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At least 73 records · Page 4Linked to original sources
USGS2017

Emerging fungal pathogen Ophidiomyces ophiodiicola in wild European snakes

Snake fungal disease (SFD) is an emerging disease of conservation concern in eastern North America. Ophidiomyces ophiodiicola , the causative agent of SFD, has been isolated from over 30 species of wild snakes from six families in North America. Whilst O. ophiodiicola has been isolated from captive snakes outside North America, the pathogen has not been reported from wild snakes elsewhere. We screened 33 carcasses and 303 moulted skins from wild snakes collected from 2010–2016 in Great Britain and the Czech Republic for the presence of macroscopic skin lesions and O. ophiodiicola . The fungus was detected using real-time PCR in 26 (8.6%) specimens across the period of collection. Follow up culture and histopathologic analyses confirmed that both O. ophiodiicola and SFD occur in wild European snakes. Although skin lesions were mild in most cases, in some snakes they were severe and were considered likely to have contributed to mortality. Culture characterisations demonstrated that European isolates grew more slowly than those from the United States, and phylogenetic analyses indicated that isolates from European wild snakes reside in a clade distinct from the North American isolates examined. These genetic and phenotypic differences indicate that the European isolates represent novel strains of O. ophiodiicola . Further work is required to understand the individual and population level impact of this pathogen in Europe.

Scientific Reports↗
USGS2024

Adaptive resource management: Achieving functional eradication of invasive snakes to benefit avian conservation

Natural resource management often co-occurs with considerable uncertainty. One approach to mitigating uncertainty is through adaptive resource management (ARM), a specialized form of structured decision-making that modifies management decisions or actions through monitoring and implementation. Here, we present a case study on the attempted eradication of an invasive brown treesnake ( Boiga irregularis ) in a 5-ha enclosure on Guam with uncertainty in approach. We applied an ARM process across three field phases of snake removal and evaluated whether (1) eradication was achievable and (2) eradication was necessary to achieve an avian response. Field phases included the application of aerial toxic baits, toxicant baiting large mouse and birds, trapping with live mouse and bird lures and hand capture. We found that each removal technique improved control by either removing many individuals or targeting a subset of individuals that resisted prior control approaches. Although the effort did not result in eradication, the evaluation of identified indicators allowed for timely adjustments to removal using the ARM process. The snake removal efforts yielded an avian response in the treatment area after integrating live birds as snake lures, suggesting functional eradication of snakes may be possible. We also, however, observed a release of invasive rodents following snake control, with birds being more sensitive to the presence of snakes than rodents. Synthesis and applications . We suggest that using adaptive resource management to evaluate each phase of action in relation to established goals allowed us to measure outcomes and was successful in eliminating uncertainty in the application of control tools for wildlife conservation. We were able to create a documented and successful approach towards removing snakes inside a snake-exclusion barrier by following the ARM process.

Journal of Applied Ecology↗
USGS1993

Population structure, body mass, activity, and orientation of an aquatic snake ( Seminatrix pygaea ) during a drought

The snout – vent length, tail length, weight, sex, activity, and orientation of a population of swamp snakes ( Seminatrix pygaea ) in north – central Florida were recorded from 1985 through 1990. A small temporary pond was monitored for 1343 days, using a drift fence – pitfall trap sampling regime. I captured 123 different snakes, plus 45 recaptures. Juveniles comprised 89% of the snakes at the pond. Females were generally longer and weighed more than males, although regression analysis showed no differences between the sexes in the relationship of length versus wet body mass. Males had longer tails than females. The sex ratio of snakes with a snout – vent length of more than 150 mm was 1:1. Activity occurred throughout the year but peaked during summer. Hydroperiod and weather conditions did not appear to influence snake activity. During the latter years of the study, a regional drought that began in the mid-1980s became quite severe. However, drought had little direct effect on overland migration or body condition but caused snakes to leave or to shorten the amount of time they spent within the pond basin. Snakes immigrated and emigrated nonrandomly; orientation was directed to and from the nearest large water body. Certain temporary ponds may comprise developmental habitat for Seminatrix pygaea . The dynamic wet – dry climatic cycles in southeastern North America may lead to the formation of metapopulations in some aquatic snakes.

Canadian Journal of Zoology↗
USGS2024

Ecology of an insular snake assemblage in coastal Maine

Wildlife populations at the peripheries of their distributions or on isolated islands often display divergent and poorly understood morphological or life-history characteristics compared to core populations. We used a capture–mark–recapture dataset collected over a 19-year period to characterize a northern, insular snake assemblage in coastal Maine. We captured 611 individual snakes of 4 species ( Thamnophis sirtalis [Common Gartersnake; n = 221 individuals], Diadophis punctatus [Ring-necked Snake; n = 258 individuals], Storeria occipitomaculata [Red-bellied Snake; n = 81 individuals], and Opheodrys vernalis [Smooth Greensnake; n = 51 individuals]) and recorded 104 recaptures. We provide some of the first data on growth, reproduction, and movement for these species in northern New England, expanding our understanding of insular and northern snake populations. Specifically, we found that Common Gartersnakes fed primarily on earthworms and amphibians and grew rapidly, in accordance with mainland populations, but exhibited smaller size at maturity and average litter sizes. We captured an unusually large number of Ring-necked Snakes, which are uncommon elsewhere in Maine, and recorded an apparently localized nesting area for this species, as well as relatively long-distance (230–300 m) dispersal away from that location. In our population, female Ring-necked Snakes mature in their third year, and this species exhibits weak sexual size dimorphism (SSD). We found the ecology of Red-bellied Snakes at our study site to be similar to other populations, with individuals feeding on slugs, and females maturing in their second year; however, our population exhibited the strongest pattern of (female-biased) SSD. Smooth Greensnakes were restricted to the most extensive old-field habitat within our study site and fed on a variety of arthropods. We confirmed communal nesting and short incubation period for this species and provide among the first data on growth and longevity (at least 7 years) of this relatively understudied species.

Maine↗
USGS1987

Solute geochemistry of the Snake River plain regional aquifer system, Idaho and eastern Oregon

Three geochemical methods were used to determine chemical reactions that control solute concentrations in the Snake River Plain regional aquifer system: (1) Calculation of a regional solute balance within the aquifer and of mineralogy in the aquifer framework to identify solute reactions, (2) comparison of thermodynamic mineral saturation indices with plausible solute reactions, and (3) comparison of stable-isotope ratios of the ground water with those in the aquifer framework. The geothermal ground-water system underlying the main aquifer system was examined by calculating thermodynamic mineral saturation indices, stable-isotope ratios of geothermal water, geothermometry, and radiocarbon dating. Water budgets, hydrologic arguments, and isotopic analyses for the eastern Snake River Plain aquifer system demonstrate that most, if not all, water is of local meteoric and not juvenile or formation origin. Solute-balance, isotopic, mineralogic, and thermodynamic arguments suggest that about 20 percent of the solutes are derived from reactions with rocks forming the aquifer framework. Solute reactions indicate that calcite and silica are precipitated in the aquifer. Mineralogic evidence and thermodynamic arguments suggest that olivine, pyroxene, pyrite, and anhydrite are being dissolved and plagioclase is being weathered. Large amounts of sodium and chloride, relative to their concentration in the igneous rock, are being removed from the aquifer. Release of fluids from inclusions in the igneous rocks, and initial flushing of grain boundaries and pores of detrital marine sediments in interbeds are believed to be the source of the sodium chloride. Identification and quantification of reactions controlling solute concentrations in ground water in the eastern plain indicate that the aquifer is not a large mixing vessel that simply stores and transmits water and solutes but is undergoing diagenesis and is both a source and sink for solutes. Evaluation of solute concentrations and stable-isotope ratios of hydrogen, oxygen, carbon, and sulfur along ground-water flowpaths that transect irrigated areas suggests that irrigation water may have altered solute concentrations and isotope ratios in the eastern Snake River Plain aquifer system. The changes, however, have been small, owing to similarity of solute concentrations in applied irrigation water and in native ground water and rapid movement and large dispersivity of the aquifer. Reactions controlling solutes in the western Snake River basin are believed to be similar to those in the eastern basin but, because of different hydrologic conditions, a definitive analysis could not be made. The regional geothermal system that underlies the Snake River Plain contains total dissolved solids similar to those in the overlying Snake River Plain aquifer system but contains higher concentrations of sodium, bicarbonate, silica, fluoride, sulfate, chloride, arsenic, boron, and lithium, and lower concentrations of calcium, magnesium, and hydrogen. These solutes are believed to be derived from reactions similar to those in the Snake River Plain aquifer system, except that ion exchange may be a significant mechanism controlling solute concentrations in the geothermal system. Geothermometry calculations of selected ground-water samples from known geothermal areas throughout the basin suggest that the geothermal system is large in areal extent but has relatively low temperatures. Approximately half of the silica-quartz calculated water temperatures are greater than 90 degrees Celsius. Radiocarbon dating of geothermal water in the Salmon Falls and Bruneau-Grand View areas in the south-central part of the Snake River basin suggests that residence time of the geothermal water is about 17,700 years.

Idaho, Oregon↗
USGS2012

Grain-size distribution and selected major and trace element concentrations in bed-sediment cores from the Lower Granite Reservoir and Snake and Clearwater Rivers, eastern Washington and northern Idaho, 2010

Lower Granite Dam impounds the Snake and Clearwater Rivers in eastern Washington and northern Idaho, forming Lower Granite Reservoir. Since 1975, the U.S. Army Corps of Engineers has dredged sediment from the Lower Granite Reservoir and the Snake and Clearwater Rivers in eastern Washington and northern Idaho to keep navigation channels clear and to maintain the flow capacity. In recent years, other Federal agencies, Native American governments, and special interest groups have questioned the negative effects that dredging might have on threatened or endangered species. To help address these concerns, the U.S. Geological Survey, in cooperation with the U.S. Army Corps of Engineers, collected and analyzed bed-sediment core samples (hereinafter cores) in Lower Granite Reservoir and impounded or backwater affected parts of the Snake and Clearwater Rivers. Cores were collected during the spring and fall of 2010 from submerged sampling locations in the Lower Granite Reservoir, and Snake and Clearwater Rivers. A total of 69 cores were collected by using one or more of the following corers: piston, gravity, vibrating, or box. From these 69 cores, 185 subsamples were removed and submitted for grain size analyses, 50 of which were surficial-sediment subsamples. Fifty subsamples were also submitted for major and trace elemental analyses. Surficial-sediment subsamples from cores collected from sites at the lower end of the reservoir near the dam, where stream velocities are lower, generally had the largest percentages of silt and clay (more than 80 percent). Conversely, all of the surficial-sediment subsamples collected from sites in the Snake River had less than 20 percent silt and clay. Most of the surficial-sediment subsamples collected from sites in the Clearwater River contained less than 40 percent silt and clay. Surficial-sediment subsamples collected near midchannel at the confluence generally had more silt and clay than most surficial-sediment subsamples collected from sites on the Snake and Clearwater Rivers or even sites further downstream in Lower Granite Reservoir. Two cores collected at the confluence and all three cores collected on the Clearwater River immediately upstream from the confluence were extracted from a thick sediment deposit as shown by the cross section generated from the bathymetric surveys. The thick sediment deposits at the confluence and on the Clearwater River may be associated with floods in 1996 and 1997 on the Clearwater River. Fifty subsamples from 15 cores were analyzed for major and trace elements. Concentrations of trace elements were low, with respect to sediment quality guidelines, in most cores. Typically, major and trace element concentrations were lower in the subsamples collected from the Snake River compared to those collected from the Clearwater River, the confluence of the Snake and Clearwater Rivers, and Lower Granite Reservoir. Generally, lower concentrations of major and trace elements were associated with coarser sediments (larger than 0.0625 millimeter) and higher concentrations of major and trace elements were associated with finer sediments (smaller than 0.0625 millimeter).

Idaho, Washington↗
USGS2014

Hydrology and numerical simulation of groundwater movement and heat transport in Snake Valley and surrounding areas, Juab, Miller, and Beaver Counties, Utah, and White Pine and Lincoln Counties, Nevada

Snake Valley and surrounding areas, along the Utah-Nevada state border, are part of the Great Basin carbonate and alluvial aquifer system. The groundwater system in the study area consists of water in unconsolidated deposits in basins and water in consolidated rock underlying the basins and in the adjacent mountain blocks. Most recharge occurs from precipitation on the mountain blocks and most discharge occurs from the lower altitude basin-fill deposits mainly as evapotranspiration, springflow, and well withdrawals. The Snake Valley area regional groundwater system was simulated using a three-dimensional model incorporating both groundwater flow and heat transport. The model was constructed with MODFLOW-2000, a version of the U.S. Geological Survey’s groundwater flow model, and MT3DMS, a transport model that simulates advection, dispersion, and chemical reactions of solutes or heat in groundwater systems. Observations of groundwater discharge by evapotranspiration, springflow, mountain stream base flow, and well withdrawals; groundwater-level altitudes; and groundwater temperatures were used to calibrate the model. Parameter values estimated by regression analyses were reasonable and within the range of expected values. This study represents one of the first regional modeling efforts to include calibration to groundwater temperature data. The inclusion of temperature observations reduced parameter uncertainty, in some cases quite significantly, over using just water-level altitude and discharge observations. Of the 39 parameters used to simulate horizontal hydraulic conductivity, uncertainty on 11 of these parameters was reduced to one order of magnitude or less. Other significant reductions in parameter uncertainty occurred in parameters representing the vertical anisotropy ratio, drain and river conductance, recharge rates, and well withdrawal rates. The model provides a good representation of the groundwater system. Simulated water-level altitudes range over almost 2,000 meters (m); 98 percent of the simulated values of water-level altitudes in wells are within 30 m of observed water-level altitudes, and 58 percent of them are within 12 m. Nineteen of 20 simulated discharges are within 30 percent of observed discharge. Eighty-one percent of the simulated values of groundwater temperatures in wells are within 2 degrees Celsius (°C) of the observed values, and 55 percent of them are within 0.75 °C. The numerical model represents a more robust quantification of groundwater budget components than previous studies because the model integrates all components of the groundwater budget. The model also incorporates new data including (1) a detailed hydrogeologic framework, and (2) more observations, including several new water-level altitudes throughout the study area, several new measurements of spring discharge within Snake Valley which had not previously been monitored, and groundwater temperature data. Uncertainty in the estimates of subsurface flow are less than those of previous studies because the model balanced recharge and discharge across the entire simulated area, not just in each hydrographic area, and because of the large dataset of observations (water-level altitudes, discharge, and temperatures) used to calibrate the model and the resulting transmissivity distribution. Groundwater recharge from precipitation and unconsumed irrigation in Snake Valley is 160,000 acre-feet per year (acre-ft/yr), which is within the range of previous estimates. Subsurface inflow from southern Spring Valley to southern Snake Valley is 13,000 acre-ft/yr and is within the range of previous estimates; subsurface inflow from Spring Valley to Snake Valley north of the Snake Range, however, is only 2,200 acre-ft/yr, which is much less than has been previously estimated. Groundwater discharge from groundwater evapotranspiration and springs is 100,000 acre-ft/yr, and discharge to mountain streams is 3,300 acre-ft/yr; these are within the range of previous estimates. Current well withdrawals are 28,000 acre-ft/yr. Subsurface outflow from Snake Valley moves into Pine Valley (2,000 acre-ft/yr), Wah Wah Valley (23 acre-ft/yr), Tule Valley (33,000 acre-ft/yr), Fish Springs Flat (790 acre-ft/yr), and outside of the study area towards Great Salt Lake Desert (8,400 acre-ft/yr); these outflows, totaling about 44,000 acre-ft/yr, are within the range of previous estimates. The subsurface flow amounts indicate the degree of connectivity between hydrographic areas within the study area. The simulated transmissivity and locations of natural discharge, however, provide a better estimate of the effect of groundwater withdrawals on groundwater resources than does the amount and direction of subsurface flow between hydrographic areas. The distribution of simulated transmissivity throughout the study area includes many areas of high transmissivity within and between hydrographic areas. Increased well withdrawals within these high transmissivity areas will likely affect a large part of the study area, resulting in declining groundwater levels, as well as leading to a decrease in natural discharge to springs and evapotranspiration.

Nevada, Utah↗
USGS2000

Probability of detecting atrazine/desethyl-atrazine and elevated concentrations of nitrate plus nitrate as nitrogen in ground water in the Idaho part of the western Snake River Plain

As ground water continues to provide an ever-growing proportion of Idaho?s drinking water, concerns about the quality of that resource are increasing. Pesticides (most commonly, atrazine/desethyl-atrazine, hereafter referred to as atrazine) and nitrite plus nitrate as nitrogen (hereafter referred to as nitrate) have been detected in many aquifers in the State. To provide a sound hydrogeologic basis for atrazine and nitrate management in southern Idaho—the largest region of land and water use in the State—the U.S. Geological Survey produced maps showing the probability of detecting these contaminants in ground water in the upper Snake River Basin (published in a 1998 report) and the western Snake River Plain (published in this report). The atrazine probability map for the western Snake River Plain was constructed by overlaying ground-water quality data with hydrogeologic and anthropogenic data in a geographic information system (GIS). A data set was produced in which each well had corresponding information on land use, geology, precipitation, soil characteristics, regional depth to ground water, well depth, water level, and atrazine use. These data were analyzed by logistic regression using a statistical software package. Several preliminary multivariate models were developed and those that best predicted the detection of atrazine were selected. The multivariate models then were entered into a GIS and the probability maps were produced. Land use, precipitation, soil hydrologic group, and well depth were significantly correlated with atrazine detections in the western Snake River Plain. These variables also were important in the 1998 probability study of the upper Snake River Basin. The effectiveness of the probability models for atrazine might be improved if more detailed data were available for atrazine application. A preliminary atrazine probability map for the entire Snake River Plain in Idaho, based on a data set representing that region, also was produced. In areas where this map overlaps the 1998 map of the upper Snake River Basin, the two maps show broadly similar probabilities of detecting atrazine. Logistic regression also was used to develop a preliminary statistical model that predicts the probability of detecting elevated nitrate in the western Snake River Plain. A nitrate probability map was produced from this model. Results showed that elevated nitrate concentrations were correlated with land use, soil organic content, well depth, and water level. Detailed information on nitrate input, specifically fertilizer application, might have improved the effectiveness of this model.

Idaho↗
USGS1997

Assessment of nutrients, suspended sediment, and pesticides in surface water of the upper Snake River basin, Idaho and western Wyoming, water years 1991-95

A water-quality investigation of the upper Snake River Basin began in 1991 as part of the U.S. Geological Survey's National Water- Quality Assessment Program. As part of the investigation, intensive monitoring was conducted during water years 1993 through 1995 to assess surface-water quality in the basin. Sampling and analysis focused on nutrients, suspended sediments, and pesticides because of nationwide interest in these constituents. Concentrations of nutrients and suspended sediment in water samples from 19 sites in the upper Snake River Basin, including nine on the main stem, were assessed. In general, concentrations of nutrients and suspended sediment were smaller in water from the 11 sites upstream from American Falls Reservoir than in water from the 8 sites downstream from the reservoir where effects from land-use activities are most pronounced. Median concentrations of dissolved nitrite plus nitrate as nitrogen at the 19 sites ranged from less than 0.05 to 1.60 milligrams per liter; total phosphorus as phosphorus, less than 0.01 to 0.11 milligrams per liter; and suspended sediment, 4 to 72 milligrams per liter. Concentrations of nutrients and suspended sediment in the main stem of the Snake River, in general, increased downstream. The largest concentrations in the main stem were in the middle reach of the Snake River between Milner Dam and the outlet of the upper Snake River Basin at King Hill. Significant differences (p<0.05) in nutrient and suspended sediment concentrations were noted among groups of sites categorized by the quantity of agricultural land in their upstream drainage basins. Water samples collected from sites in drainage basins where agricultural land constituted less than 10 percent of the land use contained significantly smaller concentrations of nutrients and suspended sediment than samples from sites in drainage basins where agricultural land constituted more than 10 percent of the land use. Significant differences in nutrient and suspended sediment concentrations were inconsistent among groups representing 10 to 19 percent, 20 to 29 percent, and greater than 29 percent agricultural land use. Seasonal concentrations of dissolved nitrite plus nitrate, total phosphorus, and suspended sediment were significantly different among most of the agricultural land-use groups. Concentrations of dissolved nitrite plus nitrate were largest during the nonirrigation season, October through March. Concentrations of total phosphorus and suspended sediment, in general, were largest during high streamflow, April through June. Nutrient and suspended sediment inputs to the middle Snake reach were from a variety of sources. During water year 1995, springs were the primary source of water and total nitrogen to the river and accounted for 66 and 60 percent of the total input, respectively. Isotope and water-table information indicated that the springs derived most of their nitrogen from agricultural activities along the margins of the Snake River. Aquacultural effluent was a major source of ammonia (82 percent), organic nitrogen (30 percent), and total phosphorus (35 percent). Tributary streams were a major source of organic nitrogen (28 percent) and suspended sediment (58 percent). In proportion to its discharge (less than 1 percent), the Twin Falls sewage-treatment plant was a major source of total phosphorus (13 percent). A comparison of discharge and loading in water year 1995 with estimates of instream transport showed a good correlation (relative difference of less than 15 percent) for discharge, total organic nitrogen, dissolved nitrite plus nitrate, total nitrogen, and total phosphorus. Estimates of dissolved ammonia and suspended sediment loads correlated poorly with instream transport; relative differences were about 79 and 61 percent, respectively. The pesticides EPTC, atrazine, desethylatrazine, metolachlor, and alachlor were the most commonly detected in the upper Snake River Basin and accounted for about 75 percent of all pesticide detections. All pesticides detected were at concentrations less than 1 microgram per liter and below water-quality criteria established by the U.S. Environmental Protection Agency. In samples collected from two small agriculturally dominated tributary basins, the largest number and concentrations of pesticides were detected in May and June following early growing season applications. At one of the sites, the pesticide atrazine and its metabolite desethylatrazine were detected throughout the year. On the basis of 37 samples collected basinwide in May and June 1994, total annual subbasin applications and instantaneous instream fluxes of EPTC and atrazine showed logarithmic relations with coefficients of determination (R2 values) of 0.55 and 0.62, respectively. At the time of sampling, the median daily flux of EPTC was about 0.0001 percent of the annual quantity applied, whereas the median daily flux of atrazine was between 0.001 and 0.01 percent.

Idaho;Wyoming↗
USGS1998

Organochlorine compounds and trace elements in fish tissue and bed sediments in the lower Snake River basin, Idaho and Oregon

Fish-tissue and bed-sediment samples were collected to determine the occurrence and distribution of organochlorine compounds and trace elements in the lower Snake River Basin. Whole-body composite samples of suckers and carp from seven sites were analyzed for organochlorine compounds; liver samples were analyzed for trace elements. Fillets from selected sportfish were analyzed for organochlorine compounds and trace elements. Bed-sediment samples from three sites were analyzed for organochlorine compounds and trace elements. Twelve different organochlorine compounds were detected in 14 fish-tissue samples. All fish-tissue samples contained DDT or its metabolites. Concentrations of total DDT ranged from 11 micrograms per kilogram wet weight in fillets of yellow perch from C.J. Strike Reservoir to 3,633 micrograms per kilogram wet weight in a whole-body sample of carp from Brownlee Reservoir at Burnt River. Total DDT concentrations in whole-body samples of sucker and carp from the Snake River at C.J. Strike Reservoir, Snake River at Swan Falls, Snake River at Nyssa, and Brownlee Reservoir at Burnt River exceeded criteria established for the protection of fish-eating wildlife. Total PCB concentrations in a whole-body sample of carp from Brownlee Reservoir at Burnt River also exceeded fish-eating wildlife criteria. Concentrations of organochlorine compounds in whole-body samples, in general, were larger than concentrations in sportfish fillets. However, concentrations of dieldrin and total DDT in fillets of channel catfish from the Snake River at Nyssa and Brownlee Reservoir at Burnt River, and concentrations of total DDT in fillets of smallmouth bass and white crappie from Brownlee Reservoir at Burnt River exceeded a cancer risk screening value of 10 -6 established by the U.S. Environmental Protection Agency. Concentrations of organochlorine compounds in bed sediment were smaller than concentrations in fish tissue. Concentrations of p,p'DDE, the only compound detected in all three bed-sediment samples, ranged from 1.1 micrograms per kilogram dry weight in C.J. Strike Reservoir to 11 micrograms per kilogram dry weight in Brownlee Reservoir at Burnt River. Data from this study, compared with data collected in the upper Snake River Basin from 1992 to 1994, indicates that, in general, organochlorine concentrations in fish tissue and bed sediment increased from the headwaters of the Snake River in Wyoming downstream to Brownlee Reservoir. The largest trace-element concentrations in fish tissue were in liver samples from carp from Brownlee Reservoir at Burnt River and suckers from the Boise River near Twin Springs. Concentrations of most trace elements were larger in livers than in the sport- fish fillets. However, mercury concentrations were generally larger in the sportfish fillets; they ranged from 0.08 microgram per gram wet weight in yellow perch from C.J. Strike Reservoir to 0.32 microgram per gram wet weight in channel catfish from Brownlee Reservoir at Burnt River. None of the trace-element concentrations in fillets exceeded median international standards or U.S. Food and Drug Administration action levels. Large trace-element concentrations in the upper Snake River Basin were reported in liver samples from suckers from headwater streams, probably a result of historical mining and weathering of metal-rich rocks. Concentrations of most trace elements in the bed-sediment samples were largest in Brownlee Reservoir at Mountain Man Lodge. Concentrations of arsenic, cadmium, chromium, copper, nickel, and zinc in bed sediment from the Mountain Man Lodge site exceeded either the threshold effect level or probable effect level established by the Canadian Government for the protection of benthic life. Arsenic, chromium, copper, and nickel concentrations in bed sediment from Brownlee Reservoir at Burnt River and chromium, copper, and nickel in bed sediment from C.J. Strike Reservoir also exceeded the threshold effect level.

Idaho, Oregon↗
USGS2011

A taping method for external transmitter attachment on aquatic snakes

Radio telemetry is extremely useful for studying habitat use and movements of free ranging snakes. Surgically implanting radio transmitters into the body cavity of snakes is standard practice in most studies (e.g., Reinert and Cundall 1982; Weatherhead and Blouin-Demers 2004), but this implanting method has its drawbacks. Surgery itself is risky for individual snakes because of the potential for infection or incomplete healing of the incision site. Also, transmitters that are small enough to be carried by small or slender snakes have a relatively short battery life and need to be removed or replaced often, thus requiring frequent surgeries. In rare or endangered snake species, the risk of using invasive implantation surgery may not be merited. External attachment methods are relatively non-invasive and allow removal and replacement of radio transmitters on smaller snakes. The Giant Gartersnake ( Thamnophis gigas ) is a semi-aquatic snake endemic to wetlands of the Central Valley of California, USA, and is federally and state listed as threatened (U.S. Fish and Wildlife Service 1999). Telemetry studies of the habitat use and movements of this species typically used surgically implanted radio transmitters, but this method is limited to larger snakes, primarily females, because of size requirements for surgery (> 250 g). To overcome difficulties and biases associated with radio telemetry of T. gigas , we developed and evaluated several alternative techniques to attach external radio transmitters using tape.

California↗
USGS2016

Diadophis Puntatus Puntatus (Southern Ring-neck Snake) Predation

DIADOPHIS PUNCTATUS PUNCTATUS (Southern Ring-necked Snake). PREDATION. Here I present the first record of Buteo lineatus (Red-shouldered Hawk) predator on a Diadophis p. punctatus. At ca. 1100h on l2 February2 013,I observed a B. lineatus eating a katydid in Corkscrew Swamp Sanctuary (26.2730'N, 81.6079"W;WGS 84), Collier Co., Florida, USA. The hawk was in a Pond Cypress tree on the edge of a small prairie bordered on one side by a cypress swamp and by pine woodland on the other. Immediately upon consuming the katydid, the hawk flew to the ground ca. 1.5 m from an elevated boardwalk to grab an adult D. punctatus. It then flew with the snake in its talons to a branch 3 m high ca. l0 m from the boardwalk. The hawk stretched and otherwise manipulated the struggling snake (Fig.1) before consuming the still moving snake. Although snakes are a well-known component of B. lineatus diet (Clark1 987A. Field Guide to the Hawks of North America. Houghton Mifflin Co. Boston, Massachusetts 198 pp.), I found only one literature reference to Red-shouldered Hawks eating Ring-neck Snakes (Fisher 1893.Hawks and Owls of the United States in their Relation to Agriculture. U.S. Dept. Agric., Div Ornith. Mamm. Bull. 3). That specimen was from Canton, New York (taken 26 Oct IBBB) and would be a D. p. edwardisii (Northern Ring-necked Snake), while the snake reported on here is a Diadophis p. punctatus (USNM Herp Image 2847a -c). Based on evidence presented by Fontanella et al. (2008. Mol. Phylogenet Evol.46:1049-1070), D. p. edwardisii and D. p. punctatus are likely different species.

Florida↗
USGS2012

Nest defense- Grassland bird responses to snakes

Predation is the primary source of nest mortality for most passerines; thus, behaviors to reduce the impacts of predation are frequently quantified to study learning, adaptation, and coevolution among predator and prey species. Video surveillance of nests has made it possible to examine real-time parental nest defense. During 1999-2009, we used video camera systems to monitor 518 nests of grassland birds. We reviewed video of 48 visits by snakes to 34 nests; 37 of these visits resulted in predation of active nests. When adult birds encountered snakes at the nest (n = 33 visits), 76% of the encounters resulted in a form of nest defense (nonaggressive or aggressive); in 47% of the encounters, birds physically struck snakes. When defending nests, most birds pecked at the snakes; Eastern Meadowlarks (Sturnella magna) and Bobolinks (Dolichonyx oryzivorus) pecked most frequently in anyone encounter. Also, two Eastern Meadowlarks ran around snakes, frequently with wings spread, and three Bobolinks struck at snakes from the air. Nest defense rarely appeared to alter snake behavior; the contents of seven nests defended aggressively and two nests defended nonaggressively were partially depredated, whereas the contents of six nests defended each way were consumed completely. One fledgling was produced at each of three nests that had been aggressively defended. During aggressive defense, one snake appeared to be driven away and one was wounded. Our findings should be a useful starting point for further research. For example, future researchers may be able to determine whether the behavioral variation we observed in nest defense reflects species differences, anatomic or phylogenetic constraints, or individual differences related to a bird's prior experience. There appears to be much potential for studying nest defense behavior using video recording of both real and simulated encounters.

Studies in Avian Biology↗
USGS2020

Research, monitoring, and evaluation of emerging issues and measures to recover the Snake River Fall Chinook Salmon ESU: January 2019 - December 2019

The portion of the Snake River fall Chinook salmon Oncorhynchus tshawytscha evolutionary significant unit (ESU) that spawns upstream of Lower Granite Dam transitioned from low to high abundance during 19922019 in association with U.S. Endangered Species Act recovery efforts and other federally mandated actions. This annual report focuses on (1) numeric and habitat use responses by natural- and hatchery-origin spawners, (2) phenotypic and numeric responses by natural-origin juveniles, and (3) use of a small unmanned aerial system (sUAS) to search for fall Chinook salmon redds and carcasses. Spawners have located and used most of the available spawning habitat and that habitat is gradually approaching redd capacity. Timing of spawning and fry emergence have been relatively stable, but effects of density dependence are evident in juvenile life stages. Apparent abundance of juvenile fall Chinook salmon has increased and we noted the following responses: parr dispersal from riverine rearing habitat into Lower Granite Reservoir has become earlier; growth rate (g/d) and dispersal size of parr declined; and passage timing of smolts from the two Snake River reaches has become earlier and downstream movement rate faster. These findings coupled with stock-recruitment analyses presented in this report provide evidence for density-dependence in the Snake River reaches and in Lower Granite Reservoir that was influenced by the expansion of the recovery program. The long-term goal is to use this information in a comprehensive modeling effort to conduct action-effectiveness and uncertainty research and to inform Fish Population, Hydrosystem, Harvest, Hatchery, and Predation and Invasive Species Management Research, Monitoring, and Evaluation (RM&E) progams. In 2019, the U.S. Geological Survey (USGS) shifted survey efforts in the Snake River toward deepwater redd searches and fish collection for parentage-based tagging (PBT) analyses because all unmanned aerial system (UAS) activities were suspended by the Department of the Interior two weeks into the spawning season. We counted 81 deepwater redds at 17 of the 29 sites surveyed. Redd depths averaged 3.6 m. We collected a total of 123 live fall Chinook salmon from 16 unique geographic locations that spanned 55 river kilometers. Forty-six fish were recovered at Eureka Bar (rkm 307.1) and Kirby Creek (rkm 352.0), which accounted for 37% of all collected fish in 2019. Most (73 fish) post-spawned salmon were collected from early to mid-November just after peak spawning. A summary of 2019 PBT results can be found in Appendix A.1. In 2019, we PIT tagged subyearling fall Chinook salmon in both the Snake and Clearwater rivers. In the Snake River, we tagged 410 fish with 8-mm tags, 666 fish with 9-mm tags, and 1,082 fish 12-mm tags. During seining, our recapture rate of previously tagged fish was slightly higher in the lower reach at 11.4% than in the upper reach at 10.6%. In an effort to represent more of the population through tagging, we tagged fish as small as 45 mm with 8-mm tags at one site in the upper reach. This allowed us to increase the number of fish tagged in that reach by 17.7%. An additional 10.6% of collected fish could have been tagged in the lower reach had we used 8-mm tags in that reach. In the Clearwater River, we tagged 2,451 subyearlings and recaptured 260 (10.6%) fish in the river and 66 fish (48 tagged by USGS, 18 tagged by the Nez Perce Tribe) at Lower Granite Dam during October to provide information for growth estimation. Within riverine habitats, growth in both length and mass were higher for fish tagged with 8-mm tags than with 9- and 12-mm tags. Estimated growth in length and mass of subyearlings was higher in Lower Granite Reservoir than in riverine habitats. We adapted existing statistical models used to estimate abundance of steelhead and spring/summer Chinook salmon for fall Chinook salmon passing Lower Granite Dam. Run reconstruction efforts to date at Lower Granite Dam for Snake River fall Chinook salmon have provided estimates of the number of returning adults but with no measure of uncertainty about the estimates. The objective of this study was to estimate the abundance, with uncertainty, of marked (coded-wire tagged CWT or adipose clipped) and unmarked fall Chinook salmon past Lower Granite Dam for return years 20032018. Estimating uncertainty is important for informing the state-space life cycle model (Chapter 5), which incorporates both observation and process uncertainty into parameter estimates. The coefficient of variation (CV) for log- abundance was 1.0% or less in all years, whereas the CV for abundance averaged 4.2% and ranged from 1.4% to 10.4% among years. Over the past five years, we have been developing a two-stage state-space life-cycle model for naturally produced fall Chinook salmon in the Snake River basin. Initial efforts focused on generating juvenile and adult abundance estimates, with estimates of uncertainty, for informing the life-cycle model. In this report we 1) describe the statistical life-cycle model and improvements made since our last report to the Independent Scientific Advisory Board (ISAB), 2) estimate the effects of covariates on key demographic parameters, and 3) use the fitted life- cycle model to simulate population trajectories under hydrosystem actions proposed for the NOAA 2020 Biological Opinion (hereafter, the Proposed Action). Major recent advancements to the model include revised juvenile abundance estimates, the ability to estimate smolt-to-adult return rates (SAR) separately for subyearling and yearling juvenile fall Chinook salmon, and improvements in the observation model for estimating age, sex, and outmigration structure in adult returns. We examined the effect of numerous environmental, hydrosystem, and ocean covariates on key demographic parameters but only a few covariates were significant. For the adult-to-juvenile transition, we found the maximum weekly river flows during the winter egg- incubation period had a significant negative effect on the juvenile outmigrant abundance from that brood year. For subyearling outmigrants, percent spill during the summer had a significant positive effect on SAR and the mean winter PDO (Pacific Decadal Oscillation) had a significant negative effect on SAR. For yearling outmigrants, NPGO (North Pacific Gyre Oscillation) had a significant positive effect on SAR. We used the fitted model to simulate population trajectories under the Proposed Action, and the median 10-year geometric mean abundance was 8,222 female spawners (interquartile range: 2,592 26,714). Overall, the probability of quasi- extinction (probability of falling below 50 female spawners for 4 consecutive years) was low, with only 1.6% of all simulations having a quasi-extinction probability >0.95. Although quasi-extinction probability was low, we did not assess the additional effect of climate change, which would be expected to increase quasi-extinction probability.

Idaho, Oregon, Washington↗
USGS2021

Foraging behavior in a generalist snake (brown treesnake, Boiga irregularis) with implications for avian reintroduction and recovery

Broad foraging classifications, such as generalist or specialist forager, are generally beneficial for population management in defining expectations of typical behavior. However, better understanding as to how individual variance in behavior interfaces with management actions, such as control of an invasive predator (such as brown treesnakes; Boiga irregularis ) responsible for ecological collapse of a taxonomic group (birds), may affect conservation goals. In the context of predator control, better understanding of foraging ecology and prey specificity helps to ensure that food-based control programs are removing the target individuals. We sought to quantify whether differences in a dietary generalist snake species was measurable during captive trials using mice or birds as the prey choice. We presented snakes with prey choices that could be or are integrated with tools deployed by managers for control to directly relate choice or preference to management action. We collected wild brown treesnakes and classified them as bird eaters or of unknown diet based on food items present in their digestive tract at the time of capture. In experimental tests, we used live birds and live mice in traps, as well as bird and mouse carrion presented on platforms, to measure interest, take rates, and repeatability (preference) by snakes. We found that all individuals spent more time investigating live birds than they did mice, independent of dietary history, which resulted in twice as many snakes being captured in traps with live birds compared to live mice. There was, however, roughly equal interest in mouse and bird carrion. Within individuals, there was evidence for decreased interest in mouse carrion, if individuals ate birds in the wild. Choice of carrion type was repeatable across trials, suggesting preference may exist. Overall, interest in both live mice and mouse carrion was greatest for medium-bodied snakes, while interest in bird carrion was independent of snake size. Our results indicate that management of invasive predators, including reptiles, may more rapidly achieve conservation targets when managers consider individual heterogeneity in behavior. For brown treesnakes more interested in birds, managers may remove more snakes if they use avian food lures; increased removal of avian specialists may facilitate avian recovery.

Applied Animal Behavior Science↗
USGS2015

Life history diversity of Snake River finespotted cutthroat trout: managing for persistence in a rapidly changing environment

Over the last century, native trout have experienced dramatic population declines, particularly in larger river systems where habitats associated with different spawning life history forms have been lost through habitat degradation and fragmentation. The resulting decrease in life history diversity has affected the capacity of populations to respond to environmental variability and disturbance. Unfortunately, because few large rivers are intact enough to permit full expression of life history diversity, it is unclear what patterns of diversity should be a conservation target. In this study, radiotelemetry was used to identify spawning and migration patterns of Snake River Finespotted Cutthroat Trout Oncorhynchus clarkii behnkei in the upper Snake River. Individuals were implanted with radio tags in October 2007 and 2008, and monitored through October 2009. Radio-tagged cutthroat trout in the upper Snake River exhibited variation in spawning habitat type and location, migration distance, spawn timing, postspawning behavior, and susceptibility to mortality sources. Between May and July, Cutthroat Trout spawned in runoff-dominated tributaries, groundwater-dominated spring creeks, and side channels of the Snake River. Individuals migrated up to 101 km from tagging locations in the upper Snake River to access spawning habitats, indicating that the upper Snake River provided seasonal habitat for spawners originating throughout the watershed. Postspawning behavior also varied; by August each year, 28% of spring-creek spawners remained in their spawning location, compared with 0% of side-channel spawners and 7% of tributary spawners. These spawning and migration patterns reflect the connectivity, habitat diversity, and dynamic template of the Snake River. Ultimately, promoting life history diversity through restoration of complex habitats may provide the most opportunities for cutthroat trout persistence in an environment likely to experience increased variability from climate change and disturbance from invasive species.

Wyoming↗
USGS2013

Ghost of habitat past: historic habitat affects the contemporary distribution of giant garter snakes in a modified landscape.

Historic habitat conditions can affect contemporary communities and populations, but most studies of historic habitat are based on the reduction in habitat extent or connectivity. Little is known about the effects of historic habitat on contemporary species distributions when historic habitat has been nearly completely removed, but species persist in a highly altered landscape. More than 93% of the historic wetlands in the Central Valley of California, USA, have been drained and converted to agricultural and other uses, but agricultural wetlands, such as rice and its supporting infrastructure of canals, allow some species to persist. Little is known about the distribution of giant garter snakes Thamnophis gigas , a rare aquatic snake species inhabiting this predominantly agricultural landscape, or the variables that affect where this species occurs. We used occupancy modeling to examine the distribution of giant garter snakes at the landscape scale in the Sacramento Valley (northern portion of the Central Valley) of California, with an emphasis on the relative strength of historic and contemporary variables (landscape-scale habitat, local microhabitat, vegetation composition and relative prey counts) for predicting giant garter snake occurrence. Proximity to historic marsh best explained variation in the probability of occurrence of giant garter snakes at the landscape scale, with greater probability of occurrence near historic marsh. We suspect that the importance of distance to historic marsh represents dispersal limitations of giant garter snakes. These results suggest that preserving and restoring areas near historic marsh, and minimizing activities that reduce the extent of marsh or marsh-like (e.g. rice agriculture, canal) habitats near historic marsh may be advantageous to giant garter snakes.

Animal Conservation↗
USGS2007

Springflow effects on chemical loads in the Snake River, south-central Idaho

The 150-kilometer middle reach of the Snake River (middle Snake) in south-central Idaho receives large quantities of water from springs discharging along the north side of the river from the regional Snake River Plain aquifer. Water-quality samples collected from nine north- side springs in April 1994 indicated that springs in the upstream part or the reach had larger concentrations of dissolved solids, dissolved nitrate, total nitrogen, tritium, and heavy isotopes of hydrogen and oxygen than to springs in the downstream part of the reach. Because the spring chemistry varies in the reach, discharge from the springs resulted in a degradation in water quality in some parts or the middle Snake and improvements in water quality in other parts. Depending on the annual discharge in the Snake River, the contribution from the north-side springs represented 32 to 66 percent of the discharge, 32 to 57 percent of the dissolved solids, 26 to 50 percent of the total nitrogen, and 7 to 14 percent of the total phosphorus transported annually from the middle Snake. Synoptic sampling showed that the north- side springs contributed 84 percent of the discharge and 35, 40, and 10 percent of the dissolved solids, total nitrogen, and total phosphorus lead, respectively, to the Snake River during the peak of the irrigation season in 1994.

Water Resources Bulletin↗