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Tracking environmental dynamics and agricultural intensification in southern Mali

The Office de la Haute Vallée du Fleuve Niger (OHVN) zone in southern Mali is a small but important agricultural production region. Against a background of environmental degradation including decades of declining rainfall, soil erosion, and human pressure on forest resources, numerous farming communities stand out through the use of improved soil and water management practices that have improved agricultural and environmental conditions. Field surveys conducted in 1998–2001 indicated that environmental and agricultural conditions have improved in the past decade. In an effort to better quantify environmental trends, we conducted a study using medium- and high-resolution remotely sensed images from 1965 to 2001 in order to analyze land use and land cover trends in 21 village territories. The trends show clear indications of agricultural intensification and diversification among villages that have received assistance from the OHVN agricultural development agency. Some communities have improved environmental conditions by protecting their forest resources through community management actions. Four decades of remotely sensed images played a practical role in tracking and quantifying environmental and agricultural conditions over time.

Agricultural Systems

What is a picture worth? A history of remote sensing

Remote sensing is the use of electromagnetic energy to measure the physical properties of distant objects. It includes photography and geophysical surveying as well as newer techniques that use other parts of the electromagnetic spectrum. The history of remote sensing begins with photography. The origin of other types of remote sensing can be traced to World War II, with the development of radar, sonar, and thermal infrared detection systems. Since the 1960s, sensors have been designed to operate in virtually all of the electromagnetic spectrum. Today a wide variety of remote sensing instruments are available for use in hydrological studies; satellite data, such as Skylab photographs and Landsat images are particularly suitable for regional problems and studies. Planned future satellites will provide a ground resolution of 10–80 m. Remote sensing is currently used for hydrological applications in most countries of the world. The range of applications includes groundwater exploration determination of physical water quality, snowfield mapping, flood-inundation delineation, and making inventories of irrigated land. The use of remote sensing commonly results in considerable hydrological information at minimal cost. This information can be used to speed-up the development of water resources, to improve management practices, and to monitor environmental problems.

Hydrological Sciences Bulletin

Discrete and continuous water-quality data and hydrologic parameters from seven agricultural watersheds in the United States, 2002-09

Field and analytical methods; discrete organic and non-organic water-quality data and associated quality-control data; and continuous hydrologic and water-quality parameters are reported for sites in California, Indiana, Iowa, Maryland, Mississippi, Nebraska, and Washington. The sites were sampled as part of the U.S. Geological Survey National Water-Quality Assessment Program?s Agricultural Chemicals Team study to better understand how environmental processes and agricultural practices interact to determine the transport and fate of agricultural chemicals in the environment.

Data Series

Dust control products at Hagerman National Wildlife Refuge, Texas: environmental safety and performance

Controlling fugitive dust while protecting natural resources is a challenge faced by all managers of unpaved roads. Unfortunately, road managers choosing between dust control products often have little objective environmental information to aid their decisions. To address this information gap, the U.S. Geological Survey and the U.S. Fish and Wildlife Service collaborated on a field test of three dust control products with the objectives of ( a ) evaluating product performance under real-world conditions, ( b ) verifying the environmental safety of products identified as practically nontoxic in laboratory tests, and ( c ) testing the feasibility of several environmental monitoring techniques for use in dust control tests. In cooperation with refuge staff and product vendors, three products (one magnesium chloride plus binder, one cellulose, and one synthetic fluid plus binder) were applied in July 2012 to replicated road sections at the Hagerman National Wildlife Refuge in Texas. These sections were monitored periodically for 12 months after application. Product performance was assessed by mobile-mounted particulate-matter meters measuring production of fugitive dust and by observations of road conditions. Environmental safety was evaluated through on-site biological observations and leaching tests with samples of treated aggregate. All products reduced dust and improved surface condition during those 12 months. Planned environmental measurements were not always compatible with day-to-day refuge management actions; this incompatibility highlighted the need for flexible biological monitoring plans. As one of the first field tests of dust suppressants that explicitly incorporated biological endpoints, this effort provides valuable information for improving field tests and for developing laboratory or semifield alternatives.

Texas

Learning from real-world experience to understand renewable energy impacts to wildlife

The project team sought to use real-world data to understand adverse effects to wildlife of renewable energy production that is critical to meeting California’s climate and clean energy goals. The project had three main components. First, a systematic literature review studied 20 peer-reviewed publications and 612 reports from other nonreviewed sources from 231 wind and solar facilities in North America. Within California, 50 percent of facilities collected pre- and post-construction data, 30 percent had experimental study designs, and fewer than 7 percent estimated detection probability during habitat use surveys. Mitigation at wind power plants focused on repowering to reduce risk to soaring birds and at solar facilities emphasized wildlife deterrence and compensatory mitigation. Second, the authors developed a best-practices approach to employ environmental isotopes (for example, hydrogen obtained from animal tissue) and rescaling functions (a statistical approach to modeling the relationship between variables) to assign individual birds or bats to their place of origin. The team applied this approach to feathers from 411 individuals of 12 species killed at wind facilities and 515 individuals of 19 species killed at solar facilities. From 24 percent to 100 percent (mean +/- SD = 49 percent +/- 33 percent) and 25 percent to 100 percent (73 percent +/- 25 percent) of birds grew feathers at a location outside the collection site at wind and solar facilities, respectively. Third, the authors constructed Bayesian integrated population models (probability models) for 29 focal species affected by wind or solar energy generation in California. Species predominantly local in origin generally had lower population growth rates than did species that were predominantly nonlocal in origin. These patterns illustrate the complex linkages between behavioral ecology, vulnerability to mortality, and population-level impacts to wildlife from fatalities at renewable energy facilities. This project benefits the renewable energy sector by providing a framework and specific tools for understanding environmental impacts of renewable energy generation.

California

Perspectives on challenges and opportunities at the restoration-policy interface in the U.S.A.

As we advance into the United Nations Decade on Ecosystem Restoration, understanding the relationship between science, management, and policy is increasingly important given the paucity of research evaluating the ability of existing policy to address contemporary environmental challenges. Despite their inherent interdependence, restoration ecology as a scientific discipline, ecological restoration as a practice, and the policies driving restoration efforts do not always represent a unified force. Accenting the policies and practices within the United States, we present our perspective on challenges associated with this disunion, including those linked to social dimensions of restoration and limitations associated with existing policy. We provide a review of existing federal policy in the United States and synthesize suggestions that have emerged in the literature to fortify connections between restoration science and policy. We also describe social challenges to meeting restoration goals, including barriers surrounding power dynamics, trust, and communication, as well as divergent incentives, perspectives, and values. We propose potential solutions that exist in transdisciplinary collaboration and knowledge sharing, and evidence-based, balanced decision-making that equally considers varying perspectives. With the understanding that current conservation practices are not enough to mitigate environmental degradation, we focus on streamlining problem-solving strategies to support restoration and face the widespread ecological issues of today.

Restoration Ecology

Use of set blanks in reporting pesticide results at the U.S. Geological Survey National Water Quality Laboratory, 2001-15

Executive Summary Background .—Pesticide results from the U.S. Geological Survey (USGS) National Water Quality Laboratory (NWQL) are used for water-quality assessments by many agencies and organizations. The USGS is committed to providing data of the highest possible quality to the consumers of its data. A cooperator’s inquiries about specific pesticide detections in water revealed potential laboratory contamination issues for some results. Consequently, the USGS conducted an extensive evaluation of potential low-level contamination related to processing or analysis of water-quality samples at NWQL for 21 pesticide compounds of interest to the cooperator. This is the most comprehensive study of NWQL pesticide quality-control (QC) results to date. Purpose and scope .—The purpose of this study was to document protocols used by the NWQL to censor pesticide results and to determine the effects of laboratory contamination—as determined from detections in laboratory set blanks—on pesticide detections in groundwater and surface-water samples. More than 30,000 pesticide results from 113 selected batches of samples (2 percent or less of total batches) analyzed by the NWQL during the 15 years from 2001 to 2015 were reviewed. All laboratory results from the selected batches, including results from environmental (surface water and groundwater) and QC (set-blank, blind-blank, and blind-spike) samples, were evaluated. The study includes results for 21 pesticide compounds analyzed in groundwater and surface-water samples collected across the United States. Eleven pesticide compounds were analyzed by a gas chromatography/mass spectrometry method and 10 compounds by a liquid chromatography/mass spectrometry method. Objectives and methods .—The objectives of this study were to (1) determine the characteristics of laboratory contamination over time, (2) compare distributions of pesticide results in set blanks with distributions in environmental samples, (3) evaluate the potential for false-positive and false-negative reporting of results, and (4) evaluate the effects of reevaluating historical pesticide results using 2017 compound identification protocols on detections of pesticides in groundwater and surface-water samples. The 113 instrument batches selected for this study contained detections of one or more of the 21 pesticide compounds in set blanks or were among those batches with the highest pesticide detection frequencies in set blanks. As a result, the dataset for this study was targeted toward pesticides and batches with laboratory contamination. The objectives were addressed by statistically comparing environmental and set-blank results; computing moving averages of set-blank detection frequencies to identify periods of episodic contamination; and using summary statistics, tabular summaries, and graphical approaches, such as time-series plots and cumulative distribution functions. Results .— Objective 1 : Laboratory contamination, as determined by pesticide detections in set blanks, was found in 13 percent of set-blank results from the 113 targeted batches included in this study (as compared to 6 percent of set-blank results from all 7,620 batches analyzed during the study period). It is estimated that 92 percent of the laboratory contamination during the study period was episodic, meaning that it occurred during discrete periods of time. All 21 of the targeted pesticide compounds had periods of episodic contamination, with most episodes ranging in duration from about 1 to 8 months. The remaining 8 percent of laboratory contamination was random or from a known source (deterministic). Objective 2 : For some compounds, graphs of cumulative distribution functions of the entire distributions of set-blank and environmental samples overlap, suggesting that there is no difference in the distributions of the two types of samples. However, time-series graphs show that detections in set blanks often occur at different times (sometimes separated by years) than detections in environmental samples, indicating clear differences in those distributions, and indicating the importance of evaluating the timing of detections in all sample types. For most compounds detected in set-blank and environmental samples, detection frequencies were significantly greater in set blanks than in groundwater or surface-water samples ( p <0.05). There are several explanations for this finding, including that the 113 batches of samples chosen for this study targeted batches with detections in set blanks or that detections in set-blank samples were historically determined with less stringent identification criteria than for environmental samples (groundwater and surface-water samples). Objective 3 : The false-positive and false-negative rates from blind samples submitted during the study period by the USGS Quality Systems Branch generally were less than 1 and 5 percent, respectively, for the 21 pesticides. The only compound with a false-positive rate greater than 1 percent was flumetsulam (2.6 percent), indicating that there is a higher likelihood of flumetsulam being reported as a detection when it is not present in an environmental sample compared with the reporting of other compounds. Objective 4 : Altogether, for data in targeted batches, NWQL would have reported 0.1 percent of results from groundwater samples and 1.4 percent of results from surface-water samples differently if 2017 identification protocols were applied to historical pesticide results. In most of these cases, detections observed in historical results would change to nondetections. The small percentages of changes that would occur if historical data were reevaluated indicate that historical protocols used by the NWQL to identify detections in environmental samples were robust and produced results that are predominantly consistent with current [2017] practices. Conclusions .—The NWQL produces high-quality pesticide results at environmentally relevant concentrations. NWQL identification protocols and censoring practices are largely effective at minimizing the reporting of false-positive and false-negative results. Laboratory contamination, when it occurred, tended to occur in episodes; thus, evaluating the timing and magnitude of detections in set blanks relative to detections in environmental samples was determined to be an important consideration for analysis of environmental results. Because NWQL censoring practices do not address all types and occurrences of laboratory contamination, options for additional censoring practices are provided for data users with more specific or stringent data-quality objectives. The methods used to analyze the 21 compounds for this report can similarly be applied to all 173 pesticide compounds that were analyzed by the NWQL during the same time period. This study also has helped to identify potential improvements in reporting USGS data, such as conducting more frequent review of set-blank datasets.

Scientific Investigations Report

Bridging theory and practice to inform seed selection for restoration

Introduction Land managers often face the critical decision of what plant materials to select for ecological restoration. Selection depends on factors that span ecological conditions and human interventions in the restoration process, which can strongly influence the recovery of a degraded ecosystem. Objectives To improve the seed selection process, we compared scientific literature and guidance from five federal agencies to bridge seed selection “theory” and “practice” in the interior western and central United States. Methods We extracted recurring themes and keywords associated with abiotic, biotic, land management, and producer practices that influence seed selection and analyzed their proportional use between agency guidance and scientific literature. Results We identified significant overlap between key concepts in guidance and literature, highlighting the interconnectedness between science and management. However, nuanced patterns emerged across seed selection themes, including more focus in the literature on local adaptation and genetic structure, ramifications of introducing gene flow and artificial selection during plant production, and provenancing strategies to address changing climatic conditions. In contrast, agency guidance focused on genetically appropriate and environmentally suitable seed selection and practical concerns, including seed cost, availability, and diversity. Seed selection studies in the literature were concentrated in the Great Basin and Colorado Plateau, scattered in the Great Plains, and were largely experimental. Conclusions Our review suggests new opportunities for co-production of science and decision-making frameworks among researchers, land managers, and seed producers to inform seed selection guidance for restoration.

Restoration Ecology

A causal examination of the effects of confounding factors on multimetric indices

The development of multimetric indices (MMIs) as a means of providing integrative measures of ecosystem condition is becoming widespread. An increasingly recognized problem for the interpretability of MMIs is controlling for the potentially confounding influences of environmental covariates. Most common approaches to handling covariates are based on simple notions of statistical control, leaving the causal implications of covariates and their adjustment unstated. In this paper, we use graphical models to examine some of the potential impacts of environmental covariates on the observed signals between human disturbance and potential response metrics. Using simulations based on various causal networks, we show how environmental covariates can both obscure and exaggerate the effects of human disturbance on individual metrics. We then examine from a causal interpretation standpoint the common practice of adjusting ecological metrics for environmental influences using only the set of sites deemed to be in reference condition. We present and examine the performance of an alternative approach to metric adjustment that uses the whole set of sites and models both environmental and human disturbance effects simultaneously. The findings from our analyses indicate that failing to model and adjust metrics can result in a systematic bias towards those metrics in which environmental covariates function to artificially strengthen the metric–disturbance relationship resulting in MMIs that do not accurately measure impacts of human disturbance. We also find that a “whole-set modeling approach” requires fewer assumptions and is more efficient with the given information than the more commonly applied “reference-set” approach.

Ecological Indicators

In situ soil moisture sensors in undisturbed soils

Soil moisture directly affects operational hydrology, food security, ecosystem services, and the climate system. However, the adoption of soil moisture data has been slow due to inconsistent data collection, poor standardization, and typically short record duration. Soil moisture, or quantitatively volumetric soil water content (SWC), is measured using buried, in situ sensors that infer SWC from an electromagnetic response. This signal can vary considerably with local site conditions such as clay content and mineralogy, soil salinity or bulk electrical conductivity, and soil temperature; each of these can have varying impacts depending on the sensor technology., Furthermore, poor soil contact and sensor degradation can affect the quality of these readings over time. Unlike more traditional environmental sensors, there are no accepted standards, maintenance practices, or quality controls for SWC data. As such, SWC is a challenging measurement for many environmental monitoring networks to implement. Here, we attempt to establish a community-based standard of practice for in situ SWC sensors so that future research and applications have consistent guidance on site selection, sensor installation, data interpretation, and long-term maintenance of monitoring stations., The videography focuses on a multi-agency consensus of best-practices and recommendations for the installation of in situ SWC sensors. This paper presents an overview of this protocol along with the various steps essential for high-quality and long-term SWC data collection. This protocol will be of use to scientists and engineers hoping to deploy a single station or an entire network.

Journal of Visualized Experiments

Relating nutrient and herbicide fate with landscape features and characteristics of 15 subwatersheds in the Choptank River watershed

Excess nutrients and agrochemicals from non-point sources contribute to water quality impairment in the Chesapeake Bay watershed and their loading rates are related to land use, agricultural practices, hydrology, and pollutant fate and transport processes. In this study, monthly baseflow stream samples from 15 agricultural subwatersheds of the Choptank River in Maryland USA (2005 to 2007) were characterized for nutrients, herbicides, and herbicide transformation products. High-resolution digital maps of land use and forested wetlands were derived from remote sensing imagery. Examination of landscape metrics and water quality data, partitioned according to hydrogeomorphic class, provided insight into the fate, delivery, and transport mechanisms associated with agricultural pollutants. Mean Nitrate-N concentrations (4.9 mg/L) were correlated positively with percent agriculture (R 2 = 0.56) and negatively with percent forest (R 2 = 0.60). Concentrations were greater ( p = 0.0001) in the well-drained upland (WDU) hydrogeomorphic region than in poorly drained upland (PDU), reflecting increased denitrification and reduced agricultural land use intensity in the PDU landscape due to the prevalence of hydric soils. Atrazine and metolachlor concentrations (mean 0.29 &mu;g/L and 0.19 &mu;g/L) were also greater ( p = 0.0001) in WDU subwatersheds than in PDU subwatersheds. Springtime herbicide concentrations exhibited a strong, positive correlation (R 2 = 0.90) with percent forest in the WDU subwatersheds but not in the PDU subwatersheds. In addition, forested riparian stream buffers in the WDU were more prevalent than in the PDU where forested patches are typically not located near streams, suggesting an alternative delivery mechanism whereby volatilized herbicides are captured by the riparian forest canopy and subsequently washed off during rainfall. Orthophosphate, CIAT (6-chloro- N -(1-methylethyl)-1,3,5-triazine-2,4-diamine), CEAT (6-chloro- N -ethyl-1,3,5-triazine-2,4-diamine), and MESA (2-[(2-ethyl-6-methylphenyl) (2-methoxy-1-methylethyl)amino]-2-oxoethanesulfonic acid) were also analyzed. These findings will assist efforts in targeting implementation of conservation practices to the most environmentally-critical areas within watersheds to achieve water quality improvements in a cost-effective manner.

Delaware, Maryland

Controls of vegetation structure and net primary production in restored grasslands

1. Vegetation structure and net primary production (NPP) are fundamental properties of ecosystems. Understanding how restoration practices following disturbance interact with environmental factors to control these properties can provide insight on how ecosystems recover and guide management efforts. 2. We assessed the relative contribution of environmental and restoration factors in controlling vegetation structure, above- and below-ground investment in production across a chronosequence of semiarid Conservation Reserve Program (CRP) fields recovering from dryland wheat cropping relative to undisturbed grassland. Importantly, we determined the role of plant diversity and how seeding either native or introduced perennial grasses influenced the recovery of vegetation properties. 3. Plant basal cover increased with field age and was highest in CRP fields seeded with native perennial grasses. In contrast, fields seeded with introduced perennial grasses had tall-growing plants with relatively low basal cover. These vegetation structural characteristics interacted with precipitation, but not soil characteristics, to influence above-ground NPP (ANPP). Fields enrolled in the CRP program for >7 years supported twice as much ANPP as undisturbed shortgrass steppe in the first wet year of the study, but all CRP fields converged on a common low amount of ANPP in the following dry year and invested less than half as much as the shortgrass steppe in below-ground biomass. 4. ANPP in CRP fields seeded with native perennial grasses for more than 7 years was positively related to species richness, whereas ANPP in CRP fields seeded with introduced perennial grasses were controlled more by dominant species. 5. Synthesis and applications. Seeding with introduced, instead of native, perennial grasses had a strong direct influence on vegetation structure, including species richness, which indirectly affected NPP through time. However, the effects of restoring either native or introduced grasses on NPP were secondary to low water availability. Therefore, restoration strategies that maximize basal cover and below-ground biomass, which promote water acquisition, may lead to high resilience in semiarid and arid regions.

Colorado

Standards for documenting and monitoring bird reintroduction projects

It would be much easier to assess the effectiveness of different reintroduction methods, and so improve the success of reintroductions, if there was greater standardization in documentation of the methods and outcomes. We suggest a series of standards for documenting and monitoring the methods and outcomes associated with reintroduction projects for birds. Key suggestions are: documenting the planned release before it occurs, specifying the information required on each release, postrelease monitoring occurring at standard intervals of 1 and 5 years (and 10 for long-lived species), carrying out a population estimate unless impractical, distinguishing restocked and existing individuals when supplementing populations, and documenting the results. We suggest these principles would apply, largely unchanged, to other vertebrate classes. Similar methods could be adopted for invertebrates and plants with appropriate modification. We suggest that organizations publicly state whether they will adopt these approaches when undertaking reintroductions. Similar standardization would be beneficial for a wide range of topics in environmental monitoring, ecological studies, and practical conservation.

Conservation Letters

Far from superficial: microbial diversity associated with the skin and mucus of fish

During horizontal or water-borne infection involving an obligate pathogen (e.g. – Aeromonas salmonicida, cause of furunculosis), the pathogen interacted with and influenced the microbial diversity of the dermal mucus of fish. Prior to infection, the prevalent bacterial flora cultured from juvenile Atlantic salmon (Salmo salar) included Pseudomonas fluorescens, Comomonas terrigenia, Acinetobacter sp., Moraxella sp., Pseudomonas dimunita, Alcaligenes denitrificans, Pseudomonas pseudoalcaligenes, and Pseudomonas alcaligenes, Serratia liquefaciens, Aeromonas hydrophila, other motile Aeromonas spp., and Corynebacterium aquaticum. After A. salmonicida was initially detected in this population as an external mucus infection, Acinetobacter sp., Moraxella sp., C. terrigenia, P. fluorescens, and P. dimunita, Staphylococcus sp., and A. hydrophila, were also present in appreciable numbers. Within several weeks, however, the A. salmonicida infection amplified and composed 78% of the total flora in the mucus. Only P. dimunita (4%). P. fluorescens (2%), and C. terrigenia (1%) were cultured at that time and more than a third of these fish showed evidence of a systemic A. salmonicida infection within their kidneys. Eight weeks after oral oxytetracycline treatments, A. salmonicida was no longer isolated from the mucus or kidneys of any fish and glucose inert or other oxidative microbes (e.g., P. fluorescens, C. terrigenia, Acinetobacter sp., Moraxella sp.) were beginning to repopulate the external surface of the salmon in increasing frequency. Still present and composing fairly large percentages of the total flora were A. hydrophila, as well as Enterobacter sp., and P. putrefaciens. A normal microbial diversity was re-established as the fish recovered. In another investigation, reduced biological diversity was noted in the dermal mucus among smallmouth bass that were sampled from the Jackson River (Covington, VA). In these fish, A. hydrophila and P. putrefaciens were the two predominant microorganisms composing 49.5% and 31.2% of the total bacterial flora, despite the absence of systemic infection or any other clinical signs of disease. In another instance, P. fluorescens was the sole bacterium associated with the surface of Atlantic salmon eggs regardless of their viability at the eyed stage of development. Collectively, these results indicate that the kinetics and distributions of the surface bacterial flora on aquatic organisms is affected by numerous factors including pathogen invasion, environmental conditions, and fish culture practices.

Conference Paper

Bayesian approaches to proxy uncertainty quantification in paleoecology: A mathematical justification and practical integration

Paleoenvironmental data are essential for reconstructing environmental conditions in the distant past, and these reconstructions strongly depend on proxies and age–depth models. Proxies are indirect measurements that substitute for variables that cannot be directly measured, such as past precipitation. Conversely, an age–depth model is a tool that correlates the observed proxy with a specific moment in time. Bayesian age–depth modelling has proved to be a powerful method for estimating sediment ages and their associated uncertainties. However, there remains considerable potential for further integration into proxy analysis. In this paper, we explore a mathematical justification and a computational approach that integrates uncertainty at the age–depth level and propagates it to the proxy scale in the form of a posterior predictive distribution. This method mitigates potential biases and errors by removing the need to assign a single age to a given proxy measurement. It allows for quantifying the likelihood that proxy data values correspond to modelled ages, thus enabling the quantification of uncertainty in both the temporal and proxy value domains. The use of Bayesian statistics in proxy analysis represents a relatively recent advancement. We aim to mathematically justify incorporating the Markov chain Monte Carlo output from age–depth models into proxy analysis and to present a novel methodology for constructing environmental reconstructions using this approach.

Journal of Agricultural, Biological and Environmen

A watershed-scale approach to tracing metal contamination in the environment

Introduction Public policy during the 1800's encouraged mining in the western United States. Mining on Federal lands played an important role in the growing economy creating national wealth from our abundant and diverse mineral resource base. The common industrial practice from the early days of mining through about 1970 in the U.S. was for mine operators to dispose of the mine wastes and mill tailings in the nearest stream reach or lake. As a result of this contamination, many stream reaches below old mines, mills, and mining districts and some major rivers and lakes no longer support aquatic life. Riparian habitats within these affected watersheds have also been impacted. Often, the water from these affected stream reaches is generally not suitable for drinking, creating a public health hazard. The recent Department of Interior Abandoned Mine Lands ( AML ) Initiative is an effort on the part of the Federal Government to address the adverse environmental impact of these past mining practices on Federal lands. The AML Initiative has adopted a watershed approach to determine those sites that contribute the majority of the contaminants in the watershed. By remediating the largest sources of contamination within the watershed, the impact of metal contamination in the environment within the watershed as a whole is reduced rather than focusing largely on those sites for which principal responsible parties can be found. The scope of the problem of metal contamination in the environment from past mining practices in the coterminous U.S. is addressed in a recent report by Ferderer (1996). Using the USGS 1:2,000,000-scale hydrologic drainage basin boundaries and the USGS Minerals Availability System ( MAS ) data base, he plotted the distribution of 48,000 past-producing metal mines on maps showing the boundaries of lands administered by the various Federal Land Management Agencies ( FLMA ). Census analysis of these data provided an initial screening tool for prioritization of watersheds in the western U.S. A different approach to the scope of the abandoned mine problem (Church et al., 1996a) is shown by the water quality data collected by the States under the Clean Water Act, section 305(b). These data document the stream reaches affected by metals from naturally occurring sources as well as from mining, or mineral resource extraction. Permitted discharges from active industrial and mine sites are not covered in the 305(b) data base. Local citizens and state and federal agencies are all part of the collaborative decision process used to select the drainage basins chosen for the AML Initiative pilot studies. Data gathered by these three entities were brought to bear on the watershed selection process. The USGS prepared data available from Federal data bases in the form of interpretative GIS products. Maps of the states of Colorado (Plumlee et al., 1995) and a similar study of the state of Montana ( USGS , unpublished data) were used to select the Animas watershed in southwestern Colorado and the Boulder watershed southwest of Helena Montana as the pilot study areas for the AML Initiative. Thus, the watersheds selected for study were public decisions made on the basis of available scientific data. The role of the U.S. Geological Survey in the Abandoned Mine Land Initiative is outlined in Buxton et al. (1997). The watershed approach to metals contamination in the environment has been studied in several drainage basins (Church et al., 1993, 1994, 1995, 1996b; Kimball et al., 1995). The underlying principles used to successfully discriminate between sources and to quantify the impact of these sources on the environment are the subject of this report.

Conference Paper

Applied Geochemistry Special Issue on Environmental geochemistry of modern mining

Environmental geochemistry is an integral part of the mine-life cycle, particularly for modern mining. The critical importance of environmental geochemistry begins with pre-mining baseline characterization and the assessment of environmental risks related to mining, continues through active mining especially in water and waste management practices, and culminates in mine closure. The enhanced significance of environmental geochemistry to modern mining has arisen from an increased knowledge of the impacts that historical and active mining can have on the environment, and from new regulations meant to guard against these impacts. New regulations are commonly motivated by advances in the scientific understanding of the environmental impacts of past mining. The impacts can be physical, chemical, and biological in nature. The physical challenges typically fall within the purview of engineers, whereas the chemical and biological challenges typically require a multidisciplinary array of expertise including geologists, geochemists, hydrologists, microbiologists, and biologists. The modern mine-permitting process throughout most of the world now requires that potential risks be assessed prior to the start of mining. The strategies for this risk assessment include a thorough characterization of pre-mining baseline conditions and the identification of risks specifically related to the manner in which the ore will be mined and processed, how water and waste products will be managed, and what the final configuration of the post-mining landscape will be. In the Fall 2010, the Society of Economic Geologists held a short course in conjunction with the annual meeting of the Geological Society of America in Denver, Colorado (USA) to examine the environmental geochemistry of modern mining. The intent was to focus on issues that are pertinent to current and future mines, as opposed to abandoned mines, which have been the focus of numerous previous short courses. The geochemical challenges of current and future mines share similarities with abandoned mines, but differences also exist. Mining and ore processing techniques have changed; the environmental footprint of waste materials has changed; environmental protection has become a more integral part of the mine planning process; and most historical mining was done with limited regard for the environment. The 17 papers in this special issue evolved from the Society of Economic Geologists’ short course. The relevant geochemical processes encompass the source, transport, and fate of contaminants related to the life cycle of a mine. Contaminants include metals and other inorganic species derived from geologic sources such as ore and solid mine waste, and substances brought to the site for ore processing, such as cyanide to leach gold. Factors, such as mine-waste mineralogy, hydrologic setting, mine-drainage chemistry, and microbial activity, that affect the hydrochemical risks from mining are reviewed by Nordstrom et al. In another paper, Nordstrom discusses baseline characterization at mine sites in a regulatory framework, and emphasizes the influence of mineral deposits in producing naturally elevated concentrations of many trace elements in surface water and groundwater. Surface water quality in mineralized watersheds is influenced by a number of processes that act on daily (diel) cycles and can produce dramatic variations in trace element concentrations as described by Gammons et al. Pre-mining baseline characterization studies should strive to capture the magnitude of these diel variations. Desbarats et al., using a case study of mine drainage from a gold mine, illustrate how elements that commonly occur as negatively charged species (anions) in solution, such as arsenic as arsenate, behave in an opposite fashion than most metals, which occur as positively charged species (cations). Significant improvement in the understanding of factors that influence the toxicity of metals to aquatic organisms in surface water has highlighted the importance of aqueous chemistry, particularly dissolved organic carbon, as described by Smith et al. Stream sediment contamination is another important pathway for affecting aquatic organisms, as reviewed by Besser et al. Understanding and predicting environmental consequences from mining begins with knowing the mineralogy and mineral reactivity of the ore, the wastes, and of secondary minerals formed later. Jamieson et al. review the importance of mineralogical studies in mine planning and remediation. A number of types of site-specific studies are needed to identify environmental risks related to individual mines. Lapakko reviews the general framework of mine waste characterization studies that are integral to the mine planning process. Hageman et al. present a comparative study of several static tests commonly used to characterize mine waste. The mining and ore processing practices employed at a specific mine site will vary on the basis of the commodities being targeted, the geology of the deposit, the geometry of the deposit, and the mining and ore processing methods used. Thus, these factors, in addition to the waste management practices used, can result in a variety of end-member mine waste features, each of which has its own set of challenges. Open pit mines and underground mines require waste rock to be removed to access ore. Waste rock presents unique problems because the rock is commonly mineralized at sub-economic grades and has not been processed to remove potentially problematic minerals, such as pyrite. Amos et al. examine the salient aspects of the geochemistry of waste rock. Mill tailings – the waste material after ore minerals have been removed – are a volumetrically important solid waste at many mine sites. Their fine grain size and the options for their management make their behavior in the environment distinct from that of waste rock. Lindsay et al. describe some of these differences through three case-study examples. Subaqueous disposal of tailings is another option described by Moncur et al. Cyanide leaching for gold extraction is a common method throughout the world. Johnson describes environmental aspects of cyanidation. Uranium mining presents unique environmental challenges, particularly since in-situ recovery has seen widespread use. Campbell et al. review the environmental geochemistry of uranium mining and current research on bioremediation. Ore concentrates from many types of metal mining undergo a pyrometallurgical technique known as smelting to extract the metal. Slag is the result of smelting, and it may be an environmental liability or a valuable byproduct, as described by Piatak et al. Finally, the open pits that result from surface mining commonly reach below the water table. At the end of mining, these pits may fill to form lakes that become part of the legacy of the mine. Castendyk et al., in two papers, review theoretical aspects of the environmental limnology of pit lakes. They also describe approaches that have been used to model pit lake water balance, wall-rock contributions to pit lake chemistry, pit lake water quality, and limnological processes, such as vertical mixing, through the use of three case studies.

Applied Geochemistry