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At least 739 records · Page 41Linked to original sources
USGS2022

Ostracod eye size: A taxonomy-free indicator of the Paleocene-Eocene Thermal Maximum sea level

Deep-time sea-level changes associated with the Paleocene-Eocene Thermal Maximum (PETM) are of great interest to paleoceanographers and paleontologists, especially in shallow marine settings, like the Atlantic Coastal Plain PETM sections of the Eastern North American Continental Shelf. Accurate paleo-water depth reconstruction is essential to properly interpret and contextualize any PETM-associated paleoceanographic and paleoecological changes that are depth-dependent. In addition, our understanding on eustatic sea-level changes in the greenhouse world without polar ice sheets remains limited. Despite this importance of an accurate and robust paleodepth reconstruction, all water depth estimation methods applied for the shallow marine PETM sections suffer from uncertainties and intrinsic/logical flaws. It is therefore important to develop and apply an independent water depth proxy to complement and validate paleodepth estimates derived from the traditional estimation methods based on sedimentary fossil components and lithological features. Here we present the relative eye size of sighted ostracods as a taxonomy-free water depth proxy and apply it to shallow-marine PETM paleodepth reconstruction of the Mattawoman Creek-Billingsley Road (MCBR) core in Maryland, eastern USA. We identified a significant and rapid reduction in water depth of ~40 m within the carbon isotope excursion (CIE) onset consistent with the previous estimation based on benthic foraminifer species associations. This ostracod-eye-based paleodepth reconstruction improves current understanding on the regional paleobathymetry of the Salisbury Embayment and facilitates future studies on continental shelf paleoceanography and paleoecology during the PETM, a rapid, extreme global warming event under long-term greenhouse conditions, which possibly parallels the ongoing anthropogenic warming.

Maryland↗
USGS2011

Evaluation of two forms of electroanesthesia and carbon dioxide for short-term anesthesia in walleye

Anesthetics immobilize fish, reducing physical damage and stress during aquaculture practices, stock assessment, and experimental procedures. Currently, only tricaine methanesulfonate (MS-222) is approved for use as an anesthetic for food fish in Canada and the United States; however, MS-222 can only be used with certain fish species, and treated fish must be held for a specified period of time before release into the wild. Two forms of electroanesthesia and carbon dioxide (CO 2 ) were evaluated as anesthetics for adult walleye Sander vitreus to determine their suitability for use before intracoelomic implantation of telemetry transmitters. Walleyes were subjected to one of three treatment groups: constant direct current (CDC), pulsed direct current (PDC), and CO 2 . Fish subjected to these treatments were monitored for induction (where appropriate) and recovery time and whether these forms of anesthesia were conducive to implanting telemetry transmitters, that is, whether they fit a surgery threshold range of 250–350 s. Additionally, all fish were monitored for posttrial survival, and radiographs were taken to determine whether any vertebral damage was associated with the electroanesthesia treatments. Although all anesthetic treatments successfully immobilized fish for enough time to implant a transmitter, PDC electroanesthesia is recommended because of its immediate induction time, quick recovery, high immediate and short-term survival, and lack of evidence of vertebral abnormalities.

North American Journal of Fisheries Management↗
USGS2016

An analysis of water data systems to inform the Open Water Data Initiative

Improving access to data and fostering open exchange of water information is foundational to solving water resources issues. In this vein, the Department of the Interior's Assistant Secretary for Water and Science put forward the charge to undertake an Open Water Data Initiative (OWDI) that would prioritize and accelerate work toward better water data infrastructure. The goal of the OWDI is to build out the Open Water Web (OWW). We therefore considered the OWW in terms of four conceptual functions: water data cataloging, water data as a service, enriching water data, and community for water data. To describe the current state of the OWW and identify areas needing improvement, we conducted an analysis of existing systems using a standard model for describing distributed systems and their business requirements. Our analysis considered three OWDI-focused use cases—flooding, drought, and contaminant transport—and then examined the landscape of other existing applications that support the Open Water Web. The analysis, which includes a discussion of observed successful practices of cataloging, serving, enriching, and building community around water resources data, demonstrates that we have made significant progress toward the needed infrastructure, although challenges remain. The further development of the OWW can be greatly informed by the interpretation and findings of our analysis.

Journal of the American Water Resources Associatio↗
USGS1993

Sustainability of hatchery-dependent salmonine fisheries in Lake Ontario: The conflict between predator demand and predator supply

The offshore fish community of Lake Ontario is presently dominated by intensively managed, nonnative species: Alewife Alosa pseudoharengus and rainbow smelt Osmerus mordax at the planktivore level and stocked salmonines at the piscivore level. Salmonine stocking rates per unit area of Lake Ontario are the highest in the Great Lakes, and fishery managers are concerned about the sustainability of the fishery under present stocking policies, particularly with the recent collapse of the Lake Michigan fishery for chinook salmon Oncorhynchus tshawytscha . In this paper, we describe and present the results of a simulation model that integrates predator demand estimates derived from bioenergetics, prey and predator population dynamics, and a predation model based on the multiple-species functional response, Model reconstructions of historical alewife biomass trends and salmonine diets corresponded reasonably well with existing data for the period 1978–1992. The simulations suggest that current predator demand does not exceed the threshold beyond which alewife biomass cannot be sustained, but they indicate that the sustainability of the prey fish community is extremely sensitive to fluctuations in overwinter survival of alewife; an additional mortality of 25% in a single winter would be sufficient to cause the collapse of the alewife population. The model includes a number of assumptions and simplifications with a limited empirical basis; better estimates of salmonine survival rates, an evaluation of the importance of spatial and temporal interactions among predators and prey, and incorporation of the effects of recently observed declines in system productivity at lower trophic levels would significantly increase confidence in the model's projections.

Transactions of the American Fisheries Society↗
USGS2017

Intraspecific evolutionary relationships among peregrine falcons in western North American high latitudes

Subspecies relationships within the peregrine falcon ( Falco peregrinus ) have been long debated because of the polytypic nature of melanin-based plumage characteristics used in subspecies designations and potential differentiation of local subpopulations due to philopatry. In North America, understanding the evolutionary relationships among subspecies may have been further complicated by the introduction of captive bred peregrines originating from non-native stock, as part of recovery efforts associated with mid 20 th century population declines resulting from organochloride pollution. Alaska hosts all three nominal subspecies of North American peregrine falcons– F . p . tundrius , anatum , and pealei –for which distributions in Alaska are broadly associated with nesting locales within Arctic, boreal, and south coastal maritime habitats, respectively. Unlike elsewhere, populations of peregrine falcon in Alaska were not augmented by captive-bred birds during the late 20 th century recovery efforts. Population genetic differentiation analyses of peregrine populations in Alaska, based on sequence data from the mitochondrial DNA control region and fragment data from microsatellite loci, failed to uncover genetic distinction between populations of peregrines occupying Arctic and boreal Alaskan locales. However, the maritime subspecies, pealei , was genetically differentiated from Arctic and boreal populations, and substructured into eastern and western populations. Levels of interpopulational gene flow between anatum and tundrius were generally higher than between pealei and either anatum or tundrius . Estimates based on both marker types revealed gene flow between augmented Canadian populations and unaugmented Alaskan populations. While we make no attempt at formal taxonomic revision, our data suggest that peregrine falcons occupying habitats in Alaska and the North Pacific coast of North America belong to two distinct regional groupings–a coastal grouping ( pealei ) and a boreal/Arctic grouping (currently anatum and tundrius )–each comprised of discrete populations that are variously intra-regionally connected.

Alaska↗
USGS2017

Land area change in coastal Louisiana (1932 to 2016)

Coastal Louisiana wetlands are one of the most critically threatened environments in the United States. These wetlands are in peril because Louisiana currently experiences greater coastal wetland loss than all other States in the contiguous United States combined. The analyses of landscape change presented here have utilized historical surveys, aerial, and satellite data to quantify landscape changes from 1932 to 2016. Analyses show that coastal Louisiana has experienced a net change in land area of approximately -4,833 square kilometers (modeled estimate: -5,197 +/- 443 square kilometers) from 1932 to 2016. This net change in land area amounts to a decrease of approximately 25 percent of the 1932 land area. Previous studies have presented linear rates of change over multidecadal time periods which unintentionally suggest that wetland change occurs at a constant rate, although in many cases, wetland change rates vary with time. A penalized regression spline technique was used to determine the model that best fit the data, rather than fitting the data with linear trends. Trend analyses from model fits indicate that coastwide rates of wetland change have varied from -83.5 +/- 11.8 square kilometers per year to -28.01 +/- 16.37 square kilometers per year. To put these numbers into perspective, this equates to long-term average loss rates of approximately an American football field’s worth of coastal wetlands within 34 minutes when losses are rapid to within 100 minutes at more recent, slower rates. Of note is the slowing of the rate of wetland change since its peak in the mid- 1970s. Not only have rates of wetland loss been decreasing since that time, a further rate reduction has been observed since 2010. Possible reasons for this reduction include recovery from lows affected by the hurricanes of 2005 and 2008, the lack of major storms in the past 8 years, a possible slowing of subsidence rates, the reduction in and relocation of oil and gas extraction and infrastructure since the peak of such activities in the late 1960s, and restoration activities. In addition, many wetlands in more exposed positions in the landscape have already been lost. Most notable of the factors listed above is the lack of major storms over the past 8 years. The observed coastwide net “stability” in land area observed over the past 6–8 years does not imply that loss has ceased. Future disturbance events such as a major hurricane impact could change the trajectory of the rates. Sea-level rise is projected to increase at an exponential rate, and that would also expedite the rate of wetland loss.

Louisiana↗
USGS2012

Elevated streamflows increase dam passage by juvenile coho salmon during winter: Implications of climate change in the Pacific Northwest

A 4-year evaluation was conducted to determine the proportion of juvenile coho salmon Oncorhynchus kisutch passing Cowlitz Falls Dam, on the Cowlitz River, Washington, during winter. River and reservoir populations of coho salmon parr were monitored using radiotelemetry to determine if streamflow increases resulted in increased downstream movement and dam passage. This was of interest because fish that pass downstream of Cowlitz Falls Dam become landlocked in Riffe Lake and are lost to the anadromous population. Higher proportions of reservoir-released fish (0.391-0.480) passed Cowlitz Falls Dam than did river-released fish (0.037-0.119). Event-time analyses demonstrated that streamflow increases were important predictors of dam passage rates during the study. The estimated effect of increasing streamflows on the risk of dam passage varied annually and ranged from 9% to 75% for every 28.3 m 3 /s increase in streamflow. These results have current management implications because they demonstrate the significance of dam passage by juvenile coho salmon during winter months when juvenile fish collection facilities are typically not operating. The results also have future management implications because climate change predictions suggest that peak streamflow timing for many watersheds in the Pacific Northwest will shift from late spring and early summer to winter. Increased occurrence of intense winter flood events is also expected. Our results demonstrate that juvenile coho salmon respond readily to streamflow increases and initiate downstream movements during winter months, which could result in increased passage at dams during these periods if climate change predictions are realized in the coming decades.

Washington↗
USGS2007

Current range of the eastern population of Painted Bunting (Passerina ciris). Part II: Winter range

The importance of wintering areas for Neotropical migrants is well established. The wintering range of the eastern population of Painted Bunting (Passerina ciris) is described in detail and presented in maps. The paper also discusses extralimital records from islands in the Caribbean Basin as well as scattered wintering individuals outside the winter range. The possibility of eastern birds wintering on the Yucatan Peninsula and adjacent Central America is considered. An extensive treatment of the protected areas of Peninsular Florida, the northern Bahamas, and Cuba describes the importance of upland habitats within these protected areas for wintering buntings. This information should be useful to land management agencies, conservation organizations, and private landholders for the welfare of the bunting and biodiversity in general and may also be of interest to ornithologists, other biological disciplines, naturalists, and birders.

North American Birds↗
USGS2024

Dust in the Critical Zone: North American case studies

The dust cycle facilitates the exchange of particles among Earth's major systems, enabling dust to traverse ecosystems, cross geographic boundaries, and even move uphill against the natural flow of gravity. Dust in the atmosphere is composed of a complex and ever-changing mixture that reflects the evolving human footprint on the landscape. The emission, transport, and deposition of dust interacts with and connects Critical Zone processes at all spatial and temporal scales. Landscape properties, land use, and climatic factors influence the wind erosion of soil and nutrient loss, which alters the long-term ecological dynamics at erosional locations. Once in the atmosphere, dust particles influence the amount of solar radiation reaching Earth, and interact with longwave (terrestrial) radiation, with cascading effects on the climate system. Finally, the wet and dry deposition of particles influences ecosystem structure, composition, and function over both short and long-term scales. Tracking dust particles from source to sink relies on monitoring and measurement of the geochemical composition and size distribution of the particles, space-borne and ground-based remote sensing, and dust modeling. Dust is linked to human systems via land use and policies that contribute to dust emissions and the health-related consequences of particulate loads and composition. Despite the significant influence dust has in shaping coupled natural-human systems, it has not been considered a key component of the Critical Zone. Here, we demonstrate that dust particles should be included as a key component of the Critical Zone by outlining how dust interacts with and shapes Earth System processes from generation, through transport, to deposition. We synthesize current understanding from global research and identify critical data and knowledge gaps while showcasing case studies from North America.

Earth-Science Reviews↗
USGS2015

U.S. Geological Survey assessment of reserve growth outside of the United States

The U.S. Geological Survey estimated volumes of potential additions to oil and gas reserves for the United States by reserve growth in discovered accumulations. These volumes were derived by using a new methodology developed by the U.S. Geological Survey and reviewed by the American Association of Petroleum Geologists Committee on Resource Evaluation. This methodology was used to assess reserve growth in individual accumulations (reservoirs, groups of reservoirs, or fields). Selected, large, well-studied, conventional accumulations in the United States that are estimated to contribute most to reserve growth were assessed using analysis of geology and engineering practices. Potential additions to oil and gas reserves for large, discovered, conventional accumulations outside of the United States due to reserve growth were assessed using the U.S. accumulations as analogs. Potential oil and gas volumes were assumed to be added to proven plus probable reserves. The U.S. Geological Survey estimated volumes of technically recoverable, conventional petroleum resources resulting from reserve growth for discovered fields outside the United States that have reported in-place oil and gas volumes of 500 million barrels of oil equivalent or greater. The mean volumes of reserve growth were estimated at 665 billion barrels of crude oil; 1,429 trillion cubic feet of natural gas; and 16 billion barrels of natural gas liquids. These volumes constitute a significant portion of the world’s oil and gas resources and represent the potential future growth of current global reserves over time based on better assessment methodology, new technologies, and greater understanding of reservoirs.

Scientific Investigations Report↗
USGS2004

Comparison of some sediment-hosted, stratiform barite deposits in China, the United States, and India

Shifts in world barite production since the 1980s have resulted in China becoming the world's largest barite-producing country followed by the US and India. Most barite produced for use in drilling fluids is derived from black shale- and chert-hosted, stratiform marine deposits. In China, Late Proterozoic to Early Cambrian marine barite deposits occur on the oceanic margins of the Yangtze platform, in the Qinling region in the north and the Jiangnan region in the south. Most US ore-grade deposits are in the Nevada barite belt; most commercial deposits occur in Ordovician and Devonian marine rocks along the western margin of the early Paleozoic North American continent. Production in India is predominantly from a single Middle Proterozoic deposit in a sedimentary basin located on Archean basement in Andrah Pradesh.The geologic and geochemical characteristics of the deposits are consistent with origins from a variety of sedimentary-exhalative processes, with biogenic processes contributing to the concentration of some seafloor barite. Linear distributions of clusters of lenticular deposits suggest a geographic relationship to syndepositional seafloor fault zones. Sulfur isotope data of the barite deposits range from values that are similar to coeval seawater sulfate to significantly higher ??34S values. Strontium isotope values of continental-margin-type deposits in Nevada and China are less radiogenic than those of cratonic-rift deposits (e.g. Meggen and Rammelsberg). Comparison of Lan/ Cen ratios of barite in the Qinling region of China with marine chert ratios suggests a relationship to hydrothermal fluids, whereas ratios from the Jiangnan region and Nevada can be interpreted as reflecting a biogenic influence.The California Borderland provides a potential modern analog where hydrothermal barium is being deposited on the seafloor in fault-block-bounded basins. Anoxic to dysaerobic conditions on some marine basin floors result from upwelling, nutrient-rich currents and high productivity in surface waters. In this setting, biogenic processes could contribute to the concentration of barium from hydrothermal sources. ?? 2003 Published by Elsevier B.V.

Ore Geology Reviews↗
USGS2012

Concurrent speciation in the eastern woodland salamanders (Genus Plethodon):DNA sequences of the complete albumin nuclear and partialmitochondrial 12s genes

Salamanders of the North American plethodontid genus Plethodon are important model organisms in a variety of studies that depend on a phylogenetic framework (e.g., chemical communication, ecological competition, life histories, hybridization, and speciation), and consequently their systematics has been intensively investigated over several decades. Nevertheless, we lack a synthesis of relationships among the species. In the analyses reported here we use new DNA sequence data from the complete nuclear albumin gene (1818 bp) and the 12s mitochondrial gene (355 bp), as well as published data for four other genes (Wiens et al., 2006), up to a total of 6989 bp, to infer relationships. We relate these results to past systematic work based on morphology, allozymes, and DNA sequences. Although basal relationships show a strong consensus across studies, many terminal relationships remain in flux despite substantial sequencing and other molecular and morphological studies. This systematic instability appears to be a consequence of contemporaneous bursts of speciation in the late Miocene and Pliocene, yielding many closely related extant species in each of the four eastern species groups. Therefore we conclude that many relationships are likely to remain poorly resolved in the face of additional sequencing efforts. On the other hand, the current classification of the 45 eastern species into four species groups is supported. The Plethodon cinereus group (10 species) is the sister group to the clade comprising the other three groups, but these latter groups (Plethodon glutinosus [28 species], Plethodon welleri [5 species], and Plethodon wehrlei [2 species]) probably diverged from each other at approximately the same time.

Molecular Phylogenetics and Evolution↗
USGS2006

Geologic and hydrogeologic framework of the Espa?ola basin -- Proceedings of the 5th annual Espa?ola basin workshop, Santa Fe, New Mexico, March 7-8, 2006

This report presents abstracts of technical studies that are focused on the hydrogeologic framework of the Espa?ola basin, a major subbasin of the Cenozoic Rio Grande rift. The Rio Grande, Rio Chama, Santa Fe River, and their tributaries carry important surface water in the Espa?ola basin. Sediments and interbedded volcanic rocks fill the Espa?ola basin and form extensive aquifer systems for ground water. Surface and ground water provide the principal sources of water for most residents of the basin, including people in the cities of Santa Fe, Espa?ola, and Los Alamos as well as Native Americans in several Pueblos. The abstracts describe results of technical studies that were presented either as poster exhibits or oral presentations at the fifth-annual Espa?ola basin workshop, held March 7-8 of 2006 in Santa Fe, New Mexico. The principal goal of this workshop was to share information about ongoing studies. The Espa?ola basin workshop was hosted by the Espa?ola basin technical advisory group (EBTAG) and sponsored by the U.S. Geological Survey, the New Mexico Bureau of Geology and Mineral Resources, and the Water Research Technical Assistance Office of Los Alamos National Laboratory. Abstracts in this report have been grouped into six information themes: Basic Water Data, Water Quality and Water Chemistry, Water Balance and Stream/Aquifer Interaction, Data Integration and Hydrologic Model Testing, Three-Dimensional Hydrogeological Architecture, and Geologic Framework. Abstracts submitted by U.S. Geological Survey authors in this report have had their technical content peer reviewed before they were included in the report. Technical reviews were not required for abstracts submitted by authors outside the USGS, although most did receive peer reviews within their originating agencies. Taken together, the abstracts in this report provide a view of the current status of hydrogeologic research within the Espa?ola basin.

Open-File Report↗
USGS2023

Evaluation of breeding distribution and chronology of North American scoters

North America's scoter species are poorly monitored relative to other waterfowl. Black Melanitta americana , surf M. perspicillata , and white-winged M. deglandi scoter abundance and trend estimates are thus uncertain in many parts of these species' ranges. The most extensive source of waterfowl abundance and distribution data in North America is the Waterfowl breeding population and habitat survey (WBPHS). Although the WBPHS effectively monitors most species, both its timing and geographic coverage may preclude accurate scoter monitoring. Therefore, our goal was to better define when and where scoters breed to help interpret survey results and optimize potential supplemental survey efforts for scoters. We integrated satellite telemetry tracking data from scoters marked at multiple molting, staging, breeding, and wintering areas along the Atlantic and Pacific coasts to quantify continent-wide breeding chronology and distribution. We also examined possible drivers of variation in timing of arrival, length of stay, and departure at nesting locations. We documented a northwest to southeast distribution of estimated breeding sites across Alaska and Canada. On average, scoters arrived at nest sites on 1 June. Surf scoters and Pacific black scoters arrived earliest and departed earliest. Pacific-wintering black and white-winged scoters began breeding earlier than Atlantic-wintering birds. Additionally, birds arrived at nesting locations earlier in years with earlier snowmelt, and later snowmelt reduced lengths of stay for males. Breeding chronology also varied by age group, with adults arriving earlier than subadults. Our study is the first to comprehensively describe spatial variation in timing of breeding of both Atlantic and Pacific populations of all three scoter species across North America. Our results increase our understanding of how current surveys enumerate scoters and will inform possible supplemental efforts to improve continental monitoring of scoter populations.

Wildlife Biology↗
USGS2016

Large-scale changes in bloater growth and condition in Lake Huron

Native Bloaters Coregonus hoyi have exhibited multiple strong year-classes since 2005 and now are the most abundant benthopelagic offshore prey fish in Lake Huron, following the crash of nonnative Alewives Alosa pseudoharengus and substantial declines in nonnative Rainbow Smelt Osmerus mordax . Despite recent recoveries in Bloater abundance, marketable-size (>229 mm) Bloaters remain scarce. We used annual survey data to assess temporal and spatial dynamics of Bloater body condition and lengths at age in the main basin of Lake Huron from 1973 to 2014. Basinwide lengths at age were modeled by cohort for the 1973–2003 year-classes using a von Bertalanffy growth model with time-varying Brody growth coefficient ( k ) and asymptotic length ( ) parameters. Median Bloater weights at selected lengths were estimated to assess changes in condition by modeling weight–length relations with an allometric growth model that allowed growth parameters to vary spatially and temporally. Estimated Bloater lengths at age declined 14–24% among ages 4–8 for all year-classes between 1973 and 2004. Estimates of declined from a peak of 394 mm (1973 year-class) to a minimum of 238 mm (1998 year-class). Observed mean lengths at age in 2014 were at all-time lows, suggesting that year-classes comprising the current Bloater population would have to follow growth trajectories unlike those characterizing the 1973–2003 year-classes to attain marketable size. Furthermore, estimated weights of 250-mm Bloaters (i.e., a large, commercially valuable size-class) declined 17% among all regions from 1976 to 2007. Decreases in body condition of large Bloaters are associated with lower lipid content and may be linked to marked declines in abundance of the amphipods Diporeia spp. in Lake Huron. We hypothesize that since at least 1976, large Bloaters have become more negatively buoyant and may have incurred an increasingly greater metabolic cost performing diel vertical migrations to prey upon the opossum shrimp Mysis diluviana and zooplankton.

Lake Huron↗
USGS2018

Informing our successors: What botanical information for Santa Cruz Island will researchers and conservation managers in the century ahead need the most?

Climate changes are predicted to drive changes in plant species composition and vegetation cover around the world. Preserved specimens and other botanical information that we gather today—a period future practitioners may look back on as an early stage of modern anthropogenic climate change—will be of value to conservation managers and conservation biologists in the decades and centuries ahead. Here, we present suggestions for the systematic collection, long-term curation (in museums, herbaria, and other research institutions), and maintenance of plant specimens, along with associated data and analyses on the plants and vegetation present today and in the past. The primary aim of this systematic survey is to provide information of high value to conservation researchers and managers both in the near term (the next several years) and through the century to come. Such a systematic survey would build on a strong foundation of research and adaptive management on the island. It would fill gaps in less well-studied groups of organisms and identify environmental, ecological, and cultural factors related to current patterns of distribution. It would also archive previously collected data, photographs, and other materials which would otherwise gradually degrade and become inaccessible. As a case study, we use Santa Cruz Island, California, which is managed for conservation. We are confident that the same approach may be applied to other lands and waters around the world. We argue that there is a particular need to collect and archive herbarium specimens and seeds from today's populations, activities largely overlooked in recent decades. We encourage conservation researchers and managers to consider what information will be most important for future managers and to help launch studies, monitoring programs, and collections to prepare their successors for success.

Western North American Naturalist↗
USGS2011

Water velocity, turbulence, and migration rate of subyearling fall Chinook salmon in the free-flowing and impounded Snake River

We studied the migratory behavior of subyearling fall Chinook salmon Oncorhynchus tshawytscha in free-flowing and impounded reaches of the Snake River to evaluate the hypothesis that velocity and turbulence are the primary causal mechanisms of downstream migration. The hypothesis states that impoundment reduces velocity and turbulence and alters the migratory behavior of juvenile Chinook salmon as a result of their reduced perception of these cues. At a constant flow (m3 /s), both velocity (km/d) and turbulence (the SD of velocity) decreased from riverine to impounded habitat as cross-sectional areas increased. We found evidence for the hypothesis that subyearling Chinook salmon perceive velocity and turbulence cues and respond to these cues by varying their behavior. The percentage of the subyearlings that moved faster than the average current speed decreased as fish made the transition from riverine reaches with high velocities and turbulence to upper reservoir reaches with low velocities and turbulence but increased to riverine levels again as the fish moved further down in the reservoir, where velocity and turbulence remained low. The migration rate (km/d) decreased in accordance with longitudinal reductions in velocity and turbulence, as predicted by the hypothesis. The variation in migration rate was better explained by a repeatedmeasures regression model containing velocity (Akaike’s information criterion ¼ 1,769.0) than a model containing flow (2,232.6). We conclude that subyearling fall Chinook salmon respond to changes in water velocity and turbulence, which work together to affect the migration rate.

Transactions of the American Fisheries Society↗
USGS2005

Numerical modeling of an estuary: A comprehensive skill assessment

Numerical simulations of the Hudson River estuary using a terrain-following, three-dimensional model (Regional Ocean Modeling System (ROMS)) are compared with an extensive set of time series and spatially resolved measurements over a 43 day period with large variations in tidal forcing and river discharge. The model is particularly effective at reproducing the observed temporal variations in both the salinity and current structure, including tidal, spring neap, and river discharge-induced variability. Large observed variations in stratification between neap and spring tides are captured qualitatively and quantitatively by the model. The observed structure and variations of the longitudinal salinity gradient are also well reproduced. The most notable discrepancy between the model and the data is in the vertical salinity structure. While the surface-to-bottom salinity difference is well reproduced, the stratification in the model tends to extend all the way to the water surface, whereas the observations indicate a distinct pycnocline and a surface mixed layer. Because the southern boundary coindition is located near the mouth the estuary, the salinity within the domain is particularly sensitive to the specification of salinity at the boundary. A boundary condition for the horizontal salinity gradient, based on the local value of salinity, is developed to incorporate physical processes beyond the open boundary not resolved by the model. Model results are sensitive to the specification of the bottom roughness length and vertical stability functions, insofar as they influence the intensity of vertical mixing. The results only varied slightly between different turbulence closure methods of k-??, k-??, and k-kl. Copyright 2005 by the American Geophysical Union.

New York↗