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USGS2016

Sediment budgets, transport, and depositional trends in a large tidal delta

The Sacramento-San Joaquin Delta is the largest delta on the west coast of the United States. It is formed where the confluence of California’s two largest rivers (the Sacramento and San Joaquin) meet the ocean tides and has a significant physical gradient from fluvial to tidal. It is a semidiurnal system (two high and two low tides per day). Today, the Delta is one of the most manipulated in the United States. Once composed of many shallow, meandering and braided dendritic channels and dead-end sloughs and wetlands, it is now a network of leveed canals moving clear water around subsided islands. It historically has supported a biologically diverse tidal wetland complex, of which only 3% remains today (Whipple et al., 2012). It has also witnessed a collapse in the native fish populations. The Delta provides critical habitat for native species, however the hydrology and water quality are complicated by manipulations and diversions to satisfy multiple statewide objectives. Today water managers face co-equal goals of water supply to Californians and maintenance of ecosystem health and function. The Delta is a hub for both a multi-hundred-million dollar agricultural industry and a massive north-to-south water delivery system, supplying the primary source of freshwater to Central Valley farmers and drinking water for two-thirds of California’s population. Large pump facilities support the water demand and draw water from the Delta, further altering circulation patterns and redirecting the net flow toward the export facilities (Monsen et al., 2007). Fluvial sedimentation, along with organic accumulation, creates and sustains the Delta landscape. Hydraulic mining for gold in the watershed during the late 1800s delivered an especially large sediment pulse to the Delta. More recently, from 1955 to the present, a significant sediment decline has been observed that is thought to have been caused mostly by the construction of water storage reservoirs that trap the upstream sediment supply (Wright and Schoellhamer, 2004). Today, one concern is whether the volume of sediment supplied from the upper watershed is sufficient to support ecological function and sustain the Delta landscape and ecosystem in the face of climate change, sea level rise, and proposed restoration associated with the Bay Delta Conservation Plan (http://baydeltaconservationplan.com). Ecosystem health is a management focus and 150,000 acres of restoration is currently proposed, therefore it is of increasingly important to understand the quantity of sediment available for marsh and wetland restoration throughout the Bay Delta Estuary. It is also important to understand the pathways for sediment transport and the sediment budget into each of three Delta regions (figure 1) to guide restoration planning, modeling, and management.

California↗

USGS2010

Accumulation of current-use and organochlorine pesticides in crab embyros from northern California, USA

Invertebrates have long been used as resident sentinels for assessing ecosystem health and productivity. The shore crabs, Hemigrapsus oregonensis and Pachygrapsus crassipes, are abundant in estuaries and beaches throughout northern California, USA and have been used as indicators of habitat conditions in several salt marshes. The overall objectives of the present study were to conduct a lab-based study to test the accumulation of current-use pesticides, validate the analytical method and to analyze field-collected crabs for a suite of 74 current-use and legacy pesticides. A simple laboratory uptake study was designed to determine if embryos could bioconcentrate the herbicide molinate over a 7-d period. At the end of the experiment, embryos were removed from the crabs and analyzed by gas chromatography/mass spectrometry. Although relatively hydrophilic (log K(OW) of 2.9), molinate did accumulate with an estimated bioconcentration factor (log BCF) of approximately 2.5. Following method validation, embryos were collected from two different Northern California salt marshes and analyzed. In field-collected embryos 18 current-use and eight organochlorine pesticides were detected including synthetic pyrethroids and organophosphate insecticides, as well as DDT and its degradates. Lipid-normalized concentrations of the pesticides detected in the field-collected crab embryos ranged from 0.1 to 4 ppm. Pesticide concentrations and profiles in crab embryos were site specific and could be correlated to differences in land-use practices. These preliminary results indicate that embryos are an effective sink for organic contaminants in the environment and have the potential to be good indicators of ecosystem health, especially when contaminant body burden analyses are paired with reproductive impairment assays.

California↗

USGS2000

The importance of ground water in the Great Lakes Region

Ground water is a major natural resource in the Great Lakes Region because it indirectly contributes more than 50 percent of the stream discharge to the Great Lakes. In addition, ground water is the source of drinking water for millions of people in the region, is an important source of supply for agriculture and many industries, and provides a relatively uniform supply of water in some ecologically sensitive areas to sustain plant and animal species. Therefore, to improve our understanding of water-resources issues in the Great Lakes Region, it is important to have a better understanding of the role that ground water plays in the overall hydrologic system of the lakes. The main ground-water resources issues in the Great Lakes Region are related to the amount of ground water, the interaction of ground water and surface water, changes in ground-water quality as development expands, and ecosystem health related to quantity and quality of water. Issues related to the amount of ground water Although the amount of water in the Great Lakes Region is vast, issues related to relatively small quantities of water are being raised more and more often. For example, even though the amount of ground water pumped in the region is small compared to the total amount of water present, ground water is an important source of public-water supply as well as an important source of supply for industrial, agricultural, and domestic needs. Less clearly understood, however, is the relation between the amount of streamflow discharging to the Great Lakes and the large portion of that flow that originates as ground water. The implications of this understanding for water- and land-use practices and, in turn, their effects on water quantity and quality, have not been fully incorporated into a policy framework. To help include information about the implications of the role that ground water plays in addressing regional water issues, a comprehensive analysis of indirect ground-water discharge to the Great Lakes is needed. Direct ground-water discharge to the Great Lakes is not a large factor in water-budget analyses for the Great Lakes. Locally, however, direct ground-water discharge to the Great Lakes may be important, even though the rates and places of discharge are not well known. A long-term evaluation of direct ground-water discharge to the Great Lakes would help place this hydrologic process in proper perspective. Near-shore areas with high rates of direct ground-water discharge may provide valuable habitat for aquatic organisms. Issues related to the interaction of ground water and surface water Withdrawal of ground water removes that water from the watershed when it is consumptively used or when the return flow is discharged to another drainage basin. Under these circumstances, pumping ground water constitutes a diversion of Great Lakes water. Alternatively, ground-water withdrawal could have the opposite effect of diverting ground-water flow into the watershed by altering the ground-water divides. In particular, as withdrawals associated with urban expansion increase, more accurate data on the amount and effects of ground-water use need to be collected. Data on the amounts of ground water pumped both within the watershed and outside, but near the watershed boundaries needs to be collected and evaluated for potential diversion of water to or from the Great Lakes. It is currently thought that both irrigation and ground-water withdrawals near the watershed boundaries constitute relatively small amounts of water; however, both rapidly changing farming practices and rapidly expanding urban communities could alter these amounts in a relatively short timeframe, especially during drought periods. At present, the effects of ground-water withdrawals have been quantified in detail at only a few urban locations. In addition to quantifying the amount of water pumped out of aquifers, it is also important to improve our knowledge of the amount of water that is recharging them. Ground-water recharge rates estimated in earlier studies cover only a small part of the Great Lakes Region. A comprehensive study of ground-water recharge rates for the entire watershed is needed to more completely determine the role of ground water in the hydrologic budget of the Great Lakes. Issues related to changes in ground-water quality as development expands Ground-water quality is as important as quantity for most water uses. As ground-water development proceeds, the possibility of altering the quality of ground water increases. The quality of ground water can be altered when water levels are drawn below the layer that confines the aquifer or by inducing water of lesser quality into an aquifer. Many local studies of these problems have been conducted, but few regional-scale analyses of changes in ground-water quality as a result of ground-water development have been done. Issues related to ecosystem health and quantity and quality of ground water Ground water is essential to maintain wetlands and to provide healthy habitat for other aquatic systems. Wetland hydrology is widely recognized as the primary influence on wetland ecology, development, and persistence, and information about hydrology is essential to understanding and quantifying wetland functions and processes. Studies of the role of ground water in selected wetlands in a range of physiographic settings throughout the Great Lakes watershed are needed to more fully understand the role of wetlands in the Great Lakes Region.

Lake Erie, Lake Huron, Lake Michigan, Lake Ontario↗

USGS2013

Aquatic assessment of the Pike Hill Copper Mine Superfund site, Corinth, Vermont

The Pike Hill Copper Mine Superfund site in Corinth, Orange County, Vermont, includes the Eureka, Union, and Smith mines along with areas of downstream aquatic ecosystem impairment. The site was placed on the U.S. Environmental Protection Agency (USEPA) National Priorities List in 2004. The mines, which operated from about 1847 to 1919, contain underground workings, foundations from historical structures, several waste-rock piles, and some flotation tailings. The mine site is drained to the northeast by Pike Hill Brook, which includes several wetland areas, and to the southeast by an unnamed tributary that flows to the south and enters Cookville Brook. Both brooks eventually drain into the Waits River, which flows into the Connecticut River. The aquatic ecosystem at the site was assessed using a variety of approaches that investigated surface-water quality, sediment quality, and various ecological indicators of stream-ecosystem health. The degradation of surface-water quality is caused by elevated concentrations of copper, and to a lesser extent cadmium, with localized effects caused by aluminum, iron, and zinc. Copper concentrations in surface waters reached or exceeded the USEPA national recommended chronic water-quality criteria for the protection of aquatic life in all of the Pike Hill Brook sampling locations except for the location farthest downstream, in half of the locations sampled in the tributary to Cookville Brook, and in about half of the locations in one wetland area located in Pike Hill Brook. Most of these same locations also contained concentrations of cadmium that exceeded the chronic water-quality criteria. In contrast, surface waters at background sampling locations were below these criteria for copper and cadmium. Comparison of hardness-based and Biotic Ligand Model (BLM)-based criteria for copper yields similar results with respect to the extent or number of stations impaired for surface waters in the affected area. However, the BLM-based criteria are commonly lower values than the hardness-based criteria and thus suggest a greater degree or magnitude of impairment at the sampling locations. The riffle-habitat benthic invertebrate richness and abundance data correlate strongly with the extent of impact based on water quality for both brooks. Similarly, the fish community assessments document degraded conditions throughout most of Pike Hill Brook, whereas the data for the tributary to Cookville Brook suggest less degradation to this brook. The sediment environment shows similar extents of impairment to the surface-water environment, with most sampling locations in Pike Hill Brook, including the wetland areas, and the tributary to Cookville Brook affected. Sediment impairment is caused by elevated copper concentrations, although localized degradation due to elevated cadmium and zinc concentrations was documented on the basis of exceedances of probable effects concentrations (PECs). In contrast to impairment determined by exceedances of PECs, equilibrium-partitioning sediment benchmarks (based on simultaneously extracted metals, acid volatile sulfides, and total organic carbon) predict no toxic effects in sediments at the background locations and uncertain toxic effects throughout Pike Hill Brook and the tributary to Cookville Brook, with the exception of the most downstream Cookville Brook location, which indicated no toxic effects. Acute laboratory toxicity testing using the amphipod Hyalella azteca and the midge Chironomus dilutus on pore waters extracted from sediment in situ indicate impairment (based on tests with H. azteca ) at only one location in Pike Hill Brook and no impairment in the tributary to Cookville Brook. Chronic laboratory sediment toxicity testing using H. azteca and C. dilutus indicated toxicity in Pike Hill Brook at several locations in the lower reach and two locations in the tributary to Cookville Brook. Toxicity was not indicated for either species in sediment from the most acidic metal-rich location, likely due to the low lability of copper in that sediment, as indicated by a low proportion of extractable copper (simultaneously extracted metal (SEM) copper only 5 percent of total copper) and due to the flushing of acidic metal-rich pore water from experimental chambers as overlying test water was introduced before and replaced periodically during the toxicity tests. Depositional habitat invertebrate richness and abundance data generally agreed with the results of toxicity tests and with the extent of impact in the watersheds on the basis of sediment and pore waters. The information was used to develop an overall assessment of the impact of mine drainage on the aquatic system downstream from the Pike Hill copper mines. Most of Pike Hill Brook, including several wetland areas that are all downstream from the Eureka and Union mines, was found to be impaired on the basis of water-quality data and biological assessments of fish or benthic invertebrate communities. In contrast, only one location in the tributary to Cookville Brook, downstream from the Smith mine, is definitively impaired. The biological community begins to recover at the most downstream locations in both brooks due to natural attenuation from mixing with unimpaired streams. On the basis of water quality and biological assessment, the reference locations were of good quality. The sediment toxicity, chemistry, and aquatic community survey data suggest that the sediments could be a source of toxicity in Pike Hill Brook and the tributary to Cookville Brook. On the basis of water quality, sediment quality, and biologic communities, the impacts of mine drainage on the aquatic ecosystem health of the watersheds in the study area are generally consistent with the toxicity suggested from laboratory toxicity testing on pore water and sediments.

Vermont↗

USGS2017

Optimization of human, animal, and environmental health by using the One Health approach

Emerging diseases are increasing burdens on public health, negatively affecting the world economy, causing extinction of species, and disrupting ecological integrity. One Health recognizes that human, domestic animal, and wildlife health are interconnected within ecosystem health and provides a framework for the development of multidisciplinary solutions to global health challenges. To date, most health-promoting interventions have focused largely on single-sector outcomes. For example, risk for transmission of zoonotic pathogens from bush-meat hunting is primarily focused on human hygiene and personal protection. However, bush-meat hunting is a complex issue promoting the need for holistic strategies to reduce transmission of zoonotic disease while addressing food security and wildlife conservation issues. Temporal and spatial separation of humans and wildlife, risk communication, and other preventative strategies should allow wildlife and humans to co-exist. Upstream surveillance, vaccination, and other tools to prevent pathogen spillover are also needed. Clear multi-sector outcomes should be defined, and a systems-based approach is needed to develop interventions that reduce risks and balance the needs of humans, wildlife, and the environment. The ultimate goal is long-term action to reduce forces driving emerging diseases and provide interdisciplinary scientific approaches to management of risks, thereby achieving optimal outcomes for human, animal, and environmental health.

Journal of Veterinary Science↗

USGS2021

Satellites for long-term monitoring of inland U.S. lakes: The MERIS time series and application for chlorophyll-a

Lakes and other surface fresh waterbodies provide drinking water, recreational and economic opportunities, food, and other critical support for humans, aquatic life, and ecosystem health. Lakes are also productive ecosystems that provide habitats and influence global cycles. Chlorophyll concentration provides a common metric of water quality, and is frequently used as a proxy for lake trophic state. Here, we document the generation and distribution of the complete MEdium Resolution Imaging Spectrometer (MERIS; Appendix A provides a complete list of abbreviations) radiometric time series for over 2300 satellite resolvable inland bodies of water across the contiguous United States (CONUS) and more than 5,000 in Alaska. This contribution greatly increases the ease of use of satellite remote sensing data for inland water quality monitoring, as well as highlights new horizons in inland water remote sensing algorithm development. We evaluate the performance of satellite remote sensing Cyanobacteria Index (CI)-based chlorophyll algorithms, the retrievals for which provide surrogate estimates of phytoplankton concentrations in cyanobacteria dominated lakes. Our analysis quantifies the algorithms' abilities to assess lake trophic state across the CONUS. As a case study, we apply a bootstrapping approach to derive a new CI-to-chlorophyll relationship, ChlBS, which performs relatively well with a multiplicative bias of 1.11 (11%) and mean absolute error of 1.60 (60%). While the primary contribution of this work is the distribution of the MERIS radiometric timeseries, we provide this case study as a roadmap for future stakeholders' algorithm development activities, as well as a tool to assess the strengths and weaknesses of applying a single algorithm across CONUS.

Alaska, Minnesota↗

USGS2006

Regional processes in mangrove ecosystems: Spatial scaling relationships, biomass, and turnover rates following catastrophic disturbance

Physiological processes and local-scale structural dynamics of mangroves are relatively well studied. Regional-scale processes, however, are not as well understood. Here we provide long-term data on trends in structure and forest turnover at a large scale, following hurricane damage in mangrove ecosystems of South Florida, U.S.A. Twelve mangrove vegetation plots were monitored at periodic intervals, between October 1992 and March 2005. Mangrove forests of this region are defined by a -1.5 scaling relationship between mean stem diameter and stem density, mirroring self-thinning theory for mono-specific stands. This relationship is reflected in tree size frequency scaling exponents which, through time, have exhibited trends toward a community average that is indicative of full spatial resource utilization. These trends, together with an asymptotic standing biomass accumulation, indicate that coastal mangrove ecosystems do adhere to size-structured organizing principles as described for upland tree communities. Regenerative dynamics are different between areas inside and outside of the primary wind-path of Hurricane Andrew which occurred in 1992. Forest dynamic turnover rates, however, are steady through time. This suggests that ecological, more-so than structural factors, control forest productivity. In agreement, the relative mean rate of biomass growth exhibits an inverse relationship with the seasonal range of porewater salinities. The ecosystem average in forest scaling relationships may provide a useful investigative tool of mangrove community biomass relationships, as well as offer a robust indicator of general ecosystem health for use in mangrove forest ecosystem management and restoration. ?? Springer 2006.

Hydrobiologia↗

USGS2016

Metformin and other pharmaceuticals widespread in wadeable streams of the southeastern United States

Pharmaceutical contaminants are growing aquatic-health concerns and largely attributed to wastewater treatment facility (WWTF) discharges. Five biweekly water samples from 59 small Piedmont (United States) streams were analyzed for 108 pharmaceuticals and degradates using high-performance liquid chromatography and tandem mass spectrometry. The antidiabetic metformin was detected in 89% of samples and at 97% of sites. At least one pharmaceutical was detected at every site (median of 6, maximum of 45), and several were detected at ≥10% of sites at concentrations reported to affect multiple aquatic end points. Maximal cumulative (all detected compounds) concentrations per site ranged from 17 to 16000 ng L –1 . Watershed urbanization, water table depth, soil thickness, and WWTF metrics correlated significantly with in-stream pharmaceutical contamination. Comparable pharmaceutical concentrations and detections at sites with and without permitted wastewater discharges demonstrate the importance of non-WWTF sources and the need for broad-scale mitigation. The results highlight a fundamental biochemical link between global human-health crises like diabetes and aquatic ecosystem health.

Environmental Science & Technology Letters↗

USGS2010

Western Mineral and Environmental Resources Science Center--providing comprehensive earth science for complex societal issues

Minerals in the environment and products manufactured from mineral materials are all around us and we use and come into contact with them every day. They impact our way of life and the health of all that lives. Minerals are critical to the Nation's economy and knowing where future mineral resources will come from is important for sustaining the Nation's economy and national security. The U.S. Geological Survey (USGS) Mineral Resources Program (MRP) provides scientific information for objective resource assessments and unbiased research results on mineral resource potential, production and consumption statistics, as well as environmental consequences of mining. The MRP conducts this research to provide information needed for land planners and decisionmakers about where mineral commodities are known and suspected in the earth's crust and about the environmental consequences of extracting those commodities. As part of the MRP scientists of the Western Mineral and Environmental Resources Science Center (WMERSC or 'Center' herein) coordinate the development of national, geologic, geochemical, geophysical, and mineral-resource databases and the migration of existing databases to standard models and formats that are available to both internal and external users. The unique expertise developed by Center scientists over many decades in response to mineral-resource-related issues is now in great demand to support applications such as public health research and remediation of environmental hazards that result from mining and mining-related activities. Western Mineral and Environmental Resources Science Center Results of WMERSC research provide timely and unbiased analyses of minerals and inorganic materials to (1) improve stewardship of public lands and resources; (2) support national and international economic and security policies; (3) sustain prosperity and improve our quality of life; and (4) protect and improve public health, safety, and environmental quality. The MRP supports approximately 40 USGS research specialists who utilize cooperative agreements with universities, industry, and other governmental agencies to support their collaborative research and information exchange. Scientists of the WMERSC study how and where non-fuel mineral resources form and are concentrated in the earth's crust, where mineral resources might be found in the future, and how mineral materials interact with the environment to affect human and ecosystem health. Natural systems (ecosystems) are complex - our understanding of how ecosystems operate requires collecting and synthesizing large amounts of geologic, geochemical, biologic, hydrologic, and meteorological information. Scientists in the Center strive to understand the interplay of various processes and how they affect the structure, composition, and health of ecosystems. Such understanding, which is then summarized in publicly available reports, is used to address and solve a wide variety of issues that are important to society and the economy. WMERSC scientists have extensive national and international experience in these scientific specialties and capabilities - they have collaborated with many Federal, State, and local agencies; with various private sector organizations; as well as with foreign countries and organizations. Nearly every scientific and societal challenge requires a different combination of scientific skills and capabilities. With their breadth of scientific specialties and capabilities, the scientists of the WMERSC can provide scientifically sound approaches to a wide range of societal challenges and issues. The following sections describe examples of important issues that have been addressed by scientists in the Center, the methods employed, and the relevant conclusions. New directions are inevitable as societal needs change over time. Scientists of the WMERSC have a diverse set of skills and capabilities and are proficient in the collection and integration of

Circular↗

USGS2019

Impacts of saltwater intrusion on wetland prey production and composition in a historically freshwater marsh

Sea level rise is a fundamental driver of ecosystem change and has the potential to shift the spatial distributions of habitats more rapidly than species can adapt. Rapid sea level rise and associated saltwater intrusion have negative impacts on coastal environments, including loss of habitat for species such as sea turtles and shorebirds. In Florida’s largest wetland, the Everglades, the availability of small fishes that are prey for wading birds serve as an indicator of ecosystem health. In the southwestern part of the ecosystem, sea level rise and a reduction in freshwater flow have converted formerly freshwater marsh into an estuarine mangrove-dominated landscape. In this study, we sampled fish communities in this southwest portion of the Everglades exposed to a range of saline conditions. Biomass of native fishes was highest at a salinity value of approximately 25 parts per thousand, while non-native biomass decreased with increasing salinity. Applying salinity change scenarios, we determined that a 10% reduction from the salinity levels recorded in this study would be optimal for biomass of native fishes. The baseline data we collected on non-native fishes at the site will be useful for monitoring as restoration progresses and for managers working on invasive species control. This region has been actively undergoing ecosystem restoration for the last decade, but restored freshwater flow closer to historical conditions is still years away. Without increased freshwater inflow from hydrologic restoration, rising sea levels and saltwater intrusion may provide conservation challenges for wading birds and their prey-base fishes.

Florida↗

USGS2019

Assessing the impact of the Conservation Reserve Program on honey bee health

Insect pollinators are critically important for maintaining U.S. food production and ecosystem health. The upper Midwest is home to more than 40 percent of all U.S. honey bee colonies and is considered by many beekeepers to be America’s last beekeeping refuge. Beekeepers come to this region because their honey bees require high-quality grassland and bee-friendly agricultural crops to make honey and to improve bee health. Agricultural grassland, such as those enrolled in the Conservation Reserve Program (CRP), support flowers that provide bees with the pollen and nectar they need. In 2014, the U.S. Department of Agriculture (USDA) and the U.S. Geological Survey (USGS) formed a partnership to assess the impact of the CRP on honey bee health and determine how the cost-effectiveness of the CRP could be improved to promote pollinator habitat. This USGS assessment has generated important findings that could improve USDA’s program delivery and demonstrates the importance of the CRP to honey bees, beekeepers, agricultural producers, and the public.

Fact Sheet↗

USGS2009

Selected achievements, science directions, and new opportunities for the WEBB small watershed research program

Over nearly two decades, the Water, Energy, and Biogeochemical Budgets (WEBB) small watershed research program of the U.S. Geological Survey (USGS) has documented how water and solute fluxes, nutrient, carbon, and mercury dynamics, and weathering and sediment transport respond to natural and humancaused drivers, including climate, climate change, and atmospheric deposition. Together with a continued and increasing focus on the effects of climate change, more investigations are needed that examine ecological effects (e.g., evapotranspiration, nutrient uptake) and responses (e.g., species abundances, biodiversity) that are coupled with the physical and chemical processes historically observed in the WEBB program. Greater use of remote sensing, geographic modeling, and habitat/watershed modeling tools is needed, as is closer integration with the USGS-led National Phenology Network. Better understanding of process and system response times is needed. The analysis and observation of land-use and climate change effects over time should be improved by pooling data obtained by the WEBB program during the last two decades with data obtained earlier and (or) concurrently from other research and monitoring studies conducted at or near the five WEBB watershed sites. These data can be supplemented with historical and paleo-environmental information, such as could be obtained from tree rings and lake cores. Because of the relatively pristine nature and small size of its watersheds, the WEBB program could provide process understanding and basic data to better characterize and quantify ecosystem services and to develop and apply indicators of ecosystem health. In collaboration with other Federal and State watershed research programs, the WEBB program has an opportunity to contribute to tracking the short-term dynamics and long-term evolution of ecosystem services and health indicators at a multiplicity of scales across the landscape.

Conference Paper↗

USGS2025

Stressor-driven changes in freshwater biological indicators inform spatial management strategies using expert knowledge, observational data, and hierarchical models

Stream ecosystems face continuous pressures from multiple anthropogenic stressors that reshape biological communities and impact ecosystem health and services. Managers can encounter challenges in stewarding ecosystems threatened by multiple stressors, in part because most multiple stressor studies are experimental and, while valuable, offer limited management relevance in targeting these stressors on the landscape. Recent advances in causal inference coupled with large biomonitoring data sets could further understanding of observational stressor-response relationships, aiding management. In this study, we use bioassessment data in the Chesapeake Bay watershed in the mid-Atlantic region of the United States to identify how water quality and physical habitat stressors influence key benthic macroinvertebrate response metrics, considering hierarchical relationships using Bayesian networks. Results suggest water temperature and specific conductivity were prevalent stressors in a mountainous region (northern Appalachians), whereas in an agriculturally dominated region (southern Appalachians) physical habitat alterations were the predominant stressor. In mixed-land use regions (Piedmont & Coastal Plains), specific conductivity was a key stressor, but habitat heterogeneity was important for macroinvertebrate metrics. To illustrate how these stressor-response relationships can be used to guide management decisions, we applied the resist-accept-direct (RAD) framework to develop a portfolio of management options based on predicted changes in macroinvertebrate metrics in response to physical habitat and water quality stressors. For example, accepting changes in areas with co-occurring stressors may be the most feasible option, whereas directing changes through stream restoration or water quality improvements may be effective in areas with single stressor groups. By leveraging observational bioassessment data and causal inference to identify key stressor-response relationships, this research supports decision making by building a simple, strategic management portfolio.

Delaware, Maryland, New York, Pennsylvania, Virgin↗

USGS2015

Nutrient attenuation in rivers and streams, Puget Sound Basin, Washington

Nutrients such as nitrogen and phosphorus are important for aquatic ecosystem health. Excessive amounts of nutrients, however, can make aquatic ecosystems harmful for biota because enhanced growth and decay cycles of aquatic algae can reduce dissolved oxygen in the water. In Puget Sound marine waters, low dissolved oxygen concentrations are observed in a number of marine nearshore areas, and nutrients have been identified as a major stressor to the local ecosystem. Delivery of nutrients from major rivers in the Puget Sound Basin to the marine environment can be large. Therefore, it is important to identify factors related to how nutrients are retained (attenuated) within streams and rivers in the Puget Sound Basin. Physical, chemical, and biological factors related to nutrient attenuation were identified through a review of related scientific literature. Numerous empirical modeling approaches for estimating nutrient attenuation in streams and rivers also were compiled, and a subset of these models was applied to the Puget Sound Basin. In particular, models based on the physical characteristics of a river reach (RivR-N model) and on the physical and biological features of a river reach (v f model) were used and compared for the 17 major rivers draining to the Puget Sound. Data on the relative amount of instream attenuation (the fraction of nutrient input removed per kilometer of stream reach) showed some common and general themes. Firstly, headwater reaches throughout the Puget Sound Basin tend to be better than the main stems of the major rivers at attenuating nitrate and orthophosphorus (ortho-P). Secondly, rivers are more efficient at attenuating nitrate than ortho-P, probably because of the close relation between phosphorus and suspended sediment, which was not captured fully in the models. Thirdly, when comparing the RivR-N and v f models for nitrate, physical characteristics of the channel may be more effective predictors of relative nitrate attenuation for main stem reaches, whereas biological factors may be more effective predictors in headwater reaches. These results are explained in terms of four primary factors of attenuation: sinuosity, channel slope, specific discharge, and uptake velocity (v f ) of the reach. A simple scoring procedure based on these four factors showed that reaches where attenuation scores were high had higher relative attenuation of nutrients from the RivR-N and v f models. This attenuation "scorecard" can be used to quickly assess the potential for a given reach to attenuate nutrients. Seasonal relative attenuation at three case studies was greater in summer months (July through September) and much lower and almost constant from January through June. An analysis of relative attenuation across a range of nutrient concentrations showed that, at some point, relative instream attenuation is minimized. For nitrate, relative attenuation reached a minimum value greater than 3 milligrams of nitrogen per liter (mg N/L) during low flow and 1 mg N/L during high flow. For orthophosphate, minimum relative attenuation was observed at about 0.1 milligram of phosphorus per liter (mg P/L) for both low- and high-flow conditions. Generally, the temporal dynamics of nutrient attenuation are dependent on the travel time through a given reach, the proportion of flow in contact with the sediment, and the amount of biological activity. Improved understanding of nutrient attenuation in Puget Sound Basin will benefit from the compilation of more detailed data for specific discharge, channel slope, and channel sinuosity in Puget Sound streams and rivers. Additionally, field studies examining upstream-downstream changes in nutrient load and field-based measurements of v f are needed. From a management perspective, preservation and improvement of instream nutrient attenuation should focus on increasing the travel time through a reach and contact time of water sediment (reactive) surfaces and lowering nutrient concentrations (and loads) to avoid saturation of instream attenuation and increase attenuation efficiency. These goals can be reached by maintaining and restoring channel-flood plain connectivity, maintaining and restoring healthy riparian zones along streams, managing point and nonpoint nutrient loads to streams and rivers, and restoring channel features that promote attenuation such as the addition of woody debris and maintaining pool-riffle morphologies. Many of these management approaches are already being undertaken during projects aimed to restore quality salmon habitat. Therefore, there is a dual benefit to these projects that also may lead to enhanced potential for nitrogen and phosphorus attenuation.

Washington↗

USGS2018

Necropsy-based wild fish health assessment

Anthropogenic influences from increased nutrients and chemical contaminants, to habitat alterations and climate change, can have significant effects on fish populations. Adverse effects monitoring, utilizing biomarkers from the organismal to the molecular level, can be used to assess the cumulative effects on fishes and other organisms. Fish health has been used worldwide as an indicator of aquatic ecosystem health. The necropsy-based fish health assessment provides data on visible abnormalities and lesions, parasites, condition and organosomatic indices. These can be compared by site, season and sex, as well as temporally, to document change over time. Severity ratings can be assigned to various observations to calculate a fish health index for more quantitative assessment. A drawback of the necropsy-based assessment is that it is based on visual observations and condition factors, which are not as sensitive as tissue and subcellular biomarkers for sublethal effects. Additionally, it is rarely possible to identify causes or risk factors associated with observed abnormalities. So, for instance a raised lesion or "tumor" on the fins, lips or body surface may be a neoplasm. However, it could also be a response to a parasite, chronic inflammation or hyperplasia of normal cells in response to an irritant. Conversely, neoplasms, certain parasites, other infectious agents and many tissue changes are not visible and so may be underestimated. However, during the necropsy-based assessment, blood (plasma), tissues for histopathology (microscopic pathology), genomics and other molecular analyses, and otoliths for aging can be collected. These downstream analyses, together with geospatial analyses, habitat assessments, water quality and contaminant analyses can all be important in comprehensive ecosystem evaluations.

Journal of Visualized Experiments↗

USGS2025

Using angler-submitted records to interpret the spatial seasonality of a large predator (Black bass, Micropterus spp.)

In addition to having cultural, social, and economic significance, large predatory fish affect aquatic communities from the top down and serve as markers of ecosystem health. A focus on large predators is critical for managing ecosystems, conserving species, and guaranteeing the sustainability of aquatic resources. Recreational fishing is inherently biased towards large fish, and anglers possess the strength in numbers and geographical dispersion that enable them to sample the upper tiers of size distributions rarely encountered in standard fish surveys. We sought to further understand the ecological requirements and spatial seasonality of exceptionally sized black bass ( Micropterus spp.) via angler catches. Black bass > 3.6 kg were examined across 147 reservoirs in Texas, USA, with 2817 fish recorded by anglers into an online database in 2018–2024. Most fish were caught in late-winter and early-spring in line with spawning activities that included movements in-and-out of shallow water, nest building, and nest defense. Approximately 54 % of fish were caught with bottom-oriented fishing lures and techniques, and 40 % midwater; surface catches were less common. The efficacy of angling techniques varied seasonally. Those effective in winter were midwater, while those effective in summer were bottom or surface. Conversely, a combination of bottom and midwater techniques were effective in the fall and spring, suggesting cyclic habitat transitions. Moreover, the frequency with which fish were caught over various macrohabitats varied seasonally and cyclically. Our findings have the potential to inform habitat management that supports large predators and their migratory relocations. Our findings also underscore the value of using anglers and technology as sources of difficult-to-obtain fish and environmental data that may evade regular monitoring.

Texas↗

USGS2023

Vital sign monitoring is good medicine for parks

Nearly 70 years ago a young ranger naturalist working in Yellowstone National Park (YNP), Frederick B. Turner, became fascinated with the abundance of frogs next to his cabin at “Soldier Creek” (known as Lodge Creek today). This interest blossomed into Turner’s PhD research and his publication in 1960 about the local population of Columbia spotted frogs (shown to right) became a classic for herpetologists. Unfortunately, the frog population Turner studied had a less positive future in store. Research by Idaho State University biologists in the 1990s revealed the Lodge Creek population had dwindled by 80%. Now, most of Turner’s study area is bereft of spotted frogs, and the remnant population near Yellowstone Lake is affected by a steep decline in reproduction and frequent disease outbreaks. Meanwhile, amphibian population declines documented worldwide, including in national parks of the western U.S., have become common. In YNP and neighboring Grand Teton National Park, we face the important questions of whether widespread amphibian declines are occurring here and if so, what do they portend. Can amphibians inform us about the health and changing conditions of wetlands in YNP? What are the implications of diminishing wetlands for other water-dependent species? And, more broadly, can amphibian and other living organisms serve as reliable indicators or vital signs for park health? In this issue of Yellowstone Science, we discuss how ecosystem science is taking cues from the medical field by relying on vital sign monitoring programs to assess ecosystem health.

Yellowstone Science↗

USGS2023

Chemical characteristics of wildfire ash across the globe and their environmental and socio-economic implications

The mobilisation of potentially harmful chemical constituents in wildfire ash can be a major consequence of wildfires, posing widespread societal risks. Knowledge of wildfire ash chemical composition is crucial to anticipate and mitigate these risks. Here we present a comprehensive dataset on the chemical characteristics of a wide range of wildfire ashes (42 types and a total of 148 samples) from wildfires across the globe and examine their potential societal and environmental implications. An extensive review of studies analysing chemical composition in ash was also performed to complement and compare our ash dataset. Most ashes in our dataset had an alkaline reaction (mean pH 8.8, ranging between 6 – 11.2). Important constituents of wildfire ash were organic carbon (mean: 204 g kg-1), calcium, aluminium, and iron (mean: 47.9, 17.9 and 17.1 g kg-1). Mean nitrogen and phosphorus ranged between 1 - 25 g kg-1, and between 0.2 to 9.9 g kg-1, respectively. The largest concentrations of metals of concern for human and ecosystem health were observed for manganese (mean: 1488 mg kg-1; three ecosystems > 1000 mg kg-1), zinc (mean: 181 mg kg-1; two ecosystems > 500 mg kg-1) and lead (mean: 66.9 mg kg-1; two ecosystems > 200 mg kg-1). Burn severity and sampling timing were key factors influencing ash chemical characteristics like pH, carbon and nitrogen concentrations. The highest readily dissolvable fractions (as a % of ash dry weight) in water were observed for sodium (18%) and magnesium (11.4%). Although concentrations of elements of concern were very close to, or exceeded international contamination standards in some ashes, the actual effect of ash will depend on factors like ash loads and the dilution into environmental matrices such as water, soil and sediment. Our approach can serve as an initial methodological standardisation of wildfire ash sampling and chemical analysis protocols.

Environment International↗