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USGS2023

Combining resilience and resistance with threat-based approaches for prioritizing management actions in sagebrush ecosystems

The sagebrush biome is a dryland region in the western United States experiencing rapid transformations to novel ecological states. Threat-based approaches for managing anthropogenic and ecosystem threats have recently become prominent, but successfully mitigating threats depends on the ecological resilience of ecosystems. We used a spatially explicit approach for prioritizing management actions that combined a threat-based model with models of resilience to disturbance and resistance to annual grass invasion. The threat-based model assessed geographic patterns in sagebrush ecological integrity (SEI) to identify core sagebrush, growth opportunity, and other rangeland areas. The resilience and resistance model identified ecologically relevant climate and soil water availability indicators from process-based ecohydrological models. The SEI areas and resilience and resistance indicators were consistent—the resilience and resistance indicators showed generally positive relationships with the SEI areas. They also were complementary—SEI areas provided information on intact sagebrush areas and threats, while resilience and resistance provided information on responses to disturbances and management actions. The SEI index and resilience and resistance indicators provide the basis for prioritizing conservation and restoration actions and determining appropriate strategies. The difficulty and time required to conserve or restore SEI areas increase as threats increases and resilience and resistance decrease.

Conservation Science and Practice↗

USGS2007

The microbial community structure in petroleum-contaminated sediments corresponds to geophysical signatures

The interdependence between geoelectrical signatures at underground petroleum plumes and the structures of subsurface microbial communities was investigated. For sediments contaminated with light non-aqueousphase liquids, anomalous high conductivity values have been observed. Vertical changes in the geoelectrical properties of the sediments were concomitant with significant changes in the microbial community structures as determined by the construction and evaluation of 16S rRNA gene libraries. DNA sequencing of clones from four 16S rRNA gene libraries from different depths of a contaminated field site and two libraries from an uncontaminated background site revealed spatial heterogeneity in the microbial community structures. Correspondence analysis showed that the presence of distinct microbial populations, including the various hydrocarbon-degrading, syntrophic, sulfate-reducing, and dissimilatory-iron-reducing populations, was a contributing factor to the elevated geoelectrical measurements. Thus, through their growth and metabolic activities, microbial populations that have adapted to the use of petroleum as a carbon source can strongly influence their geophysical surroundings. Since changes in the geophysical properties of contaminated sediments parallel changes in the microbial community compositions, it is suggested that geoelectrical measurements can be a cost-efficient tool to guide microbiological sampling for microbial ecology studies during the monitoring of natural or engineered bioremediation processes. Copyright ?? 2007, American Society for Microbiology. All Rights Reserved.

Applied and Environmental Microbiology↗

USGS2010

Land-use controls on sources and processing of nitrate in small watersheds: Insights from dual isotopic analysis

Studies have repeatedly shown that agricultural and urban areas export considerably more nitrogen to streams than forested counterparts, yet it is difficult to identify and quantify nitrogen sources to streams due to complications associated with terrestrial and in-stream biogeochemical processes. In this study, we used the isotopic composition of nitrate (??15N-NO3- and ??18O- NO3-) in conjunction with a simple numerical model to examine the spatial and temporal variability of nitrate (NO3-) export across a land-use gradient and how agricultural and urban development affects net removal mechanisms. In an effort to isolate the effects of land use, we chose small headwater systems in close proximity to each other, limiting the variation in geology, surficial materials, and climate between sites. The ??15N and ??18Oof stream NO 3- varied significantly between urban, agricultural, and forested watersheds, indicating that nitrogen sources are the primary determinant of the ??15N-NO3-, while the ??18O-NO3- was found to reflect biogeochemical processes. The greatest NO3- concentrations corresponded with the highest stream ??15N-NO3- values due to the enriched nature of two dominant anthropogenic sources, septic and manure, within the urban and agricultural watersheds, respectively. On average, net removal of the available NO3- pool within urban and agricultural catchments was estimated at 45%. The variation in the estimated net removal of NO3- from developed watersheds was related to both drainage area and the availability of organic carbon. The determination of differentiated isotopic land-use signatures and dominant seasonal mechanisms illustrates the usefulness of this approach in examining the sources and processing of excess nitrogen within headwater catchments. ?? 2010 by the Ecological Society of America.

Ecological Applications↗

USGS2008

Moderate Resolution Imaging Spectroradiometer (MODIS) Overview

The Moderate Resolution Imaging Spectroradiometer (MODIS) is an instrument that collects remotely sensed data used by scientists for monitoring, modeling, and assessing the effects of natural processes and human actions on the Earth's surface. The continual calibration of the MODIS instruments, the refinement of algorithms used to create higher-level products, and the ongoing product validation make MODIS images a valuable time series (2000-present) of geophysical and biophysical land-surface measurements. Carried on two National Aeronautics and Space Administration (NASA) Earth Observing System (EOS) satellites, MODIS acquires morning (EOS-Terra) and afternoon (EOS-Aqua) views almost daily. Terra data acquisitions began in February 2000 and Aqua data acquisitions began in July 2002. Land data are generated only as higher-level products, removing the burden of common types of data processing from the user community. MODIS-based products describing ecological dynamics, radiation budget, and land cover are projected onto a sinusoidal mapping grid and distributed as 10- by 10-degree tiles at 250-, 500-, or 1,000-meter spatial resolution. Some products are also created on a 0.05-degree geographic grid to support climate modeling studies. All MODIS products are distributed in the Hierarchical Data Format-Earth Observing System (HDF-EOS) file format and are available through file transfer protocol (FTP) or on digital video disc (DVD) media. Versions 4 and 5 of MODIS land data products are currently available and represent 'validated' collections defined in stages of accuracy that are based on the number of field sites and time periods for which the products have been validated. Version 5 collections incorporate the longest time series of both Terra and Aqua MODIS data products.

Fact Sheet↗

USGS2019

Design and methods of the U.S. Geological Survey Northeast Stream Quality Assessment (NESQA), 2016

During 2016, as part of the National Water-Quality Assessment Project (NAWQA), the U.S. Geological Survey conducted the Northeast Stream Quality Assessment (NESQA) to investigate stream quality in the northeastern United States. The goal of the NESQA was to assess the health of wadeable streams in the region by characterizing multiple water-quality factors that are stressors to aquatic life and by evaluating the relation between these stressors and the condition of biological communities. Urbanization, agriculture, and human modifications to streamflow are anthropogenic changes that greatly affect water quality in the region; consequently, the study design primarily selected sites and targeted stressors associated with these activities. The NESQA built on a prior NAWQA study conducted in the region in 2014, the Atlantic Highlands flow-ecology study, which investigated the effects of anthropogenically modified flows on aquatic biological communities in primarily forested watersheds. Land-cover data for the NESQA were used to identify and select sites within the region that had watersheds ranging in levels of urban and agricultural development. A total of 95 sites were selected: 67 on streams in watersheds representing a range of urban land use, 13 on streams in watersheds with some degree of agricultural land use, and 15 on streams in predominantly forested watersheds with little development. Depending on land-cover characteristics, sites were sampled weekly for metal and organic contaminants, nutrients, and sediment for either a 9-week period that began the week of June 6, 2016, or a 4-week period that begin the week of July 11, 2016. Beginning August 1, 2016, and for about 2 weeks, an ecological survey was conducted at every site to assess stream habitat, and algal, benthic invertebrate, and fish communities. Additional samples collected during the ecological surveys were streambed sediment for chemical analysis and toxicity testing, and fish tissue for mercury analysis. This report describes the various study components and methods of the NESQA and describes a precursor effort for the Atlantic Highlands flow-ecology study. Details are presented for measurements of water quality, sediment chemistry, streamflow, and ecological surveys of stream biota and habitat, as well as processes of sample analysis, quality assurance and quality control, and data management.

Open-File Report↗

USGS2011

Aquatic ecology of the Elwha River estuary prior to dam removal: Chapter 7 in Coastal habitats of the Elwha River, Washington--biological and physical patterns and processes prior to dam removal

The removal of two long-standing dams on the Elwha River in Washington State will initiate a suite of biological and physical changes to the estuary at the river mouth. Estuaries represent a transition between freshwater and saltwater, have unique assemblages of plants and animals, and are a critical habitat for some salmon species as they migrate to the ocean. This chapter summarizes a number of studies in the Elwha River estuary, and focuses on physical and biological aspects of the ecosystem that are expected to change following dam removal. Included are data sets that summarize (1) water chemistry samples collected over a 16 month period; (2) beach seining activities targeted toward describing the fish assemblage of the estuary and migratory patterns of juvenile salmon; (3) descriptions of the aquatic and terrestrial invertebrate communities in the estuary, which represent an important food source for juvenile fish and are important water quality indicators; and (4) the diet and growth patterns of juvenile Chinook salmon in the lower Elwha River and estuary. These data represent baseline conditions of the ecosystem after nearly a century of changes due to the dams and will be useful in monitoring the changes to the river and estuary following dam removal.

Washington↗

USGS2024

Large-scale dam removal and ecosystem restoration

Rivers underpin vital ecosystems that support aquatic and terrestrial biodiversity and many ecosystem services, including food, water, culture, and recreation ( Dudgeon et al. 2006 ). After centuries of building dams on rivers across the world, river restoration via dam removal is receiving increased public attention, financial investment, and scientific study because of various issues of regarding dam infrastructure, such as obsolescence, sedimentation, and ecosystem degradation ( Duda and Bellmore, 2022 ; East and Grant, 2023 ). Most dam removal projects to date have focused on smaller structures, but larger structures > 10 m tall have also started to be removed in increasing numbers. Recent estimates suggest that only a small fraction of all dam removals have been scientifically studied, with most focused on small dams and short time scales ( Bellmore et al., 2016 ). Understanding the outcomes of large dam removal, where case studies are much more limited, depends on sustained research and monitoring efforts aimed at understanding restoration processes over large spatial and temporal scales ( Figure 1 ). The ecological and socio-ecological study of large dam removal represents a new frontier in dam removal research: projects are larger, more recent, and provide an opportunity to understand the complex ecological changes and impacts to humans that occur with these transformative restoration projects.

Frontiers in Ecology and Evolution↗

USGS2026

Global framework for communication of biological invasion risks

Biological invasions, driven by the spread of non-native species, have become a critical global issue because of their far-reaching ecological and socioeconomic impacts. Effective communication of the risks of biological invasions is essential for implementing robust policy and legislation and gaining public support for conservation efforts. However, current policies often suffer from fragmentation and ineffectiveness, largely due to inadequate risk communication and complex multilevel governance. To address this challenge, we develop a global framework designed to enhance clearer communication about biological invasion risks. The framework contextualizes key terms across three domains in invasion science: species invasiveness, risk analysis, and decision support tools. Using both diffusion-of-English and ecology-of-language paradigms, and following a three-step process involving preliminary consensus, AI querying, and ground-truthing with final consensus, we validate the framework in 70 non-English languages which, together with English, have official status in at least one country and collectively cover all 195 countries worldwide. Our findings reveal that while terminology for risk analysis is well established, terminology for species invasiveness and, especially, for decision support tools remains underdeveloped in many languages, hindering effective communication and policy implementation. Our framework underscores the importance of cultural and political neutrality. By promoting clearer risk communication among scientists, policymakers, and the public globally, we aim to reduce policy fragmentation and foster enhanced collaboration in risk mitigation. We recommend expanding multilingual decision support tools to include the full risk analysis process: risk identification, risk assessment, and risk management. This will support intergovernmental mitigation efforts and promote a unified global response to biological invasions.

Management of Biological Invasions↗

USGS1986

Forested wetlands of the Southeast: Review of major characteristics and role in maintaining water quality

Forested wetlands occupying floodplains of major rivers in the Southeast are highly productive and diverse ecological systems. The wetlands are produced and maintained by fluvial processes and unique hydrologic regimes consisting of periodic flooding and subsequent drydown. Fluctuations in soil chemistry and biology resulting from this flooding and drydown provide a broad range of environmental conditions that are important in determining the role of forested wetlands in maintaining and improving water quality. The periodic shift between aerobic and anaerobic conditions in floodplain soils in response to flooding facilitates the assimilation of nutrients and organic matter, hastens the degradation of persistent pesticides, and decreases the bioavailability of heavy metals.

Resource Publication↗

USGS2014

Thresholds for conservation and management: structured decision making as a conceptual framework

A conceptual framework is provided for considering the threshold concept in natural resource management and conservation. We define three kinds of thresholds relevant to management and conservation. Ecological thresholds are values of system state variables at which small changes bring about substantial or specified changes in system dynamics. They are frequently incorporated into ecological models used to project system responses to management actions. Utility thresholds are components of management objectives and are values of state or performance variables at which small changes yield substantial changes in the value of the management outcome. Decision thresholds are values of system state variables at which small changes prompt changes in management actions in order to reach specified management objectives. Decision thresholds are derived from the other components of the decision process.We advocate a structured decision making (SDM) approach within which the following components are identified: objectives (possibly including utility thresholds), potential actions, models (possibly including ecological thresholds), monitoring program, and a solution algorithm (which produces decision thresholds). Adaptive resource management (ARM) is described as a special case of SDM developed for recurrent decision problems that are characterized by uncertainty. We believe that SDM, in general, and ARM, in particular, provide good approaches to conservation and management. Use of SDM and ARM also clarifies the distinct roles of ecological thresholds, utility thresholds, and decision thresholds in informed decision processes.

Book↗

USGS1996

South Florida wetlands ecosystem; biogeochemical processes in peat

The South Florida wetlands ecosystem is an environment of great size and ecological diversity (figs. 1 and 2). The landscape diversity and subtropical setting of this ecosystem provide a habitat for an abundance of plants and wildlife, some of which are unique to South Florida. South Florida wetlands are currently in crisis, however, due to the combined effects of agriculture, urbanization, and nearly 100 years of water management. Serious problems facing this ecosystem include (1) phosphorus contamination producing nutrient enrichment, which is causing changes in the native vegetation, (2) methylmercury contamination of fish and other wildlife, which poses a potential threat to human health, (3) changes in the natural flow of water in the region, resulting in more frequent drying of wetlands, loss of organic soils, and a reduction in freshwater flow to Florida Bay, (4) hypersalinity, massive algal blooms, and seagrass loss in parts of Florida Bay, and (5) a decrease in wildlife populations, especially those of wading birds. This U.S. Geological Survey (USGS) project focuses on the role of organic-rich sediments (peat) of South Florida wetlands in regulating the concentrations and impact of important chemical species in the environment. The cycling of carbon, nitrogen, phosphorus, and sulfur in peat is an important factor in the regulation of water quality in the South Florida wetlands ecosystem. These elements are central to many of the contamination issues facing South Florida wetlands, such as nutrient enrichment, mercury toxicity, and loss of peat. Many important chemical and biological reactions occur in peat and control the fate of chemical species in wetlands. Wetland scientists often refer to these reactions as biogeochemical processes, because they are chemical reactions usually mediated by microorganisms in a geological environment. An understanding of the biogeochemical processes in peat of South Florida wetlands will provide a basis for evaluating the effects on water quality of (1) constructing buffer wetlands to alleviate nutrient contamination and (2) replumbing the ecosystem to restore natural water flow. The results may also suggest new approaches for solving problems of contamination and water quality in these wetlands. A second focus of this project will be on the geochemical history of the South Florida ecosystem. Peat is a repository of the history of past environmental conditions in the wetland. Before effective action can be taken to correct many of the problems facing these wetlands, we must first study the biogeochemistry of the peat at depth in order to understand whether current problems are the result of recent human activity or are part of a long-term natural cycle. Coordination with other (USGS) projects for South Florida is ongoing. These projects are studying the biological history of the ecosystem by using pollen and shells buried in the peat, together with procedures for dating the peat at various depths, to develop an overall ecosystem history model, with emphasis on the last 100 years.

Fact Sheet↗

USGS2010

Surficial geologic map of the Amboy 30' x 60' quadrangle, San Bernardino County, California

The surficial geologic map of the Amboy 30' x 60' quadrangle presents characteristics of surficial materials for an area of approximately 5,000 km2 in the eastern Mojave Desert of southern California. This map consists of new surficial mapping conducted between 2000 and 2007, as well as compilations from previous surficial mapping. Surficial geologic units are mapped and described based on depositional process and age categories that reflect the mode of deposition, pedogenic effects following deposition, and, where appropriate, the lithologic nature of the material. Many physical properties were noted and measured during the geologic mapping. This information was used to classify surficial deposits and to understand their ecological importance. We focus on physical properties that drive hydrologic, biologic, and physical processes such as particle-size distribution (PSD) and bulk density. The database contains point data representing locations of samples for both laboratory determined physical properties and semiquantitative field-based information in the database. We include the locations of all field observations and note the type of information collected in the field to help assist in assessing the quality of the mapping. The publication is separated into three parts: documentation, spatial data, and printable map graphics of the database. Documentation includes this pamphlet, which provides a discussion of the surficial geology and units and the map. Spatial data are distributed as ArcGIS Geodatabase in Microsoft Access format and are accompanied by a readme file, which describes the database contents, and FGDC metadata for the spatial map information. Map graphics files are distributed as Postscript and Adobe Portable Document Format (PDF) files that provide a view of the spatial database at the mapped scale.

Scientific Investigations Map↗

USGS2010

Surficial geologic map of the Amboy 30' x 60' quadrangle, San Bernardino County, California

The surficial geologic map of the Amboy 30' x 60' quadrangle presents characteristics of surficial materials for an area of approximately 5,000 km 2 in the eastern Mojave Desert of southern California. This map consists of new surficial mapping conducted between 2000 and 2007, as well as compilations from previous surficial mapping. Surficial geologic units are mapped and described based on depositional process and age categories that reflect the mode of deposition, pedogenic effects following deposition, and, where appropriate, the lithologic nature of the material. Many physical properties were noted and measured during the geologic mapping. This information was used to classify surficial deposits and to understand their ecological importance. We focus on physical properties that drive hydrologic, biologic, and physical processes such as particle-size distribution (PSD) and bulk density. The database contains point data representing locations of samples for both laboratory determined physical properties and semiquantitative field-based information in the database. We include the locations of all field observations and note the type of information collected in the field to help assist in assessing the quality of the mapping. The publication is separated into three parts: documentation, spatial data, and printable map graphics of the database. Documentation includes this pamphlet, which provides a discussion of the surficial geology and units and the map. Spatial data are distributed as ArcGIS Geodatabase in Microsoft Access format and are accompanied by a readme file, which describes the database contents, and FGDC metadata for the spatial map information. Map graphics files are distributed as Postscript and Adobe Portable Document Format (PDF) files that provide a view of the spatial database at the mapped scale.

California↗

USGS2014

Bioavailability and bioaccumulation of metal-based engineered nanomaterials in aquatic environments: Concepts and processes

Bioavailability of Me-ENMs to aquatic organisms links their release into the environment to ecological implications. Close examination shows some important differences in the conceptual models that define bioavailability for metals and Me-ENMs. Metals are delivered to aquatic animals from Me-ENMs via water, ingestion, and incidental surface exposure. Both metal released from the Me-ENM and uptake of the nanoparticle itself contribute to bioaccumulation. Some mechanisms of toxicity and some of the metrics describing exposure may differ from metals alone. Bioavailability is driven by complex interaction of particle attributes, environmental transformations, and biological traits. Characterization of Me-ENMs is an essential part of understanding bioavailability and requires novel methodologies. The relative importance of the array of processes that could affect Me-ENM bioavailability remains poorly known, but new approaches and models are developing rapidly. Enough is known, however, to conclude that traditional approaches to exposure assessment for metals would not be adequate to assess risks from Me-ENMs.

Book chapter↗

USGS2017

Balancing stability and flexibility in adaptive governance: An analysis of tools available in U.S. environmental law

Adaptive governance must work “on the ground,” that is, it must operate through structures and procedures that the people it governs perceive to be legitimate and fair, as well as incorporating processes and substantive goals that are effective in allowing social-ecological systems (SESs) to adapt to climate change and other impacts. To address the continuing and accelerating alterations that climate change is bringing to SESs, adaptive governance generally will require more flexibility than prior governance institutions have often allowed. However, to function as good governance, adaptive governance must pay real attention to the problem of how to balance this increased need for flexibility with continuing governance stability so that it can foster adaptation to change without being perceived or experienced as perpetually destabilizing, disruptive, and unfair. Flexibility and stability serve different purposes in governance, and a variety of tools exist to strike different balances between them while still preserving the governance institution’s legitimacy among the people governed. After reviewing those purposes and the implications of climate change for environmental governance, we examine psychological insights into the structuring of adaptive governance and the variety of legal tools available to incorporate those insights into adaptive governance regimes. Because the substantive goals of governance systems will differ among specific systems, we do not purport to comment on what the normative or substantive goals of law should be. Instead, we conclude that attention to process and procedure (including participation), as well as increased use of substantive standards (instead of rules), may allow an increased level of substantive flexibility to operate with legitimacy and fairness, providing the requisite levels of psychological, social, and economic stability needed for communities to adapt successfully to the Anthropocene.

Ecology and Society↗

USGS2015

Climate change impacts on ecosystems and ecosystem services in the United States: Process and prospects for sustained assessment

The third United States National Climate Assessment emphasized an evaluation of not just the impacts of climate change on species and ecosystems, but also the impacts of climate change on the benefits that people derive from nature, known as ecosystem services. The ecosystems, biodiversity, and ecosystem services component of the assessment largely drew upon the findings of a transdisciplinary workshop aimed at developing technical input for the assessment, involving participants from diverse sectors. A small author team distilled and synthesized this and hundreds of other technical input to develop the key findings of the assessment. The process of developing and ranking key findings hinged on identifying impacts that had particular, demonstrable effects on the U.S. public via changes in national ecosystem services. Findings showed that ecosystem services are threatened by the impacts of climate change on water supplies, species distributions and phenology, as well as multiple assaults on ecosystem integrity that, when compounded by climate change, reduce the capacity of ecosystems to buffer against extreme events. As ecosystems change, such benefits as water sustainability and protection from storms that are afforded by intact ecosystems are projected to decline across the continent due to climate change. An ongoing, sustained assessment that focuses on the co-production of actionable climate science will allow scientists from a range of disciplines to ascertain the capability of their forecasting models to project environmental and ecological change and link it to ecosystem services; additionally, an iterative process of evaluation, development of management strategies, monitoring, and reevaluation will increase the applicability and usability of the science by the U.S. public.

Climatic Change↗

USGS2016

The automated reference toolset: A soil-geomorphic ecological potential matching algorithm

Ecological inventory and monitoring data need referential context for interpretation. Identification of appropriate reference areas of similar ecological potential for site comparison is demonstrated using a newly developed automated reference toolset (ART). Foundational to identification of reference areas was a soil map of particle size in the control section (PSCS), a theme in US Soil Taxonomy. A 30-m resolution PSCS map of the Colorado Plateau (366,000 km 2 ) was created by interpolating ∼5000 field soil observations using a random forest model and a suite of raster environmental spatial layers representing topography, climate, general ecological community, and satellite imagery ratios. The PSCS map had overall out of bag accuracy of 61.8% (Kappa of 0.54, p < 0.0001), and an independent validation accuracy of 93.2% at a set of 356 field plots along the southern edge of Canyonlands National Park, Utah. The ART process was also tested at these plots, and matched plots with the same ecological sites (ESs) 67% of the time where sites fell within 2-km buffers of each other. These results show that the PSCS and ART have strong application for ecological monitoring and sampling design, as well as assessing impacts of disturbance and land management action using an ecological potential framework. Results also demonstrate that PSCS could be a key mapping layer for the USDA-NRCS provisional ES development initiative.

Soil Science Society of America Journal↗

USGS1989

National Research Program of the Water Resources Division, U.S. Geological Survey: Fiscal Year 1988

The National Research Program (NRP) of the US Geological Survey 's Water Resources Division (WRD) had its beginnings in the late 1950 's when ' core research ' was added as a line item to the Congressional budget. Since that time, the NRP has grown to encompass a broad spectrum of scientific investigations. The sciences of hydrology, mathematics, chemistry, physics, ecology, biology, geology, and engineering are used to gain a fundamental understanding of the processes that affect the availability, movement, and quality of the Nation 's water resources. The NRP is located principally in Reston, VA, Denver, CO, and Menlo Park , CA. The NRP is subdivided into six disciplines as follows: (1) Ecology; (2) Geomorphology and Sediment Transport; (3) Groundwater Chemistry; (4) Groundwater Hydrology; (5) Surface Water Chemistry; and (6) Surface Water Hydrology. The report provides current information about the NRP on an annual basis. Organized by the six research disciplines, the volume contains a summary of the problem, objective, approach, and progress for each project that was active during fiscal year 1988.

Open-File Report↗