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USGS2004

Geochemistry of shallow ground water in coastal plain environments in the southeastern United States: Implications for aquifer susceptibility

Ground-water chemistry data from coastal plain environments have been examined to determine the geochemical conditions and processes that occur in these areas and assess their implications for aquifer susceptibility. Two distinct geochemical environments were studied to represent a range of conditions: an inner coastal plain setting having more well-drained soils and lower organic carbon (C) content and an outer coastal plain environment that has more poorly drained soils and high organic C content. Higher concentrations of most major ions and dissolved inorganic and organic C in the outer coastal plain setting indicate a greater degree of mineral dissolution and organic matter oxidation. Accordingly, outer coastal plain waters are more reducing than inner coastal plain waters. Low dissolved oxygen (O2) and nitrate (NO 3-) concentrations and high iron (Fe) concentrations indicate that ferric iron (Fe (III)) is an important electron acceptor in this setting, while dissolved O2 is the most common terminal electron acceptor in the inner coastal plain setting. The presence of a wide range of redox conditions in the shallow aquifer system examined here underscores the importance of providing a detailed geochemical characterization of ground water when assessing the intrinsic susceptibility of coastal plain settings. The greater prevalence of aerobic conditions in the inner coastal plain setting makes this region more susceptible to contamination by constituents that are more stable under these conditions and is consistent with the significantly (p<0.05) higher concentrations of NO3- found in this setting. Herbicides and their transformation products were frequently detected (36% of wells sampled), however concentrations were typically low (<0.1 ??g/L). Shallow water table depths often found in coastal plain settings may result in an increased risk of the detection of pesticides (e.g., alachlor) that degrade rapidly in the unsaturated zone.

Applied Geochemistry↗

USGS2008

Sulfide oxidation and distribution of metals near abandoned copper mines in coastal environments, Prince William Sound, Alaska, USA

The oxidation of sulfide-rich rocks, mostly leftover debris from Cu mining in the early 20th century, is contributing to metal contamination of local coastal environments in Prince William Sound, Alaska. Analyses of sulfide, water, sediment, precipitate and biological samples from the Beatson, Ellamar, and Threeman mine sites show that acidic surface waters generated from sulfide weathering are pathways for redistribution of environmentally important elements into and beyond the intertidal zone at each site. Volcanogenic massive sulfide deposits composed of pyrrhotite and (or) pyrite + chalcopyrite + sphalerite with subordinate galena, arsenopyrite, and cobaltite represent potent sources of Cu, Zn, Pb, As, Co, Cd, and Hg. The resistance to oxidation among the major sulfides increases in the order pyrrhotite ??? sphalerite < chalcopyrite ??? pyrite; thus, pyrrhotite-rich rocks are typically more oxidized than those dominated by pyrite. The pervasive alteration of pyrrhotite begins with rim replacement by marcasite followed by replacement of the core by sulfur, Fe sulfate, and Fe-Al sulfate. The oxidation of chalcopyrite and pyrite involves an encroachment by colloform Fe oxyhydroxides at grain margins and along crosscutting cracks that gradually consumes the entire grain. The complete oxidation of sulfide-rich samples results in a porous aggregate of goethite, lepidocrocite and amorphous Fe-oxyhydroxide enclosing hydrothermal and sedimentary silicates. An inverse correlation between pH and metal concentrations is evident in water data from all three sites. Among all waters sampled, pore waters from Ellamar beach gravels have the lowest pH (???3) and highest concentrations of base metals (to ???25,000 ??g/L), which result from oxidation of abundant sulfide-rich debris in the sediment. High levels of dissolved Hg (to 4100 ng/L) in the pore waters probably result from oxidation of sphalerite-rich rocks. The low-pH and high concentrations of dissolved Fe, Al, and SO4 are conducive to precipitation of interstitial jarosite in the intertidal gravels. Although pore waters from the intertidal zone at the Threeman mine site have circumneutral pH values, small amounts of dissolved Fe2+ in the pore waters are oxidized during mixing with seawater, resulting in precipitation of Fe-oxyhydroxide flocs along the beach-seawater interface. At the Beatson site, surface waters funneled through the underground mine workings and discharged across the waste dumps have near-neutral pH (6.7-7.3) and a relatively small base-metal load; however, these streams probably play a role in the physical transport of metalliferous particulates into intertidal and offshore areas during storm events. Somewhat more acidic fluids, to pH 5.3, occur in stagnant seeps and small streams emerging from the Beatson waste dumps. Amorphous Fe precipitates in stagnant waters at Beatson have high Cu (5.2 wt%) and Zn (2.3 wt%) concentrations that probably reflect adsorption onto the extremely high surface area of colloidal particles. Conversely, crystalline precipitates composed of ferrihydrite and schwertmannite that formed in the active flow of small streams have lower metal contents, which are attributed to their smaller surface area and, therefore, fewer reactive sorption sites. Seeps containing precipitates with high metal contents may contribute contaminants to the marine environment during storm-induced periods of high runoff. Preliminary chemical data for mussels (Mytilus edulis) collected from Beatson, Ellamar, and Threeman indicate that bioaccumulation of base metals is occurring in the marine environment at all three sites.

Applied Geochemistry↗

USGS2005

Chemical openness and potential for misinterpretation of the solute environment of coastal sabkhat

Sabkha deposits in the geologic record are commonly used to interpret the environmental conditions of deposition. Implicit in this use is the assumption that the solute system is chemically closed, that is, the authigenic minerals represent the composition of the fluids in their environment of origin. Thermodynamic and mass-balance calculations based on measurements of water and solute flux of contemporary Abu Dhabi coastal sabkha system, however, demonstrate that the system is open for sodium and chloride, where nearly half of the input is lost, but closed for sulfur, where nearly 100% is retained. Sulfur and chloride isotopes were consistent with this observation. If these sabkha deposits were preserved in the geologic record, they would suggest a solute environment rich in sulfate and poor in chloride; yet the reverse is true. In most coastal-sabkha environments, capillary forces bring solutes and water to the surface, where the water evaporates and halite, carnallite, sylvite, and other soluble minerals are precipitated. Retrograde minerals, such as anhydrite, calcite, dolomite, and gypsum, however, precipitate and accumulate in the capillary zone beneath the surface of the coastal sabkha. Because they possess relatively low solubility and are below the surface, these retrograde minerals are protected from dissolution and physical erosion occurring from infrequent but intense rainfall events. Thus, they are more likely to be preserved in the geological record than highly soluble minerals formed on the surface. ?? 2004 Elsevier B.V. All rights reserved.

Chemical Geology↗

USGS2012

Automating calibration, sensitivity and uncertainty analysis of complex models using the R package Flexible Modeling Environment (FME): SWAT as an example

Parameter optimization and uncertainty issues are a great challenge for the application of large environmental models like the Soil and Water Assessment Tool (SWAT), which is a physically-based hydrological model for simulating water and nutrient cycles at the watershed scale. In this study, we present a comprehensive modeling environment for SWAT, including automated calibration, and sensitivity and uncertainty analysis capabilities through integration with the R package Flexible Modeling Environment (FME). To address challenges (e.g., calling the model in R and transferring variables between Fortran and R) in developing such a two-language coupling framework, 1) we converted the Fortran-based SWAT model to an R function (R-SWAT) using the RFortran platform, and alternatively 2) we compiled SWAT as a Dynamic Link Library (DLL). We then wrapped SWAT (via R-SWAT) with FME to perform complex applications including parameter identifiability, inverse modeling, and sensitivity and uncertainty analysis in the R environment. The final R-SWAT-FME framework has the following key functionalities: automatic initialization of R, running Fortran-based SWAT and R commands in parallel, transferring parameters and model output between SWAT and R, and inverse modeling with visualization. To examine this framework and demonstrate how it works, a case study simulating streamflow in the Cedar River Basin in Iowa in the United Sates was used, and we compared it with the built-in auto-calibration tool of SWAT in parameter optimization. Results indicate that both methods performed well and similarly in searching a set of optimal parameters. Nonetheless, the R-SWAT-FME is more attractive due to its instant visualization, and potential to take advantage of other R packages (e.g., inverse modeling and statistical graphics). The methods presented in the paper are readily adaptable to other model applications that require capability for automated calibration, and sensitivity and uncertainty analysis.

Environmental Modelling and Software↗

USGS2016

Wood decay in desert riverine environments

Floodplain forests and the woody debris they produce are major components of riverine ecosystems in many arid and semiarid regions (drylands). We monitored breakdown and nitrogen dynamics in wood and bark from a native riparian tree, Fremont cottonwood ( Populus deltoides subsp. wislizeni ), along four North American desert streams. We placed locally-obtained, fresh, coarse material [disks or cylinders (&sim;500–2000 cm 3 )] along two cold-desert and two warm-desert rivers in the Colorado River Basin. Material was placed in both floodplain and aquatic environments, and left in situ for up to 12 years. We tested the hypothesis that breakdown would be fastest in relatively warm and moist aerobic environments by comparing the time required for 50% loss of initial ash-free dry matter ( T 50 ) calculated using exponential decay models incorporating a lag term. In cold-desert sites (Green and Yampa rivers, Colorado), disks of wood with bark attached exposed for up to 12 years in locations rarely inundated lost mass at a slower rate ( T 50 = 34 yr) than in locations inundated during most spring floods ( T 50 = 12 yr). At the latter locations, bark alone loss mass at a rate initially similar to whole disks ( T 50 = 13 yr), but which subsequently slowed. In warm-desert sites monitored for 3 years, cylinders of wood with bark removed lost mass very slowly ( T 50 = 60 yr) at a location never inundated (Bill Williams River, Arizona), whereas decay rate varied among aquatic locations ( T 50 = 20 yr in Bill Williams River; T 50 = 3 yr in Las Vegas Wash, an effluent-dominated stream warmed by treated wastewater inflows). Invertebrates had a minor role in wood breakdown except at in-stream locations in Las Vegas Wash. The presence and form of change in nitrogen content during exposure varied among riverine environments. Our results suggest woody debris breakdown in desert riverine ecosystems is primarily a microbial process with rates determined by landscape position, local weather, and especially the regional climate through its effect on the flow regime. The increased warmth and aridity expected to accompany climate change in the North American southwest will likely retard the already slow wood decay process on naturally functioning desert river floodplains. Our results have implications for designing environmental flows to manage floodplain forest wood budgets, carbon storage, and nutrient cycling along regulated dryland rivers.

Arizona, Colorado, Nevada↗

USGS2022

Fungal endophyte effects on invasive Phragmites australis performance in field and growth chamber environments

Manipulating plant microbiomes may provide control of invasive species. Invasive Phragmites australis has spread rapidly in North American wetlands, causing significant declines in native biodiversity. To test microbiome effects on host growth, we inoculated four common fungal endophytes into replicated Phragmites genotypes and monitored their growth in field and growth chamber environments. Inoculations were highly successful in the growth chamber but inoculated plants in the field were rapidly colonized by diverse endophytes from the local environment. There were significant genotype effects and minimal inoculation effects in both experiments with a significant inoculation × genotype interaction on tiller height in the field. Our results demonstrate that endophyte inoculation treatments are feasible, but repeated inoculations may be required to maintain high titer in plants subject to endophyte colonization from the local environment. Future studies should investigate a wider range of fungal endophytes to identify taxa that inhibit Phragmites and other invaders.

Fungal Ecology↗

USGS2004

Ancient wet aeolian environments on Earth: Clues to presence of fossil/live microorganisms on Mars

Ancient wet aeolian (wet-sabkha) environments on Earth, represented in the Entrada and Navajo sandstones of Utah, contain pipe structures considered to be the product of gas/water release under pressure. The sediments originally had considerable porosity allowing the ingress of living plant structures, microorganisms, clay minerals, and fine-grained primary minerals of silt and sand size from the surface downward in the sedimentary column. Host rock material is of a similar size and porosity and presumably the downward migration of fine-grained material would have been possible prior to lithogenesis and final cementation. Recent field emission scanning electron microscopy (FESEM) and EDS (energy-dispersive spectrometry) examination of sands from fluidized pipes in the Early Jurassic Navajo Sandstone reveal the presence of fossil forms resembling fungal filaments, some bearing hyphopodium-like structures similar to those produced by modern tropical leaf parasites. The tropical origin of the fungi is consistent with the paleogeography of the sandstone, which was deposited in a tropical arid environment. These fossil fungi are silicized, with minor amounts of CaCO3 and Fe, and in some cases a Si/Al ratio similar to smectite. They exist as pseudomorphs, totally depleted in nitrogen, adhering to the surfaces of fine-grained sands, principally quartz and orthoclase. Similar wet aeolian paleoenvironments are suspected for Mars, especially following catastrophic sediment-charged floods of enormous magnitudes that are believed to have contributed to rapid formation of large water bodies in the northern plains, ranging from lakes to oceans. These events are suspected to have contributed to a high frequency of constructional landforms (also known as pseudocraters) related to trapped volatiles and water-enriched sediment underneath a thick blanket of materials that were subsequently released to the martian surface, forming piping structures at the near surface and constructional landforms at the surface. This constructional process on Mars may help unravel the complex history of some of the piping structures observed on Earth; on Earth, evidence for the constructional landforms has been all but erased and the near-surface piping structures exposed through millions of years of differential erosion and topographic inversion now occur as high-standing promontories. If the features on both Earth and Mars formed by similar processes, especially involving water and other volatiles, and since the piping structures of Earth provided suitable environments for life to thrive in, the martian features in the northern plains should be considered as prime targets for physico/mineral/chemical/microbiological analyses once the astrobiological exploration of the red planet begins in earnest. ?? 2004 Elsevier Inc. All rights reserved.

Icarus↗

USGS2003

Depositional environments and processes in Upper Cretaceous nonmarine and marine sediments, Ocean Point dinosaur locality, North Slope, Alaska

A 178-m-thick stratigraphic section exposed along the lower Colville River in northern Alaska, near Ocean Point, represents the uppermost part of a 1500 m Upper Cretaceous stratigraphic section. Strata exposed at Ocean Point are assigned to the Prince Creek and Schrader Bluff formations. Three major depositional environments are identified consisting, in ascending order, of floodplain, interdistributary-bay, and shallow-marine shelf. Nonmarine strata, comprising the lower 140 m of this section, consist of fluvial distributaries, overbank sediments, tephra beds, organic-rich beds, and vertebrate remains. Tephras yield isotopic ages between 68 and 72.9 Ma, generally consistent with paleontologic ages of late Campanian-Maastrichtian determined from dinosaur remains, pollen, foraminifers, and ostracodes. Meandering low-energy rivers on a low-gradient, low-relief floodplain carried a suspended-sediment load. The rivers formed multistoried channel deposits (channels to 10 m deep) as well as solitary channel deposits (channels 2-5 m deep). Extensive overbank deposits resulting from episodic flooding formed fining-upward strata on the floodplain. The fining-upward strata are interbedded with tephra and beds of organic-rich sediment. Vertical-accretion deposits containing abundant roots indicate a sheet flood origin for many beds. Vertebrate and nonmarine invertebrate fossils along with plant debris were locally concentrated in the floodplain sediment. Deciduous conifers as well as abundant wetland plants, such as ferns, horsetails, and mosses, covered the coastal plain. Dinosaur skeletal remains have been found concentrated in floodplain sediments in organic-rich bone beds and as isolated bones in fluvial channel deposits in at least nine separate horizons within a 100-m-thick interval. Arenaceous foraminifers in some organic-rich beds and shallow fluvial distributaries indicate a lower coastal plain environment with marginal marine (bay) influence. Marginal marine strata representing interdistributary bay deposits overlie the nonmarine beds and comprise about 15 m of section. Extensive vegetated sand flats, shoals, and shallow channels overlain by shallow bay deposits (less than 7 m deep), containing storm-generated strata characterize the marginal marine beds. Abundant bioturbation and roots characterize the stratigraphic lowest bay deposits; bioturbated sediment, pelecypods, barnacles, and benthic microfossils are found in the overlying bay storm deposits. The sediments abruptly change upward from hummocky cross-stratified bay deposits to a muddy marsh deposit containing shallow organic-rich channels to prograding nonmarine to marginal marine beds. Transgressive, abundantly fossiliferous shallow-marine strata more than 13 m thick comprise the uppermost exposures at Ocean Point. The marine beds overlie nonmarine and bay strata and represent an environment dominated episodically by storms. The age of the marginal marine and marine beds is late Maastrichtian based on pollen. ?? 2003 Elsevier Ltd. All rights reserved.

Cretaceous Research↗

USGS2001

Coastline complexity: A parameter for functional classification of coastal environments

To understand the role of the world's coastal zone (CZ) in global biogeochemical fluxes (particularly those of carbon, nitrogen, phosphorus, and sediments) we must generalise from a limited number of observations associated with a few well-studied coastal systems to the global scale. Global generalisation must be based on globally available data and on robust techniques for classification and upscaling. These requirements impose severe constraints on the set of variables that can be used to extract information about local CZ functions such as advective and metabolic fluxes, and differences resulting from changes in biotic communities. Coastal complexity (plan-view tortuosity of the coastline) is a potentially useful parameter, since it interacts strongly with both marine and terrestrial forcing functions to determine coastal energy regimes and water residence times, and since 'open' vs. 'sheltered' categories are important components of most coastal habitat classification schemes. This study employs the World Vector Shoreline (WVS) dataset, originally developed at a scale of 1:250 000. Coastline complexity measures are generated using a modification of the Angle Measurement Technique (AMT), in which the basic measurement is the angle between two lines of specified length drawn from a selected point to the closest points of intersection with the coastline. Repetition of these measurements for different lengths at the same point yields a distribution of angles descriptive of the extent and scale of complexity in the vicinity of that point; repetition of the process at different points on the coast provides a basis for comparing both the extent and the characteristic scale of coastline variation along different reaches of the coast. The coast of northwestern Mexico (Baja California and the Gulf of California) was used as a case study for initial development and testing of the method. The characteristic angle distribution plots generated by the AMT analysis were clustered using LOICZVIEW, a high dimensionality clustering routine developed for large-scale coastal classification studies. The results show distinctive differences in coastal environments that have the potential for interpretation in terms of both biotic and hydrogeochemical environments, and that can be related to the resolution limits and uncertainties of the shoreline data used. These objective, quantitative measures of coastal complexity as a function of scale can be further developed and combined with other data sets to provide a key component of functional classification of coastal environments. ?? 2001 Elsevier Science B.V. All rights reserved.

Conference Paper↗

USGS2004

Chapter 11 The phosphoria formation: A model for forecasting global selenium sources to the environment

Mining of the Permian Phosphoria Formation — a marine, oil-generating, phosphatic shale — provided the selenium (Se) source implicated in the recent deaths of livestock in southeast Idaho. Field studies and the geohydrologic balance of Se in southeast Idaho confirm risk to animals from exposure to Se through leaching of mined waste shale into streams, discharge of regional drainage, and impoundment of drainage in wetland areas. Forage grown to stabilize waste rock contoured into hills or used as cross-valley fill provides an additional mechanism of Se exposure for the environment (Mackowiak et al., Chapter 19). The average Se concentration of the Meade Peak Member of the Phosphoria Formation is an order of magnitude higher than those of other exploited marine shales that have been linked to incidences of Se toxicosis via oil refining and irrigation in the western United States. The Phosphoria Formation accumulated in an environment that preserved organic matter and contributed to the formation of economic-grade phosphate and oil deposits. The addition of this phosphate-mining case study enables a comprehensive approach to the identification of marine sedimentary Se sources and a more complete range of ecotoxic field studies on which to establish the conditions and anthropogenic connections that determine uptake, release, and recycling of Se in food webs. A constructed conceptual model of Se pollution indicates that ancient organic-rich depositional marine basins, unre- stricted by age, are linked to the contemporary global distribution of Se source rocks. A global plot shows (a) the areal association of major basins hosting phosphate deposits and petroleum source rocks and (b) the importance of paleo-latitudinal setting in influencing the composition of the deposits. Given the geographic patterns, Se emerges as a contami- nant within specific regions of the globe that may limit phosphate mining, oil refining, and drainage of agricultural lands because of potential ecological risks to vulnerable food webs. Selenium also may serve as a geochemical exploration tool that signals an ancient productive biological environment.

Handbook of Exploration and Environmental Geochemi↗

USGS2004

When synthetic chemicals degrade in the environment: What are the absolute fate, effects, and potential risks to humans and the ecosystem?

Various processes degrade synthetic chemicals—pesticides, pharmaceuticals, biocides, and industrials—in the environment ( 1 , 2 ). Consequently, the environment may be exposed to a mixture of the parent compounds and any resulting degradation products (degradates). Recent advances in analytical methodology and greater access to analytical standards have advanced degradates research ( 3 , 4 ). Specifically, research on pesticides has found degradates in surface water ( 5 – 10 ), groundwater ( 11 – 13 ), precipitation ( 14 – 16 ), air ( 17 , 18 ), and sediment ( 19 , 20 ). Pharmaceuticals and detergent degradates also exist in the environment ( 21 – 23 ). Figure 1 shows that degradates were detected as often as or more frequently than the parent compound. Although some regulatory schemes require information about the impacts of degradates on human and environmental health, that information does not exist for many compounds ( 25 , 26 ). Pesticides are the exception. In this article, we bring together the available data to address the environmental behavior of degradates and their effects on organisms and discuss how to identify substances of potential concern. In addition, we cite gaps in the current knowledge and make recommendations for future research requirements. While the article focuses on pesticides, we believe these observations can be extended to biologically active compounds and some industrial substances.

Environmental Science & Technology↗

USGS1998

Species-environment relationships and vegetation patterns: Effects of spatial scale and tree life-stage

Do relationships between species and environmental gradients strengthen or weaken with tree life-stage (i.e., small seedlings, large seedlings, saplings, and mature trees)? Strengthened relationships may lead to distinct forest type boundaries, or weakening connections could lead to gradual ecotones and heterogeneous forest landscapes. We quantified the changes in forest dominance (basal area of tree species by life-stage) and environmental factors (elevation, slope, aspect, intercepted photosynthetically active radiation (PAR), summer soil moisture, and soil depth and texture) across 14 forest ecotones (n = 584, 10 m x 10 m plots) in Rocky Mountain National Park, Colorado, U.S.A. Local, ecotone-specific species-environment relationships, based on multiple regression techniques, generally strengthened from the small seedling stage (multiple R2 ranged from 0.00 to 0.26) to the tree stage (multiple R2 ranged from 0.20 to 0.61). At the landscape scale, combined canonical correspondence analysis (CCA) among species and for all tree life-stages suggested that the seedlings of most species became established in lower-elevation, drier sites than where mature trees of the same species dominated. However, conflicting evidence showed that species-environment relationships may weaken with tree life-stage. Seedlings were only found in a subset of plots (habitats) occupied by mature trees of the same species. At the landscape scale, CCA results showed that species-environment relationships weakened somewhat from the small seedling stage (86.4% of the variance explained by the first two axes) to the tree stage (76.6% of variance explained). The basal area of tree species co-occurring with Pinus contorta Doug. ex. Loud declined more gradually than P. contorta basal area declined across ecotones, resulting in less-distinct forest type boundaries. We conclude that broad, gradual ecotones and heterogeneous forest landscapes are created and maintained by: (1) sporadic establishment of seedlings in sub-optimal habitats; (2) survivorship of saplings and mature trees in a wider range of environmental conditions than seedlings presently endure; and (3) the longevity of trees and persistence of tree species in a broad range of soils, climates, and disturbance regimes.

Plant Ecology↗

USGS2025

Disease, environment, and pollution: Understanding drivers behind tumour outbreaks in sea turtles

Various wildlife diseases of the Anthropocene (the Anthropocene currently has no formal status in the Divisions of Geologic Time https://pubs.usgs.gov/fs/2018/3054/fs20183054.pdf , accessed 4 June 2024) have root causes that are found in human-driven environmental disturbances. Fibropapillomatosis of sea turtles is exemplary of a human-exacerbated wildlife disease, and this case study offers an overview of how we applied a One Health approach and interdisciplinary process to better understand its complexity and highlight the interconnections existing between the health of the environment, and of the wildlife and humans living in it. Persistent organic pollutants (POPs) have known detrimental effects on human and wildlife health. Ubiquitous in the environment, these degradation-resistant chemicals have a high bioaccumulation potential. This case study describes the interdisciplinary plan and One Health design implemented to measure the role of harmful pollutants in the occurrence of a marine turtle panzootic fibropapillomatosis (FP). FP is a neoplastic disease that causes the growth of debilitating tumours on soft tissues and internal organs. Disease incidence has been increasing significantly throughout the Anthropocene and the reasons are still uncertain. The pervasive effect of pollution in marine coastal habitats has often been hypothesized as a driver of high disease prevalence but never fully tested. Our project combines disease ecology, marine field biology, and chemical toxicology in the attempt to unravel the intricate dynamics behind FP. We here describe the complex process used to develop a methodology to measure levels of harmful seawater pollutants such as polychlorinated biphenyls (PCBs), polycyclic aromatic hydrocarbons (PAHs), and organochlorine pesticides (OCPs) in important sea turtle habitats in Florida. The proposed contaminants are among the top priority harmful pollutants, highly carcinogenic in aquatic animals, and bioaccumulate in sea turtles. Although only providing a description of the methodological process, this case study can help future research to apply similar transdisciplinary studies in the context of wildlife diseases. Understanding the effects of anthropogenic-driven pollution activity on ocean health can clarify its consequences to the health of wildlife and humans living in and around that environment.

One Health Cases↗

USGS2016

Relationships between diatoms and tidal environments in Oregon and Washington, USA

A new regional dataset comprising 425 intertidal diatom taxa from 175 samples from 11 ecologically diverse Oregon and Washington estuaries illustrates the importance of compiling a large modern dataset from a range of sites. Cluster analyses and detrended correspondence analysis of the diatom assemblages identify distinct vertical zones within supratidal, intertidal and subtidal environments at six of the 11 study sites, but the abundance of some of the most common species varies widely among and within sites. Canonical correspondence analysis of the regional dataset shows relationships between diatom species and tidal exposure, salinity and substratum (grain size and organic content). Correspondence analyses of local datasets show higher values of explained variation than the analysis of the combined regional dataset. Our results emphasize that studies of the autecology of diatom species require many samples from a range of modern environments to adequately characterize species–environment relationships.

Oregon, Washington↗

USGS2021

The roles of phenotypic plasticity and adaptation in morphology and performance of an invasive species in a novel environment

(1) Species introductions provide insights into rapid adaptation and adaptive phenotypic plasticity, as populations encounter and respond to new environments and selection pressures. However, maladaptive responses are increasingly recognized to also be common in nature. The spotted-wing drosophila, Drosophila suzukii , has rapidly invaded divergent environments providing the opportunity to examine adaptive and maladaptive phenotypic and evolutionary responses to its introduced range. (2) We studied how population density in the field and wing size of individuals varied over an elevational gradient on Hawaii. We then conducted a reciprocal common garden experiment to evaluate how temperature influenced wing size and other correlates of fitness. We did this by reciprocally rearing D. suzukii collected from low and high elevations in temperatures representative of low and high elevation. (3) We observed an elevational cline in wing size, in which wing size increased with elevation. Additionally, flies were more abundant at higher elevation. In the reciprocal common garden experiment, flies emerged faster in the warm, low elevation temperature and developed larger wings in the cool, high elevation temperature. Emergence of flies from high and low elevation sites showed a pattern suggesting maladaptation to the temperature representing their home environment. (4) We suggest that opposing selection pressures, the high vagility of flies, and extreme plasticity in body size constrain adaptation to temperature along an elevational gradient. While successful invasive species such as D. suzukii often exhibit local adaptation, this research demonstrates that invasive species can be successful even without such adaptation.

Hawai'i↗

USGS2018

Generalist feeding strategies in Arctic freshwater fish: A mechanism for dealing with extreme environments

Generalist feeding strategies are favoured in stressful or variable environments where flexibility in ecological traits is beneficial. Species that feed across multiple habitat types and trophic levels may impart stability on food webs through the use of readily available, alternative energy pools. In lakes, generalist fish species may take advantage of spatially and temporally variable prey by consuming both benthic and pelagic prey to meet their energy demands. Using stomach content and stable isotope analyses, we examined the feeding habits of fish species in Alaska's Arctic Coastal Plain (ACP) lakes to determine the prevalence of generalist feeding strategies as a mechanism for persistence in extreme environments (e.g. low productivity, extreme cold and short growing season). Generalist and flexible feeding strategies were evident in five common fish species. Fish fed on benthic and pelagic (or nektonic) prey and across trophic levels. Three species were clearly omnivorous, feeding on fish and their shared invertebrate prey. Dietary differences based on stomach content analysis often exceeded 70%, and overlap in dietary niches based on shared isotopic space varied from zero to 40%. Metrics of community‐wide trophic structure varied with the number and identity of species involved and on the dietary overlap and niche size of individual fishes. Accumulation of energy from shared carbon sources by Arctic fishes creates redundancy in food webs, increasing likely resistance to perturbations or stochastic events. Therefore, the generalist and omnivorous feeding strategies employed by ACP fish may maintain energy flow and food web stability in extreme environments.

Ecology of Freshwater Fish↗

USGS2010

Assessing conservation relevance of organism-environment relations using predicted changes in response variables

1. Organism–environment models are used widely in conservation. The degree to which they are useful for informing conservation decisions – the conservation relevance of these relations – is important because lack of relevance may lead to misapplication of scarce conservation resources or failure to resolve important conservation dilemmas. Even when models perform well based on model fit and predictive ability, conservation relevance of associations may not be clear without also knowing the magnitude and variability of predicted changes in response variables. 2. We introduce a method for evaluating the conservation relevance of organism–environment relations that employs confidence intervals for predicted changes in response variables. The confidence intervals are compared to a preselected magnitude of change that marks a threshold (trigger) for conservation action. To demonstrate the approach, we used a case study from the Chihuahuan Desert involving relations between avian richness and broad-scale patterns of shrubland. We considered relations for three winters and two spatial extents (1- and 2-km-radius areas) and compared predicted changes in richness to three thresholds (10%, 20% and 30% change). For each threshold, we examined 48 relations. 3. The method identified seven, four and zero conservation-relevant changes in mean richness for the 10%, 20% and 30% thresholds respectively. These changes were associated with major (20%) changes in shrubland cover, mean patch size, the coefficient of variation for patch size, or edge density but not with major changes in shrubland patch density. The relative rarity of conservation-relevant changes indicated that, overall, the relations had little practical value for informing conservation decisions about avian richness. 4. The approach we illustrate is appropriate for various response and predictor variables measured at any temporal or spatial scale. The method is broadly applicable across ecological environments, conservation objectives, types of statistical predictive models and levels of biological organization. By focusing on magnitudes of change that have practical significance, and by using the span of confidence intervals to incorporate uncertainty of predicted changes, the method can be used to help improve the effectiveness of conservation efforts.

Methods in Ecology and Evolution↗

USGS2020

Trends of litter decomposition and soil organic matter stocks across forested swamp environments of the southeastern US

A common idea in the discussion of soil carbon processes is that litter decomposition rates and soil carbon stocks are inversely related. To test this overall hypothesis, simultaneous studies were conducted of the relationship of environmental gradients to leaf and wood decomposition, buried cloth decomposition and percent soil organic matter in Taxodium distichum swamps across the Mississippi River Alluvial Valley (MRAV) and northern Gulf of Mexico (GOM) of the US. Decomposition of leaf tissue was 6.2 to 10.9 times faster than wood tissue. Both precipitation and flooding gradients were negatively related to leaf and wood litter decomposition rates based on models developed using Stepwise General Model Selection (MRAV vs. GOM, respectively). Cotton cloth should not be used as a proxy for plant litter without prior testing because cloth responded differently than plant litter to regional environmental gradients in T . distichum swamps. The overall hypothesis was supported in the MRAV because environments with higher precipitation (climate normal) had lower rates of decomposition and higher percent soil organic matter. In the MRAV, higher levels of percent soil organic matter were related to increased 30-year climate normals (30 year averages of precipitation and air temperature comprising southward increasing PrinComp1). Soil organic carbon % in inland vs. coastal T . distichum forests of the MRAV were comparable (range = 1.5% to 26.9% vs. 9.8 to 31.5%, respectively). GOM swamps had lower rates of litter decomposition in more flooded environments. Woody T . distichum detritus had a half-life of up to 300 years in the MRAV, which points to its likely role in the maintenance of inland “teal” soil organic carbon. This unique study can contribute to the discussion of approaches to maintain environments conducive to soil carbon stock maximization.

Arkansas, Florida, Illinois, Louisiana, Mississipp↗