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USGS2016

Using hierarchical Bayesian multi-species mixture models to estimate tandem hoop-net based habitat associations and detection probabilities of fishes in reservoirs

Species distribution models are useful tools to evaluate habitat relationships of fishes. We used hierarchical Bayesian multispecies mixture models to evaluate the relationships of both detection and abundance with habitat of reservoir fishes caught using tandem hoop nets. A total of 7,212 fish from 12 species were captured, and the majority of the catch was composed of Channel Catfish Ictalurus punctatus (46%), Bluegill Lepomis macrochirus (25%), and White Crappie Pomoxis annularis (14%). Detection estimates ranged from 8% to 69%, and modeling results suggested that fishes were primarily influenced by reservoir size and context, water clarity and temperature, and land-use types. Species were differentially abundant within and among habitat types, and some fishes were found to be more abundant in turbid, less impacted (e.g., by urbanization and agriculture) reservoirs with longer shoreline lengths; whereas, other species were found more often in clear, nutrient-rich impoundments that had generally shorter shoreline length and were surrounded by a higher percentage of agricultural land. Our results demonstrated that habitat and reservoir characteristics may differentially benefit species and assemblage structure. This study provides a useful framework for evaluating capture efficiency for not only hoop nets but other gear types used to sample fishes in reservoirs.

Oklahoma↗

USGS2016

Remote estimation of surface pCO2 on the West Florida Shelf

Surface p CO 2 data from the West Florida Shelf (WFS) have been collected during 25 cruise surveys between 2003 and 2012. The data were scaled up using remote sensing measurements of surface water properties in order to provide a more nearly synoptic map of p CO 2 spatial distributions and describe their temporal variations. This investigation involved extensive tests of various model forms through parsimony and Principal Component Analysis, which led to the development of a multi-variable empirical surface p CO 2 model based on concurrent MODIS (Moderate Resolution Imaging Spectroradiometer) estimates of surface chlorophyll a concentrations (CHL, mg m −3 ), diffuse light attenuation at 490 nm (Kd_Lee, m −1 ), and sea surface temperature (SST, °C). Validation using an independent dataset showed a p CO 2 Root Mean Square Error (RMSE) of <12 µatm and a 0.88 coefficient of determination (R 2 ) for measured and model-predicted p CO 2 ranging from 300 to 550 µatm. The model was more sensitive to SST than to CHL and Kd_Lee, with a 1 °C change in SST leading to a ~16 µatm change in the predicted p CO 2 . Application of the model to the entire WFS MODIS time series between 2002 and 2014 showed clear seasonality, with maxima (~450 µatm) in summer and minima (~350 µatm) in winter. The seasonality was positively correlated to SST (high in summer and low in winter) and negatively correlated to CHL and Kd_Lee (high in winter and low in summer). Inter-annual variations of p CO 2 were consistent with inter-annual variations of SST, CHL, and Kd_Lee. These results suggest that surface water p CO 2 of the WFS can be estimated, with known uncertainties, from remote sensing. However, while the general approach of empirical regression may work for waters from other areas of the Gulf of Mexico, model coefficients need to be empirically determined in a similar fashion.

Continental Shelf Research↗

USGS1960

Geology and ground water in Napa and Sonoma Valleys, Napa and Sonoma Counties, California

Napa and Sonoma Valleys are adjacent alluvium-filled valleys about 40 miles northeast of San Francisco. They occupy alined and structurally controlled depressions in the northern Coast Ranges physiographic province and drain south into San Pablo Bay. The valleys are surrounded and underlain by unconsolidated marine and continental sediments and volcanic rocks of Pliocene and Pleistocene age, which are water bearing in large part and together make up relatively extensive ground-water basins. Napa Valley, the eastern valley, is the larger and has a valley-floor area of about 85 square miles. Sonoma Valley has a valley-floor area of about 35 square miles; in addition, about 10 square miles is unreclaimed tidal marsh. The rock units of Napa and Sonoma Valleys are divided into four classes on the basis of their distribution and relative capacity to yield water: (a) Consolidated virtually non-water-bearing chiefly sedimentary (some metamorphic) rocks that range in age from Jurassic ( ?) to Pliocene; (b) marine shale and sand of the Petaluma formation (Pliocene) and the Merced formation (Pliocene and Pleistocene) that do not crop out within Napa or Sonoma Valleys but perhaps are penetrated by some deep wells drilled in Sonoma Valley; (c) Sonoma volcanics of Pliocene age, parts of which are non-water-bearing and parts of which locally yield large quantities of water; and (d) unconsolidated alluvial deposits mainly of Quaternary age. The deposits of classes (c) and (d) contain the most important aquifers in the area. Most of the water used in these valleys is pumped from wells in the younger and older alluvium in the Huichica and Glen Ellen formations. and in the Sonoma volcanics. The principal aquifers are the younger and older alluvium. but appreciable quantities of water are pumped locally from the Sonoma volcanics. The Huichica and Glen Ellen formations yield water in small quantities and at most places supply water only for limited domestic uses. The younger alluvium COIM3ists of interbedded deposits of unconsolidated gravel. sand, silt. and. locally, peat. These deposits underlie the flood plains and channels of the Napa River. Sonoma Creek, and their tributaries, low alluvial fans or plains graded to these streams. and the tidal marshlands. The older alluvium of Napa and Sonoma Valleys is composed of lenticular deposits of unconsolidated and poorly sorted clay, silt. sand. and gravel. Where exposed, claypan or hardpan soil is characteristically developed at the surface. The Huichica formation is composed of deformed continental beds consisting mostly of yellow silt with some interbedded lenses of silt and gravel, and silt and boulders. At the base are beds of redeposited volcanic material, silt, clay, and lenses of coarse gravel and boulders. The Glen Ellen fcrmation consists of alluvial clay, silt, sand, and gravel in clearly stratified but generally lenticular beds. The Sonoma volcanics constitute a thick and highly variate series of continental volcanic rocks, including andesite, basalt, and minor rhyolite flows and interbedded coarse- to fine-grained pyroclastic tuff and breccia, redeposited tuff and pumice, and diatomaceous mud, silt, and sand. A prominent body of rhyolite flows and tuff with some obsidian and perlitic glass, called the St. Helena rhyolite member, occurs in the upper part. Estimated ground-water pumpage for all uses in the year 1949-50 was about 5,600 acre-feet in Napa Valley and about 2,400 acre-feet in Sonoma Valley. Of this quantity the amounts pumped for irrigation were about 2,900 and 1,900 acre-feet, respectively. Water levels in wells in the central parts of the valleys range from a few feet above the land surface to about 50 feet below, with an average of about 25 feet. The quality of the water in most wells is satisfactory for domestic use and irrigation. Locally at the southern end of the valley some contamination of the native waters is caused by the movement of salty wate

Water Supply Paper↗

USGS2009

Composition and variation of noise recorded at the Yellowknife Seismic Array, 1991-2007

We analyze seismic noise recorded on the 18 short-period, vertical component seismometers of the Yellowknife Seismic Array (YKA). YKA has an aperture of 23 km and is sited on cratonic lithosphere in an area with low cultural noise. These properties make it ideal for studying natural seismic noise at periods of 1-3 s. We calculated frequency-wave number spectra in this band for over 6,000 time windows that were extracted once per day for 17 years (1991-2007). Slowness analysis reveals a rich variety of seismic phases originating from distinct source regions: R g waves from the Great Slave Lake; L g waves from the Atlantic, Pacific, and Arctic Oceans; and teleseismic P waves from the north Pacific and equatorial mid-Atlantic regions. The surface wave energy is generated along coastlines, while the body wave energy is generated at least in part in deep-water, pelagic regions. Surface waves tend to dominate at the longer periods and, just as in earthquake seismograms, L g is the most prominent arrival. Although the periods we study are slightly shorter than the classic double-frequency microseismic band of 4-10 s, the noise at YKA has clear seasonal behavior that is consistent with the ocean wave climate in the Northern Hemisphere. The temporal variation of most of the noise sources can be well fit using just two Fourier components: yearly and biyearly terms that combine to give a fast rise in microseismic power from mid-June through mid-October, followed by a gradual decline. The exception is the R g energy from the Great Slave Lake, which shows a sharp drop in noise power over a 2-week period in November as the lake freezes. The L g noise from the east has a small but statistically significant positive slope, perhaps implying increased ocean wave activity in the North Atlantic over the last 17 years. Copyright 2009 by the American Geophysical Union.

Journal of Geophysical Research B: Solid Earth↗

USGS2017

Spatial variability of CO2 concentrations and biogeochemistry in the Lower Columbia River

Carbon dioxide (CO 2 ) emissions from rivers and other inland waters are thought to be a major component of regional and global carbon cycling. In large managed rivers such as the Columbia River, contemporary ecosystem changes such as damming, nutrient enrichment, and increased water residence times may lead to reduced CO 2 concentrations (and emissions) due to increased primary production, as has been shown in another large North American river (Upper Mississippi). In this work, spatial patterns of water quality, including dissolved CO 2 concentrations, were assessed in the Lower Columbia River (LCR) and major tributaries using underway measurements from a small research vessel during July 2016. We observed near-equilibrium CO 2 conditions and overall weak supersaturation of CO 2 in the main channel (average 133.8% saturation) and tributaries. We observed only weak correlations between CO 2 saturation, chlorophyll a fluorescence, and turbidity, thus not strongly supporting our hypothesis of primary productivity controls. In general, the LCR was clear (low turbidity, mean = 1.48 FNU) and had low chlorophyll fluorescence (mean = 0.177 RFU) during the sampling period. As a whole, the LCR was homogeneous with respect to biogeochemical conditions and showed low spatial variability at >100 km scales. Overall, we find that the LCR is likely a weak summertime source of CO 2 to the atmosphere, in line with findings from other altered rivers such as the Upper Mississippi.

Columbia River↗

USGS2001

Sediment quality in Burlington Harbor, Lake Champlain, U.S.A.

Surface samples and cores were collected in 1993 from the Burlington Harbor region of Lake Champlain. Sediment samples were analyzed for trace metals (cadmium, copper, lead, nickel, silver and zinc), simultaneously extracted metal/acid volatile sulfide (SEM-AVS), grain size, nutrients (carbon and nitrogen) and organic contaminants (polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)). The concentrations of cadmium, copper, silver and zinc from the partial sediment digestion of the surface samples correlated well with each other (r2 > 0.60) indicating that either a common process, or group of processes determined the sediment concentrations of these metals. In an analysis of the spatial distribution of the trace metals and PAHs, high surficial concentrations were present in the southern portion of the Harbor. The trace metal trend was strengthened when the concentrations were normalized by grain size. A sewage treatment plant outfall discharge was present in the southeastern portion of the Harbor at the time of this study and is the major source of trace metal and PAH contamination. Evaluation of sediment cores provides a proxy record of historical trace metal and organic inputs. The peak accumulation rate for copper, cadmium, lead, and zinc was in the late 1960s and the peak silver accumulation rate was later. The greatest accumulation of trace metals occurred in the late 1960s after discharges from the STP began. Subsequent declines in trace metal concentrations may be attributed to increased water and air regulations. The potential toxicity of trace metals and organic contaminants was predicted by comparing contaminant concentrations to benchmark concentrations and potential trace metal bioavailability was predicted with SEM-AVS results. Surface sample results indicate lead, silver, ???PAHs and ???PCBs are potentially toxic and/or bioavailable. These predictions were supported by studies of biota in the Burlington Harbor watershed. There is a clear trend of decreasing PAH and trace metal contaminant concentrations with distance from the STP outfall.Surface samples and cores were collected in 1993 from the Burlington Harbor region of Lake Champlain. Sediment samples were analyzed for trace metals (cadmium, copper, lead, nickel, silver and zinc), simultaneously extracted metal/acid volatile sulfide (SEM-AVS), grain size, nutrients (carbon and nitrogen) and organic contaminants (polycyclic aromatic hydrocarbons (PAHs) and polychlorinated biphenyls (PCBs)). The concentrations of cadmium, copper, silver and zinc from the partial sediment digestion of the surface samples correlated well with each other (r2>0.60) indicating that either a common process, or group of processes determined the sediment concentrations of these metals. In an analysis of the spatial distribution of the trace metals and PAHs, high surficial concentrations were present in the southern portion of the Harbor. The trace metal trend was strengthened when the concentrations were normalized by grain size. A sewage treatment plant outfall discharge was present in the southeastern portion of the Harbor at the time of this study and is the major source of trace metal and PAH contamination. Evaluation of sediment cores provides a proxy record of historical trace metal and organic inputs. The peak accumulation rate for copper, cadmium, lead, and zinc was in the late 1960s and the peak silver accumulation rate was later. The greatest accumulation of trace metals occurred in the late 1960s after discharges from the STP began. Subsequent declines in trace metal concentrations may be attributed to increased water and air regulations. The potential toxicity of trace metals and organic contaminants was predicted by comparing contaminant concentrations to benchmark concentrations and potential trace metal bioavailability was predicted with SEM-AVS results. Surface sample results indicate lead, silver, ??PAHs and ??PCBs are potentially toxic and/or bi

Water, Air, & Soil Pollution↗

USGS2024

Assessing and implementing the concept of Blue Economy in Laurentian Great Lakes fisheries: Lessons from coupled human and natural systems

Inland fisheries often receive little to no attention in global discussions about sustainable development. The consequences of overlooking inland fisheries in sustainability dialogues are increasingly problematic as fisheries stressors (e.g., overharvest, species invasion, climate change, habitat modification) intensify. Elevating the global profile of inland fisheries requires an approach for quantifying and clearly conveying the ecological, economic, and societal values of these systems. One such approach involves the Blue Economy, a multifaceted concept initially used to describe the intersection of marine conservation and sustainable use of marine resources for economic growth. Although conceptually powerful, the Blue Economy has rarely been applied to inland waters and fisheries. To address this knowledge gap, we conceptualized Laurentian Great Lakes fisheries from a Blue Economy perspective. In particular, we evaluated the utility of the coupled human and natural systems (CHANS) framework for characterizing the ecological, economic, and societal values of Laurentian Great Lakes fisheries and associated contributions to the Blue Economy (e.g., human livelihoods, food security, recreation, conservation, economic prosperity). There are numerous opportunities to leverage CHANS methods (e.g., metacoupling, telecoupling) and associated mathematical models to advance fisheries science, inform fisheries management, and ultimately move toward a Blue Economy in the Laurentian Great Lakes. To that end, we demonstrated applications of CHANS methods, discussed strategies for communicating with stakeholders, and provided insights for navigating challenges to developing a Blue Economy in the Laurentian Great Lakes—a model that could be used in the African Great Lakes and other large ecosystems in the world.

Laurentian Great Lakes↗

USGS2011

Spawning distribution of sockeye salmon in a glacially influenced watershed: The importance of glacial habitats

The spawning distribution of sockeye salmon Oncorhynchus nerka was compared between clear and glacially turbid habitats in Lake Clark, Alaska, with the use of radiotelemetry. Tracking of 241 adult sockeye salmon to 27 spawning locations revealed both essential habitats and the relationship between spawn timing and seasonal turbidity cycles. Sixty-six percent of radio-tagged sockeye salmon spawned in turbid waters (???5 nephelometric turbidity units) where visual observation was difficult. Spawning in turbid habitats coincided with seasonal temperature declines and associated declines in turbidity and suspended sediment concentration. Because spawn timing is heritable and influenced by temperature, the observed behavior suggests an adaptive response to glacier-fed habitats, as it would reduce embryonic exposure to the adverse effects of fine sediments. ?? Copyright by the American Fisheries Society 2007.

Transactions of the American Fisheries Society↗

USGS2018

Analysis of groundwater response to tidal fluctuations, Operable Unit 2, Area 8, Naval Base Kitsap, Keyport, Washington

Operable Unit 2, Area 8, at Naval Base Kitsap, Keyport is the site of a former chrome-plating facility that released metals (primarily chromium and cadmium), chlorinated volatile organic compounds, and petroleum compounds into the local environment. To ensure long-term protectiveness, as stipulated in the Fourth Five-Year Review for the site, Naval Facilities Engineering Command Northwest collaborated with the U.S. Environmental Protection Agency, the Washington State Department of Ecology, and the Suquamish Tribe, to collect data to monitor the contamination left in place and to ensure the site does not pose a risk to human health or the environment. To support these efforts, refined information was needed on the interaction of fresh groundwater with seawater in response to the up-to 13-ft tidal fluctuations at this nearshore site adjacent to Port Orchard Bay. The information was analyzed to meet the primary objective of this investigation, which was to determine the optimal time during the semi-diurnal and the neap-spring tidal cycles to sample groundwater for freshwater contaminants in Area 8 monitoring wells. Groundwater levels and specific conductance in five monitoring wells, along with marine water-levels (tidal levels) in Port Orchard Bay, were monitored every 15 minutes during a 3-week duration to determine how nearshore groundwater responds to tidal forcing. Time series data were collected from October 24, 2017, to November 16, 2017, a period that included neap and spring tides. Vertical profiles of specific conductance were also measured once in the screened interval of each well prior to instrument deployment to determine if a freshwater/saltwater interface was present in the well during that particular time. The vertical profiles of specific conductance were measured only one time during an ebbing tide at approximately the top, middle, and bottom of the saturated thickness within the screened interval of each well. The landward-most well, MW8-8, was completely freshwater, while one of the most seaward wells, MW8-9, was completely saline. A distinct saltwater interface was measured in the three other shallow wells (MW8-11, MW8-12, and MW8-14), with the topmost groundwater occurring fresh underlain by higher conductivity water. Lag times between minimum spring-tide level and minimum groundwater levels in wells ranged from about 2 to 4.5 hours in the less-than 20-ft deep wells screened across the water table, and was about 7 hours for the single 48-ft deep well screened below the water table. Those lag times were surprisingly long considering the wells are all located within 200-ft of the shoreline and the local geology is largely coarse-grained glacial outwash deposits. Various manmade subsurface features, such as slurry walls and backfilled excavations, likely influence and confuse the connectivity between seawater and groundwater. The specific-conductance time-series data showed clear evidence of substantial saltwater intrusion into the screened intervals of most shallow wells. Unexpectedly, the intrusion was associated with the neap part of the tidal cycle around November 13–16, when relatively low barometric pressure and high southerly winds led to the highest high and low tides measured during the monitoring period. The data consistently indicated that the groundwater had the lowest specific conductance (was least mixed with seawater) during the prior neap tides around October 30, the same period when the shallow groundwater levels were lowest. Although the specific conductance response is somewhat different between wells, the data do suggest that it is the heights of the actual high-high and low-low tides, regardless of whether or not they occur during the neap or spring part of the cycle, that allows seawater intrusion into the nearshore aquifer at Area 8. With all the data taken into consideration, the optimal time for sampling the shallow monitoring wells at Area 8 would be centered on a 2–5-hour period following the predicted low-low tide during neap tide, with due consideration of local atmospheric pressure and wind conditions that have the potential to generate tides that can be substantially higher than those predicted from lunar-solar tidal forces. The optimal time for sampling the deeper monitoring wells at Area 8 would be during the 6–8-hour period following a predicted low-low tide, also during the neap tide part of the tidal cycle. The specific time window to sample each well following a low tide can be found in table 5. Those periods are when groundwater in the wells is most fresh and least diluted by seawater intrusion. In addition to timing, consideration should be given to collecting undisturbed samples from the top of the screened interval (or top of the water table if below the top of the interval) to best characterize contaminant concentrations in freshwater. A downhole conductivity probe could be used to identify the saltwater interface, above which would be the ideal depth for sampling.

Washington↗

USGS2009

Inventory and Statistical Analysis of Sediment Data for Streams in Kentucky, 1950-2008

Suspended sediment is a constituent of water that is monitored because of concerns about accelerated erosion, nonpoint contamination of water resources, and degradation of aquatic environments. Understanding the availability of monitored sediment data for streams in Kentucky is critical to planning future modeling and monitoring efforts. In order to assess the availability of sediment data for Kentucky, long-term records were obtained from the National Water Information System (NWIS) of the U.S. Geological Survey (USGS). Suspended-sediment concentration (SSC), the parameter traditionally measured and reported by the USGS, was statistically compared to turbidity and total suspended solids (TSS), two parameters that are considered surrogate data. Coincident observations of SSC with either turbidity or TSS were available for 42 sites. In combination with instantaneous streamflow, turbidity and TSS both proved to be significant indicators of SSC when data from all sites were used. Because of the perceived link between sediment and nutrient abundance in streams, sediment-parameter data at these sites were correlated to total-nitrogen and total-phosphorus concentrations. A significant relation (p-value < 0.05) was found between monitored nutrient concentrations and coincident sediment abundance, although there were no clear linear relations. This compilation of data showed that SSC was monitored at 118 sites in Kentucky at some time between 1950 and 2008. As of March 2008, 9 sites were monitored for SSC in Kentucky (8 of which are new) down from a high of more than 60 SSC sites during the 1980s. Of these 118 SSC sites, 21 sites were also monitored for TSS; there are coincident records for both SSC and TSS at 6 sites. Forty-seven of these long-term water-quality sites were also monitored for turbidity; there are coincident records for SSC and turbidity at 42 sites, including all of those at which there are coincident data for TSS. The number of sites at which SSC and at least one other sediment parameter (TSS or turbidity) were monitored decreased from a high of 27 in 1987 to zero during the period 2001-2005.

Scientific Investigations Report↗

USGS2016

Seasonal flows of international British Columbia-Alaska rivers: The nonlinear influence of ocean-atmosphere circulation patterns

The northern portion of the Pacific coastal temperate rainforest (PCTR) is one of the least anthropogenically modified regions on earth and remains in many respects a frontier area to science. Rivers crossing the northern PCTR, which is also an international boundary region between British Columbia, Canada and Alaska, USA, deliver large freshwater and biogeochemical fluxes to the Gulf of Alaska and establish linkages between coastal and continental ecosystems. We evaluate interannual flow variability in three transboundary PCTR watersheds in response to El Niño-Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO), Arctic Oscillation (AO), and North Pacific Gyre Oscillation (NPGO). Historical hydroclimatic datasets from both Canada and the USA are analyzed using an up-to-date methodological suite accommodating both seasonally transient and highly nonlinear teleconnections. We find that streamflow teleconnections occur over particular seasonal windows reflecting the intersection of specific atmospheric and terrestrial hydrologic processes. The strongest signal is a snowmelt-driven flow timing shift resulting from ENSO- and PDO-associated temperature anomalies. Autumn rainfall runoff is also modulated by these climate modes, and a glacier-mediated teleconnection contributes to a late-summer ENSO-flow association. Teleconnections between AO and freshet flows reflect corresponding temperature and precipitation anomalies. A coherent NPGO signal is not clearly evident in streamflow. Linear and monotonically nonlinear teleconnections were widely identified, with less evidence for the parabolic effects that can play an important role elsewhere. The streamflow teleconnections did not vary greatly between hydrometric stations, presumably reflecting broad similarities in watershed characteristics. These results establish a regional foundation for both transboundary water management and studies of long-term hydroclimatic and environmental change.

Alaska, British Columbia↗

USGS2007

Using a coupled eco-hydrodynamic model to predict habitat for target species following dam removal

A habitat suitability index (HSI) model was developed for a water quality sensitive fish (Greater Redhorse) and macroinvertebrate (Plecoptera) species to determine the restoration success of the St. John Dam removal for the Sandusky River (Ohio). An ArcGIS?? model was created for pre- and post-dam removal scenarios. Inputs to the HSI model consist of substrate distributions from river surveys, and water level and velocity time series, outputs from a hydrodynamic model. The ArcGIS?? model predicted habitat suitability indices at 45 river cross-sections in the hydrodynamic model. The model was programmed to produce polygon layers, using graphical user interfaces that were displayed in the ArcGIS?? environment. The results of the model clearly show an increase of habitat suitability from pre- to post-dam removal periods and in the former reservoir. The change in suitability of the model is attributed mostly to the change in depth in the river following the dam removal for both the fish and invertebrate species. The results of the invertebrate model followed the same positive trend as species enumerations from the river basin. ?? 2007 Elsevier B.V. All rights reserved.

Ecological Engineering↗

USGS2011

Fire in the Mediterranean Basin

The Mediterranean Basin is a meeting point of three continents, Europe, Asia and Africa, and this is responsible for the great diversity of plants, animals and cultures that formed the cradle of Western civilization. It is considered one of the biodiversity hotspots (Myers et al . 2000) because of its high species richness and high proportion of endemisms (Thompson 2005). The total area showing a Mediterranean-type climate (MTC) is about 2.3 million km 2 , with transitions toward temperate forest ecosystems (in the European mountains) and toward arid ecosystems (in North Africa and the Near East). It is not only the largest of the five MTC regions, but also the most geographically complex (with more than 40 000 km of rough coast in different peninsulas and islands) as well as the most socio-economically, culturally and politically varied. Elevations range up to 3756 m in the east (the highest peak in the Taurus mountains, Turkey) and up to 4167 m in the west (the highest peak in the Atlas mountains, Morocco). There are many volcanoes in Italy and the Aegean Islands, with frequent minor eruptions and rare major explosions. The MTC region of the basin corresponds to a narrow rim around the Mediterranean Sea (Fig. 4.1), and includes: (1) in southern Europe, most of the Iberian peninsula (Portugal and Spain), south of France, most of Italy and Greece, the coast of Croatia, Montenegro and Albania; (2) in southwest Asia (the Near East), Cyprus, Lebanon, Palestine, Israel, most of Turkey, and the coast of Syria; and (3) in North Africa (the Magreb), the north of Tunisia, Algeria, Morocco and small coastal areas of Libya. It also includes all the islands in the Mediterranean Sea. In general terms, summers are hot and dry and winters are mild and relatively wet; winters may be cold in the interior areas with a continental climate influence (e.g. central Spain and central Turkey). The configuration of seas, peninsulas and islands, and the topographic complexity of the area, produce a great regional variety of weather and climate. Rainfall ranges from semi-arid conditions (<300 mm) up to over 2000 mm, and peaks in autumn and spring (in the west) and in autumn and winter (in the east). Because of the air masses' trajectories, the wettest parts of the basin are typically the western parts of the peninsulas (Iberian, Italian and Balkan peninsulas). There are also clear gradients from the colder and wetter northwest (southern France and northern Iberia) to the hotter and more arid south and southeast parts of the basin (North Africa and the Near East). The temperature-moderating effect of the sea is highest in the west (Atlantic coast) and lessens toward the east (water temperatures rise from west to east).

Book chapter↗

USGS2000

Delta subsidence in California: The sinking heart of the state

The Sacramento-San Joaquin River Delta of California once was a great tidal freshwater marsh blanketed by peat and peaty alluvium. Beginning in the late 1800s, levees were built along the stream channels, and the land thus protected from flooding was drained, cleared, and planted. Although the Delta is now an exceptionally rich agricultural area (over a $500 million crop value in 1993), its unique value is as a source of freshwater for the rest of the State. It is the heart of a massive north-to-south waterdelivery system. Much of this water is pumped southward for use in the San Joaquin Valley and elsewhere in central and southern California. The leveed tracts and islands help to protect water-export facilities in the southern Delta from saltwater intrusion by displacing water and maintaining favorable freshwater gradients. However, ongoing subsidence behind the levees reduces levee stability and, thus, threatens to degrade water quality in the massive north-to-south water-transfer system.

California↗

USGS2021

Disentangling stationary and dynamic estuarine fish habitat to inform conservation: Species-specific responses to physical habitat and water quality in San Francisco Estuary

Estuaries represent critical aquatic habitat that connects surface water distributed between Earth’s landmasses and oceans. They are dynamic transitional ecosystems, which provide important habitat for fishes and other aquatic organisms. Effective conservation of species inhabiting estuaries requires knowledge of the habitat features that drive their abundance and distribution. We sought to elucidate how stationary (i.e., wetlands, shoals, and channels) and dynamic (i.e., salinity, temperature, turbidity, and chlorophyll concentration) habitat features interact to drive distributions of individual fish species. The Pacific coast of the conterminous United States has over 400 estuaries of various types. The largest (historical surface area) is San Francisco Estuary, California. We conducted extensive field observations of fishes in the central San Francisco Estuary among stationary habitat types (i.e., wetland, shoal, and channel) over a 19-month period encompassing substantial variability in dynamic water quality conditions. Most of the species observed, especially native species of special management interest, were associated with tidal wetland habitat. Few species exhibited associations with water quality conditions driven by seasonal (temperature) or a combination of broad- and fine-scale ecosystem processes (salinity and turbidity). Our study provides (1) an empirical demonstration of how researchers can deal with the complex and dynamic expressions of habitat in estuarine systems to address urgent natural resource problems and (2) a clear demonstration of the urgent need for habitat restoration and its likely outcome in systems such as San Francisco Estuary. Restoration of suitable tidal wetland habitat on the West Coast of the United States is likely to be an effective conservation tool to support estuarine fishes given that over 90% of historical tidal wetland habitat in San Francisco Estuary and 85% of vegetated wetland habitat along the Pacific coast of the United States has been lost due to human modification.

California↗

USGS1965

Resource understanding: a challenge to aerial methods

Aerial survey methods are speeding acquisition of survey data needed to provide and manage the nation's resources. These methods have been applied to topographic mapping for a number of years and the record clearly shows their advantages in terms of cost and speed in contrast to the ground methods that have been historically employed. Limited use is now being made of aerial methods to assist cadastral surveys, in location, acquisition and development of National Parks, in mapping the geology of the nation, in locating and developing water resources, and in surveys of the oceans. It is the purpose of this paper to call attention to these uses and to encourage the scientific community to further refine aerial methods so that their use may be increased and the veracity of data improved.

Photogrammetric Engineering↗

USGS2012

Currents, drag, and sediment transport induced by a tsunami

We report observations of water surface elevation, currents, and suspended sediment concentration (SSC) from a 10-m deep site on the inner shelf in northern Monterey Bay during the arrival of the 2010 Chile tsunami. Velocity profiles were measured from 3.5 m above the bed (mab) to the surface at 2 min intervals, and from 0.1 to 0.7 mab at 1 Hz. SSC was determined from the acoustic backscatter of the near-bed profiler. The initial tsunami waves were directed cross shore and had a period of approximately 16 min. Maximum wave height was 1.1 m, and maximum current speed was 0.36 m/s. During the strongest onrush, near-bed velocities were clearly influenced by friction and a logarithmic boundary layer developed, extending more than 0.3 mab. We estimated friction velocity and bed shear stress from the logarithmic profiles. The logarithmic structure indicates that the flow can be characterized as quasi-steady at these times. At other phases of the tsunami waves, the magnitude of the acceleration term was significant in the near-bed momentum equation, indicating unsteady flow. The maximum tsunami-induced bed shear stress (0.4 N/m 2 ) exceeded the critical shear stress for the medium-grained sand on the seafloor. Cross-shore sediment flux was enhanced by the tsunami. Oscillations of water surface elevation and currents continued for several days. The oscillations were dominated by resonant frequencies, the most energetic of which was the fundamental longitudinal frequency of Monterey Bay. The maximum current speed (hourly-timescale) in 18 months of observations occurred four hours after the tsunami arrived.

California↗

USGS2011

Borehole geophysical investigation of a formerly used defense site, Machiasport, Maine, 2003-2006

The U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, collected borehole geophysical logs in 18 boreholes and interpreted the data along with logs from 19 additional boreholes as part of an ongoing, collaborative investigation at three environmental restoration sites in Machiasport, Maine. These sites, located on hilltops overlooking the seacoast, formerly were used for military defense. At each of the sites, chlorinated solvents, used as part of defense-site operations, have contaminated the fractured-rock aquifer. Borehole geophysical techniques and hydraulic methods were used to characterize bedrock lithology, fractures, and hydraulic properties. In addition, each geophysical method was evaluated for effectiveness for site characterization and for potential application for further aquifer characterization and (or) evaluation of remediation efforts. Results of borehole geophysical logging indicate the subsurface is highly fractured, metavolcanic, intrusive, metasedimentary bedrock. Selected geophysical logs were cross-plotted to assess correlations between rock properties. These plots included combinations of gamma, acoustic reflectivity, electromagnetic induction conductivity, normal resistivity, and single-point resistance. The combined use of acoustic televiewer (ATV) imaging and natural gamma logs proved to be effective for delineating rock types. Each of the rock units in the study area could be mapped in the boreholes, on the basis of the gamma and ATV reflectivity signatures. The gamma and mean ATV reflectivity data were used along with the other geophysical logs for an integrated interpretation, yielding a determination of quartz monzonite, rhyolite, metasedimentary units, or diabase/gabbro rock types. The interpretation of rock types on the basis of the geophysical logs compared well to drilling logs and geologic mapping. These results may be helpful for refining the geologic framework at depth. A stereoplot of all fractures intersecting the boreholes indicates numerous fractures, a high proportion of steeply dipping fractures, and considerable variation in fracture orientation. Low-dip-angle fractures associated with unloading and exfoliation are also present, especially at a depth of less than 100 feet below the top of casing. These sub-horizontal fractures help to connect the steeply dipping fractures, making this a highly connected fracture network. The high variability in the fracture orientations also increases the connectivity of the fracture network. A preliminary comparison of all fracture data from all the boreholes suggests fracturing decreases with depth. Because all the boreholes were not drilled to the same depth, however, there is a clear sampling bias. Hence, the deepest boreholes are analyzed separately for fracture density. For the deepest boreholes in the study, the intensity of fracturing does not decline significantly with depth. It is possible the fractures observed in these boreholes become progressively tighter or closed with depth, but this is difficult to verify with the borehole methods used in this investigation. The fact that there are more sealed fractures at depth (observed in optical televiewer logs in some of the boreholes) may indicate less opening of the sealed fractures, less water moving through the rock, and less weathering of the fracture infilling minerals. Although the fracture orientation remained fairly constant with depth, differences in the fracture patterns for the three restoration sites indicate the orientation of fractures varies across the study area. The fractures in boreholes on Miller Mountain predominantly strike northwest-southeast, and to a lesser degree they strike northeast. The fractures on or near the summit of Howard Mountain strike predominantly east-west and dip north and south, and the fractures near the Transmitter Site strike northeast-southwest and dip northwest and southeast. The fracture populations for the boreholes on or near the summit of Howard Mountain show more variation than at the other two sites. This variation may be related to the proximity of the fault, which is northeast of the summit of Howard Mountain. In a side-by-side comparison of stereoplots from selected boreholes, there was no clear correspondence between fracture orientation and proximity to the fault. There is, however, a difference in the total populations of fractures for the boreholes on or near the summit of Howard Mountain and the boreholes near the Transmitter Site. Further to the southwest and further away from the fault, the fractures at the Transmitter Site predominantly strike northeast-southwest and northwest-southeast.Heat-pulse flowmeter (HPFM) logging was used to identify transmissive fractures and to estimate the hydraulic properties along the boreholes. Ambient downflow was measured in 13 boreholes and ambient upflow was measured in 9 boreholes. In nine other bedrock boreholes, the HPFM did not detect measurable vertical flow. The observed direction of vertical flow in the boreholes generally was consistent with the conceptual flow model of downward movement in recharge locations and upward flow in discharge locations or at breaks in the slope of land surface. Under low-rate pumping or injection rates [0.25 to 1 gallon per minute (gal/min)], one to three inflow zones were identified in each borehole. Two limitations of HPFM methods are (1) the HPFM can only identify zones within 1.5 to 2 orders of magnitude of the most transmissive zone in each borehole, and (2) the HPFM cannot detect flow rates less than 0.010 + or - 0.005 gal/min, which corresponds to a transmissivity of about 1 foot squared per day (ft2/d). Consequently, the HPFM is considered an effective tool for identifying the most transmissive fractures in a borehole, down to its detection level. Transmissivities below that cut-off must be measured with another method, such as packer testing or fluid-replacement logging. Where sufficient water-level and flowmeter data were available, HPFM results were numerically modeled. For each borehole model, the fracture location and measured flow rates were specified, and the head and transmissivity of each fracture zone were adjusted until a model fit was achieved with the interpreted ambient and stressed flow profiles. The transmissivities calculated by this method are similar to the results of an open-hole slug test; with the added information from the flowmeter, however, the head and transmissivity of discrete zones also can be determined. The discrete-interval transmissivities ranged from 0.16 to 330 ft2/d. The flowmeter-derived open-hole transmissivity, which is the combined total of each of the transmissive zones, ranged from 1 to 511 ft2/d. The whole-well open-hole transmissivity values determined with HPFM methods were compared to the results of open-hole hydraulic tests. Despite the fact that the flowmeter-derived transmissivities consistently were lower than the estimates derived from open-hole hydraulic tests alone, the correlation was very strong (with a coefficient of determination, R2, of 0.9866), indicating the HPFM method provides a reasonable estimate of transmissivities for the most transmissive fractures in the borehole. Geologic framework, fracture characterization, and estimates of hydraulic properties were interpreted together to characterize the fracture network. The data and interpretation presented in this report should provide information useful for site investigators as the conceptual site groundwater flow model is refined. Collectively, the results and the conceptual site model are important for evaluating remediation options and planning or implementing the design of a well field and borehole completions that will be adequate for monitoring flow, remediation efforts, groundwater levels, and (or) water quality. Similar kinds of borehole geophysical logging (specifically the borehole imaging, gamma, fluid logs, and HPFM) should be conducted in any newly installed boreholes and integrated with interpretations of any nearby boreholes. If boreholes are installed close to existing or other new boreholes, cross-hole flowmeter surveys may be appropriate and may help characterize the aquifer properties and connections between the boreholes.

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