SEARCH · Search USGS

Results for “Marine and Freshwater Research”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 73 records · Page 4Linked to original sources

USGS2003

Ecosystem history of southern and central Biscayne Bay: Summary report on sediment core analyses

During the last century, the environs of Biscayne Bay have been greatly affected by anthropogenic alteration through urbanization of the Miami/Dade County area. The sources, timing, delivery, and quality of freshwater flow into the Bay have been changed by construction of a complex canal system that controls movement of water throughout south Florida. Changes in shoreline and sub-aquatic vegetation and marine organisms have been observed and changes in water delivery are believed to be the cause. Current restoration goals are attempting to restore natural flow of fresh water into Biscayne and Florida Bays and to restore the natural fauna and flora, but first we need to determine pre-alteration baseline conditions in order to establish targets and performance measures for restoration. This research is part of an ongoing study designed to address the needs of the Biscayne Bay Coastal Wetlands Project (BBCW) of the Comprehensive Everglades Restoration Plan (CERP). By establishing the natural patterns of temporal change in salinity, water quality, vegetation, and benthic fauna in Biscayne Bay and the nearby wetlands over the last 100- 500 years the USGS, in collaboration with our partners, will provide the data necessary to set realistic targets to achieve the BBCW Project goals. Six cores from three sites in Biscayne Bay were collected in April 2002 for multidisciplinary multi-proxy analyses. This report details the results of these analyses and compares the 2002 cores to cores collected in 1997. The following are our significant findings to date: The salinity of central Biscayne Bay has become increasingly marine and increasingly stable over the last 100 years. At No Name Bank, prior to approximately 1915, the inter-decadal and decadal salinity fluctuations appear to have been greater than after 1915 when salinities stabilized at that site. Continental shelf/open marine influence on the sites has increased during the 20th century. There is no indication of inter-decadal salinity extremes or periods of hypersalinity. Freshwater and mesohaline salinities have had a minor influence on No Name bank throughout the time of deposition. At Featherbed Bank, the influence is reduced to mesohaline salinities. Card Bank has experienced relatively large swings in salinity over multi-decadal and centennial timescales, compared to central Biscayne Bay, but marine influence at the site has increased over the last century. Indications of regional scale patterns have been found, especially in the shell chemistry data and the pollen assemblages. These regional patterns indicate that the changes are not site specific and may not be limited to Biscayne Bay. Sub-aquatic vegetation has undergone bay-wide patterns of change over the last 200-500 years, which includes expansion prior to 1900 and declines during the last century in central Biscayne Bay. Thalassia appears to have increased at all three core sites sometime between 1550 and 1750 AD. A decline in Thalassia appears to have occurred after 1950 at No Name Bank and slightly earlier in the 20th century at Featherbed Bank. Card Bank does not appear to have experienced any declines in vegetation on an inter-decadal scale during the 20th century. Molluscan faunal abundance and diversity have undergone significant changes in central Biscayne Bay. Indicators of increased organic-rich sediments at No Name occur between 1869 to 1888 and between the 1930’s to 1975. These changes may correlate to human activities (settlement, population growth). These findings represent a first step towards the project’s goal to reconstruct the history of Biscayne Bay and they provide us with a working model to be tested at other sites. It is clear from our findings that Biscayne Bay has been a dynamic environment over the last 500 years, with natural changes occurring in salinity and benthic habitats. However, several significant changes have occurred in the 20th century: 1) increased stabilization of marine salinities; 2) declines in seagrass in central Biscayne Bay; 3) dramatic changes in molluscan abundance and diversity in central Biscayne Bay. The question remains - how do we better differentiate natural cycles of change from anthropogenic change within these observed trends? The preliminary implications from our research are that changes in salinity and benthic habitats have occurred naturally in Biscayne Bay on inter-decadal to centennial scales, perhaps due to climatic changes, changes in sea level, bank migrations, or a combination of factors. However, further work needs to be done to determine which components of change in the 20th century are human-induced and which are natural. By examining the historical records preserved in the sediments of Biscayne Bay, we can provide restoration trust agencies with the information necessary to set realistic targets and performance measures for Biscayne Bay.

Florida↗

USGS2005

Introduction [to Issue 3]

Artificial propagation of aquatic organisms is increasing globally and currently accounts for approximately 32% of total world fishery production (Vannuccini, 2004). Between 1970 and 2000, aquaculture production of salmonids has grown from less than 200,000 metric tons per year to over 1.5 million metric tons (Tacon, 2003). In 1995, the number of Atlantic salmon (Salmo salar) far exceeded the carrying capacity of salmon in the wild but over 94% of all adult Atlantic salmon were in aquaculture environments (Gross, 1998). Since the 1970’s, concerns have arisen about interactions of hatchery and wild produced salmonids in native habitats. In response, research has addressed concerns about domestication and genetic impacts (Reisenbichler and McIntyre, 1977; Hindar et al., 1991; Waples, 1991; Clifford et al., 1998a; Fleming et al., 2000, 2002; Hard et al., 2000), transfer of disease and parasites (Johnsen and Jensen, 1994; Bakke and Harris, 1998), behavior of spawning adults (Fleming and Gross, 1992; Fleming et al., 1994; Økland et al., 1995; Youngston et al., 1998), differences in fitness traits and life history (Jonsson et al., 1991; Thodesen et al., 1999; McGinnity et al., 2003), and behavioral interactions between hatchery and wild juvenile salmon (Swain and Riddell, 1990; Johnsson et al., 1996; Clifford et al., 1998b). Much of this research has been driven by concerns about the impacts of escaped farmed Atlantic salmon in the North Atlantic Ocean (Hansen et al., 1991). Studies of the interactions between hatchery and wild salmonids, with few exceptions (see Myers et al., 2000), have primarily focused on interactions in freshwater environments. Interactions between hatchery and wild fishes in estuarine and marine environments have not received the same attention, but may have signifi- cant impacts on wild populations. To address this issue, we organized a symposium held at the 2003 annual meeting of the Western Division of the American Fisheries Society in San Diego, California. The session was titled Interactions of Hatchery and Wild Fishes in Marine and Estuarine Environments and included nine presentations. All but one presentation focused on salmonids. This Special Issue of Reviews in Fish Biology and Fisheries includes five papers that were submitted to the symposium.

Reviews in Fish Biology and Fisheries↗

USGS2026

Evaluating the use of uncrewed surface vessels to enhance Lake Erie acoustic prey-fish surveys

Incorporation of autonomous uncrewed surface vessels (USVs) into large-scale acoustic surveys may enhance spatiotemporal extent and quality of fish density estimates. Lake Erie is currently surveyed by three motorized research vessels (RVs), which annually collect acoustic data and estimate prey-fish abundances. To evaluate the feasibility of incorporating a USV into the existing survey to increase spatial coverage, we compared paired acoustic measurements of target strength (TS), area backscattering coefficient (ABC), and areal fish density from four motorized RVs (three currently and one historically used) and one USV (Saildrone Explorer). Acoustic data were collected along 2-km transects during five sampling events distributed throughout Lake Erie. Despite observing event-specific differences that were likely impacted by sampling conditions, survey-level estimates of areal density between RVs and the USV were comparable (i.e., RV 6% lower than USV). RVs and the USV appear to react differently (speed and stability) to variable environmental conditions (wind and waves), which impacted data quality and must be mitigated in future applications. However, similar to previous comparisons in marine and freshwater environments, incorporating a USV into an acoustic survey could enhance annual fish density estimates by increasing effort, spatial coverage, logistical flexibility, and biological data collection opportunities from RVs.

Michigan, New York, Ohio, Pennsylvania↗

USGS2026

PFAS contamination in Florida estuarine fishes: Levels, patterns, and estimated human and ecological health risks

Per- and polyfluoroalkyl substances (PFAS) pose a significant health threat due to their environmental persistence and toxicity. While PFAS contamination is widespread in Florida, the state currently lacks fish consumption advisories (FCAs) for these compounds, despite existing FCAs for legacy pollutants. This study quantified 40 PFAS in edible muscle tissue from 264 fish (16 species) across four estuaries along Florida's Atlantic coast to assess ecological and human health risks. The highest concentrations of total PFAS were found in Red Drum ( Sciaenops ocellatus ; 0.209 – 51.6 ng/g wet weight) and Spotted Seatrout ( Cynoscion nebulosus; 2.01 – 24.3 ng/g ww) in the Indian River Lagoon, where up to 68% of Red Drum and 75% of Spotted Seatrout exceeded ecological quality standards, indicating potential impacts on predators. PFOS was the predominant PFAS, driving ecological and human health risks. Estimated daily intakes (EDIs) of PFOS exceeded the EPA reference dose (RfD) by up to 3 orders of magnitude, with the highest exposures concentrated in Red Drum and Spotted Seatrout from the Indian River Lagoon. These findings highlight that PFAS monitoring of tissue concentrations in fish across Florida's freshwater and marine systems would be needed for accurately quantifying exposure risks. Such efforts are fundamental to informing regulatory frameworks regarding FCAs and ensuring the long-term protection of aquatic ecosystems and human health.

Florida↗

USGS2014

Land-margin ecosystem hydrologic data for the coastal Everglades, Florida, water years 1996-2012

Mangrove forests and salt marshes dominate the landscape of the coastal Everglades (Odum and McIvor, 1990). However, the ecological effects from potential sea-level rise and increased water flows from planned freshwater Everglades restoration on these coastal systems are poorly understood. The National Park Service (NPS) proposed the South Florida Global Climate Change Project (SOFL-GCC) in 1990 to evaluate climate change and the effect from rising sea levels on the coastal Everglades, particularly at the marsh/mangrove interface or ecotone (Soukup and others, 1990). A primary objective of SOFL-GCC project was to monitor and synthesize the hydrodynamics of the coastal Everglades from the upstream freshwater marsh to the downstream estuary mangrove. Two related hypotheses were set forward (Nuttle and Cosby, 1993): 1. There exists hydrologic conditions (tide, local rainfall, and upstream water deliveries), which characterize the location of the marsh/mangrove ecotone along the marine and terrestrial hydrologic gradient; and 2. The marsh/mangrove ecotone is sensitive to fluctuations in sea level and freshwater inflow from inland areas. Hydrologic monitoring of the SOFL-GCC network began in 1995 after startup delays from Hurricane Andrew (August 1992) and organizational transfers from the NPS to the National Biological Survey (October 1993) and the merger with the U.S. Geological Survey (USGS) Biological Research Division in 1996 (Smith, 2004). As the SOFL-GCC project progressed, concern by environmental scientists and land managers over how the diversion of water from Everglades National Park would affect the restoration of the greater Everglades ecosystem. Everglades restoration scenarios were based on hydrodynamic models, none of which included the coastal zone (Fennema and others, 1994). Modeling efforts were expanded to include the Everglades coastal zone (Schaffranek and others, 2001) with SOFL-GCC hydrologic data assisting the ecological modeling needs. In 2002, as a response for a more interdisciplinary science approach to understanding the coastal Everglades ecological system, the SOFL-GCC hydrology project was integrated into the “Dynamics of Land-Margin Ecosystems: Historical Change, Hydrology, Vegetation, Sediment, and Climate” study (Smith and others, 2002). Data from the ongoing study has been useful in providing an empirical hydrologic baseline for the greater Everglades ecosystem restoration science and management needs. The hydrology network consisted of 13 hydrologic gaging stations installed in the southwestern coastal region of Everglades National Park along three transects: Shark River (Shark or SH) transect, Lostmans River (Lostmans or LO) transect, and Chatham River (Chatham or CH) transect (fig. 1). There were five paired surface-water/groundwater gaging stations on the Shark transect (SH1, SH2, SH3, SH4, and SH5) and one stage gaging station (BSC) in the Big Sable Creek; four paired surface-water/groundwater gaging stations on the Lostmans transect (LO1, LO2, LO3, and LO4); and three paired surface-water/groundwater gaging stations on the Chatham transect (CH1, CH2, and CH3). Both surface-water and groundwater levels, salinities, and temperatures were monitored at the paired gaging stations. Rainfall was recorded at marsh and open canopy gaging stations. This report details the study introduction, method, and description of data collected, which are accessible through the final instantaneous hydrologic dataset stored in the USGS South Florida Information Access (SOFIA) South Florida Hydrology Database website, http://sofia.usgs.gov/exchange/sfl_hydro_data/location.html#brdlandmargin .

Florida↗

USGS1975

Palynological evidence for late Cretaceous, Paleocene, and early and middle Eocene ages for strata in the kaolin belt, central Georgia

Falynomorphs of Late Cretaceous (Maestrichtian), Paleocene, Paleocene or early Eocene (Wilcox), and middle Eocene (Claiborne) ages have been found in lignitic and carbonaceous clays and silts in the Tuscaloosa Formation, as used in central and east-central Georgia. The occurrence of palynomorphs of Maestrichtian (Navarro) age above thick kaolin deposits at one locality and a suite of Claiborne age fossils below a thick deposit at another locality establish that kaolins of both Late Cretaceous and middle Eocene or younger ages are present. However, the recognition of the Paleocene and middle Eocene beds in the Tuscaloosa Formation of several authors indicates that part of it is much younger than previously thought. The palynomorphs and other characteristics of the carbonaceous materials of Cretaceous and middle Eocene ages indicate freshwater accumulation. The beds of Paleocene age contain both terrestrial and marine forms indicating deposition in marine swamps or estuaries. These findings and the range in ages support the conclusion that the deptositional history of the Late Cretaceous and early Tertiary formations in Georgia is complex.

Georgia↗

USGS2025

Beyond the mangroves: A global synthesis of tidal forested wetland types, drivers and future information opportunities

There is increasing awareness of the global diversity of tidal forested wetlands (TFWs) and their significance in the provision of ecosystem services. These ecosystems, including mangrove forests, tidal freshwater forested wetlands, supratidal forests and transitional forests together span multiple climatic zones, geomorphic settings, and inundation and salinity regimes. We utilise case studies across five continents to demonstrate the state of knowledge among TFWs. Intertidal mangroves are the best-defined of the TFWs thanks to decades of research on their geomorphology, hydrology and ecology across their broad distribution. Non-mangrove forest settings, however, demonstrate more diverse hydrological, biochemical and vegetation conditions. In many cases, non-mangrove forests are situated at upper intertidal or supratidal elevations, where surface waters and groundwater are subject to interactions between tides freshwater inputs. Salinity datasets show variations ranging from tidal freshwater forested wetlands and ‘low-salinity mangroves’ to mesohaline or marine salinities, often with high temporal variability. While the floristic composition of non-mangrove forests vary among biogeographic regions, locally dominant TFW species are commonly distributed beyond the tidal niche into non-tidal wetland and upland forests. This presents challenges for traditional remote sensing approaches to ecosystem mapping, which are mostly lacking for non-mangrove forests. Geomorphic approaches and developments in machine learning offer opportunities to address this.

Preprint↗

USGS2003

Effects of hydrology on red mangrove recruits

Coastal wetlands along the Gulf of Mexico have been experiencing significant shifts in hydrology and salinity levels over the past century as a result of changes in sea level and freshwater drainage patterns. Local land management in coastal zones has also impacted the hydrologic regimes of salt marshes and mangrove areas. Parks and refuges in south Florida that contain mangrove forests have, in some cases, been ditched or impounded to control mosquito outbreaks and to foster wildlife use. And while mangroves dominate the subtropical coastlines of Florida and thrive in saltwater environments, little is known about how they respond to changes in hydrology under managed or variable tidal conditions. USGS researchers designed a study to evaluate the basic hydrological requirements of mangroves so that their health and survival may be more effectively managed in controlled impoundments and restored wetlands. Mangroves are commonly found in the intertidal zone (between low and high tides) in a rather broad spectrum of hydrologic settings. Because they thrive at the interface of land and sea, mangroves are subject to changes in freshwater flow (flow rate, nutrients, pollutants) and to marine influences (sea-level rise, salinity). Salinity has long been recognized as a controlling factor that determines the health and distribution of mangrove forests. Field and experimental observations indicate that most mangrove species achieve their highest growth potential under brackish conditions (modest salinity) between 10 and 20 parts per thousand (ppt). Yet, if provided with available propagules, successful regeneration, and limited competition from other plants, then mangroves can survive and thrive in freshwater systems as well. Because little is known about the growthand survival patterns of mangrove species relative to changing hydrology, USGS scientists conducted greenhouse and field experiments to determine how flooded or drained patterns of hydrology would influence growth of the red mangrove, Rhizophora mangle (fig. 1). Red mangrove propagules (recruits) of select sizes and genotypes (i.e., genetically similar groups) were planted both in greenhouses and in the field. Seedling growth was monitored in both studies on a quarterly basis for over a year; measurements included shoot growth, seedling height, and a final harvest of plant biomass.

Fact Sheet↗

USGS2015

Habitats of North American sea ducks.

Breeding, molting, fall and spring staging, and wintering habitats of the sea duck tribe Mergini are described based on geographic locations and distribution in North America, geomorphology, vegetation and soil types, and fresh water and marine characteristics. The dynamics of habitats are discussed in light of natural and anthropogenic events that shape areas important to sea ducks. Strategies for sea duck habitat management are outlined and recommendations for international collaboration to preserve key terrestrial and aquatic habitats are advanced. We follow the definition of habitat advanced by Odum (1971), which is the place or space where an organism lives. Weller (1999) emphasized that habitats for waterbirds required presence of sufficient resources (i.e., food, water, cover, space) for maintenance during a portion of their annual cycle. Habitats exploited by North American sea ducks are diverse, widespread across the continent and adjacent marine waters and until recently, most were only superficially known. A 15-year-long effort funded research on sea duck habitats through the Sea Duck Joint Venture and the Endangered or Threatened Species programs of the United States and Canada. Nevertheless, important gaps remain in our understanding of key elements required by some species during various life stages. Many significant habitats, especially staging and wintering sites, have been and continue to be destroyed or altered by anthropogenic activities. The goal of this chapter is to develop a comprehensive summary of marine, freshwater, and terrestrial habitats and their characteristics by considering sea duck species with similar needs as groups within the tribe Mergini. Additionally, we examine threats and changes to sea duck habitats from human-caused and natural events. Last, we evaluate conservation and management programs underway or available for maintenance and enhancement of habitats critical for sea ducks.

Book chapter↗

USGS2010

Relationship and variation of qPCR and culturable enterococci estimates in ambient surface waters are predictable

The quantitative polymerase chain reaction (qPCR) method provides rapid estimates of fecal indicator bacteria densities that have been indicated to be useful in the assessment of water quality. Primarily because this method provides faster results than standard culture-based methods, the U.S. Environmental Protection Agency is currently considering its use as a basis for revised ambient water quality criteria. In anticipation of this possibility, we sought to examine the relationship between qPCR-based and culture-based estimates of enterococci in surface waters. Using data from several research groups, we compared enterococci estimates by the two methods in water samples collected from 37 sites across the United States. A consistent linear pattern in the relationship between cell equivalents (CCE), based on the qPCR method, and colony-forming units (CFU), based on the traditional culturable method, was significant (P < 0.05) at most sites. A linearly decreasing variance of CCE with increasing CFU levels was significant (P < 0.05) or evident for all sites. Both marine and freshwater sites under continuous influence of point-source contamination tended to reveal a relatively constant proportion of CCE to CFU. The consistency in the mean and variance patterns of CCE versus CFU indicates that the relationship of results based on these two methods is more predictable at high CFU levels (e.g., log 10 CFU > 2.0/100 mL) while uncertainty increases at lower CFU values. It was further noted that the relative error in replicated qPCR estimates was generally higher than that in replicated culture counts even at relatively high target levels, suggesting a greater need for replicated analyses in the qPCR method to reduce relative error. Further studies evaluating the relationship between culture and qPCR should take into account analytical uncertainty as well as potential differences in results of these methods that may arise from sample variability, different sources of pollution, and environmental factors.

Environmental Science & Technology↗

USGS2024

A video monitoring and computational system for estimating migratory juvenile fish abundance in river systems

Diadromous fishes migrate between marine and fresh waters for reproduction. For anadromous species, which spawn in freshwater, improved access to freshwater spawning and nursery habitats and ability of juveniles to emigrate to the ocean may support population recovery. Despite the potentially enormous influence of early life stage survival on adult population size, managers and scientists have limited capacity to assess numbers of juvenile anadromous fishes leaving freshwater ecosystems. Such data are critical for evaluating reproductive success and habitat suitability and have been identified as a top priority in anadromous fish research and management. We developed a state-of-the-art underwater video and computational system to collect videos to estimate abundances and migration timing for juvenile river herring ( Alosa pseudoharengus ; Alosa aestivalis ). We collected continuous video in the Monument River (Bourne, Massachusetts, USA) from June to November 2017. We trained three types of neural network models to detect and count fish in video frames and evaluated model performance by comparing human counts to model outputs. Our top model assessed presence and absence ( F 1 = 87%) and counted fish (counting error 9.4%) with an accuracy comparable to human counters ( F 1 = 88%). Our system's capability to collect accurate counts of emigrating juveniles will provide critical information that could be related to the numbers of spawning adults, system-specific productivity, and spawning and nursery habitat suitability. Both the video collection system and computational model may be transferrable to other sites and for other species where tracking juvenile emigration may inform management efforts.

Massachusetts↗

USGS1974

Continental depositon of Antarctic tillite indicated by carbon and oxygen isotopes

Freshwater deposition of the upper Paleozoic, Gondwana tillite in the Pensacola Mountains is indicated by low δ values of +4.9 to +6.1 permil δ0 1 8 (SMOW) and -1.8 to -15.9 permil δC 1 3 (PDB) in primary sedimentary calcite within the tillite. In contrast, Cambrian marine limestone from the Pensacola Mountains contains heavy isotopic abundances that are entirely characteristic of marine deposition.

Journal of Research of the U.S. Geological Survey↗

USGS2020

Genetic diversity, population structure, and historical demography of a highly vagile and human‐impacted seabird in the Pacific Ocean: The red‐tailed tropicbird, Phaethon rubricauda

Many seabird breeding colonies have recovered from heavy anthropogenic disturbance after conservation actions. The widely distributed red‐tailed tropicbird, Phaethon rubricauda , was used as a model species to assess potential anthropogenic impacts on the genetic diversity of breeding colonies in the Pacific Ocean. Cytochrome c oxidase subunit I and control region sequences analyses were conducted across the range of the species in the Pacific Ocean. The study sites were at islands without human‐related disturbance (non‐impacted islands) and with human‐related disturbance (impacted islands). We hypothesized that (i) breeding colonies of the red‐tailed tropicbird on impacted islands have lower genetic diversity compared with colonies on non‐impacted islands, and (ii) breeding colonies of the red‐tailed tropicbird show significant fine and broad‐scale genetic structure across the Pacific Ocean. Bayesian skyline analyses were conducted to infer past changes in population sizes. Genetic diversity was similar between impacted and non‐impacted islands. There was significant broad‐scale genetic structure among colonies separated by over 6,000 km, but a lack of significant fine‐scale genetic structure within Australasia and Hawai'i, although a significant level of differentiation was found within Chile with Φ ST analyses. Skyline analyses showed that effective population sizes remained relatively constant through time, but experienced either a slight decrease or the end of an expansion event through the last 1,000 years. These changes may be related to the arrival of humans on Pacific islands. Impacted islands may have received immigrants from other relatively close islands, buffering the loss of genetic diversity. However, it is also possible that colonies have retained ancestral variation or that a large effective population size coupled with a long generation time (13 years) has prevented the loss of genetic diversity in human‐impacted islands. Future research using higher‐resolution markers is needed to resolve the population genetic structure of the red‐tailed tropicbird in an ecological time‐scale.

Hawaii↗

USGS2023

Adult spawners: A critical period for subarctic Chinook salmon in a changing climate

Concurrent, distribution-wide abundance declines of some Pacific salmon species, including Chinook salmon ( Oncorhynchus tshawytscha ), highlights the need to understand how vulnerability at different life stages to climate stressors affects population dynamics and fisheries sustainability. Yukon River Chinook salmon stocks are among the largest subarctic populations, near the northernmost extent of the species range. Existing research suggests that Yukon River Chinook salmon population dynamics are largely driven by factors occurring between the adult spawner life stage and their offspring's first summer at sea (second year post-hatching). However, specific mechanisms sustaining chronic poor productivity are unknown, and there is a tremendous sense of urgency to understand causes, as declines of these stocks have taken a serious toll on commercial, recreational, and indigenous subsistence fisheries. Therefore, we leveraged multiple existing datasets spanning parent and juvenile stages of life history in freshwater and marine habitats. We analyzed environmental data in association with the production of offspring that survive to the marine juvenile stage (juveniles per spawner). These analyses suggest more than 45% of the variability in the production of juvenile Chinook salmon is associated with river temperatures or water discharge levels during the parent spawning migration. Over the past two decades, parents that experienced warmer water temperatures and lower discharge in the mainstem Yukon River produced fewer juveniles per spawning adult. We propose the adult spawner life stage as a critical period regulating population dynamics. We also propose a conceptual model that can explain associations between population dynamics and climate stressors using independent data focused on marine nutrition and freshwater heat stress. It is sobering to consider that some of the northernmost Pacific salmon habitats may already be unfavorable to these cold-water species. Our findings have immediate implications, given the common assumption that northern ranges of Pacific salmon offer refugia from climate stressors.

Alaska↗

USGS2021

A science agenda to inform natural resource management decisions in an era of ecological transformation

Earth is experiencing widespread ecological transformation in terrestrial, freshwater, and marine ecosystems that is attributable to directional environmental changes, especially intensifying climate change. To better steward ecosystems facing unprecedented and lasting change, a new management paradigm is forming, supported by a decision-oriented framework that presents three distinct management choices: resist, accept, or direct the ecological trajectory. To make these choices strategically, managers seek to understand the nature of the transformation that could occur if change is accepted while identifying opportunities to intervene to resist or direct change. In this article, we seek to inspire a research agenda for transformation science that is focused on ecological and social science and based on five central questions that align with the resist–accept–direct (RAD) framework. Development of transformation science is needed to apply the RAD framework and support natural resource management and conservation on our rapidly changing planet.

BioScience↗

USGS2010

Gulf of Mexico dead zone - 1000 year record

An area of oxygen-depleted bottom- and subsurfacewater (hypoxia = dissolved oxygen < 2 mg per Liter) occurs seasonally on the Louisiana shelf near the Mississippi River. The area of hypoxia, also known as the 'dead zone,' forms when spring and early summer freshwater flow from the Mississippi River supplies a large amount of nutrients to the shelf while creating a freshwater lens, or cap, above the shelf water. The excess nutrients cause phytoplankton blooms in the shallow shelf water. After the bloom ceases, the organic material sinks in the water column and uses up oxygen during decomposition. Thus, the subsurface waters become oxygen depleted. The seasonal dead zone exists until a reduction in freshwater flow, or overturning by storms, allows mixing of the water column to restore normal oxygen conditions. Since systematic measurement of the extent of the dead zone was begun in 1985, the overall pattern indicates that the area of the dead zone is increasing. Several studies have concluded that the expansion of the Louisiana shelf dead zone is related to increased nutrients (primarily nitrogen, but possibly also phosphorous) in the Mississippi River drainage basin and is responsible for the degradation of Gulf of Mexico marine habitats. The goal of this research is to augment information on the recent expansion of Louisiana shelf hypoxia and to investigate the temporal and geographic extent of the lowoxygen bottom-water conditions prior to 1985 in sediment cores collected from the Louisiana shelf. We use a specific low-oxygen faunal proxy termed the PEB index based on the cumulative percentage of three foraminifers (= % Protononion atlanticum, + % Epistominella vitrea, + % Buliminella morgani) that has been shown statistically to represent the modern seasonal Louisiana hypoxia zone. Our hypothesis is that the increased relative abundance of PEB species in dated sediment cores accurately tracks past seasonal low-oxygen conditions on the Louisiana shelf.

Gulf Of Mexico↗

USGS2009

Estuarine Ecology of Juvenile Salmon in Western Alaska: a Review

In the late 1990s and early 2000s, large declines in numbers of chum salmon Oncorhynchus keta and Chinook salmon O. tshawytscha returning to the Arctic-YukonKuskokwim (AYK) region (Alaska, USA) illuminated the need for an improved understanding of the variables controlling salmon abundance at all life stages. In addressing questions about salmon abundance, large gaps in our knowledge of basic salmon life history and the critical early marine life stage were revealed. In this paper, results from studies conducted on the estuarine ecology of juvenile salmon in western Alaska are summarized and compared, emphasizing timing and distribution during outmigration, environmental conditions, age and growth, feeding, and energy content of salmon smolts. In western Alaska, water temperature dramatically changes with season, ranging from 0°C after ice melt in late spring/early summer to 19°C in July. Juvenile salmon were found in AYK estuaries from early May until August or September, but to date no information is available on their residence duration or survival probability. Chum salmon were the most abundant juvenile salmon reported, ranging in percent catch from <0.1% to 4.7% and most research effort has focused on this species. Abundances of Chinook salmon, sockeye salmon O. nerka, and pink salmon O. gorbuscha varied among estuaries, while coho salmon O. kisutch juveniles were consistently rare, never amounting to more than 0.8% of the catch. Dietary composition of juvenile salmon was highly variable and a shift was commonly reported from epibenthic and neustonic prey in lower salinity water to pelagic prey in higher salinity water. Gaps in the knowledge of AYK salmon estuarine ecology are still evident. For example, data on outmigration patterns and residence timing and duration, rearing conditions and their effect on diet, growth, and survival are often completely lacking or available only for few selected years and sites. Filling gaps in knowledge concerning salmon use and survival in estuarine and near-shore habitats within the AYK region will aid in assessing the relative roles of all habitats (freshwater to marine) in controlling salmon abundance.

Alaska↗

USGS2007

Viability criteria for steelhead of the south-central and southern California coast

Recovery planning for threatened and endangered steelhead requires measurable, objective criteria for determining an acceptably low risk of extinction. Here we propose viability criteria for two levels of biological organization: individual populations, and groups of populations within the SouthCentral/Southern California Coast Steelhead Recovery Planning Domain. For populations, we adapt criteria commonly used by the IUCN (The World Conservation Union) for identifying at-risk species. For groups of populations we implement a diversity-based “representation and redundancy rule,” in which diversity includes both life-history diversity and biogeographic groupings of populations. The resulting criteria have the potential for straightforward assessment of the risks posed by evolutionary, demographic, environmental, and catastrophic factors; and are designed to use data that are readily collected. However, our prescriptive approach led to one criterion whose threshold could not yet be specified due to inadequate data, and others in which the simplicity of the criteria may render them inefficient for populations with stable run sizes or stable life-history polymorphisms. Both of these problems could likely be solved by directed programs of research and monitoring aimed at developing more efficient (but equally risk-averse) “performance-based criteria.” Of particular utility would be data on the natural fluctuations of populations, research into the stabilizing influence of life-history polymorphisms, and research on the implications of drought, wildfires, and fluvial sediment regimes. Research on estuarine habitat could also yield useful information on the generality and reliability of its role as nursery habitat. Currently, risk assessment at the population level is not possible due to data deficiency, highlighting the need to implement a comprehensive effort to monitor run sizes, anadromous fractions, spawner densities and perhaps marine survival. Assessment at the group level indicates a priority for securing inland populations in the southern Coast Ranges and Transverse Ranges, and a need to maintain not just the fluvial-anadromous life-history form, but also lagoon-anadromous and freshwater-resident forms in each population.

Report↗