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At least 73 records · Page 4Linked to original sources
USGS2022

Integrated geochemical approach to determine the source of methane in gas hydrate from Green Canyon Block 955 in the Gulf of Mexico

Massive volumes of gas are sequestered within gas hydrate in subsurface marine sediments in the Gulf of Mexico. Methane associated with gas hydrate is a potentially important economic resource and a significant reservoir of carbon within the global carbon cycle. Nevertheless, uncertainties remain about the genetic source (e.g., microbial, thermogenic) and possible migration history of natural gas incorporated into hydrate. Previous studies have primarily used the hydrocarbon molecular (CH 4 /C 2 H 6 +) and isotopic (δ 13 C-CH 4 , δ 2 H-CH 4 ) compositions of natural gas to address these uncertainties. However, hydrocarbon tracers are altered by mixing, oxidation, secondary methanogenesis, or fluid migration, which presents challenges when deciphering the mechanisms responsible for methane formation and accumulation. To evaluate the genetic source of natural gases from Green Canyon Block 955 (GC 955), east of the Sigsbee escarpment, we collected and analyzed samples from the first pressurized hydrate-bearing sediment cores collected from a coarse-grained hydrate reservoir in the Gulf of Mexico. Gas samples were analyzed for hydrocarbon gas (C 1 –C 5 ), major gas (e.g., N 2 , CO 2 ), and noble gas (He-Xe) abundance and isotopic (e.g., δ 13 C-CH 4 , δ 2 H-CH 4 , δ 13 C-CO 2 , δ 15 N-N 2 , 3 He/ 4 He, 4 He/ 20 Ne) compositions. We determined that natural gas in hydrates from this location are predominantly of primary microbial origin (conservatively at least 76%) and are formed by the hydrogenotrophic (CO 2 reduction) methanogenesis pathway. We also note increased thermogenic proportions (∼6%) in a hydrate-bearing layer below the main hydrate-bearing interval (separated by a 5-m water-bearing layer). Our results suggest that microbial methane may be abundant below the base of gas hydrate stability at GC 955.

Louisiana↗
USGS2006

Microsatellite variation reveals weak genetic structure and retention of genetic variability in threatened Chinook salmon (Oncorhynchus tshawytscha) within a Snake River watershed

Pacific salmon ( Oncorhynchus spp.) have been central to the development of management concepts associated with evolutionarily significant units (ESUs), yet there are still relatively few studies of genetic diversity within threatened and endangered ESUs for salmon or other species. We analyzed genetic variation at 10 microsatellite loci to evaluate spatial population structure and genetic variability in indigenous Chinook salmon ( Oncorhynchus tshawytscha ) across a large wilderness basin within a Snake River ESU. Despite dramatic 20th century declines in abundance, these populations retained robust levels of genetic variability. No significant genetic bottlenecks were found, although the bottleneck metric (M ratio) was significantly correlated with average population size and variability. Weak but significant genetic structure existed among tributaries despite evidence of high levels of gene flow, with the strongest genetic differentiation mirroring the physical segregation of fish from two sub-basins. Despite the more recent colonization of one sub-basin and differences between sub-basins in the natural level of fragmentation, gene diversity and genetic differentiation were similar between sub-basins. Various factors, such as the (unknown) genetic contribution of precocial males, genetic compensation, lack of hatchery influence, and high levels of current gene flow may have contributed to the persistence of genetic variability in this system in spite of historical declines. This unique study of indigenous Chinook salmon underscores the importance of maintaining natural populations in interconnected and complex habitats to minimize losses of genetic diversity within ESUs.

Idaho↗
USGS2023

Parentage-based tagging using mothers balances accuracy and cost for discriminating between natural and stocked recruitment for inland fisheries

Hatchery programmes are frequently used to supplement inland fisheries, yet achieving successful management outcomes often requires information on stocked versus naturally reproduced fish abundance. Parentage-based tagging – genetically assigning offspring to their parents – has potential to be an effective approach for distinguishing stocked and naturally reproduced fish. However, several challenges may limit its application to inland fisheries, including genetic relatedness among populations that can affect identification accuracy and high costs of genotyping large broodstocks. Here, we demonstrate the efficacy of parentage-based tagging based on broodmothers in the Lake Ontario Chinook Salmon fishery, which uses thousands of broodparents and has potential for substantial relatedness between stocked and naturally reproduced fish. Restricting parent sampling to broodmothers reduced costs by two-thirds, was logistically pragmatic, and achieved >95% accuracy in distinguishing stocked from naturally reproduced salmon. Combined, these results highlight the potential wide applicability of parentage-based tagging for assessing stocking programmes in inland waters.

New York, Ontario↗
USGS2011

Genetic and environmental influences on leaf phenology and cold hardiness of native and introduced riparian trees

To explore the roles of plasticity and genetic variation in the response to spatial and temporal climate variation, we established a common garden consisting of paired collections of native and introduced riparian trees sampled along a latitudinal gradient. The garden in Fort Collins, Colorado (latitude 40.6°N), included 681 native plains cottonwood ( Populus deltoides subsp. monilifera ) and introduced saltcedar ( Tamarix ramosissima , T. chinensis and hybrids) collected from 15 sites at 29.2–47.6°N in the central United States. In the common garden both species showed latitudinal variation in fall, but not spring, leaf phenology, suggesting that the latitudinal gradient in fall phenology observed in the field results at least in part from inherited variation in the critical photoperiod, while the latitudinal gradient in spring phenology observed in the field is largely a plastic response to the temperature gradient. Populations from higher latitudes exhibited earlier bud set and leaf senescence. Cold hardiness varied latitudinally in both fall and spring for both species. For cottonwood, cold hardiness began earlier and ended later in northern than in southern populations. For saltcedar northern populations were hardier throughout the cold season than southern populations. Although cottonwood was hardier than saltcedar in midwinter, the reverse was true in late fall and early spring. The latitudinal variation in fall phenology and cold hardiness of saltcedar appears to have developed as a result of multiple introductions of genetically distinct populations, hybridization and natural selection in the 150 years since introduction.

International Journal of Biometeorology↗
USGS2011

Conservation genetics of evolutionary lineages of the endangered mountain yellow-legged frog, Rana muscosa (Amphibia: Ranidae), in southern California

Severe population declines led to the listing of southern California Rana muscosa (Ranidae) as endangered in 2002. Nine small populations inhabit watersheds in three isolated mountain ranges, the San Gabriel, San Bernardino and San Jacinto. One population from the Dark Canyon tributary in the San Jacinto Mountains has been used to establish a captive breeding population at the San Diego Zoo Institute for Conservation Research. Because these populations may still be declining, it is critical to gather information on how genetic variation is structured in these populations and what historical inter-population connectivity existed between populations. Additionally, it is not clear whether these populations are rapidly losing genetic diversity due to population bottlenecks. Using mitochondrial and microsatellite data, we examine patterns of genetic variation in southern California and one of the last remaining populations of R. muscosa in the southern Sierra Nevada. We find low levels of genetic variation within each population and evidence of genetic bottlenecks. Additionally, substantial population structure is evident, suggesting a high degree of historical isolation within and between mountain ranges. Based on estimates from a multi-population isolation with migration analysis, these populations diversified during glacial episodes of the Pleistocene, with little gene flow during population divergence. Our data demonstrate that unique evolutionary lineages of R. muscosa occupy each mountain range in southern California and should be managed separately. The captive breeding program at Dark Canyon is promising, although mitigating the loss of neutral genetic diversity relative to the natural population might require additional breeding frogs.

California↗
USGS2025

Genetic analysis of Missouri’s Topeka Shiners with implications for the propagation of understudied small-bodied freshwater fishes

Objective Best practices for conservation hatcheries to conserve genetic diversity and minimize adaptation to captivity have been established for decades, but how to apply them is not clear in every circumstance. As a growing number of aquatic species are propagated in captive settings, addressing the fit of these practices to each system will help managers operate optimally while conserving hatchery resources. Small-bodied freshwater fish present a unique set of traits compared with species that are typically considered for propagation (i.e., salmonids), including a patchy distribution within a watercourse. We examine the propagation and reintroduction program that supports the Topeka Shiner Miniellus topeka , an endangered minnow in the Midwestern USA. Methods We genotyped shiners from groups with different histories (two reintroduced, three captive, and two remnant populations) at 11 microsatellite loci and compared genetic diversity, genetic structure, effective population size, and evidence of population bottlenecks. We also looked at the breeding structure by genetically assigning hatchery-reared young ( n = 148) to candidate parents. Results We documented high levels of genetic structure among the two natural populations in our study. We also noted lower diversity and evidence of bottlenecks in hatchery-reared groups. However, hatcheries may support sufficient (>50) effective population sizes with minimal space. Conclusions Hatcheries may avoid bottlenecks in other small-bodied freshwater fish by collecting wild fish from a broad area and frequently incorporating them into the captive population. Within the hatchery, we emphasize the need to reduce generational overlap by stocking all production fish and/or subdividing the captive populations.

Missouri↗
USGS2011

Molecular genetics at the Fort Collins Science Center

The Fort Collins Science Center operates a molecular genetic and systematics research facility (FORT Molecular Ecology Laboratory) that uses molecular genetic tools to provide genetic information needed to inform natural resource management decisions. For many wildlife species, the data generated have become increasingly important in the development of their long-term management strategies, leading to a better understanding of species diversity, population dynamics and ecology, and future conservation and management needs. The Molecular Ecology Lab serves Federal research and resource management agencies by developing scientifically rigorous research programs using nuclear, mitochondrial and chloroplast DNA to help address many of today's conservation biology and natural resource management issues.

Fact Sheet↗
USGS2014

Bull trout in the Boundary System: managing connectivity and the feasibility of a reintroduction in the lower Pend Oreille River, northeastern Washington

Many of the World’s rivers are influenced by large dams (>15 m high) most of which have fragmented formerly continuous habitats, and significantly altered fish passage, natural flow, temperature, and sediment fluxes (Nilsson and others, 2005; Arthington, 2012; Liermann and others, 2012). In the Pacific Northwest, dams on major rivers have been a major focus for fishery managers, primarily in regard to passage of anadromous salmonids (principally Pacific salmon and steelhead trout [ Oncorhynchus mykiss ], for example, Ferguson and others, 2011), but more recently other species, such as Pacific lamprey ( Entosphenus tridentatus ) and resident (non-anadromous) salmonids, are receiving more attention (Neraas and Spruell, 2001; Moser and others, 2002; Muhlfeld and others, 2012). In the case of resident salmonids, fish can adopt a wide range of migratory behaviors that often bring them into mainstem rivers where they can come into direct contact with large dams. When this occurs, some of the most important direct effects of dams on salmonids include barriers to upstream and downstream movement and mortality associated with entrainment within the dam or spill over dams. Biologically, these direct impacts can lead to (1) disruption of natural historical (pre-dam) genetic and demographic connectivity among local populations, (2) loss of access to historically used migratory destinations, (3) loss of individuals to the population through mortality associated with entrainment. In this report, we address these issues for the case of Boundary Dam, located immediately south of the Canadian border on the lower Pend Oreille River in northeastern Washington (fig. 1). Specifically, we addressed the following objectives: Evaluate the justification for bull trout ( Salvelinus confluentus ) passing over Boundary Dam in the context of likely historical patterns of gene flow that occurred prior to dam construction, current patterns of movement, and status of existing populations. Assess the role of passage over Boundary Dam, in the context of other factors in the system that may influence the feasibility of establishing a self-sustaining bull trout population in the Boundary system.

Washington↗
USGS2012

Genetic and environmental influences on cold hardiness of native and introduced riparian trees

To explore latitudinal genetic variation in cold hardiness and leaf phenology, we planted a common garden of paired collections of native and introduced riparian trees sampled along a latitudinal gradient. The garden in Fort Collins, Colorado (latitude 40.6°N), included 681 native plains cottonwood (Populus deltoides subsp. monilifera) and introduced saltcedar (Tamarix ramosissima, T. chinensis, and hybrids) collected from 15 sites from 29.2 to 47.6°N in the central United States. In the common garden, both species showed latitudinal variation in fall, but not spring, leaf phenology. This suggests that latitudinal gradient field observations in fall phenology are a result, at least in part, of the inherited variation in the critical photoperiod. Conversely, the latitudinal gradient field observations in spring phenology are largely a plastic response to the temperature gradient. Populations from higher latitudes exhibited earlier bud set and leaf senescence. Cold hardiness varied latitudinally in both fall and spring for both species. Although cottonwood was hardier than saltcedar in midwinter, the reverse was true in late fall and early spring. The latitudinal variation in fall phenology and cold hardiness of saltcedar appears to have developed as a result of multiple introductions of genetically distinct populations, hybridization, and natural selection in the 150 years since introduction.

Conference Paper↗
USGS2022

Average kinship within bighorn sheep populations is associated with connectivity, augmentation, and bottlenecks

Understanding the influence of population attributes on genetic diversity is important to advancement of biological conservation. Because bighorn sheep ( Ovis canadensis ) populations vary in size and management history, the species provides a unique opportunity to observe the response of average pairwise kinship, inversely related to genetic diversity, to a spectrum of natural and management influences. We estimated average pairwise kinship of bighorn sheep herds and compared estimates with population origin (native/indigenous/extant or reintroduced), historical minimum count, connectivity, and augmentation history, to determine which predictors were the most important. We evaluated 488 bighorn sheep from 19 wild populations with past minimum counts of 16–562 animals, including native and reintroduced populations that received 0–165 animals in augmentations. Using the Illumina High Density Ovine array, we generated a dataset of 7728 single nucleotide polymorphisms and calculated average pairwise kinship for each population. Multiple linear regression analysis determined that connectivity between populations via dispersal, greater number of animals received in augmentations, and greater minimum count were correlated with lower average pairwise kinship at the population level, and whether the population was extant or reintroduced was less important. Thus, our results indicated that genetic isolation of populations can result in increased levels of inbreeding. By determining that natural and human-assisted gene flow were likely the most important influences of average pairwise kinship at the population level, this study can serve as a benchmark for future management of bighorn sheep populations and aid in identifying populations of genetic concern to define priorities for conservation of wild populations.

Montana, Wyoming↗
USGS2020

The historical context of contemporary climatic adaptation: A case study in the climatically dynamic and environmentally complex southwestern United States

The process of adaptation can be highly dependent upon historical and contemporary factors, especially in environmentally and topographically complex regions affected by Pleistocene glaciations. Here, we investigate Hilaria jamesii (Poaceae), a dryland C 4 graminoid, to test how patterns of adaptive genetic variation are linked to its glacial and post‐glacial history. We show that the species persisted in a single, southern refugium during the last glacial period and subsequently migrated throughout its current distribution concurrent with post‐glacial warming. The species’ putative adaptive genetic variation correlates with climatic gradients (e.g. monsoon precipitation and mean diurnal temperature range) that covary with the species’ probable route of demographic expansion. The short timescale and multiple climatic dimensions of adaptation imply that natural selection acted primarily upon standing genetic variation. These findings suggest that restoration and conservation practices should prioritize the maintenance of standing genetic variation to ensure that species have the capacity to respond to future environmental changes.

Arizona, California Colorado, Nevada, New Mexico, ↗
USGS1993

The marine snail, Cerithidea californica, matures at smaller sizes where parasitism is high

I investigated life-history and parasitism in the salt marsh snail, Cerithidea californica. Latitude and growing conditions were important factors determining maturation size. After accounting for environmental variation, there was a negative association between the maturation size of snails and the prevalence of parasitic castration by larval trematodes. As predicted by life-history theory, this may represent an adaptation against parasitism that is similar to previous observations of life-history adaptations in species subject to predation or disturbance. However, it was unclear whether this adaptation was due to phenotypic plasticity or genetic differences among populations resulting from natural selection so I conducted a reciprocal transplant between sites with high and low prevalence and found source population differences in maturation size. It appears, therefore, that the life-history differences between these populations are at least partially genetic or may represent an adaptive developmental switch that was initiated prior to the transplant.

Oikos↗
USGS2006

Understanding the genetic effects of recent habitat fragmentation in the context of evolutionary history: Phylogeography and landscape genetics of a southern California endemic Jerusalem cricket (Orthoptera: Stenopelmatidae: Stenopelmatus)

Habitat loss and fragmentation due to urbanization are the most pervasive threats to biodiversity in southern California. Loss of habitat and fragmentation can lower migration rates and genetic connectivity among remaining populations of native species, reducing genetic variability and increasing extinction risk. However, it may be difficult to separate the effects of recent anthropogenic fragmentation from the genetic signature of prehistoric fragmentation due to previous natural geological and climatic changes. To address these challenges, we examined the phylogenetic and population genetic structure of a flightless insect endemic to cismontane southern California, Stenopelmatus 'mahogani' (Orthoptera: Stenopelmatidae). Analyses of mitochondrial DNA sequence data suggest that diversification across southern California began during the Pleistocene, with most haplotypes currently restricted to a single population. Patterns of genetic divergence correlate with contemporary urbanization, even after correcting for (geographical information system) GIS-based reconstructions of fragmentation during the Pleistocene. Theoretical simulations confirm that contemporary patterns of genetic structure could be produced by recent urban fragmentation using biologically reasonable assumptions about model parameters. Diversity within populations was positively correlated with current fragment size, but not prehistoric fragment size, suggesting that the effects of increased drift following anthropogenic fragmentation are already being seen. Loss of genetic connectivity and diversity can hinder a population's ability to adapt to ecological perturbations commonly associated with urbanization, such as habitat degradation, climatic changes and introduced species. Consequently, our results underscore the importance of preserving and restoring landscape connectivity for long-term persistence of low vagility native species. Journal compilation ?? 2006 Blackwell Publishing Ltd.

Molecular Ecology↗
USGS1986

Changing landscapes and the cosmopolitism of the eastern Colorado avifauna

The avifauna of continental North America has changed dramatically since colonial times. Excessive hunting contributed, at least in part, to the extinction of birds such as the great auk ( Pinguinus impennis ) and passenger pigeon ( Ectopistes migratorius ), while more recently organochlorine insecticide residues have resulted in drastic reductions in numbers of brown pelicans ( Pelecanus occidentalis ) (Anderson et al. 1975) and other species. Generally, however, vertebrate populations change in direct response to changes in their habitats. For example, herring gulls ( Larus argentatus ) have increased in numners (Kadlec and Drury 1968) with urbanization of the New England coastline, in the same locations formerly occupied by the extinct heath hen ( Tympanuchus cupido cupido ). Also, passerine birds of forest interiors have declined in numbers with fragmentation of the eastern deciduous forest into small stands; this fragmentation has led to increases in numbers of edge species (Robbins 1979, Ambuel and Temple 1983). Even subtle community shifts can introduce new competitive processes that can augment population changes among species (Brittingham and Temple 1983). Such studies of broad-scale changes in vegetative communities and their influence on native wildlife species have fostered the recent topical emphasis on "conservation biology" (Soule and Wilcox 1980, Soule 1985) and "landscape ecology" (Burgess and Sharpe 1981, Harris 1984:25-43). As changes in landscapes are causing subtle (but potentially dramatic) changes in the distribution of native species, conservation biologists are finding that mere presence-absence data on populations, or even accurate information on reproductive success, is inadequate to evaluate management activities or environmental perturbations. The principles of "conservation genetics" are attracting interest in the management of natural preserves especially (Schonewald-Cox et al. 1983). Changing patterns in landscape complexion or genetic makeup of a population are difficult to detect locally. Contemporary issues in the conservation of native species demand regional and continental perspectives (Samson and Knopf 1982). Thus, management activities at specific sites are often viewed as short-sighted by planners and conservation critics. This paper illustrates how these contemporary theories can influence a local conservation perspective. That perspective is developed around historical processes that have led to cosmopolitism of the local avifauna on the Colorado Division of Wildlife's South Platte Wildlife Management Area (SPWMA) near Crook, Colorado.

Colorado↗
USGS2023

Genetic structure across isolated Virginia populations of the endangered candy darter (Etheostoma osburni)

Candy darter Etheostoma osburni , a federally endangered non-game fish, has been extirpated from most of its historic range in Virginia and now occurs in four isolated populations in the New River drainage. Understanding of population genetic structure will provide insights into the recent natural history of the species and can inform conservation management. Our objectives were to: characterize population genetic structure, estimate and compare effective population sizes ( N e ), and use this information to infer recent population history. Variation at mitochondrial cytochrome b sequences among 150 individuals showed 10 haplotypes separated by 1–14 mutational steps, some shared and some unique to particular populations. Variation at 12 microsatellite loci among 171 individuals showed lower variation in Dismal Creek than in other populations. All populations showed evidence of having experienced a genetic bottleneck and were highly differentiated from one another based on both types of DNA markers. Population genetic structure was related to stream position in regard to the New River, suggesting that populations were once connected. N e estimates for all populations were less than the 500 recommended to maintain evolutionary potential, but most estimates were greater than the 100 needed for use as source populations. Our findings indicate that habitat management to allow expansion of populations, and translocations to exchange genetic material among populations, may be effective tactics to promote conservation of candy darter in Virginia.

North Carolina, Virginia, West Virginia↗
USGS2024

A metapopulation strategy to support long term conservation of genetic diversity in Department of the Interior bison

Once numbering in the tens of millions, plains bison ( Bison bison bison ) were nearly driven to extinction with only a few hundred individuals remaining by the late 19th century. Plains bison have since recovered to approximately 20,000 animals managed in conservation herds throughout North America, yet substantial challenges to their recovery remain. The Department of the Interior (DOI) is working with diverse partners to steward approximately 11,000 bison in 18 conservation herds across 12 states. Most herds exist in areas without native predators, and removals are required to keep herd sizes at or below carrying capacity. The loss of genetic diversity within bison, and the fact that most DOI herds are relatively small and isolated from each other with no opportunity for natural gene flow, raises concerns about maintaining genetic diversity over the long term. Connecting populations through gene flow (i.e., creating a metapopulation) can minimize loss of genetic diversity, both within and across populations. Management of DOI bison conservation herds has historically varied across bureaus and conservation units. Adopting a national perspective on bison conservation was identified as a priority in the 2008 Department of the Interior Bison Conservation Initiative (BCI). The concept of metapopulation management as a potential tool to maximize the conservation of genetic diversity among DOI herds was first described in this 2008 Initiative and was specifically encouraged in the 2010 DOI Bison Conservation Genetics Workshop report (Dratch and Gogan 2010). In the 2020 BCI, the DOI re-affirmed its commitment to conserving bison as native, North American wildlife. This document establishes a framework for a nationally coordinated strategy for bison managed by the DOI to support the genetic conservation goals outlined in the 2020 BCI. This is a decisionmaking framework that guides managers through the process of determining when and how to consider translocations. Decisions and actions within the framework are informed by analysis and interpretation of data housed in an integrated, relational database that will be initially populated with the most current data and updated annually thereafter. It provides science-based guidance on how to conserve DOI bison genetic diversity through strategic translocations, while also considering cattle introgression and bison health. We illustrate how this Strategy can be used to guide the establishment of new conservation herds and discuss what it means to be a DOI partner. Finally, this is intended to be used as a living document that will evolve as needs and technologies change.

Science Report↗
USGS1998

How organisms do the right thing: The attractor hypothesis

Neo-Darwinian theory is highly successful at explaining the emergence of adaptive traits over successive generations. However, there are reasons to doubt its efficacy in explaining the observed, impressively detailed adaptive responses of organisms to day-to-day changes in their surroundings. Also, the theory lacks a clear mechanism to account for both plasticity and canalization. In effect, there is a growing sentiment that the neo-Darwinian paradigm is incomplete, that something more than genetic structure, mutation, genetic drift, and the action of natural selection is required to explain organismal behavior. In this paper we extend the view of organisms as complex self-organizing entities by arguing that basic physical laws, coupled with the acquisitive nature of organisms, makes adaptation all but tautological. That is, much adaptation is an unavoidable emergent property of organisms' complexity and, to some a significant degree, occurs quite independently of genomic changes wrought by natural selection. For reasons that will become obvious, we refer to this assertion as the attractor hypothesis. The arguments also clarify the concept of "adaptation." Adaptation across generations, by natural selection, equates to the (game theoretic) maximization of fitness (the success with which one individual produces more individuals), while self-organizing based adaptation, within generations, equates to energetic efficiency and the matching of intake and biosynthesis to need. Finally, we discuss implications of the attractor hypothesis for a wide variety of genetical and physiological phenomena, including genetic architecture, directed mutation, genetic imprinting, paramutation, hormesis, plasticity, optimality theory, genotype-phenotype linkage and puncuated equilibrium, and present suggestions for tests of the hypothesis. ?? 1998 American Institute of Physics.

Chaos↗
USGS2011

Population status and population genetics of northern leopard frogs in Arizona

Increasing isolation of populations by habitat fragmentation threatens the persistence of many species, both from stochastic loss of small isolated populations, and from inbreeding effects in populations that have become genetically isolated. In the southwestern United States, amphibian habitat is naturally patchy in occurrence because of the prevailing aridity of the region. Streams, rivers, and other wetlands are important both as habitat and as corridors that connect populations. However, populations of some species have become more fragmented and isolated by habitat degradation and loss. Northern leopard frogs (Rana pipiens) have experienced serious declines in the Southwest. We conducted an extensive survey across the known range of northern leopard frogs in Arizona to determine the current distribution and abundance of the species. From a range that once spanned much of the northern and central part of the State, northern leopard frogs have been reduced to three or four widely separated populations, near Lyman Lake in east-central Arizona, in the Stoneman Lake area south of Flagstaff, along Truxton Wash near Peach Springs, and a population of uncertain extent on Navajo Nation lands. The Lyman Lake and Truxton Wash populations are small and extremely isolated. The Stoneman Lake population, however, is an extensive metapopulation spread across several stream drainages, including numerous ponds, wetlands, and artificial tanks. This is the only population in Arizona that is increasing in extent and numbers, but there is concern about the apparent introduction of nonnative genetic stock from eastern North America into this area. We analyzed genetic diversity within and genetic divergence among populations of northern leopard frogs, across both extant and recently extirpated populations in Arizona. We also analyzed mitochondrial DNA to place these populations into a larger phylogenetic framework and to determine whether any populations contained genetic material not native to the region. We found a high level of genetic divergence among the population centers (Lyman Lake, Stoneman Lake, Truxton Wash), and low genetic diversity in the small populations at Lyman Lake and Truxton. The extensive population in the Stoneman Lake area had high genetic diversity and relatively high gene flow among ponds and tanks across the entire extent of the area. However, this population also contained a mitochondrial haplotype from northern leopard frogs from the northeastern United States or southeastern Canada, probably representing the introduction of released pets or laboratory animals. These eastern frogs were extensively distributed through this population, and probably contributed to its high genetic diversity. Genetic diversity in the outlying populations such as Truxton Wash, East Buckskin Tank, and Hess Tank was low and showed signs of recent bottlenecks. However, supplementing genetic diversity in these native populations with artificial gene flow from the Stoneman Lake area may only be advisable in extreme situations for which there are no other alternatives. Until the nature and effects of genetic mixing of eastern and western genetic stocks of northern leopard frogs are better understood, the long-term persistence of the species in the Southwest may be best served by retaining as much genetic integrity of remaining native populations as possible.

Arizona↗