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Evaluating unsupervised methods to size and classify suspended particles using digital in-line holography

Substantial information can be gained from digital in-line holography of marine particles, eliminating depth-of-field and focusing errors associated with standard lens-based imaging methods. However, for the technique to reach its full potential in oceanographic research, fully unsupervised (automated) methods are required for focusing, segmentation, sizing and classification of particles. These computational challenges are the subject of this paper, in which we draw upon data collected using a variety of holographic systems developed at Plymouth University, UK, from a significant range of particle types, sizes and shapes. A new method for noise reduction in reconstructed planes is found to be successful in aiding particle segmentation and sizing. The performance of an automated routine for deriving particle characteristics (and subsequent size distributions) is evaluated against equivalent size metrics obtained by a trained operative measuring grain axes on screen. The unsupervised method is found to be reliable, despite some errors resulting from over-segmentation of particles. A simple unsupervised particle classification system is developed, and is capable of successfully differentiating sand grains, bubbles and diatoms from within the surf-zone. Avoiding miscounting bubbles and biological particles as sand grains enables more accurate estimates of sand concentrations, and is especially important in deployments of particle monitoring instrumentation in aerated water. Perhaps the greatest potential for further development in the computational aspects of particle holography is in the area of unsupervised particle classification. The simple method proposed here provides a foundation upon which further development could lead to reliable identification of more complex particle populations, such as those containing phytoplankton, zooplankton, flocculated cohesive sediments and oil droplets.

Journal of Atmospheric and Oceanic Technology

Bølling-Allerød productivity in the subarctic Pacific driven by seasonal upwelling

The Bølling-Allerød deglacial event is marked by high diatom productivity and opal deposition throughout the subarctic Pacific. This opal could either constitute a strengthened biological pump and thus carbon sequestration, or a weakened biological pump and release of marine-sequestered CO 2 to the atmosphere. We quantify silicic acid supply at IODP Site U1340 in the Bering Sea using biogenic opal and δ 30 Si of Coscinodiscus , a diatom genus. These records, along with diatom environmental indicators, suggest the Bølling-Allerød had high silicic acid availability related to a shift from stratification to seasonal upwelling dynamics. We thus propose the primary cause of the high productivity event was increased macronutrient supply from vertical exchange that injected old, nutrient-rich, CO 2 -rich waters into the surface. Enhanced CO 2 release from the subarctic Pacific may help explain critical intervals of CO 2 rise that occur at the onsets of the Bølling-Allerød and PreBoreal.

Geophysical Research Letters

Origins and nature of large explosive eruptions in the lower East Rift Zone of Kīlauea volcano, Hawaii: Insights from ash characterization and geochemistry

Several powerful explosive eruptions have taken place in the populated lower East Rift Zone of Kīlauea within the past ∼750 years. These have created distinctive landforms, including a tephra rim enclosing Puʻulena Crater immediately south of the Puna Geothermal Venture power station, a tuff cone at Kapoho Crater near the eastern cape of the Island of Hawaiʻi, and a set of littoral cones, the Sand Hill in Nānāwale, where the 1840 lava flow poured into the ocean. Kapoho Crater tuff cone is the largest of these recent pyroclastic features. Mineral, glass, and melt inclusion analyses of tuff cone ash and later fissure-related scoriaceous materials also found within the crater indicate slightly evolved basaltic magmas (1120–1130 °C) that are compositionally similar to parts of the effusive lower East Rift Zone eruptions in 1955 and 2018. Tuff cone magmas were stored at depths of ∼2.5–3.5 km and had pre-eruptive volatile contents (0.5–0.8 wt% H 2 O, 280–340 ppm CO 2 , 1400–1800 ppm S) similar to other Kīlauea eruptions (e.g., 1959, 1960), suggesting that internal magma properties were unlikely to account for the unusual explosiveness of this eruption. Tephra componentry, grain-size analyses, and field observations confirm that the cone grew during a phreatomagmatic eruption mostly of vitric ash, probably where a fissure opened across the coastline or shallow ocean floor nearby. Supporting this hypothesis is the identification of at least two genera of marine diatoms within tuff cone strata. Sand Hill littoral cone ash is also vitric like that of Kapoho Crater, but distinctly coarser with abundant fluidal ejecta represented. In contrast, the Puʻulena Crater eruption deposited lithic ash and related blocks with minor juvenile magmatic contribution; a phreatomagmatic eruption that was dominantly phreatic. Differences in eruption styles are related to unique mechanics that tephra analyses help us interpret. While powerful explosive eruptions in the lower East Rift Zone are rare, they present a definite future hazard for inhabitants in this part of Hawaii.

Hawaii

Seasonal and long-term clarity trend assessment of Lake Tahoe, California–Nevada

The clarity of Lake Tahoe, observed using a Secchi disk on a regular basis since the late 1960s, continues to be a sentinel metric of lake health. Water clarity is influenced by physical and biological processes and has declined in the five decades of monitoring, revealing differences between summer (June–September) and winter (December–March). This document summarizes key findings of a study of Lake Tahoe water clarity, including long-term variability and the relative importance of several influencing variables and processes. This study, prepared in cooperation with the Nevada Division of Environmental Protection, focused on (1) an apparent divergence in clarity trends between summer and winter periods, (2) observed changes in in-lake physical and ecological variables that may influence or control seasonal and annual clarity trends, and (3) five research hypotheses regarding lake clarity that were developed by Lake Tahoe management agencies. Previously collected data were used to complete this study. Trend analysis confirmed that winter clarity stabilized (that is, there is no longer a statistically significant trend up or down) during the last 20 years. Evaluation of clarity for selected months in the 50-year Secchi disk clarity dataset showed that only two summer months, July and August, had statistically significant decreases in clarity from 2000–19. Different subsets of available data were analyzed to reveal the presence or absences of trends for each season, decade, and month. Five hypotheses related to lake clarity were part of the study described by this report. Hypothesis 1 stated that clarity is controlled predominantly by the distribution and volumetric density of fine particles in suspension. This hypothesis was studied using available data describing in-lake fine (0–20 micrometers) particles from 2008–19. Water clarity was negatively correlated with in-lake particle abundance, with particles in the 1.0-4.6 μm range having the greatest effect, consistent with light-scattering theory. Estimated abundances of diatoms of the genus Cyclotella also were found to be negatively correlated with clarity. Data limitations precluded a complete investigation of hypothesis 2, which stated that the observed improvements in winter water clarity are a response to decreasing fine suspended-sediment concentrations in the lake resulting from load reductions from upland sources in and near urbanized areas. Data describing fine-sediment loading from urban areas to the lake were only available since 2014, and only once or twice per month. A slight, statistically significant, negative correlation was identified between urban fine-particle loading and monthly lake clarity with a 4-month lag. Particle abundance in monitored streams is highly correlated with simultaneous particle abundance in the lake. Hypothesis 3 stated that changing hydrodynamic conditions in the lake are increasing thermal stability and resistance to mixing. Trend analyses performed on stability index and buoyancy frequency time series computed from long-term observations of lake temperatures support the hypothesis that hydrodynamic conditions have evolved since 1969 to increase the lake’s resistance to mixing. The date of maximum mixing in winter has become progressively earlier in the year. Lake density stratification, defined using the stability index, is commencing earlier in the year and extending a month longer than in the early years of the monitoring program. Hypothesis 4 stated that the trend of decreasing summer clarity is a result of earlier, prolonged, and more intense stratification. Statistically significant correlations were found between summer clarity and (1) date of onset of stratification, (2) duration of stratification, and (3) buoyancy frequency. Hypothesis 5 stated that ecological (food web) interactions are causing changes in the trends of seasonal or annual clarity; data supporting hypothesis 5 were limited to examples from other systems and to intermittent monitoring of Lake Tahoe and Emerald Bay. The resulting narrative assessment was motivated by a 6-year study of Mysis shrimp disappearance and return in Emerald Bay. The available data and a large body of published literature are consistent with the inference that Mysis shrimp-induced food web changes are causing changes in the trends of seasonal or annual clarity. This food-web study focused on the relations between introduced Mysis shrimp, the native cladocerans ( Daphnia and Bosmina ) that were largely eliminated following Mysis introduction, and the effect on fine particles within the lake. The records of Mysis and other zooplankton data for Lake Tahoe are episodic and have large gaps. Consequently, statistical analyses could not be conducted to compare zooplankton data with other variables. The long-term record, however, indicates that the key effect was a change to the phytoplankton assemblage, where larger diatoms disappeared, likely due to Mysis grazing, only to be replaced by Cyclotella that are an order-of-magnitude smaller and have increased the abundance and volumetric density of total fine particles in suspension (biotic and abiotic).

California

Integrating satellite observations and modern climate measurements with the recent sedimentary record: An example from Southeast Alaska

Assessments of climate change over time scales that exceed the last 100 years require robust integration of high-quality instrument records with high-resolution paleoclimate proxy data. In this study, we show that the recent biogenic sediments accumulating in two temperate ice-free fjords in Southeast Alaska preserve evidence of North Pacific Ocean climate variability as recorded by both instrument networks and satellite observations. Multicore samples EW0408-32MC and EW0408-43MC were investigated with 137 Cs and excess 210 Pb geochronometry, three-dimensional computed tomography, high-resolution scanning XRF geochemistry, and organic stable isotope analyses. EW0408-32MC (57.162°N, 135.357°W, 146 m depth) is a moderately bioturbated continuous record that spans AD ∼1930–2004. EW0408-43MC (56.965°N, 135.268°W, 91 m depth) is composed of laminated diatom oozes, a turbidite, and a hypopycnal plume (river flood) deposit. A discontinuous event-based varve chronology indicates 43MC spans AD ∼1940–1981. Decadal-scale fluctuations in sedimentary Br/Cl ratios accurately reflect changes in marine organic matter accumulation that display the same temporal pattern as that of the Pacific Decadal Oscillation. An estimated Sitka summer productivity parameter calibrated using SeaWiFS satellite observations support these relationships. The correlation of North Pacific climate regime states, primary productivity, and sediment geochemistry indicate the accumulation of biogenic sediment in Southeast Alaska temperate fjords can be used as a sensitive recorder of past productivity variability, and by inference, past climate conditions in the high-latitude Gulf of Alaska.

Alaska

Diet of Mysis diluviana reveals seasonal patterns of omnivory and consumption of invasive species in offshore Lake Michigan

Recent changes in Lake Michigan’s lower trophic levels were hypothesized to have influenced the diet of omnivorous Mysis diluviana. In this study, the stomach contents of Mysis were examined from juvenile and adults collected monthly (April–October) from a 110-m bottom depth site to describe their seasonal diet in LakeMichigan during 2010. Diatoms were the most common prey item ingested, followed by calanoid copepods, and chrysophytes. Dreissenid veligers were documented in mysid diets for the first time in the Great Lakes, and Cercopagis pengoi were not only consumed but even preferred by adults in summer. Diet proportions by weight were dominated by calanoids, although diets showed a marked shift toward cladocerans in autumn. Juvenile and adult Mysis selected primarily for cladoceran prey but also selected for some calanoid copepod taxa. Comparing available Mysis diet data from 1985 to 2010 indicated generally fewer cladocerans and rotifers per gut and less consistent differences in copepods and Peridinium consumed. The seasonal composition of phyto- and zooplankton prey documented herein should be useful to those seeking to understand the trophic role of Mysis in offshore food webs, but caution should be expressed when generalizing similarities in Mysis diets across other lakes because Lake Michigan’s population seems relatively more herbivorous.

Lake Michigan

Diatom evidence on Wisconsin and Holocene events in the Bering Sea

Previous work on surface (modern) sediments has defined diatom species which appear to be good indicators of various oceanographic/ecologic conditions in the North Pacific Ocean and marginal seas. Three long cores from the eastern and northern sides of the Aleutian Basin show changes in species assemblage which can be interpreted in terms of changes in the ocean environment during the last glaciation (Wisconsin) and the Holocene. The early and late Wisconsin maxima were times of prolonged annual sea-ice cover and a short cool period of phytoplankton productivity during the ice-free season. The middle Wisconsin interstade, at least in the southern Bering Sea, had greater seasonal contrast than today, with some winter sea-ice cover, an intensified temperature minimum, and high spring productivity. Variations in clastic and reworked fossil material imply varying degrees of transport to the basin by Alaskan rivers. The results of Jouse?? from the central Bering Sea generally correspond with those presented here, although there are problems with direct comparison. ?? 1983.

Quaternary Research

Didymosphenia geminata: Algal blooms in oligotrophic streams and rivers

In recent decades, the diatom Didymosphenia geminata has emerged as nuisance species in river systems around the world. This periphytic alga forms large "blooms" in temperate streams, presenting a counterintuitive result: the blooms occur primarily in oligotrophic streams and rivers, where phosphorus (P) availability typically limits primary production. The goal of this study is to examine how high algal biomass is formed under low P conditions. We reveal a biogeochemical process by which D. geminata mats concentrate P from flowing waters. First, the mucopolysaccaride stalks of D. geminata adsorb both iron (Fe) and P. Second, enzymatic and bacterial processes interact with Fe to increase the biological availability of P. We propose that a positive feedback between total stalk biomass and high growth rate is created, which results in abundant P for cell division. The affinity of stalks for Fe in association with iron-phosphorus biogeochemistry suggest a resolution to the paradox of algal blooms in oliogotrophic streams and rivers. Copyright 2011 by the American Geophysical Union.

Geophysical Research Letters

Polymethylene-interrupted fatty acids: Biomarkers for native and exotic mussels in the Laurentian Great Lakes

Freshwater organisms synthesize a wide variety of fatty acids (FAs); however, the ability to synthesize and/or subsequently modify a particular FA is not universal, making it possible to use certain FAs as biomarkers. Herein we document the occurrence of unusual FAs (polymethylene-interrupted fatty acids; PMI-FAs) in select freshwater organisms in the Laurentian Great Lakes. We did not detect PMI-FAs in: (a) natural seston from Lake Erie and Hamilton Harbor (Lake Ontario), (b) various species of laboratory-cultured algae including a green alga ( Scenedesmus obliquus ), two cyanobacteria ( Aphanizomenon flos-aquae and Synechococystis sp.), two diatoms ( Asterionella formosa , Diatoma elongatum ) and a chrysophyte ( Dinobryon cylindricum ) or, (c) zooplankton ( Daphnia spp., calanoid or cyclopoid copepods) from Lake Ontario, suggesting that PMI-FAs are not substantively incorporated into consumers at the phytoplankton–zooplankton interface. However, these unusual FAs comprised 4-6% of total fatty acids (on a dry tissue weight basis) of native fat mucket ( Lampsilis siliquoidea ) and plain pocketbook ( L. cardium ) mussels and in invasive zebra ( Dreissena polymorpha ) and quagga ( D. bugensis ) mussels. We were able to clearly partition Great Lakes' mussels into three separate groups (zebra, quagga, and native mussels) based solely on their PMI-FA profiles. We also provide evidence for the trophic transfer of PMI-FAs from mussels to various fishes in Lakes Ontario and Michigan, further underlining the potential usefulness of PMI-FAs for tracking the dietary contribution of mollusks in food web and contaminant-fate studies.

Michigan, Ontario, Prince Edward Island, Wisconsin

Phytoplankton distribution and primary productivity in Donner Lake, California

Donner Lake is an unenriched system in the Lake Tahoe basin of the Sierra Nevada of California. The lake has a surface area of 1.5 square miles (3.9 square kilometres) and a drainage area of 14 mi 2 (36 km 2 ). The maximum depth is about 200 feet (60 metres). Between May and December 1973, the phytoplankton in Donner Lake was represented by 6 classes and at least 25 genera. The dominant green alga was the desmid Cosmarium staurastroides , which comprised about 25 percent of the total phytoplankton collected. The dominant diatom was Asterionella formosa , which comprised about 13 percent of the total phytoplankton. Blue-green algae were represented by Chroococcus sp., but were never abundant and constituted only 1.5 percent of the total organisms sampled. The depth of the euphotic zone from May through September ranged from 35 to 93 feet (11 to 28 metres). Thermal stratification was strong throughout the summer with a maximum temperature difference between the surface and bottom water of 17° Celsius in July. Average phytoplankton concentrations were often greater below the euphotic zone than in the euphotic zone. This pattern of phytoplankton distribution is similar to nearby Lake Tahoe and other oligotrophic lakes. Three primary productivity measurements were made during the study using the carbon-14 method. The primary productivity values were 93, 64, and 56 milligrams of carbon per cubic metre per day for May 17, August 13, and October 16, respectively. The productivity profile in May was shallow and unimodal, whereas the August and October profiles were deeper and biomodal. Dissolved-oxygen concentrations were maximum at the same depths as maximum primary productivity. On the basis of phytoplankton types and their vertical distribution patterns, and upon primary productivity measurements, Donner Lake is considered oligotrophic.

California

Diagenesis of Miocene siliceous shales, Temblor Range, California

Siliceous Monterey Shale and related shales of the Temblor Range, Calif., are subdivided into three depth-controlled zones characterized by different forms of silica. These are, in descending stratigraphic order: (1) Biogenic opal zone, with remains of diatoms and other siliceous organisms, (2) diagenetic cristobalite zone, and (3) diagenetic quartz zone. Using the top of the youngest marine unit, the overlying Etchegoin Formation, as datum, the transition from biogenic opal to disordered cristobalite occurs within the Monterey Shale of Chico Martinez Creek at -730 m, and the ordered cristobalite-to-microquartz transition at about -2,030 m. Temperatures that prevailed at these transition depths while the sedimentary pile lay at the bottom of the sea are estimated at about 50° and 110°C, respectively. Diagenetic cristobalite manifests, downward through a 1,300-m interval of section, a progressive decrease in its d (101) spacing because of a gradual ordering of its internal structure through adjustments in the solid state. Diagenetic microquartz forms only from well-ordered cristobalite that provides the most appropriate concentration of dissolved silica for precipitation of microquartz. Scanning electron micrographs of the silica mineral in pores of rocks made up of disordered cristobalite show aggregates of well-formed bladed crystals, like those described from deep-sea cherts. The pore silica minerals in rocks made up of ordered cristobalite occur as dendritic growths of poorly formed stubby crystals, and the change in crystal habit could be an external expression of the internal ordering process.

California

Rapid Holocene coastal change revealed by high-resolution micropaleontological analysis, Pamlico Sound, North Carolina, USA

Foraminiferal analyses of 404 contiguous samples, supported by diatom, lithologic, geochronologic and seismic data, reveal both rapid and gradual Holocene paleoenvironmental changes in an 8.21-m vibracore taken from southern Pamlico Sound, North Carolina. Data record initial flooding of a latest Pleistocene river drainage and the formation of an estuary 9000. yr ago. Estuarine conditions were punctuated by two intervals of marine influence from approximately 4100 to 3700 and 1150 to 500. cal. yr BP. Foraminiferal assemblages in the muddy sand facies that accumulated during these intervals contain many well-preserved benthic foraminiferal species, which occur today in open marine settings as deep as the mid shelf, and significant numbers of well-preserved planktonic foraminifera, some typical of Gulf Stream waters. We postulate that these marine-influenced units resulted from temporary destruction of the southern Outer Banks barrier islands by hurricanes. The second increase in marine influence is coeval with increased rate of sea-level rise and a peak in Atlantic tropical cyclone activity during the Medieval Climate Anomaly. This high-resolution analysis demonstrates the range of environmental variability and the rapidity of coastal change that can result from the interplay of changing climate, sea level and geomorphology in an estuarine setting. ?? 2011 University of Washington.

North Carolina

Plankton communities and summertime declines in algal abundance associated with low dissolved oxygen in the Tualatin River, Oregon

Phytoplankton populations in the Tualatin River in northwestern Oregon are an important component of the dissolved oxygen (DO) budget of the river and are critical for maintaining DO levels in summer. During the low-flow summer period, sufficient nutrients and a long residence time typically combine with ample sunshine and warm water to fuel blooms of cryptophyte algae, diatoms, green and blue-green algae in the low-gradient, slow-moving reservoir reach of the lower river. Algae in the Tualatin River generally drift with the water rather than attach to the river bottom as a result of moderate water depths, slightly elevated turbidity caused by suspended colloidal material, and dominance of silty substrates. Growth of algae occurs as if on a “conveyor belt” of streamflow, a dynamic system that is continually refreshed with inflowing water. Transit through the system can take as long as 2 weeks during the summer low-flow period. Photosynthetic production of DO during algal blooms is important in offsetting oxygen consumption at the sediment-water interface caused by the decomposition of organic matter from primarily terrestrial sources, and the absence of photosynthesis can lead to low DO concentrations that can harm aquatic life. The periods with the lowest DO concentrations in recent years (since 2003) typically occur in August following a decline in algal abundance and activity, when DO concentrations often decrease to less than State standards for extended periods (nearly 80 days). Since 2003, algal populations have tended to be smaller and algal blooms have terminated earlier compared to conditions in the 1990s, leading to more frequent declines in DO to levels that do not meet State standards. This study was developed to document the current abundance and species composition of phytoplankton in the Tualatin River, identify the possible causes of the general decline in algae, and evaluate hypotheses to explain why algal blooms diminish in midsummer. Plankton and water-quality sample data from 2006 to 2008 were combined with parts of a larger discrete-sample and continuous water-quality monitoring dataset and examined to identify patterns in water-quality and algal conditions since 1991, with a particular emphasis on 2003–08. Longitudinal plankton surveys were conducted in 2006–08 at six sites between river miles (RM) 24.5 and 3.4 at 2- to 3-week intervals, or 5–6 per season, and in-situ bioassay experiments were conducted in 2008 to examine the potential effects of wastewater treatment facility (WWTF) effluent and phosphorus additions on phytoplankton biomass and algal photosynthesis. Phytoplankton and zooplankton community composition, streamflow, and water-quality data were analyzed using multivariate statistical techniques to gain insights into plankton dynamics to determine what factors might be most tied to the abundance and characteristics of the phytoplankton assemblages, and identify possible causes of their declines. The connection between low-DO events and algal declines was clearly evident, as bloom crashes were nearly always followed by periods of low DO. Algal blooms occurred each year during 2006–08, producing maximum chlorophyll-a (Chl-a) values in June or July generally in the range of 50–80 micrograms per liter (µg/L). Bloom crashes and absence of sufficient algal photosynthesis in mid- to late-summer contributed to minimum DO concentrations that were less than the State standard of 6.5 milligrams per liter (mg/L) based on the 30-day mean daily concentration, for 62–74 days each year. At times, the absolute minimum State standard (4 mg/L DO) also was not met. To learn more about why low-DO events occurred, specific algal declines during 2003–08 were scrutinized to determine their likely causal factors. From this information, a series of hypotheses were formulated and evaluated in terms of their ability to explain recent declines in algal populations in the river in late summer. Meteorological, streamflow, turbidity, water temperature, and conductance conditions in the Tualatin River during the 2006–08 summer seasons were not atypical. Natural flow comprised the majority (70–80 percent) of flow each year during spring, but then reduced to 38–40 percent during midsummer when WWTF effluent—which contributed as much as 36 percent—and flow augmentation releases comprised a greater fraction of the flow. Summer 2008 was unusual, however, in the prolonged influence from the Wapato Lake agricultural area near Gaston in the upper part of the basin. The previous winter flooding and levee breach at Wapato Lake caused a much greater area of inundation. As a result, drainage from this area continued into July, much later than normal. A subsequent algal bloom in Wapato Lake then seeded the upper Tualatin River, and this drainage had a profound effect on the downstream plankton community. A large blue-green algae bloom developed—the largest in recent memory—prompting a public health advisory for recreational contact for about two weeks. Algal growths and surface blooms are a common feature of the Tualatin River. Most of the dominant algae have growth forms and morphologies that are well suited for planktonic life, employing spines and gas vacuoles to resist settling, forming colonies, and producing mucilage (or toxins) to resist zooplankton grazing. In 2006–08, 143 algal taxa were identified in 117 main-stem samples; diatoms and green algae were more diverse than blue-green, golden, and cryptophyte algae, although these later groups sometimes dominated the overall volumetric abundance (biovolume). The most frequently occurring taxa, occurring in 97–99 percent of samples, were flagellated cryptophytes Cryptomonas erosa and Rhodomonas minuta. Other important algal taxa included centric diatoms Stephanodiscus, Cyclotella, and Melosira species and colonial green algae Scenedesmus and Actinastrum. These taxa comprised the majority of the algal biovolume during much of the growing season. A general seasonal trend in the phytoplankton assemblages was observed, with dominance by filamentous centric diatoms Stephanodiscus and Melosira in spring and early summer, and flagellated cryptophytes and green algae, particularly Chlamydomonas sp., in late-summer; or, in 2008, dominance by blue-green algae Anabaena flos-aquae and Aphanizomenon flos-aquae during the Wapato Lake bloom event. There were 99 zooplankton taxa identified from the Tualatin River in 2006–08, composed primarily of cladocerans, copepods, and rotifers. A seasonal increase in zooplankton abundance was observed in early summer just as or shortly after the phytoplankton population began to increase, with populations growing to 15,000−120,000 organisms per cubic meter in the lower river. Zooplankton abundance showed a predictable and distinct longitudinal downstream increase, particularly downstream of Highway 99W (RM 11.6). Although grazing rates were not measured, the data suggest that, at times, zooplankton grazing may affect algal abundance and species composition in the Tualatin River, with diatoms becoming relatively less abundant and flagellated cryptophytes and green algae relatively more abundant during periods when zooplankton densities were highest. Multivariate statistical analyses identified soluble reactive phosphorus (SRP), natural flow, flow augmentation, and WWTF effluent as important factors influencing Tualatin River phytoplankton populations, with zooplankton density (particularly rotifers and copepods), specific conductance, chloride, and water temperature also having an important influence. Although SRP was highly correlated with the plankton communities, that correlation was likely the result of high or low algal activity (uptake) as SRP concentrations were often reduced to low levels during blooms. While previous studies have already established that phosphorus, among other factors such as flow, places a theoretical cap on the size of the phytoplankton population in the river, sometimes algal declines occur when SRP concentrations are apparently sufficient. To identify alternative causal factors, additional analyses were performed without SRP to focus on other water-quality parameters, zooplankton density, and flow factors. Considering data for all 3 years and including just those samples from the lower Tualatin River not affected by the 2008 Wapato Lake drainage event, three factors (percentage of reservoir flow augmentation, total natural flow, and rotifer density) best explained variations in the phytoplankton assemblages. Analyses focusing on the possible causes of algal declines included the above multivariate analyses, scrutiny of 10 specific instances of declines in algal populations during 2003–08 including several bloom–crash sequences, and analyses of historic routine watershed monitoring data from Clean Water Services. Six factors were hypothesized to be important in causing bloom crashes or impeding blooms from rebounding in August: (1) light limitation from cloudy weather, (2) a reduction in the plankton inocula or “seed” entering the lower river from upstream sources, (3) increased summer streamflows, (4) changes in the dominant sources of flow as the percentage of flow augmentation and WWTF discharges have increased, (5) zooplankton grazing, and (6) low concentrations of bioavailable phosphorus (<0.015 milligram per liter). All of these hypotheses are supported in some fashion by the available data and statistical analyses. Zooplankton grazing, short-term declines in photosynthesis from cloudy weather, total flow as it affects residence time, and the dominant source of flow are primary factors responsible for the low-DO events caused by declines in algae in the lower Tualatin River during late summer. Cloudy weather and increased turbidity are known to inhibit algal growth in the Tualatin River, and slight increases in turbidity in recent years may be a problem. Upstream sources of algae are critical in determining the characteristics and size of downstream populations, as illustrated by the Wapato Lake bloom in 2008, but more data are needed from upstream to fully define the importance of this connection. The sources of flow, through their differential contribution of plankton inocula (quality and amount), were, at times, important factors affecting phytoplankton populations. While SRP concentrations were often most highly correlated with phytoplankton species community, the bioavailability of phosphorus is still somewhat unknown and there are several sources to consider. Preliminary bioassay tests suggested that while treated wastewater effluent may stimulate algae at 30 percent concentrations, negative effects (or decreased stimulation) on Chl-a and DO production may occur at concentrations of 50 percent. Targeted data collection and future research will be needed to further understand the importance of these factors on Tualatin River phytoplankton. While the data and analysis completed for this report provide insights into future research and monitoring that would be useful to continue, additional monitoring of turbidity, Chl-a, and plankton abundance and species composition in the upper part of the basin would enhance our understanding of plankton dynamics and factors affecting phytoplankton abundance in the lower river. Assessment of the key upstream sources of algal inocula via surveys of the major flow sources as well as tributaries and wetlands would provide useful information for the management of river water quality. Other studies that could prove useful for developing management strategies include targeted experiments to evaluate the bioavailability of phosphorus from a variety of sources. New research on phytoplankton–zooplankton interactions, and studies of planktivorous fish, might also provide insight about food web dynamics and potential “top-down” effects of fish predation on the plankton communities. In addition, further development of neural-network or other water-quality models would help to evaluate management strategies and provide forecasts of water-quality conditions. Finally, periodic future reassessments of the available data with the multivariate statistical tools used in this study would be helpful to assess whether and how plankton communities are changing, and to continue to shed light on the importance of factors shaping the plankton. Although certain types and sizes of algal blooms are undesirable, minimum phytoplankton populations are an important part of aquatic food webs and are needed to maintain healthy levels of DO in the river. By understanding the sources, characteristics, causal factors, and responses of the plankton communities, management strategies can be developed to improve DO conditions in the lower Tualatin River during the important summer low-flow period.

Oregon