SEARCH · Search USGS

Results for “The R Journal”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 73 records · Page 4Linked to original sources

USGS2025

Decision support tools for brown pelican management in the northern Gulf of America (Gulf of Mexico)

Management plans with clear priorities can help to achieve brown pelican Pelecanus occidentalis conservation objectives in the northern Gulf of America (Gulf of Mexico). Efforts to establish clear priorities can be hindered by information gaps, especially those related to the uncertainty associated with changing conditions that influence brown pelican populations. We addressed these gaps by creating a model that uses island-specific conditions (e.g., geomorphology; predator-related conditions; brown pelican terrestrial nesting, roosting, and loafing habitats) to predict the nest count as a proxy for breeding pairs on the island. We used the model and 2000–2015 brown pelican nest count data to estimate if breeding pair targets that we identified or estimated for 10 U.S Fish and Wildlife Service Gulf Coast Biological Planning Units were met while accounting for uncertainty. Our results indicate that breeding pair targets were met in 7 of the 10 units by existing conditions. Our confidence in judging nest deficits tended to decrease from west to east because the model over-predicted total nests in the east Gulf Coast. Using an island from our data, we show how the model could be used to quantify the uncertainty of nest count outcomes under simulated changes in island conditions. The model indicated that the island's existing conditions most probably result in nests (probability = 0.51) and that increasing the area of nesting habitat (shrubs) could increase the probability of nests from 49% to 70%. Increasing shrub habitat in the model also increased nest count uncertainty by 60%, but this was due to a greater probability of larger nest counts. Our model suggests that nest count uncertainty could be reduced by improving data on island size, shrub area, and predator presence, depending on the unit and how isolated the island is from the mainland. These tools could help managers understand and incorporate the uncertainty associated with creating island conditions that are intended to help achieve brown pelican conservation objectives.

Alabama, Florida, Louisiana, Mississippi, Texas↗

USGS2014

Northern bobwhite predator avoidance behavior in response to varying types of threat

The flight behavior and cover use of northern bobwhite (Colinus virginianus) have been examined in several studies, but the current data lack quantitative measures of how bobwhites respond to natural threats. We examined aspects of bobwhite behavior in response to 4 threat categories: researcher, hunter, raptor, and mammal. We found that bobwhite flight distance is best predicted by threat type and covey size, and bobwhite flight speed is best predicted by threat type. Bobwhites flushed by the hunter threat and the raptor threat selected for significantly taller obstruction at landing sites than was randomly available, with average heights of 6.2cm taller (P=0.034), and 38.1cm taller (P<0.001), respectively. Raptor-flushed bobwhites also selected for significantly denser shrub cover (42.2%, P<0.001) and a lower angle of obstruction (70.4 degrees, P<0.001) at landing points than was randomly available. In the process of data collection, we also observed bobwhite roost locations have lower visual height obstruction (7.3cm, P=0.03), lower shrub intercept (10.1%, P=0.02), and greater angles of obstruction (18.5 degrees, P=0.005) than bobwhite diurnal locations; this may facilitate escape from nocturnal mammalian predators. Our results suggest that bobwhite escape strategies and cover use vary among threat types. These results support current management recommendations of creating a patchwork of vegetation covers for bobwhites but also suggest how a more complete understanding of bobwhite behavior would improve management and conservation efforts.

Journal of Wildlife Management↗

USGS2015

Modeling risk of pneumonia epizootics in bighorn sheep

Pneumonia epizootics are a major challenge for management of bighorn sheep ( Ovis canadensis ) affecting persistence of herds, satisfaction of stakeholders, and allocations of resources by management agencies. Risk factors associated with the disease are poorly understood, making pneumonia epizootics hard to predict; such epizootics are thus managed reactively rather than proactively. We developed a model for herds in Montana that identifies risk factors and addresses biological questions about risk. Using Bayesian logistic regression with repeated measures, we found that private land, weed control using domestic sheep or goats, pneumonia history, and herd density were positively associated with risk of pneumonia epizootics in 43 herds that experienced 22 epizootics out of 637 herd-years from 1979–2013. We defined an area of high risk for pathogen exposure as the area of each herd distribution plus a 14.5-km buffer from that boundary. Within this area, the odds of a pneumonia epizootic increased by >1.5 times per additional unit of private land (unit is the standardized % of private land where global  = 25.58% and SD = 14.53%). Odds were >3.3 times greater if domestic sheep or goats were used for weed control in a herd's area of high risk. If a herd or its neighbors within the area of high risk had a history of a pneumonia epizootic, odds of a subsequent pneumonia epizootic were >10 times greater. Risk greatly increased when herds were at high density, with nearly 15 times greater odds of a pneumonia epizootic compared to when herds were at low density. Odds of a pneumonia epizootic also appeared to decrease following increased spring precipitation (odds = 0.41 per unit increase, global  = 100.18% and SD = 26.97%). Risk was not associated with number of federal sheep and goat allotments, proximity to nearest herds of bighorn sheep, ratio of rams to ewes, percentage of average winter precipitation, or whether herds were of native versus mixed or reintroduced origin. We conclude that factors associated with risk of pneumonia epizootics are complex and may not always be from the most obvious sources. The ability to identify high-risk herds will help biologists and managers determine where to focus management efforts and the risk factors that most affect each herd, facilitating more effective, proactive management.

Journal of Wildlife Management↗

USGS2015

Insufficient sampling to identify species affected by turbine collisions

We compared the number of avian species detected and the sampling effort during fatality monitoring at 50 North American wind facilities. Facilities with short intervals between sampling events and high effort detected more species, but many facilities appeared undersampled. Species accumulation curves for 2 wind facilities studied for more than 1 year had yet to reach an asymptote. The monitoring effort that is typically invested is likely inadequate to identify all of the species killed by wind turbines. This may understate impacts for rare species of conservation concern that collide infrequently with turbines but suffer disproportionate consequences from those fatalities. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

Journal of Wildlife Management↗

USGS2015

Combining waterfowl and breeding bird survey data to estimate wood duck breeding population size in the Atlantic Flyway

We combined data from the Atlantic Flyway Breeding Waterfowl Survey (AFBWS) and the North American Breeding Bird Survey (BBS) to estimate the number of wood ducks ( Aix sponsa ) in the United States portion of the Atlantic Flyway from 1993 to 2013. The AFBWS is a plot-based survey that covers most of the northern and central portions of the Flyway; when analyzed with adjustments for survey time of day effects, these data can be used to estimate population size. The BBS provides an index of wood duck abundance along roadside routes. Although factors influencing change in BBS counts over time can be controlled in BBS analysis, BBS indices alone cannot be used to derive population size estimates. We used AFBWS data to scale BBS indices for Bird Conservation Regions (BCR), basing the scaling factors on the ratio of estimated AFBWS population sizes to regional BBS indices for portions of BCRs that were common to both surveys. We summed scaled BBS results for portions of the Flyway not covered by the AFBWS with AFBWS population estimates to estimate a mean yearly total of 1,295,875 (mean 95% CI: 1,013,940–1,727,922) wood ducks. Scaling factors varied among BCRs from 16.7 to 148.0; the mean scaling factor was 68.9 (mean 95% CI: 53.5–90.9). Flyway-wide, population estimates from the combined analysis were consistent with alternative estimates derived from harvest data, and also provide population estimates within states and BCRs. We recommend their use in harvest and habitat management within the Atlantic Flyway.

Connecticut, Delaware, Maryland, Massachusetts, Ne↗

USGS1997

Estimating the social value of geologic map information: A regulatory application

People frequently regard the landscape as part of a static system. The mountains and rivers that cross the landscape, and the bedrock that supports the surface, change little during the course of a lifetime. Society can alter the geologic history of an area and, in so doing, affect the occurrence and impact of environmental hazards. For example, changes in land use can induce changes in erosion, sedimentation, and ground-water supply. As the environmental system is changed by both natural processes and human activities, the system's capacity to respond to additional stresses also changes. Information such as geologic maps describes the physical world and is critical for identifying solutions to land use and environmental issues. In this paper, a method is developed for estimating the economic value of applying geologic map information to siting a waste disposal facility. An improvement in geologic map information is shown to have a net positive value to society. Such maps enable planners to make superior land management decisions.

Journal of Environmental Economics and Management↗

USGS1995

Remediation of uranium contaminated soils with bicarbonate extraction and microbial U(VI) reduction

A process for concentrating uranium from contaminated soils in which the uranium is first extracted with bicarbonate and then the extracted uranium is precipitated with U(VI)-reducing microorganisms was evaluated for a variety of uranuum-contaminated soils. Bicarbonate (100 mM) extracted 20–94% of the uranium that was extracted with nitric acid. The U(VI)-reducing microorganism, Desulfovibrio desulfuricans reduced the U(VI) to U(IV) in the bicarbonate extracts. In some instances unidentified dissolved extracted components, presumably organics, gave the extract a yellow color and inhibited U(VI) reduction and/or the precipitation of U(IV). Removal of the dissolved yellow material with the addition of hydrogen peroxide alleviated this inhibition. These results demonstrate that bicarbonate extraction of uranium from soil followed by microbial U(VI) reduction might be an effective mechanism for concentrating uranium from some contaminated soils.

Journal of Industrial Microbiology↗

USGS2015

A comparison of auditory brainstem responses across diving bird species

There is little biological data available for diving birds because many live in hard-to-study, remote habitats. Only one species of diving bird, the black-footed penguin ( Spheniscus demersus ), has been studied in respect to auditory capabilities (Wever et al., Proc Natl Acad Sci USA 63:676–680, 1969). We, therefore, measured in-air auditory threshold in ten species of diving birds, using the auditory brainstem response (ABR). The average audiogram obtained for each species followed the U-shape typical of birds and many other animals. All species tested shared a common region of the greatest sensitivity, from 1000 to 3000 Hz, although audiograms differed significantly across species. Thresholds of all duck species tested were more similar to each other than to the two non-duck species tested. The red-throated loon ( Gavia stellata ) and northern gannet ( Morus bassanus ) exhibited the highest thresholds while the lowest thresholds belonged to the duck species, specifically the lesser scaup ( Aythya affinis ) and ruddy duck ( Oxyura jamaicensis ). Vocalization parameters were also measured for each species, and showed that with the exception of the common eider ( Somateria mollisima ), the peak frequency, i.e., frequency at the greatest intensity, of all species' vocalizations measured here fell between 1000 and 3000 Hz, matching the bandwidth of the most sensitive hearing range.

Journal of Comparative Physiology A↗

USGS2006

A non-invasive technique to bleed incubating birds without trapping: A blood-sucking bug in a hollow egg

We describe a non-invasive technique to obtain blood samples from incubating birds without trapping and handling. A larval instar of the blood-sucking bug Dipetalogaster maximus (Heteroptera) was put in a hollowed artificial egg which was placed in a common tern Sterna hirundo) nest. A gauze-covered hole in the egg allowed the bug to draw blood from the brood patch of breeding adults. We successfully collected 68 blood samples of sufficient amount (median=187 ??l). The daily success rate was highest during the early breeding season and averaged 34% for all trials. We could not detect any visible response by the incubating bird to the sting of the bug. This technique allows for non-invasive blood collection from bird species of various sizes without disturbance. ?? Dt. Ornithologen-Gesellschaft e.V. 2005.

Journal of Ornithology↗

USGS2012

Designs and test results for three new rotational sensors

We discuss the designs and testing of three rotational seismometer prototypes developed at the Institute of Geophysics, Academy of Sciences (Prague, Czech Republic). Two of these designs consist of a liquid-filled toroidal tube with the liquid as the proof mass and providing damping; we tested the piezoelectric and pressure transduction versions of this torus. The third design is a wheel-shaped solid metal inertial sensor with capacitive sensing and magnetic damping. Our results from testing in Prague and at the Albuquerque Seismological Laboratory of the US Geological Survey of transfer function and cross-axis sensitivities are good enough to justify the refinement and subsequent testing of advanced prototypes. These refinements and new testing are well along.

Journal of Seismology↗

USGS2026

Suspended-sediment and phosphorus response in a fire-affected central Montana headwater catchment

Purpose Eutrophication and nuisance filamentous algal blooms (i.e. Cladophora ) are increasingly common occurrences throughout much of the western United States. Wildfire may be contributing to the frequency and magnitude of algal blooms through excess sediment and nutrient loading to streams and rivers. Our objective was to evaluate the effects the 2021 Woods Creek Fire had on sediment yields and phosphorus (total and bioavailable) partitioning in Camas Creek, a major tributary to the Smith River in Montana where Cladophora are now consistently reaching nuisance levels. Methods We collected water quality samples during snowmelt pulsing events as well as fixed interval sampling using an established U.S. Geological Survey stream gage instrumented with a continuous water quality sonde and an automatic peristaltic pump sampler. Water samples were processed for total phosphorus (TP), sediment-bound bioavailable phosphorus (S-BioP), soluble reactive phosphorus (SRP), and suspended sediment concentrations and were evaluated using linear regression and other nonparametric statistical tests. Continuous turbidity and streamflow were evaluated using hysteresis analysis to determine sediment sourcing and connectivity. Results We found that the Woods Creek Fire did not significantly influence TP and S-BioP in Camas Creek. However, there was a significant increase in SRP and turbidity in both postfire years (2022 and 2023). Hysteresis analysis of 91 delineated events indicated positive (clockwise) hysteresis was the dominant event pattern during the snowmelt period. This may indicate a lower hillslope to channel connectivity, with the major sediment supply originating from the channel and/or riparian areas. Conclusion Results from this study demonstrate the benefits of combining discrete water quality samples with high-frequency turbidity sensors to characterize postfire sediment and phosphorus dynamics. While a lack of postfire response in TP and S-BioP is contrary to many other studies, our findings highlight the role climate and catchment morphology play in attenuating a disturbance effect.

Montana↗

USGS1990

Storm-runoff generation in the Permanente Creek drainage basin, west central California - An example of flood-wave effects on runoff composition

Variations in the isotopic and chemical composition of storm runoff in the 10.6-km 2 Permanente Creek basin, Santa Clara County, California, indicate that changes in water composition lag behind changes in streamflow. This lag occurs even though field observations and rainfall-runoff modeling indicate that much of the storm runoff must be composed of "new" water running off impervious surfaces. The apparent incompatibility posed by the presence of "old" water and the direct and indirect evidence that surface runoff contributes substantially to storm runoff can be explained if initial rises in streamflow result from effects of flood waves. Flood waves composed of old channel water reach downstream locations ahead of the new water derived from impervious areas. By this mechanism, streamflow can rise rapidly in response to surface runoff and still be composed of large amounts of old water. Data collected in Permanente Creek indicate that flood waves can occur even in small basins, at least when those basins contain impervious surfaces.

California↗

USGS1990

Using 222Rn to examine groundwater/surface discharge interaction in the Rio Grande de Manati, Puerto Rico

222 Rn was used in the karst drainage basin of the Rio Grande de Manati in Puerto Rico to study groundwater/surface flow relationships. Locations of groundwater influx along two sections of the Rio Grande de Manati were identified. The 222 Rn measurements were used together with stream discharge data in a mass balance equation to quantify the groundwater inputs. The investigation established that both of the sections of the Rio Manati surveyed not only gained groundwater, but lost surface flow. It was calculated that the river gained about 1.2m 3 s −1 and lost 0.5m 3 s −1 to the aquifer between Ciales and United States Geological Survey gauging station 5. Between United States Geological Survey gauging stations 6 and 7, groundwater influx and stream flow loss occurred simultaneously with groundwater inputs equalling surface discharge losses of 4m 3 s −1 . The study successfully demonstrated the innovative application of 222 Rn as a geochemical tracer in examining groundwater/surface flow relationships in a karst system.

Puerto Rico↗

USGS1991

Geohydrologic, geochemical, and geologic controls on the occurrence of radon in ground water near Conifer, Colorado, USA

Integrated studies of geohydrology, geochemistry, and geology of crystalline rocks in the vicinity of Conifer, Colorado, reveal that radon concentrations do not correlate with variations in concentrations of other dissolved species. Concentrations of major ions show systematic variations along selected groundwater flowpaths, whereas radon concentrations are dependent on local geochemical and geologic phenomena (such as localized uranium concentration in the rock or the presence of faults or folds). When radon enters the flow system, concentrations do not increase along flowpaths because its decay rate is fast relative to groundwater flow rates. Radon-222 is not in secular equilibrium with 238 U and 226 Ra in the water. Therefore, most of the 238 U and 226 Ra necessary to support the waterborne 222 Rn must be present locally in the rock. High concentrations of dissolved radon are not found in zones of high transmissivity, and transmissivity is not correlated with rock type in the study area. A higher transmissivity can be indicative of higher water-volume to rock-surface-area ratios, which could effectively dilute 222 Rn entering the water and/or may indicate that emanated radon is carried away more rapidly. Water samples collected from individual wells over periods of several months showed significant fluctuations in the dissolved 222 Rn content. This fluctuation may be controlled by changes in the contributions of water-producing zones within the well resulting from seasonal fluctuations of the water table and/or pumping stresses.

Colorado↗

USGS1992

Groundwater flow, velocity, and age in a thick, fine-grained till unit in southeastern Wisconsin

Piezometer nests were installed at study sites in each of five north-south-trending end moraines of the late Pleistocene Oak Creek Formation in southeastern Wisconsin. The formation is composed primarily of a fine-grained glacial diamicton (till) and laterally continuous and discontinuous, coarse-grained lake and meltwater stream sediment. It overlies the Silurian dolomite aquifer, which is a source of drinking water to rural areas. The average vertical linear velocity and age of ground water in the Oak Creek Formation were estimated by three methods: Darcy's Law, environmental isotopes including 3 H, δ 2 H, δ 18 O, and 14 C (dissolved inorganic carbon), and solute transport modeling of 18 O. The F-1 and Metro sites in the Tinley moraine showed excellent agreement among the three estimates of vertical velocity and showed the lowest velocity values (0.3–0.5 cm year −1 downward), which suggests that diffusion controls vertical mass transport at these sites. Although the extrapolated maximum age of ground water is 35 000 years, ground water below 75 m at these sites is probably not older than 15 000 years, which is the maximum age of the formation. Estimates of velocity showed less agreement at study sites in the Lake Border moraine system to the east and ranged from about 0.2 to 20.7 cm year −1 ; maximum groundwater age could range from 213 to 6000 years. Higher and more variable velocities, perhaps owing to thinner and more heterogeneous sediment in these areas, suggest that diffusion may not dominate vertical mass transport. Heterogeneity and fractures may also promote the development of groundwater flow systems dominated by lateral flow. Because of the uncertainty about the nature of groundwater flow, velocity, and age in the formation east of the Tinley moraine, future waste-disposal activity in southeastern Wisconsin should be confined to the thickest parts of the Tinley moraine near the present F-1 and Metro sites.

Journal of Hydrology↗

USGS1992

Identification of persistent anionic surfactant-derived chemicals in sewage effluent and groundwater

Preparative isolation and fractionation procedures coupled with spectrometric analyses were used to identify surfactant-derived contaminants in sewage effluent and sewage-contaminated groundwater from a site located on Cape Cod, Massachusetts. Anionic surfactants and their biodegradation intermediates were isolated from field samples by ion exchange and fractionated by solvent extraction and adsorption chromatography. Fractions were analyzed by 13 C nuclear magnetic resonance spectrometry and gas chromatography-mass spectrometry. Carboxylated residues of alkylphenol polyethoxylate surfactants were detected in sewage effluent and contaminated groundwater. Linear alkylbenzenesulfonates (LAS) were identified in sewage effluent and groundwater. Groundwater LAS composition suggested preferential removal of select isomers and homologs due to processes of biodegradation and partitioning. Tetralin and indane sulfonates (DATS), alicyclic analogs of LAS, were also identified in field samples. Although DATS are a minor portion of LAS formulations, equivalent concentrations of LAS and DATS in groundwater suggested persistence of alicyclic contaminant structures over those of linear structure. Sulfophenyl-carboxylated (SPC) LAS biodegradation intermediates were determined in sewage effluent and groundwater. Homolog distributions suggested that SPC containing 3–10 alkyl-chain carbons persist during infiltration and groundwater transport. Surfactant-derived residues detected in well F 300-50 groundwater have a minimum residence time in the range of 2.7–4.6 yr. LAS detected in groundwater at 500 m from infiltration has been stable over an estimated 50–500 half lives.

Journal of Contaminant Hydrology↗

USGS1992

The aqueous photolysis of α-pinene in solution with humic acid

Terpenes are produced abundantly by environmental processes but are found in very low concentrations in natural waters. Aqueous photolysis of solutions containing α-pinene, a representative terpene, in the presence of humic acid resulted in degradation of the pinene. Comparison of this reaction to photolysis of α-pinene in the presence of methylene blue leads to the conclusion that the reactive pathway for the abiotic degradation of α-pinene is due to reaction with singlet oxygen produced by irradiation of the humic material. The initial product of single oxygen and α-pinene is a hydroperoxide. Since humic materials are prevalent in most natural waters, this mechanism of photodecomposition for α-pinene probably also applies to other terpenes in surface waters and may be reasonably considered to contribute to their low environmental concentration.

Journal of Contaminant Hydrology↗

USGS1990

Geology and geochemistry of epithermal precious metal vein systems in the intra-oceanic arcs of Palau and Yap, western Pacific

The Palau and Yap arcs are part of an intra-oceanic island-arc-trench system which separates the Pacific and Philippine plates in the western Pacific Ocean. The 350-km-long Palau arc consists of over 200 islands while the 400-km-long Yap arc located to the north has only four major islands exposed. Four of the largest islands in Palau are composed primarily of early Eocene to mid-Miocene volcanic rocks and the four islands comprising Yap contain only Miocene volcanic rocks. Basalt and basaltic andesites of the Babelthuap Formation are the oldest volcanic rocks in Palau and are characterized by high MgO, Ni and Cr and low TiO 2 and have a boninitic affinity. They form the central and southeastern parts of Babelthuap Island. Oligocene arc tholeiite flows having an age of 34–35.5 Ma comprise most of the three smaller volcanic islands in Palau and the western part of Babelthuap. The youngest volcanic rocks are dacitic intrusions having an age of 22.7–23.2 Ma. The Yap arc is unusual in that metamorphic rocks up to amphibolite grade form most of the islands. These are underlain by a melange composed of igneous and volcanic clasts as well as clasts from a dismembered copper-gold skarn deposit. Miocene volcanic rocks consisting of flows and volcaniclastic deposits overlie the melange and metamorphic complex.

Journal of Geochemical Exploration↗