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USGS2018

Size, growth, and size‐selective mortality of subyearling Chinook Salmon during early marine residence in Puget Sound

In marine ecosystems, survival can be heavily influenced by size‐selective mortality during juvenile life stages. Understanding how and when size‐selective mortality operates on a population can reveal underlying growth dynamics and size‐selective ecological processes affecting the population and thus can be used to guide conservation efforts. For subyearling Chinook Salmon Oncorhynchus tshawytscha in Puget Sound, previous research reported a strong positive relationship between marine survival and body mass during midsummer in epipelagic habitats within Puget Sound, suggesting that early marine growth drives survival. However, a fine‐scale analysis of size‐selective mortality is needed to identify specific critical growth periods and habitats. The objectives of this study were to (1) describe occupancy patterns across estuarine delta, nearshore marine, and offshore epipelagic habitats in Puget Sound; (2) describe changes in FL and weight observed across habitats and time; (3) evaluate evidence for size‐selective mortality; and (4) illustrate how marine survival of the stocks studied may be affected by variation in July weight. In 2014 and 2015, we sampled FLs, weights, and scales from seven hatchery‐origin and two natural‐origin stocks of subyearling Chinook Salmon captured every 2 weeks during out‐migration and rearing in estuary, nearshore, and offshore habitats within Puget Sound. Natural‐origin stocks had more protracted habitat occupancy patterns than hatchery‐origin stocks and were smaller than hatchery‐origin stocks in both years. Regardless of origin, subyearlings were longer and heavier and grew faster in offshore habitats compared to estuary and nearshore habitats. For all stocks, we found little evidence of size‐selective mortality among habitats in Puget Sound. These patterns were consistent in both years. Finally, the weights of subyearlings sampled during July in the offshore habitat predicted Puget Sound‐wide marine survival rates of 0.4% for 2014 and 2.0% for 2015, with stock‐specific predictions ranging from 0.18% to 11.70%.

Washington↗

USGS2019

Assessing the impact of charr research past, present, and future

The 9th International Charr Symposium convened on 18–21 June 2018, in Duluth, Minnesota, USA to gather scientists with an interest in charr biology and management from the entire geographical range of the genus Salvelinus. The symposium was attended by 169 individuals from six countries, and included 99 oral and 32 poster presentations, 28 of which were published in the ensuing proceedings. Topic areas of presentations and publications included: (1) cultural anthropology; (2) genetics, evolution, taxonomy and systematics; (3) behavior, movement and habitat; (4) reproductive ecology, developmental ontogeny and physiology; (5) population ecology, dynamics and life history; (6) trophic ecology, parasites, predators, toxicology and pollution; and (7) management. Research reported in these proceedings has built upon the history of earlier symposiums and will be continued with the 10th symposium scheduled to convene in Nikko City, Tochigi Prefecture, Japan, in 2021.

Hydrobiologia↗

USGS2000

Integration of a numerical model and remotely sensed data to study urban/rural land surface climate processes

Simulation of urban/rural land surface climate processes using boundary layer climate models requires accurate input data with regard to surface thermal and radiative properties. The research reported here resulted in development of a procedure to integrate the satellite-derived surface biophysical parameters with a boundary layer climate model for simulating spatial surface energy exchange. The procedure was tested through spatial surface energy balance simulation of an urban/rural landscape in eastern Nebraska. The modeled surface temperature and net radiation were compared to those derived from the concurrent satellite data. The errors of the modeled surface temperature were small, and were mainly attributed to uncertainties in the estimation of surface moisture availability and satellite-derived surface radiant temperature. Modeled net radiation was also in agreement with the values calculated from satellite data. Modeled turbulent heat fluxes were in general agreement as compared to those reported in the literature, but the model tended to overestimate the latent heat flux for most rural land cover types. It was concluded that by incorporation of satellite-derived surface physical parameters into a boundary layer model, simulation of spatial land surface climate processes was much improved. The method and procedures developed from this study can be utilized in other boundary layer climate models.

Nebraska↗

USGS2017

Salinity influences on aboveground and belowground net primary productivity in tidal wetlands

Tidal freshwater wetlands are one of the most vulnerable ecosystems to climate change and rising sea levels. However salinification within these systems is poorly understood, therefore, productivity (litterfall, woody biomass, and fine roots) were investigated on three forested tidal wetlands [(1) freshwater, (2) moderately saline, and (3) heavily salt-impacted] and a marsh along the Waccamaw and Turkey Creek in South Carolina. Mean aboveground (litterfall and woody biomass) production on the freshwater, moderately saline, heavily salt-impacted, and marsh, respectively, was 1,061, 492, 79, and 0     g   m − 2   year − 1 versus belowground (fine roots) 860, 490, 620, and 2,128     g   m − 2   year − 1 . Litterfall and woody biomass displayed an inverse relationship with salinity. Shifts in productivity across saline sites is of concern because sea level is predicted to continue rising. Results from the research reported in this paper provide baseline data upon which coupled hydrologic/wetland models can be created to quantify future changes in tidal forest functions.

South Carolina↗

USGS2022

Transporting timbers to Chaco Canyon: How heavy, how many carriers and how far/fast?

A total of 200,000+ large timbers were transported >75 km to Chaco Canyon, a political and religious center in the precontact U.S. Southwest, using only human power. Previous researchers reported that typical primary roof beams (vigas) of Chacoan Great Houses averaged 0.22 m in diameter and 5 m in length with a mass of 275 kg. However, the 275 kg mass appears to be a miscalculation. Here, we calculate that a ponderosa pine timber of the stated dimensions would have a mass between 85–140 kg depending on the water content. While still a prodigious load, this recalculated mass requires revisions to estimates of the labor, time, and energy required to build Great Houses at Chaco. Based on contemporary measurements on professional load carriers and soldiers, we estimate that as few as two people could have carried an 85 kg timber across 100 km in as few as 21 h of active walking.

Kiva↗

USGS2002

SHE analysis for biozonation of benthic foraminiferal assemblages from western arctic ocean

Benthic foraminiferal species abundance in samples from three Mendeleyev Ridge box cores were analyzed by cluster analysis and the newer method of SHE analysis. Previously, the latter technique only has been used on foraminiferal data from depth transects of modern surface sediment samples. Unlike most methods, which initially compare all possible pairs of samples, the SHE procedure results in a linear pattern if a sequence of samples are from the same statistical distribution. A change in slope indicates a statistical change in community structure and/or a change in species composition. The research reported herein is the first application of SHE for the purpose of identifying biozones in sediment core samples for the purpose of stratigraphic correlation. Both cluster analysis and the SHE method provided zonation within cores. However, the cluster method often produced clusters that were difficult to identify and also contained a mixture of samples without stratigraphic continuity. In contrast, SHE resulted in easily identifiable biozones and ensured temporal continuity within them. In general, the cluster analysis produced more zones than the SHE analysis. About 87% of the cluster zones and 64% of the SHE zones were correlated across more than one core. The average age range for correlated biozone boundaries among the three cores, based on radiocarbon dates, was 821 years using cluster analysis and 296 years using SHE. The sequential nature of the analysis, ease in choosing boundaries, and correlation of these boundaries across cores makes SHE the preferred technique.

Palaios↗

USGS1986

Water resources scientific information center

The Water Resources Scientific Information Center (WRSIC) acquires, abstracts and indexes the major water resources related literature of the world, and makes information available to the water resources community and the public. A component of the Water Resources Division of the US Geological Survey, the Center maintains a searchable computerized bibliographic data base, and publishers a monthly journal of abstracts. Through its services, the Center is able to provide reliable scientific and technical information about the most recent water resources developments, as well as long-term trends and changes. WRSIC was established in 1966 by the Secretary of the Interior to further the objectives of the Water Resources Research Act of 1964--legislation that encouraged research in water resources and the prevention of needless duplication of research efforts. It was determined the WRSIC should be the national center for information on water resources, covering research reports, scientific journals, and other water resources literature of the world. WRSIC would evaluate all water resources literature, catalog selected articles, and make the information available in publications or by computer access. In this way WRSIC would increase the availability and awareness of water related scientific and technical information. (Lantz-PTT)

Open-File Report↗

USGS1999

Restoration of bighorn sheep metapopulations in and near 15 national parks: Conservation of severely fragmented species; Volume II, Synopsis of research findings

In 1991, the National Park Service (NPS) initiated a series of research studies to support an effort to restore bighorn sheep (Ovis canadensis) into 15 national parks in the Intennountain West and Colorado Plateau areas (Fig. 1). The Biological Resources Division of the U.S. Geological Survey provided scientific advice and research coordination for the NPS restoration (Fig. 2). The research studies were conducted by scientists from the Biological Resources Division of the USGS (fonnerly NBS) (11 research studies), university-based scientists (Univ. of Wyoming- 2 studies, University of Colorado- 1, Colorado State University- 2, University of California, White Mountain Center- 1, Northern Arizona University - 1, Montana State University - 1) and by state agency veterinarians: Drs. Beth Williams of Wyoming, Mike Miller of Colorado, and Terry Spraker of Colorado State University. Only the highlights of these research studies are presented below. Full research reports are available in Volume III of this series.

Colorado, Montana, North Dakota, South Dakota, Uta↗

USGS1999

Computer Program for Point Location And Calculation of ERror (PLACER)

A program designed for point location and calculation of error (PLACER) was developed as part of the Quality Assurance Program of the Federal Highway Administration/U.S. Geological Survey (USGS) National Data and Methodology Synthesis (NDAMS) review process. The program provides a standard method to derive study-site locations from site maps in highwayrunoff, urban-runoff, and other research reports. This report provides a guide for using PLACER, documents methods used to estimate study-site locations, documents the NDAMS Study-Site Locator Form, and documents the FORTRAN code used to implement the method. PLACER is a simple program that calculates the latitude and longitude coordinates of one or more study sites plotted on a published map and estimates the uncertainty of these calculated coordinates. PLACER calculates the latitude and longitude of each study site by interpolating between the coordinates of known features and the locations of study sites using any consistent, linear, user-defined coordinate system. This program will read data entered from the computer keyboard and(or) from a formatted text file, and will write the results to the computer screen and to a text file. PLACER is readily transferable to different computers and operating systems with few (if any) modifications because it is written in standard FORTRAN. PLACER can be used to calculate study site locations in latitude and longitude, using known map coordinates or features that are identifiable in geographic information data bases such as USGS Geographic Names Information System, which is available on the World Wide Web.

Open-File Report↗

USGS2021

Evaluation of SWIR crop residue bands for the Landsat Next mission

This research reports the findings of a Landsat Next expert review panel that evaluated the use of narrow shortwave infrared (SWIR) reflectance bands to measure ligno-cellulose absorption features centered near 2100 and 2300 nm, with the objective of measuring and mapping non-photosynthetic vegetation (NPV), crop residue cover, and the adoption of conservation tillage practices within agricultural landscapes. Results could also apply to detection of NPV in pasture, grazing lands, and non-agricultural settings. Currently, there are no satellite data sources that provide narrowband or hyperspectral SWIR imagery at sufficient volume to map NPV at a regional scale. The Landsat Next mission, currently under design and expected to launch in the late 2020’s, provides the opportunity for achieving increased SWIR sampling and spectral resolution with the adoption of new sensor technology. This study employed hyperspectral data collected from 916 agricultural field locations with varying fractional NPV, fractional green vegetation, and surface moisture contents. These spectra were processed to generate narrow bands with centers at 2040, 2100, 2210, 2260, and 2230 nm, at various bandwidths, that were subsequently used to derive 13 NPV spectral indices from each spectrum. For crop residues with minimal green vegetation cover, two-band indices derived from 2210 and 2260 nm bands were top performers for measuring NPV (R 2 = 0.81, RMSE = 0.13) using bandwidths of 30 to 50 nm, and the addition of a third band at 2100 nm increased resistance to atmospheric correction residuals and improved mission continuity with Landsat 8 Operational Land Imager Band 7. For prediction of NPV over a full range of green vegetation cover, the Cellulose Absorption Index, derived from 2040, 2100, and 2210 nm bands, was top performer (R 2 = 0.77, RMSE = 0.17), but required a narrow (≤20 nm) bandwidth at 2040 nm to avoid interference from atmospheric carbon dioxide absorption. In comparison, broadband NPV indices utilizing Landsat 8 bands centered at 1610 and 2200 nm performed poorly in measuring fractional NPV (R 2 = 0.44), with significantly increased interference from green vegetation.

Remote Sensing↗

USGS2001

Geochemical and mineralogical studies of dinosaur bone from the Morrison Formation at Dinosaur Ridge

The dinosaur bones first discovered in 1877 in the Upper Jurassic Morrison Formation at Morrison, Colorado were the first major find of dinosaur skeletons in the western U.S. and led to the recognition of four new dinosaur genera (Apatosaurus, Allosaurus, Diplodocus, and Stegosaurus). Eight articles dealing with these bones which appeared as research reports in the annual reports of the Friends of Dinosaur Ridge from 1990-1999 are condensed and summarized with some additional comments. Two of the articles are about the mineralogy and preservation of the bones; two are about the physical description of the bone occurrence; two are about the history of the site, and two are about use of novel instrumental methods (ground-penetrating radar and a directional scintillometer) to search for new bones.

Mountain Geologist↗

USGS2013

An overview of the Southern Nevada Agency Partnership science and research synthesis

Maintaining and restoring the diverse ecosystems and resources that occur in southern Nevada in the face of rapid socio-economic and ecological change presents numerous challenged to Federal land managers. Rapid population growth since the 1980s, the land uses associated with that growth, and the interactions of those uses with the generally dry and highly variable climate result in numerous stresses to ecosystems, species, and cultural resource. In addition, climate models predict that the rate of temperature increase and, thus, changes in ecological processes, will be highest for ecosystems like the Mojave Desert. The Southern Nevada Agency Partnership (SNAP; http:www.SNAP.gov) was established in 1999 to address common issues pertaining to public lands in southern Nevada. Partners include the Bureau of Land Management, National Park Service, U.S. Fish and Wildlife Service, and USDA Forest Service and they work with each other, the local community, and other partners. SNAP agencies manage more than seven million acres of public lands in southern Nevada (95% of the land area). Federal land includes two national recreation areas, two national conservation area, four national wildlife refuges, 18 congressionally designated wilderness areas, five wilderness study areas, and 22 areas of critical environmental concern. The partnership's activities are mainly centered in Southern Nevada's Clark County (fig. 1.1), but lands managed by SNAP partner agencies also include portions of Lake Mead National Recreation Area in Mohave County, Arizona, U.S. Fish and Wildlife Service, and USDA Forest Service-managed lands in Lincoln and Nye Counties, Nevada, and all lands and activities managed by the Southern Nevada District Office of the Bureau of Land Management. These lands encompass nine distinct ecosystem types (fig. 1.2), support multiple species of management concern an 17 listed species, and are rich in cultural and historic resource. This introductory executive summary discusses the Science and Research Strategy developed by the SNAP agencies, the Science and Research Report, and need for science-based management in southern Nevada.

Nevada↗

USGS2015

An assessment of the impact of the pet trade on five CITES-Appendix II case studies - Boa constrictor imperator

Boa constrictor is a wide ranging snake species that is common in the pet trade and is currently listed in CITES Appendix II. Hog Island boas, or Cayos Cochinos boas, are a dwarf, insular race of Boa constrictor imperator endemic to the Cayos Cochinos Archipelago, Honduras. Cayos Cochinos boas are prized in the international pet trade for their light pink dorsal coloration, as well as for being much smaller and more docile than mainland boas (Porras, 1999; Russo, 2007). The boa population in the Cayos Cochinos was heavily exploited for the pet trade from 1979 to 1993, and researchers reported finding no boas on the islands during a five day herpetological survey trip in the early 1990s (Wilson and CruzDiaz, 1993), leading to the speculation that the population had been extirpated (e.g., Russo, 2007). The Cayos Cochinos Archipelago Natural Marine Monument has been managed by the Honduran Coral Reef Foundation since 1994 and prohibits removal of boas from the area. Poaching for the pet trade continues today, although at a lower level. Due to the endemic nature of this island morph of B. c. imperator it is imperative that we understand the dynamics of the populations and the ongoing threats that could negatively impact their long-term survival.

Cayos Cochinos Archipelago (Hog Islands), Islas de↗

USGS2002

Mechanisms of impact and potential recovery of nearshore vertebrate predators following the 1989 Exxon Valdez oil spill

The 1989 spill of some 42 million L of crude oil into Prince William Sound, Alaska, represents not only the largest tanker spill in United States history, but the world’s largest spill in northern waters. Acute effects have been studied extensively. However, efforts to quantify the spill’s long-term chronic effects and develop defensible restoration measures have been plagued by varying levels of scientific uncertainty. That such uncertainty exists is not unexpected. The spill occurred in Prince William Sound’s highly variable physical setting typified by its complex oceanography and fjord-like geomorphology. Additionally, uncertainty was driven by the scarcity of precise pre-spill population estimates and spotty life-history information for most species. The research reported herein in, structured in eight primary papers and 27 supporting papers (appendices), documents the state of recovery and assessments of continuing constraints to population recovery for four vertebrate predators (sea otter Enhydra lutris , harlequin duck Histrionicus histrionicus , river otter Lontra canadensis , and pigeon guillemot Cepphus columba ) whose recovery status remained uncertain some 5 years after the Exxon Valdez oil spill. These species are used in a collective weight of evidence approach to better understand the process of coastal community recovery. Each species is examined for the strength of information it brings in health, population, and trophic metrics to support or reject the hypothesis of continuing oil effects in the nearshore system versus the alternatives that food constraints or demographic bottlenecks limit these focal species. While data for individual species contain various levels of uncertainty, scientific confidence is developed in the following picture when examined across species, metric, and hypothesis: Within the nearshore coastal environment, sporadic releases of residual oil are occurring, and benthic species, primarily invertebrates, are being exposed in a temporally and spatially patchy manner sufficient to transport oil up through the food chain. Thus, for the two invertebrate-feeders, sea otter and harlequin duck, evidence exists over several lines of investigation to suggest that local-scale populations continue to be constrained not by food availability or natural demographic processes, but by increased levels of mortality coincident with continued exposure to residual oil. Conversely, weight of evidence suggests that only limited direct oil-related effects are being transferred through the fish trophic pathway. Sufficient evidence suggests recovery is occurring in river otter populations, while the lack of recovery in pigeon guillemot may be attributed to food limitations (both natural and indirectly related to the spill) and/or slow demographic response to initial acute mortalities. Individual lines of investigation often contained uncertainty, but the collective weight of evidence presented in this multipaper volume indicates lack of full recovery of the nearshore ecosystem from the Exxon Valdez oil spill nearly a decade following the event. Integrated, multispecies approaches can allow sufficient weight of evidence to develop despite inherent system variability or data limitations and, thus, facilitate both better societal understanding of such pollution events and development of appropriate restoration responses.

Alaska↗

USGS2020

The response of streams to changes in atmospheric deposition of sulfur and nitrogen in the Adirondack Mountains

Acidic deposition is the result of upwind sulfur (S) and nitrogen (N) emissions into the atmosphere from human activities. Environmental impacts from acidic deposition across forested landscapes include acidification of soil and drainage water, depletion of available soil nutrient bases, and impacts to and changes in forest and aquatic species composition and biodiversity. Acidic deposition can mobilize aluminum (Al) from soil-to-soil solution and subsequently to drainage water in forms that can be toxic to aquatic life. When exposed to decreasing levels of acidic deposition, which has been occurring in New York since the late 1970s, some soils and drainage waters have become gradually less acidic. Remaining questions relate to effects on stream resources, anticipated resource recovery under increasingly lower levels of deposition, and the levels of deposition (target loads, TLs) needed to reach a range of stream ecosystem recovery targets. Environmental scientists commonly estimate thresholds of air pollutant emissions and resulting atmospheric deposition at which adverse ecological effects are manifested. This analysis is often done using critical loads (CL) and/or TLs, using approaches that account for the spatial and temporal aspects of acidification and recovery. Exceedance represents the extent to which current levels of acidic deposition exceed the level expected to cause ecological harm. The research reported here is intended to help address S and N deposition TLs and ecosystem recovery of Adirondack streams, a resource that has been less thoroughly investigated than lakes. The overarching goal of this work is to highlight key considerations that will help inform decision-makers and ecosystem managers who are responsible for environmental policy in New York State and beyond. Salient aspects of stream TL modeling are discussed with an aim of informing not only scientists, but also policymakers, ecosystem managers, and nonscientists who are required to make decisions related to the effects of acidic deposition on natural ecosystems. Analyses reported herein quantify relations among chemical indicators and metrics of fish community health and biodiversity in streams of the Adirondack Park. This information is used to indicate levels of atmospheric deposition necessary to alleviate harmful effects on fish populations. Results of this investigation provide a framework that can be applied to better understand how modeled stream acid neutralizing capacity (ANC) values that are developed to support TL investigations can be adjusted to reflect high-flow ANC values that may be associated with toxic conditions. Since process models are often calibrated to a low-flow or average flow condition, the magnitude and spatial extent of TL exceedances increase substantially when episodic acidification is considered.

New York↗

USGS2020

Looking forward, looking back: Building resilience today: Training two report: International Arctic Research Center, Fairbanks, Alaska, January 28-30, 2020

The Looking Forward Looking Back: Building Resilience Today Training Two is the final training in a series of project engagement events with the partner communities of St. Michael, Kotlik, Kwigillingok, Quinhagak, and Iliamna. Training Two Report provides an overview of the activities and information presented during the training, which took place at the International Arctic Research Center in Fairbanks, Alaska January 28-30, 2020. Training One Report provides an introduction of the project, description of the project structure, and an overview of the activities and information covered in that training. Between Training One and Training Two, the project team traveled to, and worked individually with, each partner community to support the community teams with engaging their leadership and community members on climate issues and planning. This included identifying areas of concern, species of concern, and documenting community observations that could assist in further climate adaptation planning efforts.

Alaska↗

USGS2023

U.S. Geological Survey risk research community of practice 2021 workshop report—Workshop on considering equitable engagement in research design

The U.S. Geological Survey (USGS) Risk Research and Applications Community of Practice (Risk CoP) is a bureau-wide forum to share resources and discuss issues relevant to “conducting and applying scientific research in hazards—the dangerous processes or phenomena that may cause damage—to enhance the reduction of risk—the potential for societally relevant losses caused by hazards” (Ludwig and others, 2018). In 2021, this group held a workshop entitled “Considering Equitable Engagement in Research Design” as a part of its annual meeting. This report is a result of the workshop findings and includes additional input from the Risk CoP, other communities of practice, and subject matter experts across the USGS. The resources described in this report are intended to help guide USGS scientists aiming to include equity into their risk research but can apply to all USGS scientists, regardless of their research focus. This report shares key considerations for equitable engagement as identified by workshop participants, a discussion of the spectrum of engagement in equity-related research, and a toolkit that can help USGS scientists consider how to integrate equity into their work. Although this report is not comprehensive, it does seek to fill a gap that exists at the USGS; at the time of writing, there is no guidance on how to integrate equity into research design. The authors of this report believe that this document can serve as a foundation for future equity-related work at the USGS.

Open-File Report↗

USGS2009

Progress Report: Stratton Ecological Research Site - An Experimental Approach to Assess Effects of Various Grazing Treatments on Vegetation and Wildlife Communities Across Managed Burns and Habitat Controls

Understanding how management practices affect wildlife is fundamental to wise decisions for conservation of public lands. Prescribed fire and grazing timing are two management tools frequently used within publicly owned sagebrush ecosystems. We conducted a variety of surveys in order to assess the impacts of grazing timing strategies (early summer before peak green-up, mid-summer at peak green-up, and late summer after peak green-up) in conjunction with prescribed fire on avian and small mammal populations in a high-elevation sagebrush ecosystem. Avian surveys resulted in a large detection sample size for three bird species: Brewer's sparrow (Spizella breweri), horned lark (Eremophila alpestris), and vesper sparrow (Pooecetes gramineus). Brewer's sparrows had the lowest number of detections within the mid-summer grazing treatment compared to early and late summer grazing treatments, while horned larks and vesper sparrows had higher detection frequencies within the late summer grazing treatment. Summer and fall sage-grouse (Centrocercus urophasianus) pellet counts revealed that the greatest over-winter and over-summer use by sage-grouse occurred within the early summer grazing treatment with minimal use of burn treatment areas across all grazing treatments. Deer-mice (Peromyscus maniculatus) represented approximately 90 percent of small mammals captured and were most prevalent within the mid-summer grazing treatment. Sagebrush cover was greatest within the mid-summer grazing treatment. We monitored 50 and 103 nests in 2007 and 2008, respectively. The apparent success rate for shrub-obligate nesting species was 58 percent in 2007 and 63 percent in 2008. This research will support management of sagebrush ecosystems by providing public land managers with direct comparisons of wildlife response to management regimes.

Open-File Report↗