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USGS2020

Evaluating indicators of marsh vulnerability to sea level rise along a historical marsh loss gradient

Sea level rise (SLR) is threatening coastal marshes, leading to large‐scale marsh loss in several micro‐tidal systems. Early recognition of marsh vulnerability to SLR is critical in these systems to aid managers to take appropriate restoration or mitigation measures. However, it is not clear if current marsh vulnerability indicators correctly assess long‐term stability of the marsh system. In this study, two indicators of marsh stress were studied: (i) the skewness of the marsh elevation distribution, and (ii) the abundance of codominant species in mixtures. We combined high‐precision elevation measurements (GPS), LiDAR imagery, vegetation surveys and water level measurements to study these indicators in an organogenic micro‐tidal system (Blackwater River, Maryland, USA), where large‐scale historical conversion from marshes to shallow ponds resulted in a gradient of increasing marsh loss. The two indicators reveal increasingly stressed marshes along the marsh loss gradient, but suggest that the field site with the most marsh loss seems to experience less stress. For the latter site, previous research indicates that wind waves generated on interior marsh ponds contribute to lateral erosion of surrounding marsh edges and hence marsh loss. The eroded marsh sediment might temporarily provide the remaining marshes with the necessary sediment to keep up with relative SLR. However, this is only a short‐term alleviation, as lateral marsh edge erosion and sediment export lead to severe marsh loss in the long term. Our findings indicate that marsh elevation skewness and the abundance of codominant species in mixtures can be used to supplement existing marsh stress indicators, but that additional indices such as fetch length and the sediment budget should be included to account for lateral marsh erosion and sediment export and to correctly assess long‐term stability of micro‐tidal marshes.

Maryland↗

USGS2015

Gene transcription in polar bears ( Ursus maritimus ) from disparate populations

Polar bears in the Beaufort (SB) and Chukchi (CS) Seas experience different environments due primarily to a longer history of sea ice loss in the Beaufort Sea. Ecological differences have been identified as a possible reason for the generally poorer body condition and reproduction of Beaufort polar bears compared to those from the Chukchi, but the influence of exposure to other stressors remains unknown. We use molecular technology, quantitative PCR, to identify gene transcription differences among polar bears from the Beaufort and Chukchi Seas as well as captive healthy polar bears. We identified significant transcriptional differences among a priori groups (i.e., captive bears, SB 2012, SB 2013, CS 2013) for ten of the 14 genes of interest (i.e., CaM, HSP70, CCR3, TGFβ, COX2, THRα, T-bet, Gata3, CD69, and IL17); transcription levels of DRβ, IL1β, AHR, and Mx1 did not differ among groups. Multivariate analysis also demonstrated separation among the groups of polar bears. Specifically, we detected transcript profiles consistent with immune function impairment in polar bears from the Beaufort Sea, when compared with Chukchi and captive polar bears. Although there is no strong indication of differential exposure to contaminants or pathogens between CS and SB bears, there are clearly differences in important transcriptional responses between populations. Further investigation is warranted to refine interpretation of potential effects of described stress-related conditions for the SB population.

Polar Biology↗

USGS2023

Morphology and paleohydrology of intracrater alluvial fans north of Hellas Basin, Mars

Alluvial fans and sinuous ridges are both important records of the history of fluvial activity on Mars, and they often occur together. We present observations of alluvial fans, many of which exhibit inverted relief, in five craters in the region north of Hellas basin. The observed fans ranged in size from ~10 to 820 km 2 . We identified three primary fan surface morphology classes (chute, degraded, and Inverted) as well as many instances where the morphology transitions from proximal chutes (or, rarely, a cratered degraded surface) to distal ridges corresponding to increasing thermal inertia. Clear superposition relationships at contacts between adjacent fans are rarely observed, suggesting interfingered deposits and concurrent fan development across the region. Localized factors appear to influence fan development as there is no systematic trend in the azimuth range of fan location, size of fan or catchment, as well as the degree of crater filling. Water and sediment availability may be controlled by lithology differences and weather patterns. Many of the fans had a mismatch between catchment and fan volume, corresponding to significant amounts of erosion perhaps due to windblown stripping of fine sediment. However, several notable fans exhibited volumes greater than their corresponding catchments. This may reflect uncertainty in the accuracy of the estimated paleosurface, or it may indicate sediment contributions to the fan from outside the mapped catchment. Ridges, inferred to be the resistant remnants of fluvially transported deposits, were used to estimate flow magnitude in fan construction with computed discharges of 60–400 m 3 /s and corresponding supply rate runoff values ~1–20 mm/h. Acknowledging that width-derived discharge values may overestimate flow conditions due to the likelihood of amalgamated channel deposits, this quantification provides important climate constraints. The upper range of runoff values and discharge rates are quite high, and would require either intense rain storms to generate immediate runoff, or longer-term snow accumulation and subsequent melt-runoff, potentially enhanced by rain-on-snow events. Minimum continuous formation time scales of less than a century are computed, but are incompatible with fan morphology (e.g., superposition relationships, embedded craters) and mechanisms to sustain flows. More realistic lower-limit fan construction times, accounting for modeled precipitation rates from the literature, are tens to hundreds of thousands of years. Fans were active in multiple events spanning the Hesperian to Amazonian periods, requiring transient climate conditions to support the fan aggradation.

Icarus↗

USGS2005

Effects of physical processes on structure and transport of thin zooplankton layers in the coastal ocean

Thin layers of plankton are recurrent features in a variety of coastal systems. These layers range in thickness from a few centimeters to a few meters. They can extend horizontally for kilometers and have been observed to persist for days. Densities of organisms found within thin layers are far greater than those above or below the layer, and as a result, thin layers may play an important role in the marine ecosystem. The paramount objective of this study was to understand the physical processes that govern the dynamics of thin layers of zooplankton in the coastal ocean. We deployed instruments to measure physical processes and zooplankton distribution in northern Monterey Bay; during an 11 d period of persistent upwelling-favorable winds, 7 thin zooplankton layers were observed. These zooplankton layers persisted throughout daylight hours, but were observed to dissipate during evening hours. These layers had an average vertical thickness of 1.01 m. No layers were found in regions where the Richardson number was <0.25. In general, when the Richardson number is <0.25 the water column is unstable, and incapable of supporting thin layers. Thin zooplankton layers were also located in regions of reduced flow. In addition, our observations show that the vertical depth distribution of thin zooplankton layers is modulated by high-frequency internal waves, with periods of 18 to 20 min. Results from this study clearly show an association between physical structure, physical processes and the presence of thin zooplankton layers in Monterey Bay. With this new understanding we may identify other coastal regions that have a high probability of supporting thin layers.

Marine Ecology Progress Series↗

USGS2025

Monitoring cyanobacteria temporal trends in a hypereutrophic lake using remote sensing: From multispectral to hyperspectral

Cyanobacterial harmful algal blooms (cyanoHABs) and associated cyanotoxins are a concern for inland waters. Due to the extensive spatial coverage and frequent availability of satellite images, multispectral remote sensing tools demonstrate utility for monitoring these blooms. The next frontier for remote sensing of cyanoHABs in inland waters is hyperspectral data. Recent and upcoming hyperspectral satellite missions using narrow wavelength imaging spectrometers could have a major impact on advancing our ability to detect, quantify, and characterize cyanobacterial blooms. This study compares multispectral and hyperspectral remote sensing capabilities and processing tools for monitoring cyanoHAB dynamics. We evaluated the temporal trends of cyanoHABs in Clear Lake, California, a hypereutrophic lake with diverse cyanobacteria genera based on 38 sampling events over a five-year monitoring period (2019–2023). We validated the Sentinel-3 Ocean and Land Color Instrument (multispectral) Cyanobacteria Index algorithm for Clear Lake using in situ cyanobacteria measurements, which complemented our field-based evaluation of cyanobacteria trends in Clear Lake. We then demonstrate the advantages of hyperspectral data from both in situ spectroradiometer measurements and full-lake hyperspectral satellite images. We apply the Spectral Mixture Analysis for Surveillance of HABs (SMASH) workflow, a Multiple Endmember Spectral Mixture Analysis (MESMA) algorithm, to the hyperspectral images to assess the potential of satellite imaging spectrometer data to identify cyanobacteria genera – the first study to test this tool outside its original study sites. We developed a Clear Lake-specific cyanobacteria spectral library using our field spectroradiometer measurements to improve SMASH performance in Clear Lake, which supports the continued development of this tool.

California↗

USGS2015

Why are freshwater fish so threatened?

The huge diversity of freshwater fishes is concentrated into an area of habitat that covers only about 1% of the Earth's surface, and much of this limited area has already been extensively impacted and intensively managed to meet human needs (Dudgeon et al ., 2006). As outlined in Chapter 1, the number and proportions of threatened species tend to rise wherever fish diversity coincides with dense human populations, intensive resource use and development pressure. Of particular concern is the substantial proportion of the global diversity of freshwater fishes concentrated within the Mekong and Amazon Basins and west-central Africa (Berra, 2001; Abell et al ., 2008; Dudgeon, 2011; Chapter 1) with extensive exploitation of water resources planned to accelerate in future years (Dudgeon, 2011; Chapter 1). If current trends continue, and the social, political and economic models that have been used to develop industrialised regions of the world over the past two centuries prevail, then the future of a significant proportion of global diversity of freshwater fish species is clearly uncertain. Understanding why so many freshwater fish species are threatened requires some understanding of their biology, diversity, distribution, biogeography and ecology, but also some appreciation of the social, economic and political forces that are causing humans to destroy the natural ecosystems upon which we all ultimately depend. To begin to understand the diversity of freshwater fishes, we first need to consider the processes that generated and continue to sustain the diversity of species we see today. Based on an understanding of how freshwater fish diversity is generated and sustained, we consider how vulnerable or resilient various freshwater fishes are to the range of anthropogenic impacts that impinge on freshwater ecosystems. Finally, we discuss how social, political and economic drivers influence human impacts on natural systems, and the changes needed to current models of development that can lead to a sustainable future for humans and the diverse range of freshwater fish species with which we share our planet. The aim of this chapter is to provide an overview of the key issues and threats driving the declines in freshwater fish diversity identified in Chapter 1; subsequent chapters provide more detail on the key issues and address our options for developing a sustainable future for freshwater fishes.

Book chapter↗

USGS2016

Quantifying resilience

The biosphere is under unprecedented pressure, reflected in rapid changes in our global ecological, social, technological and economic systems. In many cases, ecological and social systems can adapt to these changes over time, but when a critical threshold is surpassed, a system under stress can undergo catastrophic change and reorganize into a different state. The concept of resilience, introduced more than 40 years ago in the ecological sciences, captures the behaviour of systems that can occur in alternative states. The original definition of resilience forwarded by Holling ( 1973 ) is still the most useful. It defines resilience as the amount of disturbance that a system can withstand before it shifts into an alternative stable state. The idea of alternative stable states has clear and profound implications for ecological management. Coral reefs, for example, are high-diversity systems that provide key ecosystem services such as fisheries and coastal protection. Human impacts are causing significant, ongoing reef degradation, and many reefs have shifted from coral- to algal-dominated states in response to anthropogenic pressures such as elevated water temperatures and overfishing. Understanding and differentiating between the factors that help maintain reefs in coral-dominated states vs. those that facilitate a shift to an undesired algal-dominated state is a critical step towards sound management and conservation of these, and other, important social–ecological systems. Resilience has gained popularity among both academicians and laypeople, as a term meant to describe a systems’ ability to withstand disturbance. Resilience has become a buzzword in the last decade, as shown by its increasing appearance in calls for research proposals and scientific citation data bases. The term resilience has in many cases lost the clarity of the original definition and in fact is frequently used in a manner in direct opposition to the original definition. Many current uses of the concept are loose and incorrect. The term is becoming increasingly used in a normative sense (Brand & Jax 2007 ), as if resilience were a desirable quality of systems. However, even systems in highly undesirable states, such as macro-algae dominated reefs, or city cores in poverty traps, may be highly resilient, which is to say they withstand attempts to transform them into different (desirable) states. Operationalizing the concept of resilience for application and management has been difficult. Misuse of the term can have significant negative impacts, because resilience is being used to help guide responses to natural disasters and to assess the sustainability of ecosystems and urban systems and has been driving international research priorities. Resilience has been argued to be a basic emergent property of systems, a process or a rate. We focus on the original concept as described by Holling, which is that of an emergent system property; when a system is in a desirable state and managers wish to enhance resilience, or when the system is in an undesirable state and managers wish to erode resilience and foster a transformation to an alternative state. Fostering or eroding resilience is a process. When a system is perturbed but resilience is not exceeded, then the recovery can be measured as a rate. Several frameworks to operationalize resilience have been proposed. A decade ago, a special feature focused on quantifying resilience was published in the journal Ecosystems (Carpenter, Westley & Turner 2005 ). The approach there was towards identifying surrogates of resilience, but few of the papers proposed quantifiable metrics. Consequently, many ecological resilience frameworks remain vague and difficult to quantify, a problem that this special feature aims to address. However, considerable progress has been made during the last decade (e.g. Pope, Allen & Angeler 2014 ). Although some argue that resilience is best kept as an unquantifiable, vague concept (Quinlan et al . 2016 ), to be useful for managers, there must be concrete guidance regarding how and what to manage and how to measure success (Garmestani, Allen & Benson 2013 ; Spears et al . 2015 ). Ideas such as ‘resilience thinking’ have utility in helping stakeholders conceptualize their systems, but provide little guidance on how to make resilience useful for ecosystem management, other than suggesting an ambiguous, Goldilocks approach of being just right (e.g. diverse, but not too diverse; connected, but not too connected). Here, we clarify some prominent resilience terms and concepts, introduce and synthesize the papers in this special feature on quantifying resilience and identify core unanswered questions related to resilience.

Journal of Applied Ecology↗

USGS2020

Landfill leachate contributes per-/poly-fluoroalkyl substances (PFAS) and pharmaceuticals to municipal wastewater

Widespread disposal of landfill leachate to municipal sewer infrastructure in the United States calls for an improved understanding of the relative organic-chemical contributions to the wastewater treatment plant (WWTP) waste stream and associated surface-water discharge to receptors in the environment. Landfill leachate, WWTP influent, and WWTP effluent samples were collected from three landfill-WWTP systems and compared with analogous influent and effluent samples from two WWTPs that did not receive leachate. Samples were analyzed for 73 per-/poly-fluoroalkyl substances (PFAS), 109 pharmaceuticals, and 21 hormones and related compounds. PFAS were detected more frequently in leachate (92%) than in influent (55%). Total PFAS concentrations in leachate (93,100 ng/L) were more than ten times higher than in influent (6,950 ng/L), and effluent samples (3,730 ng/L). Concentrations of bisphenol A; the nonprescription pharmaceuticals cotinine, lidocaine, nicotine; and the prescription pharmaceuticals amphetamine, carisoprodol, pentoxifylline, and thiabendazole were an order of magnitude higher in landfill leachate than WWTP influent. Leachate load contributions for PFAS (0.78 to 31 g/d), bisphenol A (0.97 to 8.3 g/d), and nonprescription (2.0 to 3.1 g/d) and prescription (0.48 to 2.5 g/d) pharmaceuticals to WWTP influent were generally low (<10 g/d) for most compounds because of high influent-to-leachate volumetric ratios (0.983). No clear differences in concentrations were apparent between effluents from WWTPs receiving landfill leachate and those that did not receive landfill leachate.

Environmental Science: Water Research & Technology↗

USGS2002

Controlled photomosaic map of Callisto JC 15M CMN

This sheet is one in a series of maps of the Galilean satellites of Jupiter at a nominal scale of 1:15,000,000. This series is based on data from the Galileo Orbiter Solid-State Imaging (SSI) camera and the cameras of the Voyager 1 and 2 spacecraft. Mercator and Polar Stereographic projections used for this map of Callisto are based on a sphere having a radius of 2,409.3 km. The scale is 1:8,388,000 at ±56° latitude for both projections. Longitude increases to the west in accordance with the International Astronomical Union (1971) (Seidelmann and others, 2002). The geometric control network was computed at the RAND Corporation using RAND's most recent solution as of April 1999 (Davies and Katayama, 1981; Davies and others, 1998). This process involved selecting control points on the individual images, making pixel measurements of their locations, using reseau locations to correct for geometric distortions, and converting the measurements to millimeters in the focal plane. These data are combined with the camera focal lengths and navigation solutions as input to photogrammetric triangulation software that solves for the best-fit sphere, the coordinates of the control points, the three orientation angles of the camera at each exposure (right ascension, declination, and twist), and an angle (W0) which defines the orientation of Callisto in space. W0-in this solution 259.51°-is the angle along the equator to the east, between the 0° meridian and the equator's intersection with the celestial equator at the standard epoch J2000.0. This solution places the crater Saga at its defined longitude of 326° west (Seidelmann and others, 2002). This global map base uses the best image quality and moderate resolution coverage supplied by Galileo SSI and Voyager 1 and 2 (Batson, 1987; Becker and others, 1998; Becker and others, 1999; Becker and others, 2001). The digital map was produced using Integrated Software for Imagers and Spectrometers (ISIS) (Eliason, 1997; Gaddis and others, 1997; Torson and Becker, 1997). The individual images were radiometrically calibrated and photometrically normalized using a Lunar-Lambert function with empirically derived values (McEwen, 1991; Kirk and others, 2000). A linear correction based on the statistics of all overlapping areas was then applied to minimize image brightness variations. The image data were selected on the basis of overall image quality, reasonable original input resolution (from 20 km/pixel for gap fill to as much as 150 m/pixel), and availability of moderate emission/incidence angles for topography. Although consistency was achieved where possible, different filters were included for global image coverage as necessary: clear for Voyager 1 and 2; clear and green (559 nm) for Galileo SSI. Individual images were projected to a Sinusoidal Equal-Area projection at an image resolution of 1.0 kilometer/pixel. The final constructed Sinusoidal projection mosaic was then reprojected to the Mercator and Polar Stereographic projections included on this sheet. The final mosaic was enhanced using commercial software. Names on this sheet are approved by the International Astronomical Union. Names have been applied for features clearly visible at the scale of this map; for a complete list of nomenclature for Callisto, please see the Gazeteer of Planetary Nomenclature. Font color was chosen only for readability.

IMAP↗

USGS2003

Interseasonal covariability of Sierra Nevada streamflow and San Francisco Bay salinity

The ecosystems of the San Francisco Bay estuary are influenced by the salinity of its waters, which in turn depends on flushing by freshwater inflows from the western slopes of the Sierra Nevada. Estimates of full-natural flows in eight major rivers that flush the Bay are analyzed here by extended empirical-orthogonal-function analyses to characterize distinct ‘modes’ of seasonal flow and runoff variability. These modes provide a clear identification of the seasons in which the various rivers respond to hydroclimatic forcings and the seasons during which the rivers most strongly affect San Francisco Bay salinities. About 60 percent of the runoff variability is shared by the rivers over the course of a year but season-to-season differences among the rivers are more subtly distributed. Autumn and winter streamflows respond directly to concurrent (autumn and winter) precipitation and temperatures. Autumn and winter salinities are dominated by these flows, which in each season reflect mostly variations in flows from the central Sierra Nevada and the large Sacramento River. In contrast, spring runoff-rate and streamflow modes are functions of precipitation and temperature during the entire wet (winter and spring) season and are dominated by rivers of the central and southern Sierra Nevada. In turn, the critical spring salinities depend most on the streamflow fluctuations in those central and southern rivers.

California↗

USGS2021

Mars: Abundant recurring slope lineae (RSL) following the planet-encircling dust event (PEDE) of 2018

Recurring slope lineae (RSL) are dark linear markings on Mars that regrow annually and likely originate from the flow of either liquid water or granular material. Following the great dust storm (or planet-encircling dust event, PEDE) of Mars year (MY) 34, Mars Reconnaissance Orbiter/High Resolution Imaging Science Experiment has seen many more candidate RSL than in typical Mars years. They have been imaged at more than 285 unique locations from August 2018 (when the atmosphere was clearing as the PEDE decayed) to August 2019, about half (157) of which are locations where RSL have not been documented previously. In MY34, 150 active RSL sites were identified in the southern middle latitudes (SML, -60° to -30°), whereas an average of 36 active sites were observed in each previous year (MY28–33). Post-PEDE RSL are also present during southern summer over a wider range of latitude, slope aspect, and L s (areocentric longitude of the sun) than in prior years. These RSL sites usually show evidence for recent dust deposition: obscuration of relatively dark areas, an overall brighter and redder surface than in prior years, and dust devil tracks, which indicate dust lifting by several mechanisms. We speculate that dust-lifting processes may initiate and sustain RSL activity. The RSL may form from flows of dust (perhaps clumped) and/or sand that is destabilized by dust movement or directly mobilized by dust devils. If this is the case, then the otherwise puzzling recurrence and year-to-year variability of RSL activity can be at least partly explained. The dust replenishment varies from year to year, which could explain interannual variations in RSL activity.

Journal of Geophysical Research: Planets↗

USGS2011

Temperature-associated population diversity in salmon confers benefits to mobile consumers

Habitat heterogeneity can generate intraspecific diversity through local adaptation of populations. While it is becoming increasingly clear that population diversity can increase stability in species abundance, less is known about how population diversity can benefit consumers that can integrate across population diversity in their prey. Here we demonstrate cascading effects of thermal heterogeneity on trout–salmon interactions in streams where rainbow trout rely heavily on the seasonal availability of anadromous salmon eggs. Water temperature in an Alaskan stream varied spatially from 5°C to 17.5°C, and spawning sockeye salmon showed population differentiation associated with this thermal heterogeneity. Individuals that spawned early in cool regions of the 5 km long stream were genetically differentiated from those spawning in warmer regions later in the season. Sockeye salmon spawning generates a pulsed resource subsidy that supports the majority of seasonal growth in stream-dwelling rainbow trout. The spatial and temporal structuring of sockeye salmon spawn timing in our focal stream extended the duration of the pulsed subsidy compared to a thermally homogeneous stream with a single population of salmon. Further, rainbow trout adopted movement strategies that exploited the multiple pulses of egg subsidies in the thermally heterogeneous stream. Fish that moved to track the resource pulse grew at rates about 2.5 times higher than those that remained stationary or trout in the reference stream with a single seasonal pulse of eggs. Our results demonstrate that habitat heterogeneity can have important effects on the population diversity of dominant species, and in turn, influence their value to species that prey upon them. Therefore, habitat homogenization may have farther-reaching ecological effects than previously considered.

Ecology↗

USGS1996

Interactions of mercury with dissolved organic carbon in the Florida Everglades

There has been increased awareness by both public and scientific communities over mercury contamination of game fish in South Florida. Effective management strategies for dealing with this problem will require a more thorough understanding of the factors and processes that result in the generation and transport of mercury, and control its reactivity in the Everglades. The role of mercury complexation by dissolved organic carbon (DOC) has been proposed by several investigators as a primary mechanism for the transport of mercury in aquatic systems. However, this relationship has been simply proposed based on a strong correlation between dissolved mercury and DOC concentrations in ground, lake and stream waters. Interactions with DOC may be an important process for controlling the transport and bioavailability of mercury. The issue of carbon reactivity in South Florida is especially relevant due to the high natural production of organic carbon in the peat soils and wetlands, the relatively high carbon content of shallow ground water systems in the region, the interactions of organic matter with mercury, other trace metals, and anthropogenic compounds, accumulation of organic carbon in corals and carbonate precipitates, and the potential changes in the quality and reactivity of dissolved organic carbon (DOC) resulting from land use practices. This study will attempt to meet the need to more clearly understand the dynamics of organic matter mercury interactions in the Florida Everglades by focusing research on the effect of dissolved organic carbon (DOC) on the transport and reactivity of Hg in the Everglades.

Florida↗

USGS2003

Preliminary Mineralogic and Stable Isotope Studies of Altered Summit and Flank Rocks and Osceola Mudflow Deposits on Mount Rainier, Washington

About 5600 years ago part of Mount Rainier?s edifice collapsed with the resultant Osceola Mudflow traveling more than 120 km and covering an area of at least 505 km2. Mineralogic and stable isotope studies were conducted on altered rocks from outcrops near the summit and east flank of the volcano and samples of clasts and matrix from the Osceola Mudflow. Results of these analyses are used to constrain processes responsible for pre-collapse alteration and provide insight into the role of alteration in edifice instability prior to the Osceola collapse event. Jarosite, pyrite, alunite, and kaolinite occur in hydrothermally altered rock exposed in summit scarps formed by edifice collapse events and in altered rock within the east-west structural zone (EWSZ) of the volcano?s east flank. Deposits of the Osceola Mudflow contain clasts of variably altered and unaltered andesite within a clay-rich matrix. Minerals detected in samples from the edifice are also present in many of the clasts. The matrix includes abundant smectite, kaolinite and variably abundant jarosite. Hydrothermal fluid compositions calculated from hydrogen and oxygen isotope data of alunite, and smectite on Mount Rainier reflect mixing of magmatic and meteoric waters. The range in the dD values of modern meteoric water on the volcano (-85 to 155?) reflect the influence of elevation on the dD of precipitation. The d34S and d18OSO4 values of alunite, gypsum and jarosite are distinct but together range from 1.7 to 17.6? and -12.3 to 15.0?, respectively; both parameters increase from jarosite to gypsum to alunite. The variations in sulfur isotope composition are attributed to the varying contributions of disproportionation of magmatic SO2, the supergene oxidation of hydrothermal pyrite and possible oxidation of H2S to the parent aqueous sulfate. The 18OSO4 values of jarosite are the lowest recorded for the mineral, consistent with a supergene origin. The mineralogy and isotope composition of alteration minerals define two and possibly three environments of alteration. At deeper levels magmatic vapor, H2S, SO2 and other gases from venting magmas migrated upward and condensed into the meteoric water. Disproportionation of SO2 into aqueous sulfate and H2S resulted in acid-sulfate (alunite + kaolinite + pyrite) and related argillic and propylitic alteration envelopes in a magmatic hydrothermal environment. At shallow levels H2S reacted with andesite to form pyrite that is associated with smectite along fractures on both the flanks and upper edifice. It is not clear to what extent H2S was oxidized by atmospheric O2 to form aqueous sulfate in a steam-heated environment. Near the ground surface, pyrite is oxidized by atmospheric oxygen resulting in soluble iron-and aluminum-hydroxysulfates. These supergene hydroxysulfates, which may also form around fumaroles from the oxidation of H2S, are subject to continuous solution and redeposition.

Open-File Report↗

USGS2009

Soil CO 2 Flux in the Amargosa Desert, Nevada, during El Nino 1998 and La Nina 1999

Mean annual soil CO2 fluxes from normally bare mineral soil in the Amargosa Desert in southern Nevada, United States, measured with clear and opaque soil CO2-flux chambers (autochambers) were small - <5 millimoles per square meter per day - during both El Nino 1998 and La Nina 1999. The 1998 opaque-chamber flux exceeded 1999 opaque-chamber flux by an order of magnitude, whereas the 1998 clear-chamber flux exceeded 1999 clear-chamber flux by less than a factor of two. These data suggest that above-normal soil moisture stimulated increased metabolic activity, but that much of the extra CO2 produced was recaptured by plants. Fluxes from warm moist soil were the largest sustained fluxes measured, and their hourly pattern is consistent with enhanced soil metabolic activity at some depth in the soil and photosynthetic uptake of a substantial portion of the CO2 released. Flux from cool moist soil was smaller than flux from warm moist soil. Flux from hot dry soil was intermediate between warm-moist and cool-moist fluxes, and clear-chamber flux was more than double the opaque-chamber flux, apparently due to a chamber artifact stemming from a thermally controlled CO2 reservoir near the soil surface. There was no demonstrable metabolic contribution to the very small flux from cool dry soil, which was dominated by diffusive up-flux of CO2 from the water table and temperature-controlled CO2-reservoir up- and down-fluxes. These flux patterns suggest that transfer of CO2 across the land surface is a complex process that is difficult to accurately measure.

Scientific Investigations Report↗

USGS1978

Minerals produced during cooling and hydrothermal alteration of ash flow tuff from Yellowstone drill hole Y-5

A rhyolitic ash-flow tuff in a hydrothermally active area within the Yellowstone caldera was drilled in 1967, and cores were studied to determine the nature and distribution of primary and secondary mineral phases. The rocks have undergone a complex history of crystallization and hydrothermal alteration since their emplacement 600,000 years ago. During cooling from magmatic temperatures, the glassy groundmass underwent either devitrification to alkali feldspar + ??-cristobalite ?? tridymite or granophyric crystallization to alkali feldspar + quartz. Associated with the zones of granophyric crystallization are prismatic quartz crystals in cavities similar to those termed miarolitic in plutonic rocks. Vapor-phase alkali feldspar, tridymite, magnetite, and sporadic ??-cristobalite were deposited in cavities and in void spaces of pumice fragments. Subsequently, some of the vapor-phase alkali feldspar crystals were replaced by microcrystalline quartz, and the vapor-phase minerals were frosted by a coating of saccharoidal quartz. Hydrothermal minerals occur primarily as linings and fillings of cavities and fractures and as altered mafic phenocrysts. Chalcedony is the dominant mineral related to the present hydrothermal regime and occurs as microcrystalline material mixed with various amounts of hematite and goethite. The chalcedony displays intricate layering and was apparently deposited as opal from silica-rich water. Hematite and goethite also replace both mafic phenocrysts and vapor-phase magnetite. Other conspicuous hydrothermal minerals include montmorillonite, pyrite, mordenite, calcite, and fluorite. Clinoptilolite, erionite, illite, kaolinite, and manganese oxides are sporadic. The hydrothermal minerals show little correlation with temperature, but bladed calcite is restricted to a zone of boiling in the tuff and clearly was deposited when CO2 was lost during boiling. Fractures and breccias filled with chalcedony are common throughout Y-5 and may have been produced by rapid disruption of rock caused by sudden decrease of fluid pressure in fractures, most likely a result of fracturing during resurgent doming in this part of the Yellowstone caldera. The chalcedony probably was deposited as opal or ??-cristobalite from a pre-existing silica floc that moved rapidly into the fractures and breccias immediately after the sudden pressure drop. ?? 1978.

Journal of Volcanology and Geothermal Research↗

USGS2025

Relationship of atmospheric nitrogen deposition to soil nitrogen cycling along an elevation gradient in the Colorado Front Range

Microbial processing of atmospheric nitrogen (N) deposition regulates the retention and mobilization of N in soils, with important implications for water quality. Understanding the links between N deposition, microbial communities, N transformations, and water quality is critical as N deposition shifts toward reduced N and remains persistently high in many regions. Here, we investigated these connections along an elevation transect in the Colorado Front Range. Although rates of N deposition and pools of extractable N increased down the elevation transect, soil microbial communities and N transformation rates did not follow clear elevational patterns. The subalpine microbial community was distinct, corresponding to a high C:N ratio and low pH, while the microbial communities at the lower elevation sites were all very similar. Net nitrification, mineralization, and nitrification potential rates were highest at the Plains (1,700 m) and Montane (2,527 m) sites, suggesting that these ecosystems mobilize N. In contrast, the net immobilization of N observed at the Foothills (1,978 m) and Subalpine (3,015 m) sites suggests that these ecosystems retain N deposition. The contrast in N transformation rates between the plains and foothills, both of which receive elevated N deposition, may be due to spatial heterogeneity not captured in this study and warrants further investigation. Stream N concentrations from the subalpine to the foothills were consistently low, indicating that these soils are currently able to process and retain N deposition, but this may be disrupted if drought, wildfire, or land-use change alter the ability of the soils to retain N.

Colorado↗

USGS2023

Differential heat shock protein responses in two species of Pacific salmon and their utility in identifying heat stress

Rapid and accelerating warming of salmon habitat has the potential to lower productivity of Pacific salmon ( Oncorhynchus species) populations. Heat stress biomarkers can indicate where warming is most likely affecting fish populations; however, we often lack clear classifications that separate individuals with and without heat stress needed to make these tools operational. We conducted a heat exposure experiment with trials lasting 12 or 36 h using juvenile Chinook salmon ( Oncorhynchus tshawytscha ) and coho salmon ( Oncorhynchus kisutch ) to validate heat stress biomarkers in white muscle. Following habituation to 13°C, individuals were exposed to water temperatures that increased to 15°C, 17°C, 19°C, 21°C or 23°C. Heat shock protein 70 abundance (HSP70 measured by ELISA) and transcription of 13 genes (mRNA measured by qPCR) including three heat shock protein genes ( hsp70, hsp90, hsp27 ) were measured. A distinct heat stress response was apparent by 21°C in juvenile Chinook salmon and 23°C in juvenile coho salmon using HSP70. A threshold for heat stress classification in Chinook salmon of > 2 ng HSP70 mg .1 total protein identified heat stress in 100% of 21 and 23°C treated individuals compared to 4% in cooler treatments. For coho salmon, > 3 ng HSP70 mg .1 total protein identified heat stress in 100% of 23°C treated individuals compared to 4% in cooler treatments. Transcription from a panel of genes separated individuals between cooler and stressful temperature experiences (≥21°C for Chinook salmon and ≥23°C for coho salmon) with ~ 85% correct classification. Our findings indicate that juvenile Chinook salmon were more temperature-sensitive than juvenile coho salmon and support the use of a HSP70 threshold sampled from muscle for assessing heat stress in individual wild Pacific salmon with an option for non-lethal biopsies for spawning adults.

Conservation Physiology↗