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Seasonal and hydrologic variation influences habitat and functional structure of stream fish assemblages

Introduction: Hydrologic variability is a key driver of ecological structure in lotic systems, shaping habitat conditions, taxonomic diversity, and the functional traits that mediate species’ persistence and performance (e.g., reproductive success). While many studies examine taxonomic responses to variation in flows, few evaluate how spatiotemporal hydrologic variation influences the functional organization within stream fish communities. Methods: We quantified seasonal habitat structure and functional trait diversity of fish assemblages across six Ozark Plateau headwater streams representing two contrasting flow regimes: Groundwater Flashy and Runoff/Intermittent Flashy. Fish and habitat data were collected seasonally during a dry year (2002) and a wet year (2003). Functional space was constructed using PCoA of morphological, ecological, and life-history traits, and functional diversity was measured using community weighted means (CWMs), functional richness (FRic), functional evenness (FEve), and functional divergence (FDiv). Results: We found that habitat structure differed strongly by flow regime and season, with Runoff/Intermittent streams exhibiting pronounced reductions in depth, area, and velocity, while groundwater streams remained structurally stable. Functional identity of assemblages was similar across flow regimes, dominated by benthic, hydrodynamic taxa with opportunistic and periodic life-history strategies. However, functional structure differed significantly: FEve and FDiv were consistently lower in Runoff/Intermittent Flashy streams in both years, indicating assemblage dominance of species with similar trait combinations and reduced trait partitioning under variable flow. FRic and taxonomic richness remained stable across seasons and flow regimes, suggesting high functional redundancy despite species turnover. Discussion: Together, results show that flow regime mediates both habitat structural stability and functional organization. As climatic warming and extreme drought increase hydrologic instability in headwaters, functional trait approaches provide a sensitive tool for detecting losses of functional roles that may not be evident by using taxonomic metrics alone.

Arkansas, Kansas, Missouri, Oklahoma

Incorporating location uncertainty improves inference with stop-level North American Breeding Bird Survey data

Ecological models should account for uncertainty to be most effective and useful. Yet, uncertainty from model covariates—unlike that from other sources, such as sampling error or process variability—is seldom explicitly incorporated. This can cause underestimates of uncertainty to cascade through model parameter estimates, predictions, and downstream uses. Burner et al. proposed a method for quantifying uncertainty in covariates and incorporating it into models using informative Bayesian priors. This method was applied to stop-level Breeding Bird Survey (BBS) analyses, where land cover uncertainty at each stop arises from substantial stop location uncertainty. A limited validation of model-estimated land cover, using stops with known locations, indicated the method’s potential effectiveness, but it was not rigorously evaluated. We conduct a robust simulation-based test, generating stop locations, extracting land cover, and simulating bird communities across 210 BBS routes in the upper Midwest. We compare 3 models: a “known” model with true land cover, a “naive” model assuming consistent 800-m stop spacing, and a “full” model using informative priors to estimate land cover. Species parameter estimates and predicted prevalence patterns across gradients in land cover from the full model approached those of the known model and were substantially closer to the true values used in simulations relative to those from the naive model. Naive model parameters were more biased relative to the other models, and credible intervals of predicted species prevalence rarely included the true simulated values. The full model also produced land cover covariate estimates closer to true simulation values relative to the mean informative priors. Our results show that, for the BBS, informative priors enable more accurate stop-level analyses despite location uncertainty. In contrast, naive models that ignore this uncertainty yield poor inferences. More broadly, we demonstrate empirically the utility of informative priors to account for covariate uncertainty in ecological models.

Michigan, Minnesota, Wisconson

The value of electronic tagging and tracking studies for understanding fish–hypoxia interactions

Objective Hypoxia (i.e., low dissolved oxygen availability) is a natural phenomenon but can also be induced by human activities (e.g., nutrient enrichment from runoff). Given that dissolved oxygen is essential for aquatic life, periods of hypoxia tend to have negative consequences (e.g., sublethal disturbances, mortality) for most fishes. Extensive laboratory research has documented hypoxia thresholds and physiological and behavioral outcomes for a variety of freshwater and marine fishes and there is also an extensive body of fieldwork assessing population-level responses (e.g., survival, distribution). Yet, studying how individual fish respond to hypoxia in the wild has proved challenging; electronic tagging and tracking tools (e.g., biotelemetry, biologging) have made it easier to study individual responses to hypoxia and complement other tools like hydroacoustics that tend to focus on population-level responses. Methods We review what has been learned from contemporary studies that employ electronic tagging and tracking tools to understand how fish respond to hypoxia in the wild. Topics explored include identifying and validating hypoxia thresholds, habitat compression, connectivity, mortality, physiological and bioenergetic consequences, and extreme weather conditions. We also consider what we have learned about evaluating various management plans for hypoxia and reflect on how electronic tags have also been used in aquaculture systems and in hybrid studies that combine laboratory and field research. We highlight fishes in Lake Erie as a research narrative to demonstrate how electronic tagging and tracking have markedly improved our understanding of a longstanding hypoxia issue. Results Our synthesis revealed that electronic tagging and tracking have provided critical information on how fish respond to hypoxia in the field, revealing complex trade-offs and compensatory mechanisms as well as cryptic hypoxia-induced mortality. Beyond just illuminating space use and mortality, tags equipped with various sensors are revealing how fish deal with hypoxia in real time in terms of physiology, bioenergetics, and behavior. Conclusions As electronic tagging and tracking methods experience further innovation and are increasingly applied to understand the effects of hypoxia on fish, we expect more unanticipated findings about the effects of hypoxia on fish in all aquatic ecosystems, which will strengthen our ability to manage and mitigate hypoxia. Combining tools and approaches (e.g., lab and field) is perhaps the best way to generate comprehensive understanding.

Transactions of the American Fisheries Society

Restoring dryland water cycles for precipitation feedback and climate stability; a review

Drylands across the globe are experiencing intensifying water scarcity, land degradation, and hydroclimatic extremes. This review integrates evidence from multidecadal field studies, hydrologic monitoring, geomorphic and ecological assessments, remote sensing, and land–atmosphere science to evaluate how restoration influences key components of the terrestrial water cycle. Low-tech natural infrastructure in dryland streams (NIDS)—including check dams, leaky weirs, one-rock dams, and gabions—has emerged as a promising but under-synthesized nature-based solution for restoring hydrologic function in these environments. We describe the mechanisms through which these interventions modify runoff detention, infiltration, sediment and alluvial storage, shallow-groundwater recharge, vegetation recovery, and surface-energy partitioning, and we summarize outcomes across diverse dryland settings. Findings consistently show increased water residence time, enhanced soil-moisture storage, expanded riparian vegetation, extended flow duration, and shifts toward greater latent-heat flux—producing localized cooling and strengthened ecohydrological feedbacks. Building on these localized effects, we articulate a hypothesis that links the spatial extent of restoration, the density of NIDS per unit drainage area, and the magnitude of the latent-to-sensible-heat contrast generated by wetter post-rainfall conditions. Specifically, we hypothesize that when NIDS are implemented at densities permitted by topography and across areas large enough to maintain elevated soil moisture after storm events, the resulting increases in latent heat flux, surface cooling, and boundary-layer moistening may enhance moisture convergence and boundary-layer development, potentially increasing the likelihood or stability of convective precipitation, analogous to how reductions in these processes have contributed to regional drought intensification. These land–atmosphere feedbacks remain untested at scale but represent an important research Frontier. By integrating hydrologic, geomorphic, ecological, and atmospheric perspectives, this review provides a comprehensive framework for considering how low-tech, landscape-scale interventions can strengthen watershed resilience and contribute to climate-relevant nature-based solutions.

Arizona

Nonstationary demographic state-space models using unreplicated counts for species undergoing environmental stressors

A fundamental task in ecological statistics is to estimate abundance and growth rate distributions from wildlife monitoring data to inform conservation management. Modeling time series of wildlife populations presents a number of challenges from both statistical and ecological perspectives, including discreteness; lack of replication; nonstationarity; and observation, demographic, and other phenomenological processes. Nonstationary dynamics are often exhibited by populations undergoing environmental stressors. Models must account for these characteristics to produce reliable estimates of abundance and trends, yet estimation can be challenging with unreplicated data. We propose nonstationary demographic state-space models using unreplicated counts for populations undergoing environmental stressors. A reduced growth rate model matches the complexity of the unreplicated count data, and a fecundity bound on growth rate distributions allows the separation of processes affecting growth rates like environmental stressors from those affecting abundance external to growth rates like migration. NDSSMs allow for the embedding of nonstationary model components, and we explore the use of changepoints, volatility clustering, and migration processes. We apply the proposed nonstationary models in case studies of herons affected by predator/competitor reestablishment and three bat species affected by a fungal pathogen causing white-nose syndrome. Nonstationary models outperform stationary models and generalized linear mixed effects models according to model scoring and visual inspection of predictions, and provide estimates more consistent with published values. Incorporating migration improves model fit universally, even with approximate one-way immigration, most likely because populations are extirpated, recolonized, and increase multiple-fold over the upper bound set by species fecundity. In addition, estimates of the timing and severity of the environmental stressor differed for models with migration. Including nonstationary and demographic components in a fecundity-bounded growth rate model improves inference and benefits interpretability of hyperparameters. In turn, this adjusts uncertainties in predictions of abundance and growth rates over time, providing the ingredients needed for informed conservation analysis and for directing future monitoring of at-risk species.

Journal of Agricultural, Biological and Environmen

Predictable seismic cycles result from structural rupture barriers on oceanic transform faults

Earthquakes of magnitude ( M ) >5.5 on oceanic transform faults (OTFs) repeatedly rupture the same locked patches, sometimes quasiperiodically. These patches are separated by “barriers” that halt earthquake propagation and slip mostly aseismically. However, the physical processes governing this systematic behavior remain unclear. We analyzed two barriers along the Gofar transform fault that have arrested ~15 M 6 earthquakes over the past three decades. Ocean bottom seismometer data indicate that the barriers hosted intense microseismicity before the mainshocks and comprise multistrand faults and transtensional stepovers with 100- to 400-m lateral offset. These characteristics contradict earthquake rupture termination models invoking velocity-strengthening friction or large geometric steps and instead point to damage-enhanced porosity and dilatancy-strengthening mechanisms. By isolating rupture segments, the barriers regulate the quasiperiodic recurrence of OTF earthquakes.

Science

Solute transport and modeling of water quality in a small stream

An injection of chloride, sodium, and stable strontium was made at a constant rate for 3 hours into Uvas Creek, Santa Clara County, Calif., to determine the mass transport processes in a small stream. Five observation points were selected within a 610-metre reach of the stream below the injection site. Water samples were collected at the observation points during and immediately after the injection. A mathematical model of the stream was obtained by solving analytically and optimally the one-dimensional mass transport equation of the solutes in the stream. Comparison of field results with a simplified mathematical model indicates the dominance of convection in the behavior of sodium and chloride. The concentration of chloride and sodium can be closely simulated by the model. However, strontium cannot be well represented by the simplified model, which contains a first-order decay-type sink.

California

Persistent deep long-period seismicity near the Lassen Volcanic Center

Deep long-period (DLP) earthquakes have been observed at many volcanic settings around the world and linked to the magmatic processes that drive volcanic unrest. At the Lassen Volcanic Center (LVC) of the Cascade arc, limited detection of DLP activity hinders classification of anomalous seismic behavior and its relationship to the LVC magmatic system. This study uses a template matching approach with seismic data from temporary nodal and permanent stations to detect and locate DLP earthquakes near the LVC between 2017 and 2024. Within the DLP catalog of 611 events, a transition occurs from scattered (2017–2020) to oscillatory (2021–2024) occurrence rates. During the oscillatory period, regional earthquakes with large amplitude velocity waveforms observed near the LVC are associated with abrupt changes in DLP occurrence rates. Continued monitoring of DLP activity has the potential to better define the processes that drive volcanic unrest at the LVC in the future.

California

A northeast-dipping zone of low frequency earthquakes at the southern edge of Cascadia subduction

Tectonic tremor monitoring occasionally detects events in an anomalous zone in southern Cascadia, 50–100 km west of the main tremor band, near the expected southern edge of the subducting Gorda slab at the Mendocino triple junction. To investigate the geometry and temporal behavior of this tremor, we examine its constituent low-frequency earthquakes (LFEs) by developing 27 stacked LFE waveform templates that we use to detect events from 2018 to 2024. We then relocate LFE sources together with regional seismicity. We find that LFE hypocenters form a northeast-dipping alignment at 22–29 km depth, extending eastward from a zone of micro-earthquakes, ∼15 km south of the southern edge of Gorda slab seismicity. These LFE families exhibit small bursts of activity every few days. Considering the strong world-wide association of tremor and LFEs with high slip-rate, plate-bounding faults, we hypothesize these LFEs may demark the southern edge of Cascadia subduction.

California

Strong shaking from past Cascadia Subduction Zone earthquakes encoded in coastal landforms

Strong earthquakes along subduction zones are often devastating events, but sparse records along some tectonic margins limit our understanding of seismic hazards. Constraining shaking intensities is critical, especially in subduction zones with infrequent but large-magnitude earthquakes like the Cascadia Subduction Zone (CSZ), where the lack of recorded ground motions has led to uncertainty in the severity and potential impacts of future earthquakes. Here we fill this observational gap with a novel inventory of quantitative estimates of past shaking intensities from geotechnical modeling of coastal landforms. One hundred fifty-four deep-seated landslides and 65 fragile geologic features constrain minimum and maximum peak ground accelerations, respectively. These estimates are broadly consistent with model predictions of M9 ruptures, suggesting strong shaking of 0.4–0.8 g during past CSZ earthquakes. Local discrepancies between our geologic shaking constraints and earthquake simulations may inform past rupture behavior, leading to better predictions of shaking intensity for future earthquakes.

California, Oregon, Washington

Groundwater structures fish growth and production across a riverscape

Landscapes are composed of habitat patches and conditions that vary across space and time. While habitat variability and complexity can support important ecological processes and ecosystem services, the dynamic nature of habitats can also constrain organismal growth and production as optimal conditions are fleeting. In riverine ecosystems, groundwater discharge to streams stabilises water temperature and flow regimes, thus mediating how habitat complexity is expressed. Yet, how stable habitats structure growth and production within the broader landscape matrix is not well understood. In this study, we explored the effects of groundwater on spatiotemporal variation in growth and production for juvenile Yellowstone cutthroat trout ( Oncorhynchus virginalis bouvieri ) across the upper Snake River catchment, Wyoming, USA. We combined machine learning techniques and remotely sensed landscape data to estimate groundwater availability across the river network, which we linked to stream temperature regimes and conspecific density. We then used Bayesian hierarchical models to quantify the effects of temperature, density and groundwater on spatiotemporal variation in fish growth and production in 52 focal reaches. Finally, we predicted body size trajectories and trends in total production continuously over both space and time to understand the effect of groundwater at the riverscape scale. Groundwater discharged to streams where topography changes abruptly in valley-bottom areas underlain by coarse glacial deposits. Groundwater stabilised temperature regimes and was associated with high trout densities. Temperature and density, in turn, interacted to influence growth rates: growth increased strongly with temperature, but this effect was reduced when density was high. Accordingly, variation in groundwater availability among stream reaches diversified growth and production regimes. In reaches with low groundwater availability, growth and production declined over time from summer maxima. In contrast, in reaches with high groundwater availability, temporal trends in growth and production were hump-shaped—peaking in autumn—and mean production was greater. At the riverscape scale, temporal asynchrony in growth rates generated convergent spatial variation in growth capacity, but—when combined with density—led to the formation of distinct hotspots of production. Our results demonstrate how groundwater, an important driver of aquatic ecosystem heterogeneity, structures trout growth and production across space and time. Importantly, rare, but stable habitats may disproportionately affect ecological processes and serve as key sources of population diversity at larger spatial scales.

Wyoming

Avian navigation: Comparing the olfactory navigational “map” and the infrasound direction-finding hypotheses to aeronautics

Animal navigation has long been a fascinating but bewildering subject. Humans and animals might well share similar navigational strategies because they developed within the same physical environments. A “map-and-compass” model has been proposed to explain the two-step avian navigational process, but the “map” step has remained elusive. Although scalar values from bicoordinate geomagnetic or atmospheric olfactory gradients have been considered foundational to the avian map, neither has proved convincing engendering decades of controversy. The olfactory map, and an alternative infrasound direction-finding (IDF) hypothesis, are discussed in this review. The olfactory map hypothesis currently requires extensive stable gradients of trace-odor ratios, but such gradients are highly unlikely within a turbulent and rapidly mixed lower atmosphere. The IDF hypothesis, on the other hand, postulates a two-step navigational model analogous to the maritime and aeronautical radio direction-finding technique. This review was also written to encourage further investigation, and direct testing, of the acoustic navigational process. The IDF hypothesis, at present, appears the better explanation of observed avian navigational behavior and accuracy within the atmosphere’s physical environment.

Journal of Comparative Physiology A

Preparing for today's and tomorrow's water-resources challenges in eastern Long Island, New York

Freshwater is a vital natural resource. Although New York is a water-rich State, the wise and economical use of water resources is needed to ensure that there is enough water of adequate quality for both human and ecological needs—both for today and for tomorrow. Nowhere in New York is this more evident than in Nassau and Suffolk Counties on Long Island, where the public water supply is obtained from the sole-source aquifers located directly beneath the nearly 3 million people who live there. In 2023, in eastern Long Island’s Suffolk County, groundwater was pumped from these aquifers by more than 1,100 public water-supply wells to meet the needs of about 1.5 million people.

New York

A comprehensive fault system inversion approach: Methods and application to NSHM23

We present updated inversion‐based fault‐system solutions for the 2023 update to the National Seismic Hazard Model (NSHM23), standardizing earthquake rate model calculations on crustal faults across the western United States. We build upon the inversion methodology used in the Third Uniform California Earthquake Rupture Forecast (UCERF3) to solve for time‐independent rates of earthquakes in an interconnected fault system. The updated model explicitly maps out a wide range of fault recurrence and segmentation behavior (epistemic uncertainty), more completely exploring the solution space of viable models beyond those of UCERF3. We also improve the simulated annealing implementation, greatly increasing computational efficiency (and thus inversion convergence), and introduce an adaptive constraint weight calculation algorithm that helps to mediate between competing constraints. Hazard calculations show that ingredient changes (especially fault and deformation models) are the primary driver of hazard changes between NSHM23 and UCERF3. Updates to the inversion methodology are also consequential near faults in which the slip rate in UCERF3 was poorly fit or was satisfied primarily using large multifault ruptures that are now restricted by explicit b ‐value and segmentation constraints.

Bulletin of the Seismological Society of America

Special issue "Effects of surface geology on seismic motion (ESG): General state-of-research"

To understand and predict the behaviors of strong ground motions incurred during devastating earthquakes, studies focused on the “effects of surface geology (ESG) on seismic motions” (following tradition, herein contracted as: “ESG”) have progressed steadily in the last three decades. These ESG studies typically involve in situ measurements of the wavefield and commonly apply both analytical and computational approaches. Concurrently, improvements in ESG related research can be readily attributed to the proliferation of openly accessible strong motion data, as well as advances in computational power. Nevertheless, there remain significant shortfalls in our understanding of the epistemic and aleatory uncertainties associated with the ESG as demonstrated by phenomena from recent deadly earthquake-related site effects. Thus, investigations toward addressing these deficiencies should be underscored in future earthquake related disaster mitigation efforts. This special issue of Earth, Planets, and Space (EPS) is dedicated to the ongoing efforts by the International Association of Seismology and Physics of the Earth’s Interior (IASPEI) and the International Association of Earthquake Engineering (IAEE) that champion activities promoting studies related to the ESG.

Earth, Planets and Space

Natural source zone depletion of crude oil in the subsurface: Processes controlling mass losses of individual compounds

At many petroleum hydrocarbon spill sites, residual spilled product forms a long-term source of groundwater contamination. The phrase source zone natural depletion is used to refer to the mass loss rates. Overall mass lost under environmental conditions was analyzed using conservative biomarker concentrations for a 1979 oil spill in northern Minnesota, USA. After 40–41 years, an average of 50% of the mass was lost with values ranging from 22% to 57% depending on location. It is also important to understand the composition changes in the source. To understand controls on the losses of individual compounds, concentrations of volatile hydrocarbons in oil samples were compared with aqueous solubilities, and pore-space oil saturations. The results of the comparison show that losses of the oil compounds were controlled by pore-space oil saturations, solubility, and susceptibility to degradation under methanogenic conditions. Compounds that degrade under methanogenic conditions, including toluene, o -xylene, and n -alkanes are more depleted compared to benzene, ethylbenzene, and m - and p -xylene for which losses are dominated by dissolution. These rates and compound-specific behaviors form a foundation for improved modeling approaches and risk analyses.

Minnesota

Analyzing multi-year nitrate concentration evolution in Alabama aquatic systems using a machine learning model

Rising nitrate contamination in water systems poses significant risks to public health and ecosystem stability, necessitating advanced modeling to understand nitrate dynamics more accurately. This study applies the long short-term memory (LSTM) modeling to investigate the hydrologic and environmental factors influencing nitrate concentration dynamics in rivers and aquifers across the state of Alabama in the southeast of the United States. By integrating dynamic data such as streamflow and groundwater levels with static catchment attributes, the machine learning model identifies primary drivers of nitrate fluctuations, offering detailed insights into the complex interactions affecting multi-year nitrate concentrations in natural aquatic systems. In addition, a novel LSTM-based approach utilizes synthetic surface water nitrate data to predict groundwater nitrate levels, helping to address monitoring gaps in aquifers connected to these rivers. This method reveals potential correlations between surface water and groundwater nitrate dynamics, which is particularly meaningful given the lack of water quality observations in many aquifers. Field applications further show that, while the LSTM model effectively captures seasonal trends, limitations in representing extreme nitrate events suggest areas for further refinement. These findings contribute to data-driven water quality management, enhancing understanding of nitrate behavior in interconnected water systems.

Alabama

Refining the earthquake history of south-central Alaska through lake records

The Alaska–Aleutian subduction zone (AASZ) is one of the world's most seismically active plate boundaries and the source of the 1964 M w 9.2 Great Alaska earthquake–the second largest instrumentally recorded earthquake in the world. Understanding the nature and frequency of such earthquakes is necessary for seismic and tsunami hazard assessment, but instrumental and historical records that span less than 150 years are too short to allow a statistically reliable analysis of earthquake recurrence times. This calls for studies of evidence of past earthquakes, extending the earthquake catalog further back in time. Subduction-zone paleoseismology in south-central Alaska is predominantly based on coastal evidence of land-level changes and tsunamis generated by megathrust earthquakes and preserved in the geological record. A complementary approach is lacustrine paleoseismology, which is still a relatively young discipline in Alaska. However, globally, lake basins are well-established high-resolution and continuous recorders of paleoseismic activity along subduction zones, relying on the identification of underwater landslide deposits and turbidites generated by seismic shaking. As a result, lake basins not only register ground shaking from megathrust earthquakes, but also from intraslab and crustal earthquakes, which are typically not accompanied by significant land-level changes. In this review paper, we combine coastal and lacustrine paleoseismology approaches to refine the south-central Alaskan earthquake history by comparing the paleoseismic records from two lakes (i.e., Eklutna Lake, located in the Chugach Mountain Range, and Skilak Lake, situated on the Kenai Peninsula) with the coastal and crustal earthquake catalog in Alaska. The resulting age ranges of all known megathrust earthquakes involving the Alaskan megathrust between the Kodiak and Prince William Sound (PWS) sections are more precise and accurate for the last 1.3 kyrs BP than the previously published age ranges from coastal records. As a result, this study supports the following key conclusions: (1) The 1964 CE earthquake was an exceptionally strong and unique event in the last 2000 years, rupturing the PWS, Kenai, Barren Islands, and Kodiak sections simultaneously. (2) The high-resolution and seasonal markings of the varved lake records now disentangle for the first time closely timed earthquakes, which was not possible based on the coastal evidence alone. (3) No persistent megathrust rupture boundaries exist. So, the possibility of a full rupture of the entire eastern AASZ, from PWS to Semidi cannot be excluded. (4) The rupture pattern in the eastern AASZ reveals superimposed cycles of multi-asperity ruptures (1964 earthquake) and clustered complementary partial ruptures, or rupture cascades. (5) The PWS section hosts the largest asperity in the eastern AASZ. (6) The shaking record of megathrust earthquakes indicates a time-dependent (quasiperiodic) behavior for the study area, but the observation of complementary clusters means that the hazards will not drop to zero but instead may even increase for a neighboring section. (7) The time-independent behavior of intraplate earthquakes implies that the intraslab hazard did not decrease following the 2016 and 2018 earthquakes. This study utilizes an integrated approach for subduction zone paleoseismology as a solution for unraveling recurrence and rupture patterns in Alaska, which can be applied worldwide.

Alaska