which can be human-associated, either as commensals and members of our microbiome or as pathogens that cause infectious diseases. These organisms pose a growing threat to human health with the global increase in the incidence of invasive fungal infections, prevalence of fungal allergy, and the evolution of fungal pathogens resistant to some or all current classes of antifungals. More broadly, there has been an unprecedented and worldwide emergence of fungal pathogens impacting animal and plant biodiversity. Approximately 8,000 species of fungi and Oomycetes are associated with plant disease. Indeed, across agriculture, such fungal diseases of plants include new devastating epidemics of trees and jeopardize food security worldwide by causing epidemics in staple and commodity crops that feed billions. Further, ingestion of mycotoxins contributes to ill health and causes cancer. Coordinated international research efforts, enhanced technology translation, and greater policy outreach by scientists are needed to more fully understand the biology and drivers that underlie the emergence of fungal diseases and to mitigate against their impacts. Here, we focus on poignant examples of emerging fungal threats in each of three areas: human health, wildlife biodiversity, and food security.

mBio↗

Cooperative Fish and Wildlife Research Units Program—2017 year in review postcard

This postcard provides details about the Cooperative Fish and Wildlife Research Units Program—2017 Year in Review, U.S. Geological Survey Circular 1438, now available at https://doi.org/10.3133/cir1438 . In this report, you will find details about the Cooperative Fish and Wildlife Research Units (CRU) Program relating to its background, fish and wildlife science, students, staffing, vacancies, research funding, outreach and training, science themes, accolades, and professional services. You will see snapshots of CRU projects with information on how results have been or are being applied by cooperators. This is the essence of what we do: science that matters. Throughout the year, keep up with CRU research projects at http://www.coopunits.org .

General Information Product↗

Cooperative Fish and Wildlife Research Units program—2018 year in review postcard

This postcard provides details about the "Cooperative Fish and Wildlife Research Units Program—2018 Year in Review," U.S. Geological Survey Circular 1452, now available at https://doi.org/10.3133/cir1452 . In this report, you will find details about the Cooperative Fish and Wildlife Research Units (CRU) program relating to its background, fish and wildlife science, students, staffing, vacancies, research funding, outreach and training, science themes, accolades, and professional services. You will see snapshots of CRU projects with information on how results have been or are being applied by cooperators. This is the essence of what we do: science that matters. Throughout the year, keep up with CRU research projects at http://www.coopunits.org .

General Information Product↗

Northern Prairie Wildlife Research Center—Celebrating 50 years of science

The Northern Prairie Wildlife Research Center (NPWRC) celebrated its 50-year anniversary in 2015. This report is written in support of that observance. We document why and how the NPWRC came to be and describe some of its many accomplishments and the influence the Center’s research program has had on natural resource management. The history is organized by major research themes, proceeds somewhat chronologically within each theme, and covers the Center’s first 50 years of research. During that period, Center scientists authored more than 1,700 publications and reports. More than 1,000 seasonal or temporary field personnel, and more than 100 graduate students, contributed to the Center’s success; many went on to have exemplary careers in natural resource management, conservation, and education. The mission of the Northern Prairie Wildlife Research Center today remains true to the original vision: to provide the knowledge needed to understand, conserve, and manage the Nation’s natural resources for current and future generations, with an emphasis on species and ecosystems of the northern Great Plains. The Center’s first 50 years of applied biological research provides a deep scientific foundation on which to address emerging issues for the natural resources in the northern Great Plains and beyond.

Circular↗

Sedimentary exhalative (sedex) zinc-lead-silver deposit model

This report draws on previous syntheses and basic research studies of sedimentary exhalative (sedex) deposits to arrive at the defining criteria, both descriptive and genetic, for sedex-type deposits. Studies of the tectonic, sedimentary, and fluid evolution of modern and ancient sedimentary basins have also been used to select defining criteria. The focus here is on the geologic characteristics of sedex deposit-hosting basins that contain greater than 10 million metric tons of zinc and lead. The enormous size of sedex deposits strongly suggests that basin-scale geologic processes are involved in their formation. It follows that mass balance constraints of basinal processes can provide a conceptual underpinning for the evaluation of potential ore-forming mechanisms and the identification of geologic indicators for ore potential in specific sedimentary basins. Empirical data and a genetic understanding of the physicochemical, geologic, and mass balance conditions required for each of these elements are used to establish a hierarchy of quantifiable geologic criteria that can be used in U.S. Geological Survey national assessments. In addition, this report also provides a comprehensive evaluation of environmental considerations associated with the mining of sedex deposits.

Scientific Investigations Report↗

Hydrostratigraphic interpretation of test-hole and borehole geophysical data, Kimball, Cheyenne, and Deuel Counties, Nebraska, 2011-12

Recently (2004) adopted legislation in Nebraska requires a sustainable balance between long-term supplies and uses of surface-water and groundwater and requires Natural Resources Districts to understand the effect of groundwater use on surface-water systems when developing a groundwater-management plan. The South Platte Natural Resources District (SPNRD) is located in the southern Nebraska Panhandle and overlies the nationally important High Plains aquifer. Declines in water levels have been documented, and more stringent regulations have been enacted to ensure the supply of ground-water will be sufficient to meet the needs of future generations. Because an improved understanding of the hydrogeologic characteristics of this aquifer system is needed to ensure sustainability of groundwater withdrawals, the U.S. Geological Survey, in cooperation with the SPNRD, Conservation and Survey Division of the University of Nebraska-Lincoln, and the Nebraska Environmental Trust, began a hydrogeologic study of the SPNRD to describe the lithology and thickness of the High Plains aquifer. This report documents these characteristics at 29 new test holes, 28 of which were drilled to the base of the High Plains aquifer. Herein the High Plains aquifer is considered to include all hydrologically connected units of Tertiary and Quaternary age. The depth to the base of aquifer was interpreted to range from 37 to 610 feet in 28 of the 29 test holes. At some locations, particularly northern Kimball County, the base-of-aquifer surface was difficult to interpret from drill cutting samples and borehole geophysical logs. The depth to the base of aquifer determined for test holes drilled for this report was compared with the base-of-aquifer surface interpreted by previous researchers. In general, there were greater differences between the base-of-aquifer elevation reported herein and those in previous studies for areas north of Lodgepole Creek compared to areas south of Lodgepole Creek. The largest difference was at test hole 5-SP-11, where an Ogallala-filled paleovalley prevously had been interpreted based on relatively sparse test-hole data west of 5-SP-11. The base of aquifer near test hole 5-SP-11 reported herein is approximately 230 ft higher in elevation than previously interpreted. Among other test holes that are likely to have been drilled in Ogallala-filled paleovalleys, the greatest difference in the interpreted base of aquifer was for test hole 7-CC-11, northeast of Potter, Nebraska, where the base of aquifer is 180 feet deeper than previously interpreted. Interpretation of test-hole and borehole geophysical data for 29 additional test holes will improve resource managers’ understanding of the hydrogeologic characteristics, including aquifer thickness. Aquifer thickness, which is related to total water in storage, is not well quantified in the north and south tablelands. The additional hydrostratigraphic interpretations provided in this report will improve the hydrogeologic framework used in current (2014) and future groundwater models, which are the basis for many water-management decisions.

Nebraska↗

U.S. Department of the Interior Climate Science Centers and U.S. Geological Survey National Climate Change and Wildlife Science Center—Annual report for 2017

Introduction The year 2017 was a year of review and renewal for the Department of the Interior (DOI) Climate Science Centers (CSCs) and the U.S. Geological Survey (USGS) National Climate Change and Wildlife Science Center (NCCWSC). The Southeast, Northwest, Alaska, Southwest, and North Central CSCs’ 5-year summary review reports were released in 2017 and contain the findings of the external review teams led by the Cornell University Human Dimensions Research Unit in conjunction with the American Fisheries Society. The reports for the Pacific Islands, South Central, and Northeast CSCs are planned for release in 2018. The reviews provide an opportunity to evaluate aspects of the cooperative agreement, such as the effectiveness of the CSC in meeting project goals and assessment of the level of scientific contribution and achievement. These reviews serve as a way for the CSCs and NCCWSC to look for ways to recognize and enhance our network’s strengths and identify areas for improvement. The reviews were followed by the CSC recompetition, which led to new hosting agreements at the Northwest, Alaska, and Southeast CSCs. Learn more about the excellent science and activities conducted by the network centers in the 2017 annual report.

Open-File Report↗