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At least 73 records · Page 4Linked to original sources

The humpbacked species richness-curve: A contingent rule for community ecology

Functional relationships involving species richness may be unimodal, monotonically increasing, monotonically decreasing, bimodal, multimodal, U-shaped, or with no discernable pattern. The unimodal relationships are the most interesting because they suggest dynamic, nonequilibrium community processes. For that reason, they are also contentious. In this paper, we provide a wide-ranging review of the literature on unimodal (humpbacked) species richness-relationships. Though not as widespread as previously thought, unimodal patterns of species richness are often associated with disturbance, predation and herbivory, productivity, spatial heterogeneity, environmental gradients, time, and latitude. These unimodal patterns are contingent on organism and environment; we examine unimodal species richness-curves involving plants, invertebrates, vertebrates, plankton, and microbes in marine, lacustrine, and terrestrial habitats. A goal of future research is to understand the contingent patterns and the complex, interacting processes that generate them.

International Journal of Ecology

Moderate-resolution sea surface temperature data and seasonal pattern analysis for the Arctic Ocean ecoregions

Sea surface temperature (SST) is an important environmental characteristic in determining the suitability and sustainability of habitats for marine organisms. In particular, the fate of the Arctic Ocean, which provides critical habitat to commercially important fish, is in question. This poses an intriguing problem for future research of Arctic environments - one that will require examination of long-term SST records. This publication describes and provides access to an easy-to-use Arctic SST dataset for ecologists, biogeographers, oceanographers, and other scientists conducting research on habitats and/or processes in the Arctic Ocean. The data cover the Arctic ecoregions as defined by the "Marine Ecoregions of the World" (MEOW) biogeographic schema developed by The Nature Conservancy as well as the region to the north from approximately 46°N to about 88°N (constrained by the season and data coverage). The data span a 29-year period from September 1981 to December 2009. These SST data were derived from Advanced Very High Resolution Radiometer (AVHRR) instrument measurements that had been compiled into monthly means at 4-kilometer grid cell spatial resolution. The processed data files are available in ArcGIS geospatial datasets (raster and point shapefiles) and also are provided in text (.csv) format. All data except the raster files include attributes identifying latitude/longitude coordinates, and realm, province, and ecoregion as defined by the MEOW classification schema. A seasonal analysis of these Arctic ecoregions reveals a wide range of SSTs experienced throughout the Arctic, both over the course of an annual cycle and within each month of that cycle. Sea ice distribution plays a major role in SST regulation in all Arctic ecoregions.

Open-File Report

Can you hear me now? Range-testing a submerged passive acoustic receiver array in a Caribbean coral reef habitat

Submerged passive acoustic technology allows researchers to investigate spatial and temporal movement patterns of many marine and freshwater species. The technology uses receivers to detect and record acoustic transmissions emitted from tags attached to an individual. Acoustic signal strength naturally attenuates over distance, but numerous environmental variables also affect the probability a tag is detected. Knowledge of receiver range is crucial for designing acoustic arrays and analyzing telemetry data. Here, we present a method for testing a relatively large-scale receiver array in a dynamic Caribbean coastal environment intended for long-term monitoring of multiple species. The U.S. Geological Survey and several academic institutions in collaboration with resource management at Buck Island Reef National Monument (BIRNM), off the coast of St. Croix, recently deployed a 52 passive acoustic receiver array. We targeted 19 array-representative receivers for range-testing by submersing fixed delay interval range-testing tags at various distance intervals in each cardinal direction from a receiver for a minimum of an hour. Using a generalized linear mixed model (GLMM), we estimated the probability of detection across the array and assessed the effect of water depth, habitat, wind, temperature, and time of day on the probability of detection. The predicted probability of detection across the entire array at 100 m distance from a receiver was 58.2% (95% CI: 44.0–73.0%) and dropped to 26.0% (95% CI: 11.4–39.3%) 200 m from a receiver indicating a somewhat constrained effective detection range. Detection probability varied across habitat classes with the greatest effective detection range occurring in homogenous sand substrate and the smallest in high rugosity reef. Predicted probability of detection across BIRNM highlights potential gaps in coverage using the current array as well as limitations of passive acoustic technology within a complex coral reef environment.

Ecology and Evolution

Exploitation of marine mammals: r-selection of K-strategists?

The importance of marine mammals as predators to the organization of marine communities is poorly known, although in several structurally analogous systems the ecological and evolutionary roles of predators are known to be of considerable importance. Occupation of the marine environment by mammals probably carried physiological constraints for single-young pregnancies thereby limiting all species to low intrinsic rates of population increase. As such, species subjected to high mortality rates from predation or other natural disturbances became extinct; those that survived probably were largely resource limited. In view of this scenario it is suggested that stable populations of marine mammals can be maintained at high levels without being manipulated in most communities. Exploitation probably constitutes a rather dramatic environmental change to marine mammals consequently subjecting them to selective forces fundamentally different from many of those under the influence of which they evolved.

Journal of the Fisheries Research Board of Canada

Coastal and marine science of the U.S. Geological Survey in St. Petersburg, Florida

The U.S. Geological Survey (USGS) St. Petersburg Coastal and Marine Science Center (SPCMSC) in St. Petersburg, Florida, investigates processes that form and alter coastal and marine environments and the implications of these processes related to natural hazards, resource sustainability, and environmental change. The center is one of three facilities serving the mission of the USGS Coastal and Marine Hazards and Resources Program, an initiative authorized by Congress in 1962 that serves as the primary Federal program for marine geology and physical science research and is responsible for the Nation’s entire coastal and marine landscape. The center’s staff conducts scientific research around the globe to describe and deepen understanding of the processes that influence coastal and marine ecosystems, such as sandy beaches and barrier islands, salt marshes and estuaries, coral reefs, and the open ocean from the continental shelf to the deep sea. The center includes a diverse workforce of scientists, technicians, administrators, analysts, and technology and information specialists. This team works collaboratively to conduct and share robust scientific research. This document provides a glimpse into the center’s work to better understand the processes shaping coastal and marine environments across the Nation.

Florida

Regional estimates of reef carbonate dynamics and productivity Using Landsat 7 ETM+, and potential impacts from ocean acidification

Using imagery at 30 m spatial resolution from the most recent Landsat satellite, the Landsat 7 Enhanced Thematic Mapper Plus (ETM+), we scale up reef metabolic productivity and calcification from local habitat-scale (10 -1 to 10 0 km 2 ) measurements to regional scales (10 3 to 10 4 km 2 ). Distribution and spatial extent of the North Florida Reef Tract (NFRT) habitats come from supervised classification of the Landsat imagery within independent Landsat-derived Millennium Coral Reef Map geomorphologic classes. This system minimizes the depth range and variability of benthic habitat characteristics found in the area of supervised classification and limits misclassification. Classification of Landsat imagery into 5 biotopes (sand, dense live cover, sparse live cover, seagrass, and sparse seagrass) by geomorphologic class is >73% accurate at regional scales. Based on recently published habitat-scale in situ metabolic measurements, gross production (P = 3.01 ?? 10 9 kg C yr -1 ), excess production (E = -5.70 ?? 10 8 kg C yr -1 ), and calcification (G = -1.68 ?? 10 6 kg CaCO 3 yr -1 ) are estimated over 2711 km 2 of the NFRT. Simple models suggest sensitivity of these values to ocean acidification, which will increase local dissolution of carbonate sediments. Similar approaches could be applied over large areas with poorly constrained bathymetry or water column properties and minimal metabolic sampling. This tool has potential applications for modeling and monitoring large-scale environmental impacts on reef productivity, such as the influence of ocean acidification on coral reef environments. ?? Inter-Research 2009.

Marine Ecology Progress Series

USGS St. Petersburg Coastal and Marine Science Center

Extreme storms, sea-level rise, and the health of marine communities are some of the major societal and environmental issues impacting our Nation's marine and coastal realm. The U.S. Geological Survey (USGS) in St. Petersburg, Fla., investigates processes related to these ecosystems and the societal implications of natural hazards and resource sustainability. As one of three centers nationwide conducting research within the USGS Coastal and Marine Geology Program, the center is integral towards developing an understanding of physical processes that will contribute to rational decisions regarding the use and stewardship of national coastal and marine environments.

Florida

Atlantic Salmon (Salmo salar) climate scenario planning pilot report

Scenario planning is a structured process that embraces uncertainty and explores plausible alternative future conditions under different assumptions to help manage risk and prioritize actions ( Schwartz 1996, Peterson et al . 2003). It has been used by a variety of organizations to explore and help prepare for the future, lends itself well to exploring the uncertainty surrounding changing environmental conditions, and is widely applicable to natural resource management issues. The conservation and management of protected resources for example, can be particularly challenging when the rate and magnitude of climate-related changes, and the response of species to those changes, are uncertain (NMFS 2016). The structured process of scenario planning can help resource managers navigate through potentially paralyzing uncertainties, manage risk, and evaluate/prioritize management actions associated with adapting to, and managing for, climate change (Moore et al . 2013). Atlantic salmon ( Salmo salar ) is a species highly vulnerable to climate change in the Northeast Atlantic (Hare et al . 2016a). Based on this and the above reasons, a scenario planning initiative was piloted by NOAA Fisheries to explore what the agency can do to improve U.S.Atlantic salmon population resilience to changing climate conditions in riverine, estuarine(transition), and marine environments across its current range (U.S. headwaters to Greenland). Project objectives were: 1) to better understand the challenges of managing Atlantic salmon in a changing climate; 2) to identify and discuss potential management actions and research activities that can be undertaken to increase our understanding of the drivers of Atlantic salmon productivity and resilience; 3) to increase collaborations and coordination related to the speciesrecovery; and 4) to explore how scenario planning can be used to support decisions. Outcomes from this initiative included, but were not limited to, the identification of high priority research and management actions to further collaborations and efforts to recover this species. The identified high priority actions were those that could be undertaken in the near-term(1-5 years) using current resources and in consideration of potential future conditions. Examples of identified actions by habitat (not in order of priority) included: 1) synthesize and refine range-wide life stage specific quantitative environmental thresholds for temperature, flow, etc.; 2) assess watershed habitat productivity; 3) assess forage fish and survival connection and options for marine migration monitoring; and 4) reduce dam-associated indirect estuarine mortality rate. In addition, a number of high priority climate-related actions were included in the revised Atlantic Salmon Recovery Plan (USFWS and NMFS 2019, Appendix 16) and at least two newly NOAA Fisheries funded projects are now underway (1. conduct range-wide habitat analysis and synthesize life stage specific quantitative thresholds and 2. identify locations of cold water refugia under a changing climate). This is the first use of the scenario planning process (NPS 2013) by NOAA Fisheries. This report documents an important example of applying scenario planning to marine species/environments and may serve as a useful reference for other case studies.

Atlantic Ocean

Seabird tissue archival and monitoring project: Egg collections and analytical results 1999-2002

In 1998, the U.S. Geological Survey Biological Resources Division (USGS-BRD), the U.S. Fish and Wildlife Service (USFWS) Alaska Maritime National Wildlife Refuge (AMNWR), and the National Institute of Standards and Technology (NIST) began the Seabird Tissue Archival and Monitoring Project (STAMP) to collect and cryogenically bank tissues from seabirds in Alaska for future retrospective analysis of anthropogenic contaminants. The approach of STAMP was similar to that of the Alaska Marine Mammal Tissue Archival Project (AMMTAP). AMMTAP was started in 1987 by NIST and the National Oceanic and Atmospheric Administration (NOAA) as part of the Outer Continental Shelf Environmental Assessment Program sponsored by the Minerals Management Service. Presently sponsored by the USGS-BRD, AMMTAP continues its work as part of a larger national program, the Marine Mammal Health and Stranding Response Program. AMMTAP developed carefully designed sampling and specimen banking protocols. Since 1987, AMMTAP has collected tissues from marine mammals taken in Alaska Native subsistence hunts and has cryogenically banked these tissues at the NIST National Biomonitoring Specimen Bank (NBSB). Through its own analytical work and working in partnership with other researchers both within and outside Alaska, AMMTAP has helped to develop a substantial database on contaminants in Alaska marine mammals. In contrast, data and information is limited on contaminants in Alaska seabirds, which are similar to marine mammals in that they feed near the top of the food chain and have the potential for accumulating anthropogenic contaminants. During its early planning stages, STAMP managers identified the seabird egg as the first tissue of choice for study by the project. There is a relatively long history of using bird eggs for environmental monitoring and for investigating the health status of bird populations. Since 1998, protocols for collecting and processing eggs, and cryogenically banking egg samples have been developed by STAMP (see York et al. 2001). Eggs are being collected on an annual basis for several species at nesting colonies throughout Alaska. Aliquots of these egg samples are being analyzed on a regular basis for persistent organic pollutants and mercury. Results of this work have been published in scientific journals (Christopher et al. 2002) and in conference proceedings (Kucklick et al. 2002; Vander Pol et al. 2002a, 2002b). The intent of this report is to provide an up-to-date description of STAMP. The report contains the most recent egg collection inventory, analytical data, preliminary interpretations based on these data, and a discussion of possible future directions of the project.

Report

Mapping of Florida's coastal and marine resources: Setting priorities workshop

The importance of mapping habitats and bioregions as a means to improve resource management has become increasingly clear. Large areas of the waters surrounding Florida are unmapped or incompletely mapped, possibly hindering proper management and good decisionmaking. Mapping of these ecosystems is among the top priorities identified by the Florida Oceans and Coastal Council in their Annual Science Research Plan. However, lack of prioritization among the coastal and marine areas and lack of coordination of agency efforts impede efficient, cost–effective mapping. A workshop on Mapping of Florida’s Coastal and Marine Resources was sponsored by the U.S. Geological Survey (USGS), Florida Department of Environmental Protection (FDEP), and Southeastern Regional Partnership for Planning and Sustainability (SERPPAS). The workshop was held at the USGS Florida Integrated Science Center (FISC) in St. Petersburg, FL, on February 7-8, 2007. The workshop was designed to provide State, Federal, university, and non-governmental organizations (NGOs) the opportunity to discuss their existing data coverage and create a prioritization of areas for new mapping data in Florida. Specific goals of the workshop were multifold, including to: provide information to agencies on state-of-the-art technology for collecting data; inform participants of the ongoing mapping programs in waters off Florida; present the mapping needs and priorities of the State and Federal agencies and entities operating in Florida; work with State of Florida agencies to establish an overall priority for areas needing mapping; initiate discussion of a unified classification of habitat and bioregions; discuss and examine the need to standardize terminology and data collection/storage so that data, in particular habitat data, can be shared; identify opportunities for partnering and leveraging mapping efforts among agencies and entities; identify impediments and organizational gaps that hinder collection of data for mapping; seek innovative solutions to the primary obstacles identified; identify the steps needed to move mapping of Florida’s oceans and coasts forward, in preparation for a better coordinated, more cost-effective mapping program to allow State and Federal agencies to make better decisions on coastal-resource issues. Over 90 invited participants representing more than 30 State and Federal agencies, universities, NGOs, and private industries played a large role in the success of this two-day workshop. State of Florida agency participants created a ranked priority order for mapping 13 different regions around Florida. The data needed for each of the 13 priority regions were outlined. A matrix considering State and Federal priorities was created, utilizing input from all agencies. The matrix showed overlapping interests of the entities and will allow for partnering and leveraging of resources. The five most basic mapping needs were determined to be bathymetry, high-vertical resolution coastline for sea-level rise scenarios, shoreline change, subsurface geology, and benthic habitats at sufficient scale. There was a clear convergence on the need to coordinate mapping activities around the state. Suggestions for coordination included: creating a glossary of terms: a standard for specifying agency data-mapping needs; creating a geographic information officer (GIO) position or permanent organizing group to maintain communications established at this workshop and to maintain progress on the issues identified during the workshop. The person or group could develop a website, maintain a project-status matrix, develop a list of contacts, create links to legislative updates and links to funding sources; developing a web portal and one-stop/clearinghouse of data. There was general consensus on the need to adopt a single habitat classification system and a strategy to accommodate existing systems smoothly. Unresolved aspects of the systems warrant that a separate workshop would be needed to work out details. Participants recognized that the State priority list would necessarily be updated periodically. An annual review of priorities would facilitate information exchange, mapping activities updates, and re-allocation of funding among changing priorities. It was recognized that mapping of State waters would take billions of dollars and in light of tightening budgets there was need for processes that could be used to appropriate or leverage monies for mapping and reduce data-collection costs. Fourteen different avenues were explored. There was a clear consensus that the linking of public to private partnerships to support mapping was imperative, and ways to achieve this were discussed.

Florida

Dreissenid mussel research priorities workshop

Currently, dreissenid mussels have yet to be detected in the northwestern part of the United States and western Canada. Infestation of one of the jurisdictions within the mussel-free Pacific Northwest would likely have significant economic, soci­etal and environmental implications for the entire region. Understanding the biology and environmental tolerances of dreissenid mussels, and effectiveness of various man­agement strategies, is key to prevention. On November 4-5, 2015, the Aquatic Bioinvasion Research and Policy Institute and the Center for Lakes and Reservoirs at Portland State University, the US Geological Survey, and the Pacific States Marine Fisheries Commission, convened a Dreissenid Mussel Research Priorities Workshop funded by the Great Northern Landscape Conservation Cooperative. The purpose of the workshop was to review dreissenid research priorities in the 2010 Quagga-Zebra Mussel Action Plan for Western U.S. Waters, reassess those priorities, incorporate new information and emerging trends, and develop priorities to strategically focus research efforts on zebra and quagga mussels in the Pacific Northwest and ensure that future research is focused on the highest priorities. It is important to note that there is some repetition among dreissenid research priority categories (e.g., prevention, detection, control, monitoring, and biology). Workshop participants with research experience in dreissenid mussel biology and management were identified by a literature review. State and federal agency managers were also invited to the workshop to ensure relevancy and practicality of the work­shop outcomes. A total of 28 experts (see sidebar) in mussel biology, ecology, and management attended the workshop.

Conference Paper

Robotic environmental DNA bio-surveillance of freshwater health

Autonomous water sampling technologies may help to overcome the human resource challenges of monitoring biological threats to rivers over long time periods and large geographic areas. The Monterey Bay Aquarium Research Institute has pioneered a robotic Environmental Sample Processor (ESP) that overcomes some of the constraints associated with traditional sampling since it can automate water sample filtration and preservation of the captured material or homogenize it for immediate analyses in situ. The ESP was originally developed for marine environment applications. Here we evaluated whether the ESP can provide reliable, timely information on environmental (e)DNA detections of human and fish pathogens and introduced fishes at U.S. Geological Survey streamgage sites in freshwater rivers. We compared eDNA collected via ESP at high frequency (e.g., every 3 h) with manual eDNA collections collected at lower frequency (e.g., weekly). We found that water samples filtered and preserved by ESPs successfully detected the DNA of human pathogens, fish pathogens and introduced fishes. Both ESP and manually collected samples provided similar information about target DNA presence. We suggest that the greatest current benefit of the ESP is the cost savings of high frequency, bio-surveillance at remote or hard to access sites. The full potential of robotic technologies like the ESP will be realized when they can more easily execute in situ analyses of water samples and rapidly transmit results to decision-makers.

Idaho, Montana, Wyoming

Digital Seismic-Reflection Data from Eastern Rhode Island Sound and Vicinity, 1975-1980

During 1975 and 1980, the U.S. Geological Survey (USGS) conducted two seismic-reflection surveys in Rhode Island Sound (RIS) aboard the research vessel Asterias: cruise ASTR75-June surveyed eastern RIS in 1975 and cruise AST-80-6B surveyed southern RIS in 1980. Data from these surveys were recorded in analog form and archived at the USGS Woods Hole Coastal and Marine Science Center's Data Library. In response to recent interest in the geology of RIS and in an effort to make the data more readily accessible while preserving the original paper records, the seismic data from these cruises were scanned and converted to black and white Tagged Image File Format and grayscale Portable Network Graphics images and SEG-Y data files. Navigation data were converted from U.S. Coast Guard Long Range Aids to Navigation time delays to latitudes and longitudes that are available in Environmental Systems Research Institute, Inc., shapefile format and as eastings and northings in space-delimited text format. This report complements two others that contain analog seismic-reflection data from RIS (McMullen and others, 2009) and Long Island and Block Island Sounds (Poppe and others, 2002) and were converted into digital form.

Open-File Report

Processes influencing the transport and fate of contaminated sediments in the coastal ocean– Boston Harbor and Massachusetts Bay

Most of the major urban centers of the United States including Boston, New York, Washington, Chicago, New Orleans, Miami, Los Angeles, San Francisco, and Seattle—are on a coast (fig. 1.1). All of these cities discharge treated sewage effluent into adjacent waters. In 2000, 74 percent of the U.S. population lived within 200 kilometers (km) of the coast. Between 1980 and 2002, the population density in coastal communities increased approximately 4.5 times faster than in noncoastal areas of the U.S. (Perkins, 2004). More people generate larger volumes of wastes, increase the demands on wastewater treatment, expand the area of impervious land surfaces, and use more vehicles that contribute contaminants to street runoff. According to the National Coastal Condition Report II (U.S. Environmental Protection Agency, 2005a), on the basis of coastal habitat, water and sediment quality, benthic index, and fish tissue, the overall national coastal condition is only poor to fair and the overall coastal condition in the highly populated Northeast is poor. Scientific information helps managers to prioritize and regulate coastal-ocean uses that include recreation, commercial fishing, transportation, waste disposal, and critical habitat for marine organisms. These uses are often in conflict with each other and with environmental concerns. Developing a strategy for managing competing uses while maintaining sustainability of coastal resources requires scientific understanding of how the coastal ocean system behaves and how it responds to anthropogenic influences. This report provides a summary of a multidisciplinary research program designed to improve our understanding of the transport and fate of contaminants in Massachusetts coastal waters. Massachusetts Bay and Boston Harbor have been a focus of U.S. Geological Survey (USGS) research because they provide a diverse geographic setting for developing a scientific understanding of the geology, geochemistry, and oceanography of coastal systems in general. Scientific data from this region can also be used to inform decisions about important economic, environmental, and political issues. From the economic viewpoint, the annual value of tourism and shipping in Massachusetts and Cape Cod Bays is about $1.5 billion and $1.9 billion, respectively. Commercial and recreational fishing generates about $240 million per year in the same region (U.S. Environmental Protection Agency, 2005b). The environmental issue is the 300-year history of waste discharge from the Boston metropolitan area into the harbor. This history is punctuated by cycles of environmental degradation, public outcry, and improvements in the sewage treatment system. With each improvement, however, the continuous growth of population in greater Boston (fig. 1.2) and the resulting increase in the volume of waste exceeded the capacity of the treatment system, thereby setting the stage for a new contamination crisis. By the 1980s, the levels of contaminants in sediments of Boston Harbor were among the highest in the nation (National Oceanic and Atmospheric Administration, 1987). Fish were diseased, shellfish beds were closed, and swimming beaches were unsafe after heavy rains; in general, water quality and aesthetics were below acceptable standards. Legal and political issues have always been part of Boston Harbor’s history. The environmental conditions in the 1980s were highlighted in a 1983 legal suit brought by the city of Quincy against the Metropolitan District Commission (MDC, the state agency responsible for sewage treatment) and heads of three state agencies for discharging untreated or poorly treated sewage into the harbor (Dolin, 2004). The suit never went to trial, but through the actions of a Massachusetts Superior Court, the issue of Boston Harbor contamination remained on the political and public agenda. The judge called the harbor “unsafe, unsanitary, indecent, in violation of the law (Clean Water Act), and a danger to the health and welfare of the people” (Forman, 1984). To force the state legislature to implement a plan to improve harbor conditions, the judge threatened to place the MDC in receivership and curtail new sewage hookups for industry. Under intense lobbying by business, the legislature created the Massachusetts Water Resources Authority (MWRA) in December 1984. The independent MWRA was established to manage Boston’s waste treatment system and was given the authority to float bonds to pay for major improvements in the treatment system. In 1985, a Federal court began hearings on a suit brought by the Conservation Law Foundation, the Environmental Protection Agency (USEPA), and towns of Quincy and Winthrop against the MDC and MWRA (as heir to responsibilities of the MDC) for years of violation of the Clean Water Act. The judge ruled against the defendants and required all the parties to submit a construction plan and schedule for a new sewage treatment system. From these submissions, he developed a schedule for treatment system upgrades that would give the “citizens of this commonwealth a public assurance that Boston Harbor will be cleaned up within a defined period of time” (Dolin, 2004). The MWRA’s Boston Harbor cleanup program (Levy and Connor, 1992) has transformed the Boston sewage system. Key improvements were to (1) reduce contaminants at the industrial source; (2) remediate leaks in the sewage-collection system; (3) eliminate sewage sludge discharge to the harbor; (4) upgrade sewage treatment from primary to secondary; (5) construct a new ocean outfall 15.2 km offshore in Massachusetts Bay for discharge of treated effluent (fig. 1.3); and (6) implement improvements in the combined-sewer-overflow system. As part of the harbor cleanup program, the MWRA developed a comprehensive monitoring program (summarized in MWRA, 2004) to assess changes in the harbor and bays that specifically related to the new sewage system. Additional information about conditions and processes in the coastal system on a regional scale and over a long time period was and continues to be important in predicting and interpreting local change. Implementation of the MWRA’s program and the mission of the USGS to understand the geology of the nation’s offshore waters provided an opportunity to conduct a cooperative multidisciplinary research program. This USGS program addresses basic scientific questions as well as concerns raised by management regarding the design, implementation, and assessment of the new sewage treatment system. Already active in Boston Harbor during the late 1970s, the USGS expanded research into Massachusetts Bay with a multidisciplinary program in 1989.

Massachusetts

Distribution of foraminifera in Chincoteague Bay and the marshes of Assateague Island and the adjacent vicinity, Maryland and Virginia

Scientists from the U.S. Geological Survey (USGS), St. Petersburg Coastal and Marine Science Center conducted a seasonal collection of estuarine, marsh, and sandy washover surface sediments from Chincoteague Bay, Tom’s Cove, and the surrounding Assateague Island and Delmarva Peninsula in March–April and October 2014, after Hurricane Sandy. Micropaleontology samples were collected as part of a complementary USGS Coastal and Marine Geology Program Sea-level and Storm Impacts on Estuarine Environments and Shorelines project study. For comparison with estuarine and overwash deposited foraminifera, a group of scientists from the USGS Woods Hole Coastal and Marine Science Center in Massachusetts collected samples offshore of Assateague Island on the inner continental shelf during a seafloor mapping study in the summer of 2014 and shipped select samples to the St. Petersburg Coastal and Marine Science Center. The micropaleontological subsamples analyzed for foraminifera at each site can be used to establish a foraminiferal baseline assemblage that takes into consideration the seasonal variability of the various species, regarding density and geographic extent, which are influenced by transient and stable environmental parameters. By understanding what parameters affect the various foraminiferal assemblages, researchers can delineate how alterations in salinity, temperature, or marsh-to-bay interactions, such as marsh erosion, might affect that assemblage.

Maryland, Virginia

Prospects for reconstructing paleoenvironmental conditions from organic compounds in polar snow and ice

Polar ice cores provide information about past climate and environmental changes over periods ranging from a few years up to 800,000 years. The majority of chemical studies have focused on determining inorganic components, such as major ions and trace elements as well as on their isotopic fingerprint. In this paper, we review the different classes of organic compounds that might yield environmental information, discussing existing research and what is needed to improve knowledge. We also discuss the problems of sampling, analysis and interpretation of organic molecules in ice. This review highlights the great potential for organic compounds to be used as proxies for anthropogenic activities, past fire events from different types of biomass, terrestrial biogenic emissions and marine biological activity, along with the possibility of inferring past temperature fluctuations and even large-scale climate variability. In parallel, comprehensive research needs to be done to assess the atmospheric stability of these compounds, their ability to be transported long distances in the atmosphere, and their stability in the archive in order to better interpret their fluxes in ice cores. In addition, specific decontamination procedures, analytical methods with low detection limits (ng/L or lower), fast analysis time and low sample requests need to be developed in order to ensure a good time resolution in the archive.

Quaternary Science Reviews

Continental shelf GIS for the Monterey Bay National Marine Sanctuary

A marine sanctuary is an environment where the interests of science and society meet. Sanctuary managers need access to the best scientific data available that describe the environment and environmental processes in sanctuaries. Seafloor mapping and sampling in the Monterey Bay National Marine Sanctuary have revealed new details about the geology, morphology, and active geologic processes of this region. Data from sidescan sonar, multibeam sonar bathymetry, physical samples, and instrument moorings, are consolidated with new and existing maps in a geographic information system (GIS). The GIS provides researchers and policymakers a view of the relationship among data sets to assist science studies and to help with economic and social policy-making decisions regarding this protected environment.

California

Improving short-term recruitment forecasts for coho salmon using a spatiotemporal integrated population model

Fishery managers often rely on forecasts of future population abundance to set allowable harvest quotas or exploitation rates. While there has been substantial research devoted to identifying environmental factors that can predict recruitment for individual populations, such correlations often degrade over time, thereby limiting their utility for management. Conversely, examining multiple populations at once to detect shared, spatially structured patterns can offer insights into their recruitment dynamics that are advantageous for forecasting. Here, we develop a population dynamics model for natural origin coho salmon ( Oncorhynchus kisutch ) stocks in Washington State that leverages spatial and temporal autocorrelation in marine survival to improve one-year-ahead forecasts of adult returns. Executed in a Bayesian hierarchical integrated modelling framework, our spatiotemporal approach incorporates multiple data types and shares information among stocks to estimate key biological parameters that are informative for forecasting. Retrospective evaluation of one-year-ahead forecast skill indicated that the spatiotemporal integrated population model (ST-IPM) outperformed existing forecasts of Washington State coho salmon returns by 25–38 % on average. Moreover, the ST-IPM estimates parameters that were previously non-identifiable for many stocks, and propagates uncertainty from multiple contributing data sources into model forecasts. Our results add to a growing body of work demonstrating the utility of spatiotemporal and integrated approaches for modelling population dynamics, and the framework developed here has broad applications to the assessment and management of coho salmon in Washington State and elsewhere throughout their range.

Washington