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At least 73 records · Page 4Linked to original sources
USGS2018

Modeling habitat for Marbled Murrelets on the Siuslaw National Forest, Oregon, using lidar data

Habitat models using lidar-derived variables that quantify fine-scale variation in vegetation structure can improve the accuracy of occupancy estimates for canopy-dwelling species over models that use variables derived from other remote sensing techniques. However, the ability of models developed at such a fine spatial scale to maintain accuracy at regional or larger spatial scales has not been tested. We tested the transferability of a lidar-based habitat model for the threatened Marbled Murrelet ( Brachyramphus marmoratus ) between two management districts within a larger regional conservation zone in coastal western Oregon. We compared the performance of the transferred model against models developed with data from the application location. The transferred model had good discrimination (AUC = 0.73) at the application location, and model performance was further improved by fitting the original model with coefficients from the application location dataset (AUC = 0.79). However, the model selection procedure indicated that neither of these transferred models were considered competitive with a model trained on local data. The new model trained on data from the application location resulted in the selection of a slightly different set of lidar metrics from the original model, but both transferred and locally trained models consistently indicated positive relationships between the probability of occupancy and lidar measures of canopy structural complexity. We conclude that while the locally trained model had superior performance for local application, the transferred model could reasonably be applied to the entire conservation zone.

Oregon↗
USGS2025

Laying sequence and oceanographic factors affect egg size in Scripps's Murrelets Synthliboramphus scrippsi at Santa Barbara Island

Egg size is an important avian life history parameter, with larger eggs indicating greater investment of resources in the chick. Prey availability can affect such investment. We investigated the effects of oceanographic conditions and laying sequence on Scripps's Murrelet Synthliboramphus scrippsi egg size at Santa Barbara Island, California during 2009-2017. We evaluated oceanographic covariates characterizing marine productivity for their effect on egg size, including large-scale oceanographic indices such as the Pacific Decadal Oscillation (PDO) index, Oceanic Niño Index (ONI), and North Pacific Gyre Oscillation (NPGO) index. We also evaluated a larval anchovy catch-per-unit-effort (ANCHL) index and the Biologically Effective Upwelling Transport Index (BEUTI) as region-wide indices, and sea surface temperature (SST) as a local index. We evaluated oceanographic conditions over the entire year and during the breeding season only. We also considered the contribution of lagged effects to oceanographic conditions. Our results generally ran counter to our hypothesis that increased ocean productivity should increase egg size. Based on Akaike's Information Criterion, the four top-ranked models provided support for an association between larger eggs and conditions indicative of lower oceanographic productivity, including lower values of BEUTI and NPGO, and higher values of ONI, PDO, and SST. The only result that supported our hypothesis was a positive relationship between ANCHL and egg size, although the 95% confidence interval for the effect included 0. The strongest relationship detected was between laying sequence and egg size, as second eggs were considerably larger than first eggs. Our results indicate substantial complexity in the relationship between ocean productivity and seabird demography. A better understanding of how ocean productivity affects seabird breeding outcomes through multiple mechanisms will help improve predictions of how seabirds will respond to changing ocean conditions.

California↗
USGS2013

Energy cost of vessel disturbance to Kittlitz's Murrelets Brachyramphus brevirostris

We evaluated the energy cost of vessel disturbance for individual Kittlitz’s Murrelets Brachyramphus brevirostris in Glacier Bay National Park and Preserve in Alaska, USA. We used Monte Carlo simulations to model the daily energy expense associated with flight from vessels by both breeding and non-breeding birds and evaluated risk based on both the magnitude of costs incurred and the degree to which the costs may be chronic. We used two scenarios of vessel disturbance for average- and peak-vessel traffic. Because they are more likely to fly away from vessels, non-breeding birds had a greater increase in energy expenditure when disturbed (up to 30% increase under the average scenario and >50% increase under the peak scenario) than breeders (up to 10% and 30% increases under the average and peak scenarios, respectively). Likewise, non-breeding birds were more likely to experience chronic increases in energy expense (i.e. a greater percentage of days with an increase in energy expenditure) than breeding birds. Our modeling results indicated that breeding and non-breeding birds were both susceptible to fitness consequences (e.g. reduced reproductive success and survival) resulting from the energy cost.

Alaska↗
USGS2004

Small boats disturb fish-holding marbled murrelets

Disturbance of seabirds by people at nesting colonies can reduce reproductive success and alter population demographics (Vermeer and Rankin 1984). In response to disturbance, adult seabirds may increase the incidence of alarm postures and alarm calling (Burger and Gochfeld 1993), increase heart and breathing rates (Culik and others 1990; Wilson and others 1991), reduce attendance of nest sites (Olsson and Gabrielsen 1990; Wilson and others 1991), and completely abandon nests and chicks (Boellstorff and others 1988; Evans and Kampp 1991). Daily or frequent handling of chicks can reduce their growth rates and survival (Harris and Wanless 1984; Pierce and Simons 1986; Piatt and others 1990).

Northwestern Naturalist↗
USGS1994

[Book review] The Ancient Murrelet. A natural history in the Queen Charlotte Islands

Leadership in ecological research on north-temperate-zone seabirds has long been associated with the region of the northeastern Atlantic, which enjoys a tradition of detailed, innovative work spanning several decades. Although the temperate North Pacific is home to several of the same species that figure prominently in the Atlantic and also has a host of interesting species found nowhere else, Pacific birds had until recently received comparatively little attention. Few important advances in seabird biology had come from the northern North Pacific, which tended to leave those of us who work in the region harboring a slight inferiority complex. Happily, this situation is beginning to change. First, we are learning that in some instances the population dynamics of shared species differ greatly between the North Pacific and North Atlantic. The Pacific work, therefore, is more than just a rehash of that which was already known. It takes an important step toward understanding geographic variation in demography – variation that would not have been anticipated from any casual comparison of the environments, which appear superficially similar. Second, we are starting to see the results of in-depth work on species unique to the region. Tony Gaston’s book, the first monographic treatment of any North Pacific alcid, is one encouraging sign that seabird research in the temperate North Pacific is coming of age.

The Auk↗
USGS2017

Disturbance of a rare seabird by ship-based tourism in a marine protected area

Managers of marine protected areas (MPAs) must often seek ways to allow for visitation while minimizing impacts to the resources they are intended to protect. Using shipboard observers, we quantified the “zone of disturbance” for Kittlitz’s and marbled murrelets ( Brachyramphus brevirostris and B . marmoratus ) exposed to large cruise ships traveling through Glacier Bay National Park, one of the largest MPAs in North America. In the upper reaches of Glacier Bay, where Kittlitz’s murrelets predominated, binary logistic regression models predicted that 61% of all murrelets within 850 m perpendicular distance of a cruise ship were disturbed (defined as flushing or diving), whereas in the lower reaches, where marbled murrelets predominated, this percentage increased to 72%. Using survival analysis, murrelets in both reaches were found to react at greater distances when ships approached indirectly, presumably because of the ship’s larger profile, suggesting murrelets responded to visual rather than audio cues. No management-relevant covariates (e.g., ship velocity, route distance from shore) were found to be important predictors of disturbance, as distance from ship to murrelet accounted for > 90% of the explained variation in murrelet response. Utilizing previously published murrelet density estimates from Glacier Bay, and applying an average empirical disturbance probability (68%) out to 850 m from a cruise ship’s typical route, we estimated that a minimum of 9.8–19.6% of all murrelets in Glacier Bay are disturbed per ship entry. Whether these disturbance levels are inconsistent with Park management objectives, which include conserving wildlife as well as providing opportunities for visitation, depends in large part on whether disturbance events caused by cruise ships have impacts on murrelet fitness, which remains uncertain.

Alaska↗
USGS2024

Presence-absence surveys yield spatially imprecise information about nesting sites of an endangered, forest-nesting seabird

Presence-absence surveys are frequently used to monitor populations of rare and elusive species. Such data may also be used as a proxy for breeding activity, but links between presence-absence data and higher-order processes must be validated to determine their reliability. The Marbled Murrelet ( Brachyramphus marmoratus ) is a threatened seabird that nests in older-aged forests along the Pacific Coast. Its nests are exceptionally difficult to find, so we tested whether presence-absence surveys can help identify nesting sites. Between 2018 and 2022 we located 17 trees containing active murrelet nests in the Oregon Coast Range (USA) and 38 trees that purportedly contained no active nests (26 in occupied murrelet stands and 12 in unoccupied stands). Observers surveyed within 200 m of focal trees using standard presence-absence surveys, and we modeled the effects of site status (active nest or control) and distance from the focal tree on probability of recording murrelets. We never detected murrelets in unoccupied control sites. We found some evidence that the probability of recording presence was higher at active nesting sites (0.81, 95% CI: 0.71, 0.88) than at occupied control sites (0.71, 95% CI: 0.64, 0.78) although a null model had similar support. The probability of recording murrelet breeding behaviors in nesting and occupied control sites was 0.20 (95% CI: 0.14, 0.27) regardless of distance to a known active nest. These results suggest that presence-absence surveys may be useful for identifying plausible murrelet nesting habitat, but they are ineffective for identifying active nesting sites. Moreover, we estimated that 20 repeated surveys at a point in space are required to reasonably conclude there are no active nesting sites within 200 m. These findings serve as an important reminder of the limitations that can come with relying on presence-absence data alone to identify breeding sites.

Oregon↗
USGS1996

Phylogenetic relationships within the Alcidae (Charadriiformes: Aves) inferred from total molecular evidence

The Alcidae is a unique assemblage of Northern Hemisphere seabirds that forage by "flying" underwater. Despite obvious affinities among the species, their evolutionary relationships are unclear. We analyzed nucleotide sequences of 1,045 base pairs of the mitochondrial cytochrome b gene and allelic profiles for 37 allozyme loci in all 22 extant species. Trees were constructed on independent and combined data sets using maximum parsimony and distance methods that correct for superimposed changes. Alternative methods of analysis produced only minor differences in relationships that were supported strongly by bootstrapping or standard error tests. Combining sequence and allozyme data into a single analysis provided the greatest number of relationships receiving strong support. Addition of published morphological and ecological data did not improve support for any additional relationship. All analyses grouped species into six distinct lineages: (1) the dovekie ( Alle alle ) and auks, (2) guillemots, (3) brachyramphine murrelets, (4) synthliboramphine murrelets, (5) true auklets, and (6) the rhinoceros auklet ( Cerorhinca monocerata ) and puffins. The two murres (genus Uria ) were sister taxa, and the black guillemot ( Cepphus grylle ) was basal to the other guillemots. The Asian subspecies of the marbled murrelet ( Brachyramphus marmoratus perdix ) was the most divergent brachyramphine murrelet, and two distinct lineages occurred within the synthliboramphine murrelets. Cassin's auklet ( Ptychoramphus aleuticus ) and the rhinoceros auklet were basal to the other auklets and puffins, respectively, and the Atlantic ( Fratercula arctica ) and horned ( Fratercula corniculata ) puffins were sister taxa. Several relationships among tribes, among the dovekie and auks, and among the auklets could not be resolved but resembled "star" phylogenies indicative of adaptive radiations at different depths within the trees.

Molecular Biology and Evolution↗
USGS2026

Spatially concentrating logging could mitigate climate-magnified fragmentation risks to a globally endangered bird

1. Rising timber demand is transforming forest structure globally, profoundly affecting biodiversity and climate resilience. Logging-driven fragmentation is potentially a major driver of biodiversity loss in production landscapes, yet its interactions with escalating climate stressors remain poorly understood. 2. We combine two decades of Landsat-derived habitat metrics with 29,000 surveys of the marbled murrelet ( Brachyramphus marmoratus )—an iconic Pacific Northwest old-forest specialist seabird affecting management of >10 million hectares. Controlling for habitat amount and detection probability, increasing landscape-scale forest edge amount sharply reduces murrelet occupancy, with impacts worsening under unfavourable climate-driven ocean conditions. 3. Comparing alternative landscape-scale timber harvest strategies, spatially concentrated logging consistently supports higher murrelet populations than fragmented approaches producing equivalent wood volumes, with benefits amplified under adverse ocean conditions. However, historical harvesting policies in the Pacific Northwest have instead driven severe habitat fragmentation, which we show is eroding the value of core set-aside forests on federal and conservation lands and ultimately rendering murrelets more vulnerable to climate change. 4. Synthesis and applications : We map key opportunities to boost populations by reducing edginess around remaining nesting habitat and investigate these opportunities' spatial distribution across land ownership and timber productivity gradients. Concentrating logging could be critical for mitigating fragmentation and climate threats for murrelets and potentially other forest-dependent species amid rising timber demand.

California, Oregon, Washington↗
USGS2024

Invisible hand of sampling for management: Underlying needs to survey a threatened seabird can bias aggregated data

Aim Surveying for a species of concern ahead of proposed activities that alter its habitat is routine practice in conservation and management. Such surveys may accumulate large datasets that could further elucidate trends in abundance and distribution. However, the as-needed surveying of proposed activities may impart a sample site selection bias on the data if used for another purpose. Management of a threatened, forest-nesting seabird offered an example of this. Here we assessed how resource management planning and survey requirements can bias clearance monitoring survey data collected prior to proposed timber harvests, if those data are used for other purposes. Location Oregon and Washington, USA. Taxon Marbled Murrelet ( Brachyramphus marmoratus ). Methods To assess how timber planning and other factors influenced marbled murrelet survey location selection, we used logistic regression models to examine habitat associations of marbled murrelet survey sites ( n = 9178) encompassing proposed timber harvests, and the survey stations ( n = 38,923) therein, across the murrelet's inland range in Washington and Oregon, USA between 1989 and 2021. We then simulated the effect this selective sampling might have on assessments of occupancy trends. Results Most habitat characteristics considered did influence where surveys were located, with distance to roads often being the strongest predictor of survey location. The strength of selection for each covariate changed over time, such that a habitat characteristic strongly influenced location selection in a year but was less influential in another year. The simulation analysis suggested that the non-random selection of survey sites could profoundly bias assessments of occupancy trends. Conclusions When using these clearance monitoring survey data– or any data–beyond their original purpose, careful consideration should be given to the scope of inference provided and analytical methods used, to ensure that observed trends are the product of biological processes and not biased by sampling artefacts.

Oregon, Washington↗
USGS2024

Passive acoustic monitoring and convolutional neural networks facilitate high-resolution and broadscale monitoring of a threatened species

Population monitoring is an essential component of biodiversity conservation and management, but low detection probabilities for rare and/or cryptic species makes estimating abundance and occupancy challenging. Passive acoustic monitoring combined with machine learning algorithms represents a potential path forward to effectively and efficiently monitor the occurrence of rare vocalizing species across entire forest landscapes. Our objectives were to develop and implement a convolutional neural network (PNW-Cnet) to identify vocalizations of a rare and threatened forest nesting bird species – the marbled murrelet ( Brachyramphus marmoratus ) – in the Pacific Northwest, U.S.A., 2018–2021. We used PNW-Cnet predictions from broadscale passive acoustic monitoring data to examine spatiotemporal patterns in the distribution of murrelets. PNW-Cnet showed sufficiently high prediction accuracy (overall precision > 0.9) to enable broadscale population monitoring. Spatiotemporal analysis showed that annual peak murrelet call abundance occurs in ordinal weeks 28–32 (late July–Mid August) but this varied by study area. The greatest number of detections typically occurred in the Olympic Peninsula and Oregon Coast Range where late-successional forest dominates and nearer to ocean habitats. We demonstrate that passive acoustic monitoring can be used to understand intensity of use across broad scales for a rare and cryptic species in addition to the typical detection/non-detection data that are often collected. Passive acoustic monitoring combined with PNW-Cnet offers considerable promise for species distribution modeling and long-term population monitoring for rare species.

Oregon, Washington↗
USGS1994

Phylogeny and evolution of the auks (subfamily Alcinae) based on mitochondrial DNA sequences

The genetic divergence and phylogeny of the auks was assessed by mitochondrial DNA sequence comparisons in a study using 19 of the 22 auk species and two outgroup representatives. We compared more than 500 nucleotides from each of two mitochondrial genes encoding 12S rRNA and the NADH dehydrogenase subunit 6. Divergence times were estimated from transversional substitutions. The dovekie ( Alle alle ) is related to the razorbill ( Alca torda ) and the murres ( Uria spp). Furthermore, the Xantus's murrelet ( Synthliboramphus hypoleucus ) and the ancient ( Synthliboramphus antiquus ) and Japanese murrelets ( Synthliboramphus wumizusume ) are genetically distinct members of the same main lineage, whereas brachyramphine and synthliboramphine murrelets are not closely related. An early adaptive radiation of six main species groups of auks seems to trace back to Middle Miocene. Later speciation probably involved ecological differentiations and geographical isolations.

PNAS↗
USGS2012

Oceanographic gradients and seabird prey community dynamics in glacial fjords

Glacial fjord habitats are undergoing rapid change as a result of contemporary global warming, yet little is known about how glaciers influence marine ecosystems. These ecosystems provide important feeding, breeding and rearing grounds for a wide variety of marine organisms, including seabirds of management concern. To characterize ocean conditions and marine food webs near tidewater glaciers, we conducted monthly surveys of oceanographic variables, plankton, fish and seabirds in Kenai Fjords, Alaska, from June to August of 2007 and 2008. We also measured tidal current velocities near glacial features. We found high sediment load from glacial river runoff played a major role in structuring the fjord marine ecosystem. Submerged moraines (sills) isolated cool, fresh, stratified and silt-laden inner fjord habitats from oceanic influence. Near tidewater glaciers, surface layers of turbid glacial runoff limited availability of light to phytoplankton, but macrozooplankton were abundant in surface waters, perhaps due to the absence of a photic cue for diel migration. Fish and zooplankton community structure varied along an increasing temperature gradient throughout the summer. Acoustic measurements indicated that low density patches of fish and zooplankton were available in the surface waters near glacial river outflows. This is the foraging habitat occupied most by Kittlitz's murrelet (Brachyramphus brevirostris), a rare seabird that appears to be specialized for life in glacially influenced environments. Kittlitz's murrelets were associated with floating glacial ice, and they were more likely to occur near glaciers, in deeper water, and in areas with high acoustic backscatter. Kittlitz's murrelet at-sea distribution was limited to areas influenced by turbid glacial outflows, and where prey was concentrated near the surface in waters with low light penetration. Tidewater glaciers impart unique hydrographic characteristics that influence marine plankton and fish communities, and this has cascading effects on marine food webs in these ecosystems.

Fisheries Oceanography↗