SEARCH · Search USGS

Results for “Journal of Plant Research”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 73 records · Page 4Linked to original sources

USGS2026

Advances and applications of Unoccupied Aerial Systems (UAS) research in landscape ecology

Landscape ecologists have long depended on satellite and aerial remote sensing to address questions about landscape pattern and process, structure, and change (Foody 2023 ). Unoccupied aerial systems/vehicles (UAS/UAV, a.k.a. drones) technology is becoming an increasingly popular research tool in environmental sciences allowing scientists to generate low-cost, high-quality, and high-resolution imagery on demand that can be tailored to specific research questions. While satellite data are of a fixed resolution and temporal interval, UAS offer researchers control and flexibility to design studies and collect data at resolutions and scales that provide ecologically relevant information at finer spatial resolutions (e.g., < 30 cm) than what is currently available from satellite platforms (typically > 3m), thus helping capture objects such as individual plant canopies, micro-topography, and individual animals. Unlike satellites with fixed orbits, UAS can be deployed at more optimal temporal frequencies for ecological monitoring. We organized the special collection “Advances and Applications of Unoccupied Aerial Systems (UAS) Research in Landscape Ecology” to showcase the many ways that UAS tools and technologies are currently applied to advance landscape ecological research. When we announced the collection in 2023, only 11 papers published in the journal Landscape Ecology used UAS data, which was a notably small number compared to many other general ecology, environmental science and remote sensing journals. In an attempt to understand why UAS were not more widely used in landscape ecology and provide possible solutions, we published a review article (Villarreal et al. 2025) that identified the challenges, knowledge gaps, and obstacles for the adoption of UAS technologies in landscape ecology research. The main issues we identified include: (1) an abundance of UAS methods papers in the existing literature, with comparatively few studies demonstrating how UAS can be applied to address ecological questions; (2) a perceived scale mismatch between the geographic extent of UAS data collection (local) compared to larger study areas (landscapes) and a need to design robust scaling approaches to connect fine-scale UAS data with broader ecological patterns; and (3) a need for improved integration of UAS data with other commonly used remote sensing datasets including historical high resolution aerial imagery. Additionally, researchers new to UAS remote sensing may be discouraged or overwhelmed by the general lack of scientific consensus and standardized protocols for typical tasks such as data collection, vegetation classification, and change detection, as well as restrictive and/or confusing policy, regulatory, and legal issues surrounding UAS operations (Villarreal et al. 2025).

Landscape Ecology↗

USGS2016

Enhancing and restoring habitat for the desert tortoise

Habitat has changed unfavorably during the past 150 y for the desert tortoise Gopherus agassizii , a federally threatened species with declining populations in the Mojave Desert and western Sonoran Desert. To support recovery efforts, we synthesized published information on relationships of desert tortoises with three habitat features (cover sites, forage, and soil) and candidate management practices for improving these features for tortoises. In addition to their role in soil health and facilitating recruitment of annual forage plants, shrubs are used by desert tortoises for cover and as sites for burrows. Outplanting greenhouse-grown seedlings, protected from herbivory, has successfully restored (>50% survival) a variety of shrubs on disturbed desert soils. Additionally, salvaging and reapplying topsoil using effective techniques is among the more ecologically beneficial ways to initiate plant recovery after severe disturbance. Through differences in biochemical composition and digestibility, some plant species provide better-quality forage than others. Desert tortoises selectively forage on particular annual and herbaceous perennial species (e.g., legumes), and forage selection shifts during the year as different plants grow or mature. Nonnative grasses provide low-quality forage and contribute fuel to spreading wildfires, which damage or kill shrubs that tortoises use for cover. Maintaining a diverse “menu” of native annual forbs and decreasing nonnative grasses are priorities for restoring most desert tortoise habitats. Reducing herbivory by nonnative animals, carefully timing herbicide applications, and strategically augmenting annual forage plants via seeding show promise for improving tortoise forage quality. Roads, another disturbance, negatively affect habitat in numerous ways (e.g., compacting soil, altering hydrology). Techniques such as recontouring road berms to reestablish drainage patterns, vertical mulching (“planting” dead plant material), and creating barriers to prevent trespasses can assist natural recovery on decommissioned backcountry roads. Most habitat enhancement efforts to date have focused on only one factor at a time (e.g., providing fencing) and have not included proactive restoration activities (e.g., planting native species on disturbed soils). A research and management priority in recovering desert tortoise habitats is implementing an integrated set of restorative habitat enhancements (e.g., reducing nonnative plants, improving forage quality, augmenting native perennial plants, and ameliorating altered hydrology) and monitoring short- and long-term indicators of habitat condition and the responses of desert tortoises to habitat restoration.

Mojave Desert↗

USGS2016

Flammability as an ecological and evolutionary driver

We live on a flammable planet yet there is little consensus on the origin and evolution of flammability in our flora. We argue that part of the problem lies in the concept of flammability, which should not be viewed as a single quantitative trait or metric. Rather, we propose that flammability has three major dimensions that are not necessarily correlated: ignitability, heat release and fire spread rate. These major axes of variation are controlled by different plant traits and have differing ecological impacts during fire. At the individual plant scale, these traits define three flammability strategies observed in fire-prone ecosystems: the non-flammable, the fast-flammable and the hot-flammable strategy (with low ignitability, high flame spread rate and high heat release, respectively). These strategies increase the survival or reproduction under recurrent fires, and thus, plants in fire-prone ecosystems benefit from acquiring one of them; they represent different (alternative) ways to live under recurrent fires. Synthesis . This novel framework based on different flammability strategies helps us to understand variability in flammability across scales, and provides a basis for further research.

Journal of Ecology↗

USGS2019

Seed bank community and soil texture relationships in a cold desert

Sustainable dryland management depends on understanding environmental factors driving composition of current and future ecological communities. While there has been extensive research on aboveground plant communities, less is known about belowground soil seed bank communities, which can reflect both past and potential future communities. In the Colorado Plateau of the western United States, we explored aboveground and belowground plant communities and how they varied across sites with similar climate but contrasting soil textures. We found that aboveground vegetation and belowground seed bank community composition each varied significantly among sites. However, we also observed marked aboveground-belowground compositional dissimilarity across sites, suggesting that the two spatially-associated communities may respond differently to the same environmental gradient. Lastly, we found that cheatgrass seed prevalence (Bromus tectorum) – one of the region’s major exotic invasive plants – varied strongly by soil texture, a finding with potential implications for invasive species management. From our research findings, we highlight two general patterns for dryland managers. Firstly, we show aboveground and belowground plant communities will not always respond to the same environmental changes in a coordinated manner. Secondly, the data underscore a large potential role for soil texture in mediating the plant community responses to other environmental factors.

Utah↗

USGS2021

A common garden super-experiment: An impossible dream to inspire possible synthesis

Global change threatens plant diversity and disrupts its interrelationship with ecosystem structure and function. This disruption in turn undermines confidence in the knowledge ecologists produce, and whether it will translate into multidisciplinary research settings or guide the effective management of natural lands. To address this challenge, ecology needs to consider the interactions between different levels of biological hierarchy, especially how they feedback on, and are mediated by, plant diversity. Doing so will require conducting empirical work and developing theory that simultaneously considers multiple disciplinary perspectives and units of study. Here we advocate the use of common gardens to integrate ecology, evolutionary biology, and ecosystem science through an explicit focus on simultaneous measurement of response variables at multiple levels of biological organization. This approach will provide opportunities to evaluate assumptions important to prediction, such as space-for-time substitution, and tackle the integration of physicochemical and eco-evolutionary foundations to understanding plants and ecosystems. Synthesis: We summarize the large body of research on Sonoran Desert winter annuals to demonstrate how experimental designs that employ common gardens to integrate processes across scales hold special promise. This includes refining trait-based theories of plant strategies, providing insight into ecosystem responses to global change, and collaborating effectively with other scientific disciplines.

Journal of Ecology↗

USGS2015

Wildlife, urban inputs, and landscape configuration are responsible for degraded swimming water quality at an embayed beach

Jeorse Park Beach, on southern Lake Michigan, experiences frequent closures due to high Escherichia coli ( E. coli ) levels since regular monitoring was implemented in 2005. During the summer of 2010, contaminant source tracking techniques, such as the conventional microbial and physical surveys and hydrodynamic models, were used to determine the reasons for poor water quality at Jeorse Park. Fecal indicator bacteria ( E. coli , enterococci) were high throughout the season, with densities ranging from 12–2419 (culturable E. coli ) and 1–2550 and < 1–5831 (culturable and qPCR enterococci, respectively). Genetic markers for human ( Bacteroides HF183) and gull ( Catellicoccus marimammalium ) fecal contamination were found in 15% and 37% of the samples indicating multiple sources contributing to poor water quality. Nesting colonies of double-crested cormorants ( Phalacrocorax auritus ) have steadily increased since 2005, coinciding with high E. coli levels. A hydrodynamic model indicated that limited circulation allows bacteria entering the embayed area to be retained in nearshore areas; and bacterial resuspension from sand and stranded beach wrack during storm events compounds the problem. The integration of hydrodynamics, expanded use of chemical and biological markers, as well as more complex statistical multivariate techniques can improve microbial source tracking, informing management actions to improve recreational water quality. Alterations to embayed structures to improve circulation and reduce nuisance algae as well as growing native plants to retain sand to improve beach morphometry are among some of the restoration strategies under consideration in ongoing multi-agency collaborations.

Indiana↗

USGS2017

Novel observations of larval fire survival, feeding behavior, and host plant use in the regal fritillary, Speyeria idalia (Drury) (Nymphalidae)

Speyeria idalia is a prairie specialist that has experienced dramatic population declines throughout its range. Speyeria idalia is nearly extirpated from the eastern portion of its former range; however, populations within Kansas are relatively stable. We made several previously undescribed field observations of late-instar larvae and post-diapause female S. idalia in northeastern Kansas during 2014–2016. We report finding late-instar larvae at locations that were burned within weeks of detection. The observations of larvae shortly following a burn suggests that S . idalia larvae are capable of surviving fire and contradicts our current knowledge of this species. Additionally, we describe a feeding behavior characteristic of late-instar larvae. Larvae observed in the field and lab stripped leaves of host plants leaving only stems. This strip-style feeding behavior provided unique feeding evidence that was valuable to detecting the presence of larvae in the field. Finally, we documented larvae and post-diapause, egg depositing females using Viola sororia. The use of this relatively widespread and common plant by S. idalia populations in the Central Great Plains has only been implicitly documented but may have important conservation implications. These novel observations further our knowledge of the ecology of this imperiled species and provide timely information that may improve research and conservation management efforts directed toward S . idalia populations.

Journal of the Lepidopterists' Society↗

USGS2014

Potential environmental effects of pack stock on meadow ecosystems of the Sierra Nevada, USA

Pack and saddle stock, including, but not limited to domesticated horses, mules, and burros, are used to support commercial, private and administrative activities in the Sierra Nevada. The use of pack stock has become a contentious and litigious issue for land management agencies in the region inter alia due to concerns over effects on the environment. The potential environmental effects of pack stock on Sierra Nevada meadow ecosystems are reviewed and it is concluded that the use of pack stock has the potential to influence the following: (1) water nutrient dynamics, sedimentation, temperature, and microbial pathogen content; (2) soil chemistry, nutrient cycling, soil compaction and hydrology; (3) plant individuals, populations and community dynamics, non-native invasive species, and encroachment of woody species; and (4) wildlife individuals, populations and communities. It is considered from currently available information that management objectives of pack stock should include the following: minimise bare ground, maximise plant cover, maintain species composition of native plants, minimise trampling, especially on wet soils and stream banks, and minimise direct urination and defecation by pack stock into water. However, incomplete documentation of patterns of pack stock use and limited past research limits current understanding of the effects of pack stock, especially their effects on water, soils and wildlife. To improve management of pack stock in this region, research is needed on linking measurable monitoring variables (e.g. plant cover) with environmental relevancy (e.g. soil erosion processes, wildlife habitat use), and identifying specific environmental thresholds of degradation along gradients of pack stock use in Sierra Nevada meadows.

Rangeland Journal↗

USGS2009

Assessment of the UV camera sulfur dioxide retrieval for point source plumes

Digital cameras, sensitive to specific regions of the ultra-violet (UV) spectrum, have been employed for quantifying sulfur dioxide (SO 2 ) emissions in recent years. The instruments make use of the selective absorption of UV light by SO 2 molecules to determine pathlength concentration. Many monitoring advantages are gained by using this technique, but the accuracy and limitations have not been thoroughly investigated. The effect of some user-controlled parameters, including image exposure duration, the diameter of the lens aperture, the frequency of calibration cell imaging, and the use of the single or paired bandpass filters, have not yet been addressed. In order to clarify methodological consequences and quantify accuracy, laboratory and field experiments were conducted. Images were collected of calibration cells under varying observational conditions, and our conclusions provide guidance for enhanced image collection. Results indicate that the calibration cell response is reliably linear below 1500 ppm m, but that the response is significantly affected by changing light conditions. Exposure durations that produced maximum image digital numbers above 32 500 counts can reduce noise in plume images. Sulfur dioxide retrieval results from a coal-fired power plant plume were compared to direct sampling measurements and the results indicate that the accuracy of the UV camera retrieval method is within the range of current spectrometric methods. ?? 2009 Elsevier B.V.

Journal of Volcanology and Geothermal Research↗

USGS2018

Biocrusts: The living skin of the Earth

Biological soil crusts (biocrusts) form a “living skin” at the soil surface in many low productivity ecosystems around the world including water- and cold-limited environments, and early successional seres (Belnap et al. 2003). They may be composed of any configuration of soil surface-dwelling cyanobacteria, eukaryotic algae, lichens, mosses or liverworts, and support assemblages of decomposers and a faunal food web (Belnap et al. 2003). These soil surface communities have global relevance, as it has been recently estimated that they cover about 12% of the terrestrial surface currently (Rodriguez-Caballero et al. 2018). Biocrust communities are perhaps an ideal subject for the journal Plant and Soil, because they are simultaneously plant-like, due to their dominance by autotrophs, yet biocrusts are also clearly a physical feature of the soil given that component organisms are enmeshed in, adherent to, or otherwise in direct contact with the soil surface. The activity of the organisms is what engineers the well-aggregated thin layer at the soil surface that we recognize as a biocrust (Belnap et al. 2003). The contributions of biocrusts to ecosystem function has fueled much research interest, initially in the observation of biocrusts’ soil aggregating and erosion-resisting nature, and later as a multifunctional, globally-relevant ecosystem element instrumental in: 1. building or otherwise altering soil nutrient stocks through N-fixation (Elbert et al. 2012), dust trapping (Reynolds et al. 2001) and nutrient cycling (Strauss et al. 2012), 2. influencing hydrological properties of soil such as the water balance (Chamizo et al. 2016), and 3. The thermal energy balance of the ecosystem (Coradeau et al. 2016, Rutherford et al. 2017).

Plant and Soil↗

USGS2018

Regeneration of Salicaceae riparian forests in the Northern Hemisphere: A new framework and management tool

Human activities on floodplains have severely disrupted the regeneration of foundation riparian shrub and tree species of the Salicaceae family ( Populus and Salix spp.) throughout the Northern Hemisphere. Restoration ecologists initially tackled this problem from a terrestrial perspective that emphasized planting. More recently, floodplain restoration activities have embraced an aquatic perspective, inspired by the expanding practice of managing river flows to improve river health (environmental flows) . However, riparian Salicaceae species occupy floodplain and riparian areas, which lie at the interface of both terrestrial and aquatic ecosystems along watercourses . Thus, their regeneration depends on a complex interaction of hydrologic and geomorphic processes that have shaped key life-cycle requirements for seedling establishment . Ultimately, restoration needs to integrate these concepts to succeed. However, while regeneration of Salicaceae is now reasonably well-understood, the literature reporting restoration actions on Salicaceae regeneration is sparse, and a specific theoretical framework is still missing. Here, we have reviewed 105 peer-reviewed published experiences in restoration of Salicaceae forests, including 91 projects in 10 world regions, to construct a decision tree to inform restoration planning through explicit links between the well-studied biophysical requirements of Salicaceae regeneration and 17 specific restoration actions, the most popular being planting (in 55% of the projects), land contouring (30%), removal of competing vegetation (30%), site selection (26%), and irrigation (24%). We also identified research gaps related to Salicaceae forest restoration and discuss alternative, innovative and feasible approaches that incorporate the human component.

Journal of Environmental Management↗

USGS2022

Effects of shading on the rare plant species, Physostegia correllii (Lamiaceae) and Trillium texanum (Melanthiaceae)

Rare plant species that are constrained by shading may be threatened by a lack of natural disturbance that removes overhanging vegetation. The original distribution of the study species Physostegia correllii (Lundell) Shinners included freshwater floodplains of large rivers in the southcentral U.S. (Colorado, Rio Grande, and Mississippi rivers). A second species, Trillium texanum Buckley was found in seep spring baygalls in east-central Texas and extreme northwestern Louisiana. Experiments to determine the effects of shading on P. correllii and T. texanum were conducted using short-term shade cloth treatments (full sunlight vs. 30% shading for 2–3 weeks), and a dryness treatment for T. texanum (moist vs. less moist). Mean height and cover responses of individuals for both species were determined in conservation gardens located in Lafayette, Louisiana. Physostegia correllii grown in shaded environments for 2.5 weeks had shorter mean height than if grown in full sunlight. Half of the shaded plants in shaded plots had died by the mid-summer. For T. texanum, shading reduced the mean height and cover of plants. Therefore, management to remove overhanging ground vegetation to mimic natural disturbance might revive P. correlli i and/or T. texanum populations where overhanging vegetation is increasing due to lack of natural disturbance (e.g., flood pulsing, grazing, burning).

Louisiana, Texas↗

USGS2022

Combining eddy covariance and chamber methods to better constrain CO2 and CH4 fluxes across a heterogeneous restored tidal wetland

Tidal wetlands play an important role in global carbon cycling by storing carbon in sediment at millennial time scales, transporting dissolved carbon into coastal waters, and contributing significantly to global CH 4 budgets. However, these ecosystems' greenhouse gas monitoring and predictions are challenging due to spatial heterogeneity and tidal flooding. We utilized eddy covariance and chamber measurements to quantify fluxes of CO 2 and CH 4 at a restored tidal saltmarsh across spatial and temporal scales. Eddy covariance data revealed that the site was a strong net sink for CO 2 (−387 g C-CO 2 m −2 yr −1 , SD = 46) and a small net source of CH 4 (0.7 g C-CH 4 m −2 yr −1 , SD = 0.4). After partitioning net ecosystem exchange of CO 2 into gross primary production and ecosystem respiration, we found that high net uptake of CO 2 was due to low respiration emissions rather than high photosynthetic rates. We also found that respiration rates varied between land covers with increased respiration in mudflats compared to vegetated areas. Daytime soil chamber measurements revealed that the greatest CO 2 emission was from higher elevation mudflat soils (0.5 μmol m −2 s −1 , SE = 1.3) and CH 4 emission was greatest from lower elevation Spartina foliosa soils (1.6 nmol m −2 s −1 , SD = 8.2). Overall, these results highlight the importance of the relationships between wetland plant community and elevation, and inundation for CO 2 and CH 4 fluxes. Future research should include the use of high-resolution imagery, automated chambers, and a focus on quantifying carbon exported in tidal waters.

California↗

USGS2008

Late-Holocene fossil rodent middens from the Arica region of northernmost Chile

Identification of >40 taxa of plant macrofossils in 14 rodent (Abrocoma) middens collected from 2800 to 3590 m elevation at the latitude of Arica, Chile (18°S) provide snapshots of vegetation in the northernmost Atacama Desert over the past 3000 years. Midden floras show considerable stability throughout the late Holocene, which may be due in part to the broad elevational ranges of many perennial species and midden insensitivity to changes in plant community structure. The greatest variability is found in annuals in the Prepuna, a climatically sensitive zone. This variability, however might also arise from the brevity of midden depositional episodes. As the first midden record from the Arica-Parinacota Region (Chile's northernmost administrative region), this study demonstrates the potential for future midden research in this area.

Arica-Parinacota Region↗

USGS2020

Forward-looking dryland restoration in an age of change

Drought, wildfires, and invasive species are among the many challenges practitioners face in achieving restoration goals in drylands. In this article, we highlight relevant restoration research and programs that pursue actionable information and resource management goals for the Intermountain West. In the context of international restoration targets recently set, we speak to dryland restoration challenges and opportunities related to climate change, social perceptions of drylands, and species selection strategies aimed at restoring healthy native plant communities.

Native Plants Journal↗

USGS2001

Coastal change analysis program implemented in Louisiana

Landsat Thematic Mapper images from 1990 to 1996 and collateral data sources were used to classify the land cover of the Mermentau River Basin (MRB) within the Chenier Plain of coastal Louisiana. Landcover classes followed the definition of the National Oceanic and Atmospheric Administration's Coastal Change Analysis Program; however, classification methods had to be developed as part of this study for attainment of these national classification standards. Classification method developments were especially important when classes were spectrally inseparable, when classes were part of spatial and spectral continuums, when the spatial resolution of the sensor included more than one landcover type, and when human activities caused abnormal transitions in the landscape. Most classification problems were overcome by using one or a combination of techniques, such as separating the MRB into subregions of commonality, applying masks to specific land mixtures, and highlighting class transitions between years that were highly unlikely. Overall, 1990, 1993, and 1996 classification accuracy percentages (associated kappa statistics) were 80% (0.79), 78% (0.76), and 86% (0.84), respectively. Most classification errors were associated with confusion between managed (cultivated land) and unmanaged grassland classes; scrub shrub, grasslands and forest classes; water, unconsolidated shore and bare land classes; and especially in 1993, between water and floating vegetation classes. Combining cultivated land and grassland classes and water and floating vegetation classes into single classes accuracies for 1990, 1993, and 1996 increased to 82%, 83%, and 90%, respectively. To improve the interpretation of landcover change, three indicators of landcover class stability were formulated. Location stability was defined as the percentage of a landcover class that remained as the same class in the same location at the beginning and the end of the monitoring period. Residence stability was defined as the percent change in each class within the entire MRB during the monitoring period. Turnover was defined as the addition of other landcover classes to the target landcover class during the defined monitoring period. These indicators allowed quick assessment of the dynamic nature of landcover classes, both in reference to a spatial location and to retaining their presence throughout the MRB. Examining the landcover changes between 1990 to 1993 and 1993 to 1996, led us to five principal findings: (1) Landcover turnover is maintaining a near stable logging cycle, although the locations of grassland, scrub shrub, and forest areas involved in the cycle appeared to change. (2) Planting of seedlings is critical to maintaining cycle stability. (3) Logging activities tend to replace woody land mixed forests with woody land evergreen forests. (4) Wetland estuarine marshes are expanding slightly. (5) Wetland palustrine marshes and mature forested wetlands in the MRB are relatively stable.

Louisiana↗

USGS2019

Responses of Native American cultural heritage to changes in environmental setting

Cultural expressions of American Indian and Alaska Natives (AIAN) reflect the relationship between AIAN and the plant and animal species present in an area. Different forces that modify that relationship and influence those expressions can potentially shape AIAN cultural heritage and even compromise their cultural identity. Herein, we propose seven modalities to illustrate how AIAN cultural expressions may respond to changes in environmental settings that alter the relationship between plant and animal assemblages, and Native peoples. Each modality provides insight into the vulnerability, resilience, and adaptive capacity of AIAN cultural expressions to changes in environmental settings. Future research may delve deeper into these modalities and help identify appropriate methods for managing culturally important resources. More culturally sensitive management approaches may strengthen conservation practices and safeguard the cultural legacy of indigenous groups.

AlterNative: An International Journal of Indigenou↗

USGS2008

Late-Holocene fossil rodent middens from the Arica region of northernmost Chile

Identification of >40 taxa of plant macrofossils in 14 rodent (Abrocoma) middens collected from 2800 to 3590 m elevation at the latitude of Arica, Chile (18??S) provide snapshots of vegetation in the northernmost Atacama Desert over the past 3000 years. Midden floras show considerable stability throughout the late Holocene, which may be due in part to the broad elevational ranges of many perennial species and midden insensitivity to changes in plant community structure. The greatest variability is found in annuals in the Prepuna, a climatically sensitive zone. This variability, however might also arise from the brevity of midden depositional episodes. As the first midden record from the Arica-Parinacota Region (Chile's northernmost administrative region), this study demonstrates the potential for future midden research in this area. ?? 2007 Elsevier Ltd. All rights reserved.

Journal of Arid Environments↗