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The Detroit River: Effects of contaminants and human activities on aquatic plants and animals and their habitats

Despite the extensive urbanization of its watershed, the Detroit River still supports diverse fish and wildlife populations. Conflicting uses of the river for waste disposal, water withdrawals, shipping, recreation, and fishing require innovative management. Chemicals added by man to the Detroit River have adversely affected the health and habitats of the river's plants and animals. In 1985, as part of an Upper Great Lakes Connecting Channels Study sponsored by Environment Canada and the U.S. Environmental Protection Agency, researchers exposed healthy bacteria, plankton, benthic macroinvertebrates, fish, and birds to Detroit River sediments and sediment porewater. Negative impacts included genetic mutations in bacteria; death of macroinvertebrates; accumulation of contaminants in insects, clams, fish, and ducks; and tumor formation in fish. Field surveys showed areas of the river bottom that were otherwise suitable for habitation by a variety of plants and animals were contaminated with chlorinated hydrocarbons and heavy metals and occupied only by pollution-tolerant worms. Destruction of shoreline wetlands and disposal of sewage and toxic substances in the Detroit River have reduced habitat and conflict with basic biological processes, including the sustained production of fish and wildlife. Current regulations do not adequately control pollution loadings. However, remedial actions are being formulated by the U.S. and Canada to restore degraded benthic habitats and eliminate discharges of toxic contaminants into the Detroit River.

Hydrobiologia

Groundwater-Surface water interactions research: Past trends and future directions

Interactions between groundwater and surface water sustain groundwater-dependent ecosystems and regulate river temperature and biogeochemical cycles, amongst many other processes. These interactions occur in freshwater environments including rivers, springs, lakes, and wetlands, and in coastal environments via tidal pumping, submarine groundwater discharge, and seawater intrusion. Here, we explore groundwater-surface water interactions research using bibliometric analyses of titles, abstracts, and keywords from 20,275 journal papers published between 1970 and 2023 extracted from Scopus. Analyses show that research into groundwater-surface water interactions is highly multi-disciplinary, with growing contributions from the social and biological sciences. The number of groundwater-surface water interactions papers is rapidly increasing with over 1200 papers published per year since 2020. Drawing on our data-driven approach and expert knowledge, we synthesise current research trends and identify critical future research directions. Despite the thousands of papers on groundwater-surface water interactions, important processes are still difficult to quantify or predict at meaningful spatial scales to inform water-resources management. We see benefits in future groundwater-surface water interactions research focusing on: (1) using new technologies including internet-of-things-based sensors, uncrewed vehicles, and remote-sensing approaches for data collection to inform groundwater-surface water interactions at large scales, (2) seeking approaches to upscale site-specific findings to better inform management, and (3) continuing the movement towards multi-disciplinary investigations to better inform the understanding of groundwater-surface water interactions and processes that will enable better management outcomes.

Journal of Hydrology

Watershed influences and in-lake processes - A regional-scale approach to monitoring a water-supply reservoir, Lake Houston near Houston, Texas

Created in 1954 by an impoundment on the San Jacinto River, Lake Houston currently (2008) supplies about 20 percent of the total source water for the city of Houston. Houston historically has relied on ground water as the major source of supply. As a result of regulations to limit ground-water withdrawals because of associated land subsidence (effective in 2010), the lake will become the primary source of water supply for the city in the future. Since 1983 the U.S. Geological Survey (USGS), in cooperation with the City of Houston, has collected water-quality and lake-level data at Lake Houston, as well as discharge and intermittent water-quality data at its major inflowing tributaries. Previous studies indicate that Lake Houston is shallow, eutrophic, light limited and has a variable hydrologic regime with water residence times ranging from 12 hours to 400 days. Spring Creek, a tributary that drains the western, more urban, part of the Lake Houston watershed, contributes more sediment and nutrients than East Fork San Jacinto River, a tributary that drains the more rural, eastern part of the watershed. This fact sheet explains the importance of monitoring for management of the resource and describes ongoing research in the Lake Houston watershed by the USGS and the City.

Texas

Hydrologic exchange flows and their ecological consequences in river corridors

The actively flowing waters of streams and rivers remain in close contact with surrounding off-channel and subsurface environments. These hydrologic linkages between relatively fast flowing channel waters, with more slowly flowing waters off-channel and in the subsurface, are collectively referred to as hydrologic exchange flows (HEFs). HEFs include surface exchange with a channel’s marginal areas and subsurface flow through the streambed (hyporheic flow), as well as storm-driven bank storage and overbank flows onto floodplains. HEFs are important, not only for storing water and attenuating flood peaks, but also for their role in influencing water conservation, water quality improvement, and related outcomes for ecological values and services of aquatic ecosystems. Biogeochemical opportunities for chemical transformations are increased by HEFs as a result of the prolonged contact between flowing waters and geochemically and microbially active surfaces of sediments and vegetation. Chemical processing is intensified and water quality is often improved by removal of excess nutrients, metals, and organic contaminants from flowing waters. HEFs also are important regulators of organic matter decomposition, nutrient recycling, and stream metabolism that helps establish a balanced and resilient aquatic food web. The shallow and protected storage zones associated with HEFs support nursery and feeding areas for aquatic organisms that sustain aquatic biological diversity. Understanding of these varied roles for HEFs has been driven by the related disciplines of stream ecology, fluvial geomorphology, surface-water hydraulics, and groundwater hydrology. A current research emphasis is on the role that HEFs play in altered flow regimes, including restoration to achieve diverse goals, such as expanding aquatic habitats and managing dissolved and suspended river loads to reduce over-fertilization of coastal waters and offset wetland loss. New integrative concepts and models are emerging (eg, hydrologic connectivity) that emphasize HEF functions in river corridors over a wide range of spatial and temporal scales.

Book chapter

Experimental stocking of sport fish in the regulated Tallapoosa River to determine critical periods for recruitment

The stocking of fish in riverine systems to re-establish stocks for conservation and management appears limited to a few species and often occurs in reaches impacted by impoundments. Stocking of sport fish species such as centrarchids and ictalurids is often restricted to lentic environments, although stocking in lotic environments is feasible with variable success. R. L. Harris Dam on the Tallapoosa River, Alabama is the newest and uppermost dam facility on the river (operating since 1983); flows from the dam have been managed adaptively for multiple stakeholder objectives since 2005. One of the stakeholders’ primary objectives is to provide quality sport fisheries in the Tallapoosa River in the managed area below the dam. Historically, ictalurids and cyprinids dominated the river above Lake Martin. However, investigations after Harris Dam closed have detected a shift in community structure to domination by centrarchids. Flow management (termed the Green Plan) has been occurring since March 2005; however, sport fish populations as measured by recruitment of age-1 sport fishes below the dam has not responded adequately to flow management. The objectives of this research were to: (1) determine if stocking Channel Catfish Ictalurus punctatus and Redbreast Sunfish Lepomis auritus influences year-class strength; (2) estimate vital rates (i.e. growth, mortality, and recruitment) for Channel Catfish populations for use in an age-based population model; and (3) identify age-specific survivorship and fecundity rates contributing to Channel Catfish population stability. No marked Redbreast Sunfish were recaptured due to poor marking efficacy and therefore no further analysis was conducted with this species. Stocked Channel Catfish, similarly, were not recaptured, leaving reasons for non-recapture unknown. Matrix models exploring vital rates illustrated survival to age-1 for Channel Catfish to be less than 0.03% and that survival through ages 2 – 4 had equal contribution to overall population growth, indicating recruitment limitation may impact population size and stability. Results from this study indicate stock enhancement of sport fish populations below Harris Dam may not be an effective management technique at this time.

Alabama

Monarch habitat as a component of multifunctional landscape restoration using continuous riparian buffers

Stabilizing the eastern, migratory population of monarch butterflies (Danaus plexippus) is expected to require substantial habitat restoration on agricultural land in the core breeding area of the Upper Midwestern U.S. Previous research has considered the potential to utilize marginal land for this purpose because of its low productivity, erodible soils, and high nutrient input requirements. This strategy has strong potential for restoring milkweed (Asclepias spp.), but may be limited in terms of its ability to generate additional biophysical and socioeconomic benefits for local communities. Here we explore the possibility of restoring milkweed via the creation of continuous riparian buffer strips around rivers and streams throughout the region. We use a GIS-based analysis to consider the potential of several different buffer-width scenarios to meet milkweed restoration targets. We further estimate the ability of these habitat areas to provide additional functionality in the form of crop pollination and water quality regulation across the entire region. Finally, we estimate the conservative economic value of these ecosystem services and compare it with the lost value of crops associated with each scenario. Results suggest that riparian buffers could be used to meet 10-43% of the total milkweed restoration target of 1.3 billion new stems with moderate management. The value of water quality and pollination benefits provided by buffers is estimated to exceed costs only for our smallest buffer-width scenario, with a cost-benefit ratio of 1:2. Larger buffer widths provide more milkweed, but costs to farmers exceed the benefits we were able to quantify. The large-scale restoration of multifunctional riparian corridors thus has the potential to be a win-win scenario, adding milkweed stems while also providing a variety of other valuable benefits. This suggests the potential to leverage monarch habitat restoration efforts for the benefit of a wider variety of species and broader coalition of beneficiaries.

Iowa, Minnesota, Michigan, Wisconsin, Ohio, Indian

Calcite precipitation in Lake Powell reduces alkalinity and total salt loading to the Lower Colorado River Basin

Reservoirs can retain and transform carbon, nitrogen, phosphorus, and silica, but less is known about their effects on other biogeochemically relevant solutes. The salinization of freshwater ecosystems is a growing concern in many regions, and the role of reservoirs in salinity transport is an important research frontier. Here, we examine how a large desert southwest reservoir, Lake Powell, has altered the downstream transport of total dissolved solids (TDSs) as well as the dominant cations and anions comprising the TDS pool ( , , and Ca 2+ ). Average downstream TDS concentrations have declined significantly since river impoundment and seasonal fluctuations in TDS concentrations have become more modulated, but year to year variation in TDS concentrations has remained similar. While some of the reductions in TDS concentration can be attributed to watershed management, we find that Lake Powell retains about 10% of the TDS loaded to the system (1991 Mg TDS d −1 ). Much of this retention is occurring in the forms of calcium and bicarbonate, likely via calcite precipitation, and is equivalent to an average burial of 522 mg C m −2 d −1 , thus reducing the alkalinity of downstream water. Flow‐weighted modeling suggests that, in the absence of Lake Powell, downstream salinity limits would be surpassed at the outflow to Lake Powell 41% of the time (vs. 0% of the time currently). Understanding the dominant mechanisms regulating solute transport through the reservoir is important given the relevance for downstream drinking water and irrigation concerns, biogeochemical cycling, and the high potential for reduced flows in the future.

Arizona, Colorado, New Mexico, Utah, Wyoming

Base of principal aquifer for parts of the North Platte, South Platte, and Twin Platte Natural Resources Districts, western Nebraska

Water resources in the North and South Platte River valleys of Nebraska, including the valley of Lodgepole Creek, are critical to the social and economic health of the area, and for the recovery of threatened and endangered species in the Platte River Basin. Groundwater and surface water are heavily used resources, and uses are regulated in the study area. Irrigation is the dominant water use and, in most instances, is supplied by both groundwater and surface-water sources. The U.S. Geological Survey and its partners have collaborated to use airborne geophysical surveys for areas of the North and South Platte River valleys including the valley of Lodgepole Creek in western Nebraska. The objective of the surveys was to map the aquifers and underlying bedrock topography of selected areas to help improve the understanding of groundwater–surface-water relations to guide water-management decisions. This project was a cooperative study involving the North Platte Natural Resources District, the South Platte Natural Resources District, the Twin Platte Natural Resources District, the Conservation and Survey Division of the University of Nebraska-Lincoln, and the Nebraska Environmental Trust. This report presents the interpreted base-of-aquifer surface for part of the area consisting of the North Platte Natural Resources District, the South Platte Natural Resources District, and the Twin Platte Natural Resources District. The interpretations presented herein build on work done by previous researchers from 2008 to 2009 by incorporating additional airborne electromagnetic survey data collected in 2010 and additional test holes from separate, related studies. To make the airborne electromagnetic data useful, numerical inversion was used to convert the measured data into a depth-dependent subsurface resistivity model. An interpretation of the elevation and configuration of the base of aquifer was completed in a geographic information system that provided x, y, and z coordinates. The process of interpretation involved manually picking locations (base-of-aquifer elevations) on the displayed airborne electromagnetic-derived resistivity profile by the project geophysicist, hydrologist, and geologist. These locations, or picks, of the base-of-aquifer elevation (typically the top of the Brule Formation of the White River Group) were then stored in a georeferenced database. The pick was made by comparing the inverted airborne electromagnetic-derived resistivity profile to the lithologic descriptions and borehole geophysical logs from nearby test holes. The database of interpretive picks of the base-of-aquifer elevation was used to create primary input for interpolating the new base-of-aquifer contours. The automatically generated contours were manually adjusted based on the interpreted location of paleovalleys eroded into the base-of-aquifer surface and associated bedrock highs, many of which were unmapped before this study. When contours are overlain by the water-table surface, the saturated thickness of the aquifer can be computed, which allows an estimate of total water in storage. The contours of the base-of-aquifer surface presented in this report may be used as the lower boundary layer in existing and future groundwater-flow models. The integration of geophysical data into the contouring process facilitated a more continuous and spatially comprehensive view of the hydrogeologic framework.

Nebraska

Characterizing aquatic habitats for long‐term monitoring of a fourth‐order, regulated river in the Pacific Northwest, USA

A pragmatic approach to the long‐term monitoring of rivers leverages available information with targeted field investigations to address key uncertainties relevant to management decisions. An over‐arching management issue for many rivers is how reservoir operation affects the amount and location of in‐channel sediment and the resulting distribution of aquatic habitats. We integrate remotely acquired and field‐survey morphologic data for the Cedar River, Washington, to constitute the current status of aquatic habitats and benchmarks for long‐term monitoring that will inform streamflow management. Four key habitats (river edge, side channels, riffles, and pools) are feasible to monitor with high‐resolution aerial imagery, a longitudinal profile of the river, and a side channel inventory, but full characterization of the functional differences within these habitats requires additional information. Habitat use information such as redd surveys will continue to be important for long‐term monitoring where it cannot be inferred reliably from physical habitat characteristics.

Washington

Understanding the influence of predation by introduced fishes on juvenile salmonids in the Columbia River Basin: Closing some knowledge gaps. Interim Report of Research 2010

Project overview Predation on juvenile salmonids by fish in the Columbia River Basin (CRB) has impacted salmon survival and is a topic that has received considerable attention over the last three decades. Some of the earliest and most detailed research focused on the food habits, consumption rates, abundance, and distribution of predaceous northern pikeminnow Ptychocheilus oregonensis , smallmouth bass Micropterus dolomieu , walleye Sander vitreus , and channel catfish Ictalurus punctatus in John Day Reservoir (Beamesderfer and Rieman 1991; Poe et al. 1991; Vigg et al. 1991). This group of researchers also estimated the loss of juvenile salmonids to predation by some of these predators (Rieman et al. 1991). Since this pioneering effort, others have evaluated various aspects of predation-related mortality on juvenile salmonids in the CRB, focusing mostly on northern pikeminnow and smallmouth bass (e.g., Tabor et al. 1993; Zimmerman 1999; Naughton et al. 2004). Perhaps the most significant finding coming from this body of research was that the native northern pikeminnow was the dominant predator of juvenile salmonids in the CRB. Indeed, Beamesderfer et al. (1996) estimated that northern pikeminnow consumed about 16 million (8%) of the estimated 200 million juvenile salmonids emigrating annually in the CRB, far surpassing the consumption of smallmouth bass, walleye, and channel catfish combined. Because of this, large-scale management fisheries (i.e., the northern pikeminnow management program, or NPMP; see Rieman and Beamesderfer 1990; Beamesderfer et al. 1996) have been implemented in the CRB since 1990 to achieve a 10%–20% exploitation rate on northern pikeminnow and reduce predation on juvenile salmonids. The NPMP has been a success, resulting in up to 38% potential reductions in predation (Friesen and Ward 1999; Knutsen and Ward 1999; Ward and Zimmerman 1999;). In contrast to the NPMP, Oregon and Washington state fish and wildlife agencies manage and enhance recreational fisheries for smallmouth bass and walleye by implementing size and harvest limit regulations. Recently, many biologists and fish managers have become concerned about the impact of non-native predaceous fishes on juvenile salmonid survival. For example, Poe et al. (1994) warned that smallmouth bass, walleye, and channel catfish were expanding their populations in some areas, that these fish could be significant predators on juvenile salmonids, and that they may compete with northern pikeminnow for common prey items, resulting in higher consumption rates of salmonids by the native predator. Sanderson et al. (2009) reported that the impact of non-indigenous species (including piscivorous fishes) on salmon survival within the CRB can be severe and suggested that managing nonindigenous species may be imperative for salmon recovery. Assessing the current ecological impacts of introduced fishes throughout the CRB will fill information gaps associated with their impact on salmonid survival and contribute to the description of CRB food webs. In response to these recent concerns about the potential predatory impact of non-native piscivores on salmon survival, the Bonneville Power Administration (BPA) and the Columbia Basin Fish and Wildlife Authority (CBFWA) co-hosted a workshop to address predation on juvenile salmonids in the CRB by non-native fish (Halton 2008). The purpose of the workshop was to review, evaluate, and develop strategies to reduce predation by non-native fishes on juvenile salmonids. In the end, discussion at the workshop and at subsequent meetings considered two potential ideas to reduce predation by non-native fish on juvenile salmonids; (1) understanding the role of juvenile American shad Alosa sapidissima in the diet of non-native predators in the fall; and (2) the effects of localized, intense reductions of smallmouth bass in areas of particularly high salmonid predation. In this report, we describe initial efforts to understand the influence of juvenile American shad as a prey item for introduced predators in the middle Columbia River. Our first objective, addressed in Chapter 1, was to evaluate the efficacy of nonlethal methods to describe the physiological condition of smallmouth bass, walleye, and channel catfish from late summer through late fall. Such information will be used to understand the contribution of juvenile American shad to the energy reserves of predaceous fish prior to winter. In Chapter 2, we describe the results of some limited sampling to document the food habits of smallmouth bass, walleye, and channel catfish in three reservoirs of the middle Columbia River during late fall. Collectively, we hope to increase our understanding of the contribution of juvenile American shad to the diets of introduced predators and the contribution of this diet to their energy reserves, growth, and perhaps over-winter survival. Managers should be able to use this information for deciding whether to control the population of American shad in the CRB or for managing introduced predaceous fish in the CRB.

Oregon, Washington

The hydroclimate niche: A tool for predicting and managing riparian plant community responses to streamflow seasonality

Habitat suitability is a consequence of interacting environmental factors. In riparian ecosystems, suitable plant habitat is influenced by interactions between stream hydrology and climate, hereafter referred to as “hydroclimate”. We tested the hypothesis that hydroclimate variables would improve the fit of ecological niche models for a suite of riparian species using occurrence data from the western United States. We focus on the climate conditions (temperature, precipitation and vapor pressure deficit) during the months of lowest and highest streamflow as integrative hydroclimate metrics of resource and stress levels. We found that the inclusion of hydroclimate variables improved model fit for all species in the western USA dataset. We then tested the utility of the improved habitat suitability models by projecting them onto a regulated segment of the Colorado River to assess potential impacts of streamflow seasonality on vegetation metrics of management concern. Species frequency derived from independent survey data in the Colorado River segment was significantly higher for species with predicted suitable habitat than for species without predicted suitable habitat. Under different simulated hydrographs for the Colorado River, overall species richness was predicted to be greatest with peak streamflows during summer, and native-to-non-native species ratios were predicted to be greatest with lowest streamflows in winter. Summer high flows were particularly associated with higher predicted habitat suitability for species that have increased in cover over recent decades (e.g., Pluchea sericea, Baccharis species). We conclude that hydroclimate covariates can be useful tools for predicting how riparian vegetation communities respond to changes in the seasonal timing of low and high streamflows.

River Research and Applications

Managed aquifer recharge in snow-fed river basins: What, why and how?

What does climate change mean for snow-fed river basins? Climate change poses unique challenges in snow-fed river basins across the western United States because the majority of water supply originates as snow (Dettinger, Udall, & Georgakakos, 2015). In the Sierra Nevada, recent observations include changes in snow accumulation and snowmelt, and shifts in peak streamflow timing (Barnhart et al., 2016; Hatchett et al., 2017; Kim & Jain, 2010; McCabe, Wolock, & Valentin, 2018; Mote, Li, Lettenmaier, Xiao, & Engel, 2018). Such changes upstream alter surface water deliveries downstream, as well as groundwater recharge utilized as both primary and supplemental water supply (Godsey et al., 2014; Harpold, 2016; Jasechko et al., 2014). basin where snowmelt runoff produces substantial water supply to meet diverse agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the Carson Valley, a rich agricultural region (40,000 acres) that grows primarily alfalfa hay. The majority of irrigators rely on surface water delivered through a network of earthen ditches constructed in the mid-19th and early 20th centuries. Flow through these earthen networks and the practice of flood irrigation contribute significantly to groundwater recharge. Because no upstream surface water reservoirs exist, snowpack that accumulates through winter and melts slowly through spring has acted as a “natural” reservoir, providing ample supply through the summer irrigati agricultural, environmental and urban water demand (Figure 1). The East and West Forks join at the confluence of the Carson River near the north end of the season. Some irrigators have permitted access to supplemental groundwater that is useful during periods of drought for augmenting shortfalls in surface water delivery. Groundwater is the primary source of municipal and industrial water supply for surrounding communities (e.g., Carson City, Minden, Gardnerville, Dayton). Across the basin, water use is highly regulated through federal, tribal, state and local water-sharing agreements based on prior appropriation doctrine (Wilds, 2014). Carson River surface water allocations follow the Alpine Decree, initiated by the United States Department of Interior in 1925 and signed into law in 1980, following 55 years of litigation, to adjudicate surface water rights to individual parties (NDWP, 1999). The Alpine Decree acknowledges return flows to lower river segments, and thus each river segment is distributed autonomously. This means that the most junior water right on an upper segment can be fulfilled before considering the most senior water right on a lower segment. Ultimately, the ruling is at the discretion of the Federal Water Master to satisfy the needs of each water right Downstream of Carson Valley, surface water flows are stored in Lahontan Reservoir, the nation’s first desert reclamation project (est. 1906), where releases are managed to meet the Newland’s Project irrigation water demand and for environmental use on the Stillwater National Wildlife Refuge. Flows from the Carson River are supplemented through diversions from the Truckee River via the Truckee Canal, resulting in a trans-basin water supply system. How is the Water for the Seasons research program informing snow-fed river basin communities? In the Truckee-Carson River System, researchers and local water managers are working together to assess climate change impacts to water supply and explore how model simulations can produce useful information to support local climate adaptation. Twelve key water managers represent agricultural, environmental, urban and regulatory water-use communities, and bring to the table diverse input and perspectives on how to adapt to climate change. Hydrologists use this input to craft scenarios and simulations that meet the information needs of local water managers. Biannual workshops provide an opportunity for information exchange, where researchers and key water managers generate new knowledge of river system function. That is, researchers share results of models that examine the physical potential, and managers validate the on-the-ground potential, further informing the research process. Coincident to this research program, the region faced a prolonged drought period (2012-2016) with historically low snowpack, followed by a historic wet year (2017) that brought winter and spring flooding as a result of atmospheric river storm events (Sterle et al., 2019). For the Carson River, an important observation made by managers was that peak streamflow that had traditionally coincided with peak irrigation demands, had shifted to earlier in the spring, with summer baseflow also decreasing (Sterle & Singletary, 2017). Managers shared with researchers concerns over potential future impacts that changing snowpack will have on surface water deliveries and reliance on groundwater, as the region’s population and economy continue to grow. During workshops that occurred over this period, local water managers and researchers discussed ways to evaluate water distribution and use that honors the existing legal framework and accounts for changing snowpack regimes (amount, rain versus snow, timing). In response to managers growing interest, researchers introduced the concept of managed aquifer recharge as one potential strategy to adapt and enhance regional water sustainability. What is managed aquifer recharge? Simply stated, managed aquifer recharge is the intentional recharge of structures to spread water over agricultural lands, allowing water to naturally infiltrate into the groundwater system (Bouwer, 1999; Niswonger et al., 2017). The latter may occur during the irrigation season by applying excess water, or during the nonirrigation season when evapotranspiration losses are low. Figure 2 illustrates managed aquifer recharge in a snow-fed river basin, where streamflow generated from snowmelt runoff is diverted to agricultural lands to recharge the aquifer. Such flood irrigation practices, including water delivery through earthen ditch networks, provide incidental but significant aquifer recharge through seepage and deep drainage beneath fields (Niswonger, Allander, & Jeton, 2014). The effects of managed aquifer recharge can vary depending on the location and intensity of practice. For example, implementing managed aquifer recharge water into the groundwater system (Dillon, 2009). This differs from the incidental recharge that may occur as part of normal irrigation practices. Managed recharge may occur by injection into the aquifer through existingwells, or by using existing conveyance adjacent to/along the river’s floodplain has the potential to enhance late-season instream flows due to increased return flows, resulting in greater downstream deliveries as well as improving ecological conditions (Niswonger et al., 2017). Implementing managed aquifer recharge away from the river’s floodplain has the potential to enhance groundwater supply which is increasingly relied upon during surface water shortage (Green et al., 2011), by storing water in available aquifer space in the deep aquifer. At the basin scale, managed aquifer recharge may lead to regional groundwater sustainability. Is the Carson River Basin a candidate for managed aquifer recharge? The physical limitations to implementing managed aquifer recharge in the Carson River Basin hinges on three key factors. The first factor relates to the physical connectivity between rivers and streams, and the irrigation delivery network of canals and ditches that divert water to agricultural lands (Niswonger et al., 2017). In the Carson River Basin the mechanisms for getting water to fields is already in place. Thus, intentionally routing high flows that occur in wet years through this system during the nonirrigation season would mimic what occurs naturally during the irrigation season. The second factor relates to the occurrence of atmospheric river storm events that deliver large amounts of precipitation to the region, much greater than average (Dettinger et al., 2015). With increased frequency and intensity projected under a warmer climate, such events have the potential to produce excess water over short periods of time that could be stored through mechanisms such as managed aquifer recharge (Niswonger et al., 2017). The third factor relates to the change in snowpack accumulation and shifts in snowmelt timing observed elsewhere in the Sierra Nevada (e.g., Godsey et al., 2014; Mote et al., 2018). Having a mechanism in place to maximize use of earlier snowmelt and shifts in streamflow timing could be advantageous and enhance regional groundwater sustainability. As part of the Water for the Seasons study, a hypothetical scenario was developed to determine the feasibility of managed aquifer recharge in the Carson River Basin, assuming no legal constraints. During “wet” or above-average water years, irrigators in the Upper Carson Valley would divert high flows and spread water over agricultural lands during the nonirrigation season. Assuming flows are abundant and “early,” diversions would begin prior to the growing season, when water would otherwise flow downstream to the Lahontan Reservoir. During “dry” years or drought periods, when surface water availability is less, irrigators in the Upper Carson Valley could augment surface water shortages with groundwater, allowing available surface water flows to flow downstream. Researchers hypothesize the amount of water has the potential to boost baseflow to support environmental instream flows, for example. What concerns have local water managers expressed? The hypothetical managed aquifer recharge scenario was presented to water managers in a workshop setting. Presentations included an overview of the hydrologic and operations modeling tools used to evaluate managed aquifer recharge by simulating the timing and distribution of water in the upper watershed. Specifically, in the Upper Carson Valley, a hydrologic model (GSFLOW) simulates streamflow driven by snowmelt, and surface and groundwater interactions, while a river basin operations model (MODSIM) allocates water according to the prior appropriation doctrine in the basin (see Figure 1) (Morway, Niswonger, & Triana, 2016; Niswonger et al., 2017). Integrating these two modeling tools advances the evaluation of climate impacts on water availability in agricultural communities and the resulting impacts of alternative management strategies (Morway et al., 2016). When asked about the viability of managed aquifer recharge, the perspectives of 11 managers varied (Figure 3). Regardless of rating, all managers questioned, “How would thisreally work?” Several managers questioned whether models could simulate the connectivity between surface and groundwater to accurately quantify changes to instream flow. Others raised concerns that managed aquifer recharge violates the Alpine Decree and Nevada Water Law. Still others requested researchers consider alternatives that could work within the confines of current (2019) water law. Managers posed specific questions that should be considered when evaluating the potential for managed aquifer recharge. For example: What triggers implementation of managed aquifer recharge?How “high” or “low” must annual flows be to initiate managed aquifer recharge? When in the water year is this determined? Where exactly in the Carson Valley is managed aquiferre charge possible? For example, what areas away from the floodplain could ensure long-term storage? Can model simulations quantify potential benefits and consequences system-wide?Would this information support decision-making, such as permitting of additional supplemental groundwater rights? How are researchers going to address managers’ research questions? Managers’ perspectives help to validate the on-the-ground potential of particular strategies and further refine alternative management scenarios. For example, understanding that managers are concerned with oversaturated fields helps researchers to define conditions in the model, such as what defines a wet versus “too” wet type of year and where to focus irrigation for managed aquifer recharge. Incorporating these nuances provides more accurate quantification of the potential benefits and consequences for users across the basin. Modeling is underway to simulate managed aquifer recharge scenarios and explore basin-wide implications. Researchers and local water managers will convene to collaboratively review results and further assess whether this or other strategies could work under the confines of existing water law. Subsequent fact sheets will present these findings.

Nevada

Historical changes to channel planform and bed elevations downstream from dams along Fall Creek and Middle Fork Willamette River, Oregon, 1926–2016

Operation of large, multipurpose dams within the Middle Fork Willamette River Basin, Oregon, including the Fall Creek sub-basin, have disrupted natural streamflow and sediment transport regimes and fish passage along the river corridors. Documenting channel morphology, including channel planform, landforms, vegetation cover, and river channel elevations at multiple points in time spanning the 20th and early 21st centuries, is useful for characterizing net changes occurring in response to construction and operation of these dams. The U.S. Geological Survey assessed historical channel changes that occurred within the past century in response to the construction and operation of flood-control dams by evaluating planimetric datasets (from 1926 plan and profile surveys and 1936 and 2016 aerial photographs) and elevation datasets (from 1926 plan and profile surveys and 2015 light detection and ranging [lidar]). This study specifically focuses on the lower 27.3 kilometers (km) of the Middle Fork Willamette River and the lower 11.5 km of Fall Creek, or the reaches downstream from the U.S. Army Corps of Engineers Dexter Dam and Fall Creek Dam, to the confluence with Coast Fork Willamette River. Altogether, compilation and evaluation of datasets for Fall Creek and the Middle Fork Willamette River downstream from the dams provide a foundation for understanding: channel morphology and patterns of geomorphic stability prior to dam construction in 1926 and 1936; channel morphology and patterns of lateral and vertical stability of the early 21st century that reflect present-day (post-dam) streamflow and sediment regimes as of 2015–16; and geomorphic transformations of the river corridors in the decades following dam construction, including changes in planform and bed elevation (determined from water-surface elevations). Findings from this study can be used to provide historical and geomorphic context for geomorphic responses to deep reservoir drawdowns on Fall Creek Lake that mobilize reservoir sediment downstream and informing other restoration and river-management activities; this report summarizes one component of a larger research effort to document the magnitude and spatial distribution of geomorphic responses to sediment releases from draining Fall Creek Lake. As of 2016, the modern Fall Creek flows through a narrow, semi-alluvial channel that efficiently conveys water and sediment at typical streamflows downstream from Fall Creek Dam. This channel planform, including the positions and distributions of bars and secondary water features (side channels, alcoves, and ponds), generally reflects pre-dam conditions in 1936, suggesting relatively modest morphological adjustments resulted from reductions in sediment supply and alterations to peak streamflow after dam construction. The most substantial morphologic change detected over this period was a reduction in unvegetated gravel bars. As of 2016, the modern Middle Fork Willamette River is a large, gravel-bed river that, despite substantial transformations in channel morphology and reduction in lateral dynamism following the construction of multiple upstream dams, remains a dominantly alluvial river. Prior to dam construction in 1926 and 1936, the reaches of the Middle Fork Willamette River downstream from Dexter Dam were laterally active with multi-thread and single-thread channels flanked by large, shifting gravel bars. Since streamflow regulation and other channel modifications in the mid-20th century, these reaches have become less laterally active and encompass a narrower floodplain corridor as abundant former gravel bars were converted to low-elevation floodplains colonized by young, dense forests. The Middle Fork Willamette River downstream from Dexter Dam has remained mostly vertically stable between 1926 and 2015, although localized segments possibly decreased in elevation as much as 2.3 meters.

Oregon

Characterizing operational signatures of reservoirs with the SWOT satellite by comparing natural lake and reservoir dynamics

Due to a lack of management operations data, hydrological models may represent reservoirs as natural lakes, leading to poor discharge predictions in regulated basins. To parse seasonal operational signatures, we compare the dynamics of natural lake and reservoir systems across North America using Surface Water and Ocean Topography (SWOT) satellite observations and derived discharge estimates. Overall, reservoirs and their adjacent river reaches exhibit significantly greater variability (in standard deviation) than their natural counterparts across almost all SWOT observed (e.g. water surface elevation) and inferred (e.g. discharge) variables. Natural lakes show strong same-day correlations between inflow and outflow discharge (median Spearman R = 0.8), whereas 76% of reservoirs exhibit maximum correlation when outflow is lagged, suggesting operations buffer seasonal flow variability. Our findings indicate operations not only affect reservoir dynamics themselves but also have upstream and downstream consequences, which, when integrated into models, will offer more realistic hydrologic conditions.

Environmental Research Letters

Protocol for Monitoring Fish Assemblages in Pacific Northwest National Parks

Rivers and streams that drain from Olympic, Mount Rainier, and North Cascades National Parks are among the most protected corridors in the lower 48 States, and represent some of the largest tracts of contiguous, undisturbed habitat throughout the range of several key fish species of the Pacific Northwest. These watersheds are of high regional importance as freshwater habitat sanctuaries for native fish, where habitat conditions are characterized as having little to no disturbance from development, channelization, impervious surfaces, roads, diversions, or hydroelectric projects. Fishery resources are of high ecological and cultural importance in Pacific Northwest National Parks, and significantly contribute to economically important recreational, commercial, and tribal fisheries. This protocol describes procedures to monitor trends in fish assemblages, fish abundance, and water temperature in eight rivers and five wadeable streams in Olympic National Park during summer months, and is based on 4 years of field testing. Fish assemblages link freshwater, marine, and terrestrial ecosystems. They also serve as focal resources of national parks and are excellent indicators of ecological conditions of rivers and streams. Despite the vital importance of native anadromous and resident fish populations, there is no existing monitoring program for fish assemblages in the North Coast and Cascades Network. Specific monitoring objectives of this protocol are to determine seasonal and annual trends in: (1) fish species composition, (2) timing of migration of adult fish, (3) relative abundance, (4) age and size structure, (5) extent of non-native and hatchery fish, and (6) water temperature. To detect seasonal and annual trends in fish assemblages in reference sites, we rely on repeated and consistent annual sampling at each monitoring site. The general rationale for the repeated sampling of reference sites is to ensure that we account for the high interannual variability in fish movements and abundances in rivers. One underlying assumption is that the monitoring program is designed in perpetuity, and consequently our capability to detect trends substantially increases with time. The protocol describes sampling designs, methods, training procedures, safety considerations, data management, data analysis, and reporting. The allocation of sampling effort represents a balance between ecological considerations, a sound monitoring approach, and practical limitations caused by logistical constraints and a limited annual budget of $55,000. The widespread declines of native fish species in western North America highlights the importance and urgency of understanding trends in fish assemblages from undisturbed habitats. Seasonal and annual trends in fish assemblages will provide insights at the individual, population, and assemblage level. This protocol will allow managers to detect increases and decreases in abundance of priority management species, and occurrence of non-native, hatchery, and federally listed fish. The detection of trends in fish assemblages will allow for specific management actions that may include: implementation of more appropriate fishing regulations, evaluation of existing hatchery releases, control of non-native fish species, and prioritization of habitat restoration projects. Dissemination and communication of scientific findings on North Coast and Cascades Network fish assemblages will be a core product of this protocol, which will have much relevance to decision makers, park visitors, researchers, and educators.

Techniques and Methods

Design of a sediment-monitoring gaging network on ephemeral tributaries of the Colorado River in Glen, Marble, and Grand Canyons, Arizona

Management of sediment in rivers downstream from dams requires knowledge of both the sediment supply and downstream sediment transport. In some dam-regulated rivers, the amount of sediment supplied by easily measured major tributaries may overwhelm the amount of sediment supplied by the more difficult to measure lesser tributaries. In this first class of rivers, managers need only know the amount of sediment supplied by these major tributaries. However, in other regulated rivers, the cumulative amount of sediment supplied by the lesser tributaries may approach the total supplied by the major tributaries. The Colorado River downstream from Glen Canyon has been hypothesized to be one such river. If this is correct, then management of sediment in the Colorado River in the part of Glen Canyon National Recreation Area downstream from the dam and in Grand Canyon National Park may require knowledge of the sediment supply from all tributaries. Although two major tributaries, the Paria and Little Colorado Rivers, are well documented as the largest two suppliers of sediment to the Colorado River downstream from Glen Canyon Dam, the contributions of sediment supplied by the ephemeral lesser tributaries of the Colorado River in the lowermost Glen Canyon, and Marble and Grand Canyons are much less constrained. Previous studies have estimated amounts of sediment supplied by these tributaries ranging from very little to almost as much as the amount supplied by the Paria River. Because none of these previous studies relied on direct measurement of sediment transport in any of the ephemeral tributaries in Glen, Marble, or Grand Canyons, there may be significant errors in the magnitudes of sediment supplies estimated during these studies. To reduce the uncertainty in the sediment supply by better constraining the sediment yield of the ephemeral lesser tributaries, the U.S. Geological Survey Grand Canyon Monitoring and Research Center established eight sediment-monitoring gaging stations beginning in 2000 on the larger of the previously ungaged tributaries of the Colorado River downstream from Glen Canyon Dam. The sediment-monitoring gaging stations consist of a downward-looking stage sensor and passive suspended-sediment samplers. Two stations are equipped with automatic pump samplers to collect suspended-sediment samples during flood events. Directly measuring discharge and collecting suspended-sediment samples in these remote ephemeral streams during significant sediment-transporting events is nearly impossible; most significant run-off events are short-duration events (lasting minutes to hours) associated with summer thunderstorms. As the remote locations and short duration of these floods make it prohibitively expensive, if not impossible, to directly measure the discharge of water or collect traditional depth-integrated suspended-sediment samples, a method of calculating sediment loads was developed that includes documentation of stream stages by field instrumentation, modeling of discharges associated with these stages, and automatic suspended-sediment measurements. The approach developed is as follows (1) survey and model flood high-water marks using a two-dimensional hydrodynamic model, (2) create a stage-discharge relation for each site by combining the modeled flood flows with the measured stage record, (3) calculate the discharge record for each site using the stage-discharge relation and the measured stage record, and (4) calculate the instantaneous and cumulative sediment loads using the discharge record and suspended-sediment concentrations measured from samples collected with passive US U-59 samplers and ISCO TM pump samplers. This paper presents the design of the gaging network and briefly describes the methods used to calculate discharge and sediment loads. The design and methods herein can easily be used at other remote locations where discharge and sediment loads are required.

Arizona

Estimation of unaltered daily mean streamflow at ungaged streams of New York, excluding Long Island, water years 1961-2010

The lakes, rivers, and streams of New York State provide an essential water resource for the State. The information provided by time series hydrologic data is essential to understanding ways to promote healthy instream ecology and to strengthen the scientific basis for sound water management decision making in New York. The U.S. Geological Survey, in cooperation with The Nature Conservancy and the New York State Energy Research and Development Authority, has developed the New York Streamflow Estimation Tool to estimate a daily mean hydrograph for the period from October 1, 1960, to September 30, 2010, at ungaged locations across the State. The New York Streamflow Estimation Tool produces a complete estimated daily mean time series from which daily flow statistics can be estimated. In addition, the New York Streamflow Estimation Tool provides a means for quantitative flow assessments at ungaged locations that can be used to address the objectives of the Clean Water Act—to restore and maintain the chemical, physical, and biological integrity of the Nation’s waters. The New York Streamflow Estimation Tool uses data from the U.S. Geological Survey streamflow network for selected streamgages in New York (excluding Long Island) and surrounding States with shared hydrologic boundaries, and physical and climate basin characteristics to estimate the natural unaltered streamflow at ungaged stream locations. The unaltered streamflow is representative of flows that are minimally altered by regulation, diversion, or mining, and other anthropogenic activities. With the streamflow network data, flow-duration exceedance probability equations were developed to estimate unaltered streamflow exceedance probabilities at an ungaged location using a methodology that equates streamflow as a percentile from a flow-duration curve for a particular day at a hydrologically similar reference streamgage with streamflow as a percentile from the flow-duration curve for the same day at an ungaged location. The reference streamgage is selected using map correlation, a geostatistical method in which variogram models are developed that correlate streamflow at one streamgage with streamflows at all other locations in the study area. Regression equations used to predict 17 flow-duration exceedance probabilities were developed to estimate the flow-duration curves at ungaged locations for New York using geographic information system-derived basin characteristics. A graphical user interface, with an integrated spreadsheet summary report, has been developed to estimate and display the daily mean streamflows and statistics and to evaluate different water management or water withdrawal scenarios with the estimated monthly data. This package of regression equations, U.S. Geological Survey streamgage data, and spreadsheet application produces an interactive tool to estimate an unaltered daily streamflow hydrograph and streamflow statistics at ungaged sites in New York. Among other uses, the New York Streamflow Estimation Tool can assist water managers with permitting water withdrawals, implementing habitat protection, estimating contaminant loads, or determining the potential affect from chemical spills.

New York

Understanding the influence of nutrients on stream ecosystems in agricultural landscapes

Sustaining the quality of the Nation’s water resources and the health of our diverse ecosystems depends on the availability of sound water-resources data and information to develop effective, science-based policies. Effective management of water resources also brings more certainty and efficiency to important economic sectors. Taken together, these actions lead to immediate and long-term economic, social, and environmental benefits that make a difference to the lives of the almost 400 million people projected to live in the United States by 2050. In 1991, Congress established the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) to address where, when, why, and how the Nation’s water quality has changed, or is likely to change in the future, in response to human activities and natural factors. Since then, NAWQA has been a leading source of scientific data and knowledge used by national, regional, State, and local agencies to develop science-based policies and management strategies to improve and protect water resources used for drinking water, recreation, irrigation, energy development, and ecosystem needs ( https://water.usgs.gov/nawqa/applications/ ). Plans for the third decade of NAWQA (2013–23) address priority water-quality issues and science needs identified by NAWQA stakeholders, such as the Advisory Committee on Water Information and the National Research Council, and are designed to meet increasing challenges related to population growth, increasing needs for clean water, and changing land-use and weather patterns. Excess nutrients are a pervasive problem of streams, lakes, and coastal waters. The current report, “The Quality of Our Nation’s Waters—Understanding the Effects of Nutrients on Stream Ecosystems in Agricultural Landscapes,” presents a summary of results from USGS investigations conducted from 2003 to 2011 on processes that influence nutrients and how nutrient enrichment can alter biological components of agricultural streams. This study included collecting data from 232 sites distributed among eight study areas. This report summarizes findings on processes that influence nutrients and how nutrient enrichment can alter biological communities in agricultural streams. These findings are relevant to local, State, regional, and national decision-makers involved in efforts to (1) better understand the influence of nutrients on agricultural streams, (2) develop nutrient criteria for streams and rivers, (3) reduce nutrients to streams and downstream receiving waters, and (4) develop tools for tracking nutrient and biological conditions following nutrient reduction strategies. All NAWQA reports are available online at https://water.usgs.gov/nawqa/bib/ . We hope this publication will provide you with insights and information to meet your water-resource needs and will foster increased citizen awareness and involvement in the protection and restoration of our Nation’s waters. The information in this report is intended primarily for those interested or involved in resource management and protection, conservation, regulation, and policymaking at the regional and national levels.

Central Columbia-Yakima River Basins, Great River