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At least 739 records · Page 41Linked to original sources
USGS2008

Molecular and morphological analysis of the critically endangered Fijian iguanas reveals cryptic diversity and a complex biogeographic history

The Pacific iguanas of the Fijian and Tongan archipelagos are a biogeographic enigma in that their closest relatives are found only in the New World. They currently comprise two genera and four species of extinct and extant taxa. The two extant species, Brachylophus fasciatus from Fiji, Tonga, and Vanuatu and Brachylophus vitiensis from western Fiji, are of considerable conservation concern with B. vitiensis listed as critically endangered. A recent molecular study has shown that Brachylophus comprised three evolutionarily significant units. To test these conclusions and to reevaluate the phylogenetic and biogeographic relationships within Brachylophus, we generated an mtDNA dataset consisting of 1462 base pairs for 61 individuals from 13 islands, representing both Brachylophus species. Unweighted parsimony analyses and Bayesian analyses produced a well-resolved phylogenetic hypothesis supported by high bootstrap values and posterior probabilities within Brachylophus. Our data reject the monophyly of specimens previously believed to comprise B. fasciatus. Instead, our data demonstrate that living Brachylophus comprise three robust and well-supported clades that do not correspond to current taxonomy. One of these clades comprises B. fasciatus from the Lau group of Fiji and Tonga (type locality for B. fasciatus), while a second comprises putative B. fasciatus from the central regions of Fiji, which we refer to here as B. n. sp. Animals in this clade form the sister group to B. vitiensis rather than other B. fasciatus. We herein describe this clade as a new species of Brachylophus based on molecular and morphological data. With only one exception, every island is home to one or more unique haplotypes. We discuss alternative biogeographic hypotheses to explain their distribution in the Pacific and the difficulties of distinguishing these. Together, our molecular and taxonomic results have important implications for future conservation initiatives for the Pacific iguanas. ?? 2008 The Royal Society.

Philosophical Transactions of the Royal Society B:↗
USGS2024

Rare habitats, rare species, and invasive predators highlight management complexities in the Colorado River system

Long-term drought caused Lake Powell, a reservoir on the Colorado River (USA), to decline to its lowest elevation in >50 years during 2022–2023, allowing warm water to pass through intakes of Glen Canyon Dam and facilitating invasion by non-native Smallmouth Bass ( Micropterus dolomieu ). Establishment of bass downstream of the dam could threaten persistence of several native fishes, including two federally listed species. Subsequent detection of larval Smallmouth Bass in a spring-fed slough (river mile -12 slough) connected to the river in Glen Canyon National Recreation Area (NRA) increased urgency to stem further invasion. The National Park Service is evaluating proposed actions to limit effects from non-native predators on native species in the Colorado River, including potentially channelizing the slough. This locally rare, spring-fed waterbody provides habitat for other species, including Western Tiger Salamanders ( Ambystoma mavortium subsp.) of uncertain origin. We found salamanders from the slough had two distinct mitochondrial DNA haplotypes identical to sequences from nearby Arizona Tiger Salamander ( A. m. nebulosum ) populations, confirming they are the native genotype. We detected Red-spotted Toads ( Anaxyrus punctatus ) and Woodhouse’s Toads ( A. woodhousii ) from three other sites in Glen Canyon NRA and 34 sites in adjacent, downstream Grand Canyon National Park (spanning ∼464 km of river) with environmental DNA and traditional surveys. However, we did not detect salamanders elsewhere, matching prior information that salamanders are rare in the Colorado River corridor below Glen Canyon Dam. Based on this information, we discuss management options for the local population of Arizona Tiger Salamanders.

BioRxiv↗
USGS2014

Clinal variation or validation of a subspecies? A case study of the Graptemys nigrinoda complex (Testudines: Emydidae)

Widely distributed species often display intraspecific morphological variation due to the abiotic and biotic gradients experienced across their ranges. Historically, in many vertebrate taxa, such as birds and reptiles, these morphological differences within a species were used to delimit subspecies. Graptemys nigrinoda is an aquatic turtle species endemic to the Mobile Bay Basin. Colour pattern and morphological variability were used to describe a subspecies ( G. n. delticola ) from the lower reaches of the system, although it and the nominate subspecies also reportedly intergrade over a large portion of the range. Other researchers have suggested that these morphological differences merely reflect clinal variation. Our molecular data (mtDNA) did not support the existence of the subspecies, as the haplotypes were differentiated by only a few base pairs and one haplotype was shared between the putative subspecies. While there were significant morphological and pattern differences among putative specimens of G. n. nigrinoda, G. n. delticola and G. n. nigrinoda × delticola , these differences probably represent clinal variation as they were also related to environmental variables [i.e. cumulative drainage area and drainage (categorical)]. Specimens occupying slow-current, high-turbidity river reaches (e.g. the Tensaw River) exhibited greater relative carapace heights and more dark pigmentation, while specimens occupying fast-current, clearer rivers (e.g. the upper Alabama, Cahaba and Tallapoosa rivers) exhibited lower carapace heights and more yellow pigmentation. Given the absence of clear molecular and morphological differences that are related to drainage characteristics, we suggest that there is not sufficient evidence for the recognition of G. n. delticola as a distinct subspecies.

Alabama;Mississippi↗
USGS2010

Systematics of the Platyrrhinus helleri species complex (Chiroptera: Phyllostomidae), with descriptions of two new species

Platyrrhinus is a diverse genus of small to large phyllostomid bats characterized by a comparatively narrow uropatagium thickly fringed with hair, a white dorsal stripe, comparatively large inner upper incisors that are convergent at the tips, and three upper and three lower molars. Eighteen species are currently recognized, the majority occurring in the Andes. Molecular, morphological, and morphometric analyses of specimens formerly identified as Platyrrhinus helleri support recognition of Platyrrhinus incarum as a separate species and reveal the presence of two species from western and northern South America that we describe herein as new ( Platyrrhinus angustirostris sp. nov. from eastern Colombia and Ecuador, north-eastern Peru, and Venezuela and Platyrrhinus fusciventris sp. nov. from Guyana, Suriname, French Guiana, Trinidad and Tobago, northern Brazil, eastern Ecuador, and southern Venezuela). These two new species are sister taxa and, in turn, sister to Platyrrhinus incarum .

Zoological Journal of the Linnean Society↗
USGS2004

Natural selection of the major histocompatibility complex (Mhc) in Hawaiian honeycreepers (Drepanidinae)

The native Hawaiian honeycreepers represent a classic example of adaptive radiation and speciation, but currently face one the highest extinction rates in the world. Although multiple factors have likely influenced the fate of Hawaiian birds, the relatively recent introduction of avian malaria is thought to be a major factor limiting honeycreeper distribution and abundance. We have initiated genetic analyses of class II ?? chain Mhc genes in four species of honeycreepers using methods that eliminate the possibility of sequencing mosaic variants formed by cloning heteroduplexed polymerase chain reaction products. Phylogenetic analyses group the honeycreeper Mhc sequences into two distinct clusters. Variation within one cluster is high, with dN > d S and levels of diversity similar to other studies of Mhc (B system) genes in birds. The second cluster is nearly invariant and includes sequences from honeycreepers (Fringillidae), a sparrow (Emberizidae) and a blackbird (Emberizidae). This highly conserved cluster appears reminiscent of the independently segregating Rfp-Y system of genes defined in chickens. The notion that balancing selection operates at the Mhc in the honeycreepers is supported by transpecies polymorphism and strikingly high dN/dS ratios at codons putatively involved in peptide interaction. Mitochondrial DNA control region sequences were invariant in the i'iwi, but were highly variable in the 'amakihi. By contrast, levels of variability of class II ?? chain Mhc sequence codons that are hypothesized to be directly involved in peptide interactions appear comparable between i'iwi and 'amakihi. In the i'iwi, natural selection may have maintained variation within the Mhc, even in the face of what appears to a genetic bottleneck.

Molecular Ecology↗
USGS2008

Complex seasonal patterns of primary producers at the land-sea interface

Seasonal fluctuations of plant biomass and photosynthesis are key features of the Earth system because they drive variability of atmospheric CO 2 , water and nutrient cycling, and food supply to consumers. There is no inventory of phytoplankton seasonal cycles in nearshore coastal ecosystems where forcings from ocean, land and atmosphere intersect. We compiled time series of phytoplankton biomass (chlorophyll a ) from 114 estuaries, lagoons, inland seas, bays and shallow coastal waters around the world, and searched for seasonal patterns as common timing and amplitude of monthly variability. The data revealed a broad continuum of seasonal patterns, with large variability across and within ecosystems. This contrasts with annual cycles of terrestrial and oceanic primary producers for which seasonal fluctuations are recurrent and synchronous over large geographic regions. This finding bears on two fundamental ecological questions: (1) how do estuarine and coastal consumers adapt to an irregular and unpredictable food supply, and (2) how can we extract signals of climate change from phytoplankton observations in coastal ecosystems where local‐scale processes can mask responses to changing climate?

Ecology Letters↗
USGS2007

Use of the Delphi method in resolving complex water resources issues

The tri-state river basins, shared by Georgia, Alabama, and Florida, are being modeled by the U.S. Fish and Wildlife Service and the U.S. Army Corps of Engineers to help facilitate agreement in an acrimonious water dispute among these different state governments. Modeling of such basin reservoir operations requires parallel understanding of several river system components: hydropower production, flood control, municipal and industrial water use, navigation, and reservoir fisheries requirements. The Delphi method, using repetitive surveying of experts, was applied to determine fisheries' water and lake-level requirements on 25 reservoirs in these interstate basins. The Delphi technique allowed the needs and requirements of fish populations to be brought into the modeling effort on equal footing with other water supply and demand components. When the subject matter is concisely defined and limited, this technique can rapidly assess expert opinion on any natural resource issue, and even move expert opinion toward greater agreement.

Journal of the American Water Resources Associatio↗
USGS2014

Survival of Atlantic salmon Salmo salar smolts through a hydropower complex

This study evaluated Atlantic salmon Salmo salar smolt survival through the lower Penobscot River, Maine, U.S.A., and characterized relative differences in proportional use and survival through the main-stem of the river and an alternative migration route, the Stillwater Branch. The work was conducted prior to removal of two main-stem dams and operational changes in hydropower facilities in the Stillwater Branch. Survival and proportional use of migration routes in the lower Penobscot were estimated from multistate (MS) models based on 6 years of acoustic telemetry data from 1669 smolts and 2 years of radio-telemetry data from 190 fish. A small proportion (0·12, 95% c.i. = 0·06–0·25) of smolts used the Stillwater Branch, and mean survival through the two operational dams in this part of the river was relatively high (1·00 and 0·97). Survival at Milford Dam, the dam that will remain in the main-stem of the Penobscot River, was relatively low (0·91), whereas survival through two dams that were removed was relatively high (0·99 and 0·98). Smolt survival could decrease in the Stillwater Branch with the addition of two new powerhouses while continuing to meet fish passage standards. The effects of removing two dams in the main-stem are expected to be negligible for smolt survival based on high survival observed from 2005 to 2012 at those locations. Survival through Milford Dam was been well below current regulatory standards, and thus improvement of passage at this location offers the best opportunity for improving overall smolt survival in the lower river.

Maine↗
USGS2017

Screening of duplicated loci reveals hidden divergence patterns in a complex salmonid genome

A whole-genome duplication (WGD) doubles the entire genomic content of a species and is thought to have catalysed adaptive radiation in some polyploid-origin lineages. However, little is known about general consequences of a WGD because gene duplicates (i.e., paralogs) are commonly filtered in genomic studies; such filtering may remove substantial portions of the genome in data sets from polyploid-origin species. We demonstrate a new method that enables genome-wide scans for signatures of selection at both nonduplicated and duplicated loci by taking locus-specific copy number into account. We apply this method to RAD sequence data from different ecotypes of a polyploid-origin salmonid ( Oncorhynchus nerka ) and reveal signatures of divergent selection that would have been missed if duplicated loci were filtered. We also find conserved signatures of elevated divergence at pairs of homeologous chromosomes with residual tetrasomic inheritance, suggesting that joint evolution of some nondiverged gene duplicates may affect the adaptive potential of these genes. These findings illustrate that including duplicated loci in genomic analyses enables novel insights into the evolutionary consequences of WGDs and local segmental gene duplications.

Molecular Ecology↗
USGS2016

Disentangling the complexities of how legumes and their symbionts regulate plant nitrogen access and storage

Nitrogen (N) availability strongly influences the structure and function of ecosystems (e.g. Vitousek & Howarth, 1991), but only a relatively small number of microbial groups have the ability to convert the N 2 in our atmosphere into biologically available forms.This process, N 2 fixation, is the dominant source of new N to the biosphere outside of anthropogenic inputs (Vitousek et al., 2013).Some N 2 -fixing microorganisms live independently on plant leaves, on decomposing organic material, and in soil (Reed et al.,2011), while others have co-evolved with a few higher plant taxa to form symbioses that fix N 2 in root nodules (e.g. Sprent & Raven,1985). The relationship between these legumes and their root nodule symbionts (rhizobia) is one of the most well studied plant –microbe symbioses. Yet, many important questions about the controls, interactions, and implications of legume N 2 fixation remain unanswered. In this issue of New Phytologist (pp. 690–699),Wolf, Funk, & Menge elegantly address a fundamental set of questions about N 2 fixation in their examination of how herbaceous legumes, their symbionts, and external N availability interact to govern legume access and storage of N.

New Phytologist↗
USGS1968

Silurian-devonian reef complex near Nowshera, West Pakistan

The first Paleozoic reef belt on the Indo-Pakistan subcontinent has recently been recognized near the town of Nowshera (lat 34°00′ N., long 72°00′ E.) in northern West Pakistan. It consists of nine separate hills aligned in a 15-mile-long, east-west band rising out of the Peshawar alluvial plain. Each hill is composed of one or more reef cores whose thicknesses range from less than 100 feet to more than 700 feet. The reef cores are separated by relatively unfossiliferous carbonate rocks thinner than the reefs. The reef belt contains a fauna entirely new to Pakistan that has been dated as Early Devonian to to Late Silurian (Ludlovian to Gedinnian). The reef carbonates are the first sediments of possible Silurian age found anywhere in the country and the southernmost Devonian deposits in West Pakistan. Individual reef cores consist of faunal zones or layers that indicate a gradual growth of the reef mass from relatively quiet water upward into rough water. The presence of these reefs and correlative fossiliferous carbonate sediments in the Peshawar area suggests that in Silurian and Devonian times much of northern West Pakistan was covered by warm, shallow seas bordered by reefs or containing reef platforms. The association of these Paleozoic reefs with extensive deposits of fetid black limestones and porous dolomites may indicate economic potential for the accumulation of oil.

Town of Nowshera in northern West Pakistan↗
USGS1971

Boulder Creek batholith, Colorado part III: Fingerprinting discordant zircon ages in a complex intrusion

The apparent ages (32 lead/alpha and 6 Pb 206 /U 238 ) of zircon as plotted on an isochron map of the Boulder Creek batholith define the following pattern: (1) very high ages (1600 to 1900 m.y.) within the outermost border zone on the southwest, south, and southeast; (2) transitional high ages (1300 to 1600 m.y.) within an inner border zone on the east and widening to the south and west to include about one-third of the batholith; (3) transitional low ages (1000 to 1300 m.y.) throughout much of the interior of the northern half; and (4) very low ages (1000 m.y. or less) limited to a small area within the northeast corner. The area of minimum age is shown to be part of the reduced-age aureole surrounding the 77 m.y. hornblende granodiorite stock at Jamestown that intrudes the Silver Plume Granite of the Longs Peak-St. Vrain batholith in the region immediately to the north of the minimum-age area of the Boulder Creek batholith. A southeastward elongation of the area of minimum age is attributed to channelway control of the solutions responsible for the recrystallization of the zircon by those northwest-trending breccia reefs that are cut by, or strike toward, the Laramide intrusion. Statistical studies of five zircon separates used for isotopic work showed that the frequency of grains having partial, or complete, rims of colorless zircon on purple to semiopaque zircon cores increased inversely with measured Pb 206 /U 238 age along a smooth curve that, when extrapolated, connected the point representing age of emplacement (0 percent rims) and the point representing the approximate age of re-crystallization (100 percent rims). Consequently, in the Boulder Creek zircon rim frequency gives a useful estimate of the amount of lead lost relative to uranium and thorium from a given sample during its recrystallization. The microstudy indicated: (1) the surface separating core and rim is a major discontinuity; (2) the greater part of the rims appear to be true overgrowths; and (3) the highest frequency of rims is found in the most metamict zircon. However, in any one sample a significant fraction of the most metamict zircon has been sheltered from reaction, presumably by inclusion within relatively impervious minerals, and remains free of rims. These observations coupled with the map evidence of selective channelway control point to warm solutions rather than dry heat as the agent of recrystallization and lead loss.

Colorado↗
USGS1984

The Loma Seca tuff and the Calabozos caldera: a major ash-flow and caldera complex in the southern Andes of central Chile

A 26 × 14-km composite ring-structure caldera of late Pleistocene age has been discovered and mapped near the Andean crest in central Chile (35°30′S). Rhyodacitic to dacitic zoned ash-flow sheets, each representing 150 to 300 km 3 of magma, were emplaced 0.8, 0.3, and 0.15 m.y. ago; the youngest of the associated collapses was closely followed by resurgent doming of the caldera floor and development of a longitudinal graben. Postcaldera eruptions of dacite and andesite have persisted into Holocene time, and active hot springs are abundant along caldera-marginal and resurgent fault systems, suggesting a significant geothermal-energy resource. The Pleistocene eruption rate of this district and the abundance of older Quaternary to Miocene ash-flow remnants in the 33°S to 36°S segment of the glaciated southern Andes indicate that ash-flow magmatism has been no less important here than in the arid central Andes (16°S–28°S), where ash-flow sheets are far better preserved.

Geological Society of America Bulletin↗
USGS1994

Isotopic complexities and the age of the Delfonte volcanic rocks, eastern Mescal Range, southeastern California: Stratigraphic and tectonic implications

Combined U-Pb zircon, Rb-Sr, 40 Ar/ 39 Ar laser-fusion, and conventional K-Ar geochronology establish a late Early Cretaceous age for the Delfonte volcanic rocks. U-Pb zircon analyses define a lower intercept age of 100.5 ± 2 Ma that is interpreted as the crystallization age of the Delfonte sequence. Argon studies document both xenocrystic contamination and postemplacement Ar loss. Rb-Sr results from mafic lavas at the base of the sequence demonstrate compositionally correlated variations in initial 87 Sr/ 86 Sr ratios (Sr i ) from 0.706 for basalts to 0.716 for andesitic compositions. This covariation indicates substantial mixing of subcontinental lithosphere with Proterozoic upper crust. Correlations between Rb/Sr and Sr i may result not only in pseudoisochrons approaching the age of the crustal component, but also in reasonable but incorrect apparent ages approaching the true age. Ages obtained in this study require that at least some of the thrust faulting in the Mescal Range-Clark Mountain portion of the foreland fold-and-thrust belt occurred later than ca. 100 Ma and was broadly contemporaneous with emplacement of the Keystone thrust plate in the Spring Mountains to the northeast. Comparison of the age and Rb-Sr systematics of ash-flow tuff boulders in the synorogenic Lavinia Wash sequence near Goodsprings, Nevada, with those of the Delfonte volcanic rocks supports a Delfonte source for the boulders. The 99 Ma age of the Lavinia Wash sequence is nearly identical to the Delfonte age, requiring rapid erosion, transport, and deposition following Delfonte volcanism.

Bulletin↗
USGS2007

Geology and complex collapse mechanisms of the 3.72 Ma Hannegan caldera, North Cascades, Washington, USA

Contiguous ring faults of the 8 × 3.5 km Hannegan caldera enclose the Hannegan volcanics in the Cascade arc of northern Washington. The caldera collapsed in two phases, which each erupted rhyolitic ignimbrite (72.3%–75.2% SiO 2 ). The first collapse phase, probably trap-door style, erupted the ≥900-m-thick ignimbrite of Hannegan Peak at 3.722 ± 0.020 Ma. This single cooling unit, generally welded, has an uppermost facies of nonwelded ignimbrite and fine ash. A short period of localized sedimentation followed. Eruption of the ignimbrite of Ruth Mountain then led to a second trap-door collapse as the first-phase partial ring fault propagated to the south to completely enclose the caldera. Wall-rock breccias are intercalated as lenses and megabreccia blocks in both ignimbrites. The minimum intracaldera volume is 55–60 km 3 . No base is exposed, nor are outflow sheets preserved. Caldera collapse and glacial erosion have removed precaldera volcanic rocks, which survive only as intracaldera breccias. Rhyolite dikes and pods, one of which yielded a 40 Ar/ 39 Ar age of 3.72 ± 0.34 Ma, intrude the ring fault and caldera fill. Daciteandesite domes, dikes, and lava flows were emplaced subsequently; one lava flow gives a 40 Ar/ 39 Ar age of 2.96 ± 0.20 Ma. The quartz diorite of Icy Peak and the granite of Nooksack Cirque (plutons with 206 Pb/ 238 U zircon ages of 3.42 ± 0.10 Ma and 3.36 ± 0.20 Ma, respectively) intrude caldera fill and basement rocks on the southwest margin of the caldera. Both plutons are now exceptionally well exposed on high, glacially sculpted peaks within the caldera, indicating erosion of at least 1 km of intracaldera fill. Hannegan caldera anchors the northeast end of a linear NE-SW age-progressive migration of magmatic focus from the Chilliwack batholith to the active Mount Baker volcano.

Washington↗
USGS2010

Age, genesis, and paleoclimatic interpretation of the Sangamon/Loveland complex in the Lower Mississippi Valley, USA

For more than a century, the Sangamon paleosol (the Sangamon) has been an integral part of geologic and pedologic investigations in the central United States, including the Upper Mississippi and Lower Missouri River Valleys. Compositional, pedologic, micromorphologic, stratigraphic, and age data indicate that the prominent reddish paleosol developed in silt-rich deposits of the Lower Mississippi Valley, from southernmost Illinois to northwestern Mississippi, represents multiple periods of soil formation, and is wholly or in part time equivalent to the Sangamon of the central United States. Thermoluminescence data, for localities where the Sangamon developed in loess, indicate that the primary period of loess deposition was from 190 to 130 ka (oxygen isotope stage, OIS6), that loess deposition continued intermittently from 130 to 74 ka (OIS5), and that deposition was wholly or in part coeval with Loveland loess deposition in the central United States. Beryllium-10, chemical, and pedologic data indicate that in the Lower Mississippi Valley: (1) the Sangamon represents a minimum time period of 60-80 k.y.; (2) there were at least two periods of soil formation, ca. 130-90 ka and 74-58 ka (OIS4); and (3) rates of weathering and pedogenesis equaled or exceeded the net loess-accumulation rate until at least 46 ka (OIS3) and resulted in development of a paleosol in the overlying basal Roxana Silt. Along a N-S transect from southern Illinois to western Mississippi, Sangamon macroscopic characteristics as well asthe micro-morphology, chemistry, and mineralogy, suggest a regional paleoclimate during periods of soil formation that: (1) was warm to hot, with a wider range in temperature, precipitation, and evapotranspiration than present; (2) had seasonal to decadal or longer periods of drought; and (3) had down-valley (southward) trends of increasing temperature and precipitation and decreasing seasonality and variation in annualto decadal precipitation. ?? 2011 Geological Society of America.

Geological Society of America Bulletin↗