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Corrigendum to “A comprehensive analysis of interseasonal and interannual energy and water balance dynamics in semiarid shrubland and forest ecosystems” [Sci. Total Environ. 651 (2019) 381–398]

The authors regret the omission of an author, funding sources, and key support staff. The omitted author and their affiliation is: Matthew J Germino US Geological Survey, Forest and Rangeland Ecosystem Science Center, Boise ID 83706. The correct citation should be: Valayamkunnath, P., Sridhar, V., Zhao, W. Allen, R.G., and Germino, M.J., 2019. A comprehensive analysis of interseasonal and interannual energy and water balance dynamics in semiarid shrubland and forest ecosystems. Science of The Total Environment, 651, 381–398. Additions to the Acknowledgements include: Funding was provided by the U.S. Bureau of Land Management and US Department of Agriculture National Research Initiative. Jeremy Greth, Clarence Robinson, Ricardo Trezza, Jeppe Kjaersgaard, and many other field technicians from Idaho State University and Boise State University assisted in setting up the experiment. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

Science of the Total Environment

GIS-Modeling of island hopping through the Philippines demonstrates trade-offs migrant grey-faced buzzards during oceanic crossings

Migration can be costly with consequences that can influence population trajectories. These costs and consequences are especially heightened during over-water travels, which can be high-risk events for birds. We created spatial models to evaluate potential migratory responses of “oceanic”, island-hopping grey-faced buzzards that encounter variation in landscape parameters and weather as they move through and out of the Philippine archipelago. We constrained the modeled routes to enter the island chain at Basco and to use one of four potential exit points in the south of the country, either Balabac, Bongao, Balut Island, or Cape San Agustin. We used all possible combinations of our three external parameters (stopover sites, water crossings and wind direction) to model alternative migratory routes for each of the four exit points (n = 20 migratory routes). Modeled grey-faced buzzard routes were between 1,582 and 2,970 km. Routes overlapped over eastern and central Luzon, along a leading line created by the Sierra Madre Mountains. Routes also overlapped and suggested unavoidable over-water crossings between Mindoro and Palawan, Negros and Zamboanga del Norte, and Leyte and Surigao. Our models suggest that the optimal migratory strategy for these birds is to find the shortest route to an exit point with the greatest possible access to stopover habitats and fewest open-water crossings under wind resistance. Understanding how each of these external factors affected the geography and characteristics of the migratory routes helps us to understand the context for different migratory strategies of birds that face dangerous open-water crossings on migration.

Journal of Engineering, Environment and Agricultur

Targeting land-use change for nitratenitrogen load reductions in an agricultural watershed

The research was conducted as part of the USDA's Conservation Effects Assessment Project. The objective of the project was to evaluate the environmental effects of land-use changes, with a focus on understanding how the spatial distribution throughout a watershed influences their effectiveness.The Soil and Water AssessmentTool (SWAT) water quality model was applied to the Squaw Creek watershed, which covers 4,730 ha (11,683 ac) of prime agriculture land in southern Iowa. The model was calibrated (2000 to 2004) and validated (1996 to 1999) for overall watershed hydrology and for streamflow and nitrate loadings at the watershed outlet on an annual and monthly basis. Four scenarios for land-use change were evaluated including one scenario consistent with recent land-use changes and three scenarios focused on land-use change on highly erodible land areas, upper basin areas, and floodplain areas. Results for the Squaw Creek watershed suggested that nitrate losses were sensitive to land-use change. If land-use patterns were restored to 1990 conditions, nitrate loads may be reduced 7% to 47% in the watershed and subbasins, whereas converting row crops to grass in highly erodible land, upper basin, and floodplain areas would reduce nitrate loads by 47%, 16%, and 8%, respectively. These SWAT model simulations can provide guidance on how to begin targeting land-use change for nitrate load reductions in agricultural watersheds.

Journal of Soil and Water Conservation

Water data to answer urgent water policy questions: Monitoring design, available data and filling data gaps for determining the effectiveness of agricultural management practices for reducing tributary nutrient loads to Lake Erie -- Addendum describing new, expanded, and planned monitoring sites

This Addendum describes new, expanded, and planned water monitoring sites in the Lake Erie drainage basin that were initiated subsequent to the preparation of Betanzo et al. (2015), the primary report with which this Addendum is associated. In addition to the new water monitoring sites, new programs have been initiated that focus on expansion of agricultural management practices to reduce nutrient transport to Lake Erie and facilitate data sharing between researchers involved with agricultural management and water-quality monitoring. This Addendum evaluates the applicability of these new monitoring sites and programs for answering the case-study policy question explored in Betanzo et al. (2015), “How effective are agricultural management practices at reducing nutrients from nonpoint sources at the watershed scale in the Lake Erie drainage basin?” The water monitoring data needs for answering the case-study policy question identified in Table 18 of Betanzo et al. (2015) were used to identify relevant monitoring sites in this Addendum, specifically focusing on total phosphorus (TP), dissolved reactive phosphorus (DRP)1 , and streamflow data (the complete list of parameters needed appears in Table 3 of Betanzo et al. (2015)). The new information summarized in this Addendum consists of water monitoring and agricultural management activities conducted by agencies and organizations whose data were compiled in the nutrient data set described in Betanzo et al. (2015), and programs identified in public news releases. Although this information is considered to be comprehensive and complete as of February 2015, there may be other new or planned water monitoring programs, of which we are not aware, that are not included here.

Indiana, Michigan, New York, Ohio, Pennsylvania

Potential impacts of agricultural chemicals on waterfowl and other wildlife inhabiting prairie wetlands: An evaluation of research needs and approaches

The potential for agricultural chemicals to enter prairie-pothole wetlands and impact wildlife dependent on these wetlands for survival and reproduction appears to be great. However, the actual risk to wetland wildlife from the inputs of these chemicals cannot be adequately assessed at this time, because of insufficient data. Available data on the use of pesticides in the prairie-pothole region and the toxicity of these pesticides suggest that insecticides pose the greatest hazard to wetland wildlife, particularly birds. The majority of the most widely used insecticides within the region are very toxic to aquatic invertebrates and birds. Of particular concern are the impacts of agricultural chemicals on the quality of the remaining wetlands in the region and whether or not these impacts have contributed to observed declines in waterfowl populations. Although existing data suggest that adult and juvenile waterfowl may not be more sensitive to these chemicals than are other wetland wildlife, their food habits and feeding behaviors may make them more vulnerable to direct toxic effects or chemical-induced changes in the abundance of aquatic invertebrates. Laboratory and field studies in the United States and Canada are critically needed to assess these potential impacts.

Transactions of the North American Wildlife and Na

Habitat amount and edge effects, not perch proximity, nest exposure, or vegetation diversity affect cowbird parasitism in agricultural landscapes

Context Prior research documented relationships between brown-headed cowbird ( Molothrus ater ) brood parasitism and edge effects, proximity of perches, and nest exposure. Those relationships have not been evaluated in agroecosystems containing extremes of fragmentation and vegetation diversity. Objectives We compared three existing hypotheses on how cowbirds locate host nests with two new hypotheses regarding habitat amount and vegetation diversity to determine how the configuration and location of agricultural conservation practices affect grassland bird nest parasitism rates and predicted rates for eight common conservation practices. Methods We assessed cowbird parasitism of grassland bird nests on corn and soybean farms in Iowa, USA, and measured perch proximity, nest exposure, edge effects, habitat amount, and vegetation diversity for each nest. We fit a global generalized linear mixed-effects model and compared importance of model parameters using odds ratios. We predicted parasitism likelihood for every subset model and averaged predictions to explore individual effects. Results The variables that most influenced parasitism rates included main effects for nest initiation day-of-season (OR = 0.71, CI 95 = 0.60–0.84) and the landscape variables of distance to nearest crop edge (0.63, 0.51–0.76) and proportion of grass land cover within 660 m (0.75, 0.57–1.00). We found little support that perch proximity, nest exposure, or native vegetation diversity affected parasitism. We also assessed parasitism likelihood by conservation practice and found no significant differences. Conclusions Our results provide evidence to support the edge effect and habitat amount hypotheses, but not the nest exposure, vegetation diversity, or perch proximity hypotheses.

Iowa

Reduction of solids and nutrient loss from agricultural land by tailwater recovery systems

Best management practices are being implemented throughout the Lower Mississippi River Alluvial Valley with the aim of alleviating pressures placed on downstream aquatic systems by sediment and nutrient losses from agricultural land; however, research evaluating the performance of tailwater recovery (TWR) systems, an increasingly important practice, is limited. This study evaluated the ability of TWR systems to retain sediment and nutrients draining from agricultural landscapes. Composite flow-based samples were collected during flow events (precipitation or irrigation) over a two-year period in six TWR systems. Performance was evaluated by comparing concentrations and loads in water entering TWR systems (i.e., runoff or influent) from agricultural fields to water overflow exiting TWR systems (effluent). Tailwater recovery systems did not reduce concentrations of solids and nutrients, but did reduce loads of solids, phosphorus (P), and nitrogen (N) by 43%, 32%, and 44%, respectively. Annual mean load reductions were 1,142 kg solids, 0.7 kg of P, and 3.8 kg of N. Performance of TWR systems was influenced by effluent volume, system fullness, time since the previous event, and capacity of the TWR system. Mechanistically, TWR systems retain runoff on the agricultural landscape, thereby reducing the amount of sediment and nutrients entering downstream waterbodies. System performance can be improved through manipulation of influential parameters.

Journal of Soil and Water Conservation

Beyond the edge: Linking agricultural landscapes, stream networks, and best management practices

Despite much research and investment into understanding and managing nutrients across agricultural landscapes, nutrient runoff to freshwater ecosystems is still a major concern. We argue there is currently a disconnect between the management of watershed surfaces (agricultural landscape) and river networks (riverine landscape). These landscapes are commonly managed separately, but there is limited cohesiveness between agricultural landscape-focused research and river science, despite similar end goals. Interdisciplinary research into stream networks that drain agricultural landscapes is expanding but is fraught with problems. Conceptual frameworks are useful tools to order phenomena, reveal patterns and processes, and in interdisciplinary river science, enable the joining of multiple areas of understanding into a single conceptual–empirical structure. We present a framework for the interdisciplinary study and management of agricultural and riverine landscapes. The framework includes components of an ecosystems approach to the study of catchment–stream networks, resilience thinking, and strategic adaptive management. Application of the framework is illustrated through a study of the Fox Basin in Wisconsin, USA. To fully realize the goal of nutrient reduction in the basin, we suggest that greater emphasis is needed on where best management practices (BMPs) are used within the spatial context of the combined watershed–stream network system, including BMPs within the river channel. Targeted placement of BMPs throughout the riverine landscape would increase the overall buffering capacity of the system to nutrient runoff and thus its resilience to current and future disturbances.

Journal of Environmental Quality

Hydrologic and ecological investigations in the School Branch watershed, Hendricks County, Indiana—Water years 2016–2018

School Branch in Hendricks County in central Indiana, is a small stream with a variety of agricultural and suburban land uses that drains into the Eagle Creek Reservoir, a major source of drinking water for Indianapolis, Indiana. The School Branch watershed has become the focus of a collaborative partnership of Federal, State, and local agencies; a university research center; and agricultural producers to understand the effects of land use and management practices on water quality and water quantity in the watershed. The U.S. Geological Survey, in cooperation with the Indiana Department of Environmental Management, contributed to the School Branch partnership with the operation of three streamgages (03353415 School Branch at Maloney Road near Brownsburg, Indiana; 03353420 School Branch at County Road 750 North at Brownsburg, Indiana; and 03353430 School Branch at Noble Drive at Brownsburg, Indiana) and the operation of a continuous water-quality gage (also known as a supergage) at County Road 750 North that measured dissolved oxygen, pH, temperature, specific conductance, turbidity, nitrate, and orthophosphate. Additional efforts included the use of passive samplers to identify wastewater indicators; assessment of fish and macroinvertebrate communities and stream habitat to identify ecological impairment; sampling for nutrients and sediment to estimate loads; and using major ions, stable isotopes and nested groundwater monitoring wells at County Road 750 North to determine hydrologic connectivity between the groundwater and surface water. The objectives of this study were to collect surface and groundwater data to analyze the hydrology and water quality within the watershed. Total nitrogen yields were highest at the upstream site, Maloney Road, and indicated a mixture of nitrogen sources in the watershed. Differences found in total nitrogen loading patterns throughout the watershed may be linked to differences in hydrology and land-use management from site to site. The groundwater and surface water were shown to be highly connected, and except for some low-flow periods, the water was flowing from groundwater to the stream for most of the study period. Fish and macroinvertebrate communities show improvement from upstream to downstream, with increases in diversity, richness, and species sensitive to poor water quality and habitat. These increases were most likely due to improved habitat quality at the downstream station.

Indiana

Sediment response to stream restoration in an agricultural watershed

Despite widespread implementation of stream restoration there is limited research of its effectiveness in impaired agricultural settings. To quantify the effects of stream restoration on sediment load, we investigated erosion and deposition along 9 stream reach sites (4 restored, 4 unrestored, and 1 downstream) in Turtle Creek, Pennsylvania, United States - a representative agricultural subbasin of the Chesapeake Bay. These stream restoration projects had the goal of reducing sediment load primarily by installing log structures and regrading streambanks in order to stabilize streambanks and reconnect floodplains. Floodplain and streambank sediment fluxes were quantified over a 3-year period through repeated measurement of clay pads and pins and measurement of sediment bulk density. Uncrewed aerial imagery was collected at 3 of the sites, then processed using structure from motion (SfM) to create high-resolution digital elevation models. Terrain analysis enabled three-dimensional understanding of the generality of the specific field flux measurement locations to the larger stream reach. Restored sites on average had deposition on streambanks compared to streambank erosion along unrestored sites, and approximately two times greater floodplain deposition than unrestored sites. Overall, restored stream had an average seven-fold increase in the net balance (sum of streambank and floodplain) of sediment flux, a 81.2 kg/m/yr increase in retention, compared to unrestored stream. The measured larger streambed particle size distribution (D 50 ) in restored streams also suggests additional improvements to instream habitat quality. Terrain analysis confirmed that the field-based measurements were representative of the larger reach. These results indicate that stream restoration in agricultural watersheds using less-engineered designs can reduce sediment loading and improve stream habitat and health goals.

Pennsylvania

A comprehensive statewide spatiotemporal stream assessment of per- and polyfluoroalkyl substances (PFAS) in an agricultural region of the United States

Public concern regarding per- and polyfluoroalkyl substances (PFAS) has grown substantially in recent years. In addition, research has documented multiple potential agriculture-related release pathways for PFAS (e.g., biosolids and livestock manure). Nevertheless, little research on the environmental prevalence of PFAS has been conducted in agricultural regions of the United States. To fill this gap, we conducted the first statewide spatiotemporal assessment of PFAS in Iowa streams across a region of intense agricultural activity. At least one PFAS was detected at 19 of the 60 stream sites sampled (32%) with 10 different PFAS detected statewide. The number of PFAS detected in the stream samples ranged from one to nine. While PFAS were detected in agricultural streams, sites with the most PFAS detected and in the highest concentration were small, effluent-affected streams where wastewater treatment plant discharge is driving stream PFAS concentrations. No individual PFAS had an exposure:activity ratio (EAR) of >1.0 (exposure concentration shown to trigger observed adverse biological activity). Five stream locations, however, had at least one EAR of >0.001, a precautionary effect screening threshold. Additional targeted temporal sampling would be beneficial to specifically capture potential agricultural source applications and corresponding runoff conditions to fully characterize the prevalence of PFAS in such agricultural systems.

Iowa

Strategic plan for the Coordinated Intermountain Restoration Project

In 1982, the Bureau of Land Management’s (BLM) Idaho State Office began the Intermountain Greenstripping and Rehabilitation Research Project (IGRRP), or the “Greenstripping Program,” to investigate plant materials and technologies that can reduce wildfire incidence and improve rehabilitation practices. Rehabilitation is normally applied as a reactive process to wildfires, yet land managers in the Great Basin wish to become proactive by replacing fire-prone invasive annual grasses with native plants. The Coordinated Intermountain Restoration Project (CIRP) evolved from the Greenstripping Program to conduct research studies and provide technical assistance on restoration of native ecosystems on rangelands that are infested with invasive annual grasses or other invasive or noxious weeds. To accomplish this objective, the CIRP will promote the understanding of ecosystem disturbance dynamics as well as evaluate plant materials, site preparation techniques, weed control methods, seeding equipment, management methods, and monitoring techniques for restoration projects. The CIRP will not address the restoration of forested or woodland (juniper [Juniperus]) ecosystems. It will include a component on fuel management to reduce the impacts of wildfires on semiarid rangeland ecosystems where exotic annual grasses provide the fuel. The people who will benefit directly from this research include land managers and users of public and private lands in the northern Great Basin, the Columbia Plateau, and the Snake River Plain. The CIRP will provide an integration framework for a multidisciplinary approach to research with numerous opportunities for input and collaboration. The U.S. Geological Survey will initially dedicate approximately \$1 million over 5 years (about \$200,000 per year) to jump-start this effort. U.S. Geological Survey funds will establish a science advisory board to oversee the project. This board will contain members of Federal research and management agencies within the region. U.S. Geological Survey funds will support (1) continued development of VegSpec, a computer program that is a restoration expert system, (2) research to examine changes in ecosystem processes when native plant-dominated communities shift to communities dominated by exotic annual grasses, and (3) research to address mechanisms for establishing native plants in locations dominated by exotic annual grasses. Through these initial funds, USGS hopes to leverage additional research with other agencies (e.g., BLM’s Great Basin Restoration Initiative or the Native Plant Materials Development Project, which is an interagency program to supply and manage native plant materials for restoration and rehabilitation on Federal lands) or funding organizations (e.g., the U.S. Department of Agriculture’s [USDA] National Research Initiative Competitive Grants Program, or the USDA’s and U.S. Department of the Interior’s [USDOI] Joint Fire Science Program), and to obtain additional research partners (e.g., university or Federal scientists) willing to expand this effort to address all aspects of this strategic plan.

Information and Technology Report

Threats posed by the Fungal Kingdom to humans, wildlife, and agriculture

The Fungal Kingdom includes at least six million eukaryotic species and is remarkable with respect to its profound impact on global health, biodiversity, ecology, agriculture, manufacturing, and biomedical research. Approximately 625 fungal species have been reported to infect vertebrates, 200 of which can be human-associated, either as commensals and members of our microbiome or as pathogens that cause infectious diseases. These organisms pose a growing threat to human health with the global increase in the incidence of invasive fungal infections, prevalence of fungal allergy, and the evolution of fungal pathogens resistant to some or all current classes of antifungals. More broadly, there has been an unprecedented and worldwide emergence of fungal pathogens impacting animal and plant biodiversity. Approximately 8,000 species of fungi and Oomycetes are associated with plant disease. Indeed, across agriculture, such fungal diseases of plants include new devastating epidemics of trees and jeopardize food security worldwide by causing epidemics in staple and commodity crops that feed billions. Further, ingestion of mycotoxins contributes to ill health and causes cancer. Coordinated international research efforts, enhanced technology translation, and greater policy outreach by scientists are needed to more fully understand the biology and drivers that underlie the emergence of fungal diseases and to mitigate against their impacts. Here, we focus on poignant examples of emerging fungal threats in each of three areas: human health, wildlife biodiversity, and food security.

mBio

Quantifying Landsat’s contributions to U.S. agricultural and forestry applications

The Landsat program has provided over 54 years of multispectral imagery, contributing vital information for agricultural and forestry scientific research and operational activities. Freely available Landsat data have enabled scientists to analyze land use patterns, assess ecological impacts, and develop strategies for sustainable management. We explored Landsat’s pivotal role through the lens of the United States Group on Earth Observations 2023 Earth Observation Assessment (EOA). The EOA included comprehensive surveys of more than 2000 federally supported Earth observation data products. We subsequently analyzed how Landsat satellite data and derived products support agricultural and forestry-related priorities compared to other Earth observation inputs. We evaluated both direct and indirect applications of the data, identifying key users across federal agencies and assessing how Landsat data contribute to critical products, services, and objectives. The results indicate that Landsat provides key information to support diverse activities across agriculture and forestry sectors, such as enhancing food supply, improving resilience to disaster and disturbance events, maximizing ecosystem productivity and conservation, and supporting regulatory requirements and decision-making. The Landsat OLI and TIRS sensors ranked 4th and 10th, respectively, out of 1171 Earth observation inputs identified in the study, underscoring their value to agriculture and forestry.

Remote Sensing

Detection biases yield misleading patterns of species persistence and colonization in fragmented landscapes

Species occurrence patterns, and related processes of persistence, colonization and turnover, are increasingly being used to infer habitat suitability, predict species distributions, and measure biodiversity potential. The majority of these studies do not account for observational error in their analyses despite growing evidence suggesting that the sampling process can significantly influence species detection and subsequently, estimates of occurrence. We examined the potential biases of species occurrence patterns that can result from differences in detectability across species and habitat types using hierarchical multispecies occupancy models applied to a tropical bird community in an agricultural fragmented landscape. Our results suggest that detection varies widely among species and habitat types. Not incorporating detectability severely biased occupancy dynamics for many species by overestimating turnover rates, producing misleading patterns of persistence and colonization of agricultural habitats, and misclassifying species into ecological categories (i.e., forest specialists and generalists). This is of serious concern, given that most research on the ability of agricultural lands to maintain current levels of biodiversity by and large does not correct for differences in detectability. We strongly urge researchers to apply an inferential framework which explicitly account for differences in detectability to fully characterize species-habitat relationships, correctly guide biodiversity conservation in human-modified landscapes, and generate more accurate predictions of species responses to future changes in environmental conditions.

Las Cruces Biological Station

Rehabilitation of lands mined for limestone in the Indian desert

In the Indian desert, the economics of mining is second only to agriculture in importance. However, research on the rehabilitation of land disturbed by mining has only recently received serious attention. An attempt has been made to determine both the qualitative and quantitative success of rehabilitation plans used to revegetate limestone mine spoils in an area near Barna, northwest arid India. Rehabilitation success was achieved using a combination of rainwater harvesting techniques, soil amendment application approaches, plant establishment methods and the selection of appropriate germplasm material (trees, shrubs and grasses). It is expected that the resulting vegetative cover will be capable of self-perpetuation under natural conditions while at the same time meeting the land-use needs of the local people. The minespoils have adequate levels of the major nutrients (except P, Mo and Se) for proper plant and grazing animal health. Levels of organic matter are low whereas total B concentrations are exceptionally high. Also, the population of soil fungi, Azotobactor, and nitrifying bacteria is negligible. Enhanced plant growth was achieved in treated plots, compared to control plots, where spoil moisture storage was improved by 5-45 per cent. Due to the decomposition of farmyard manure and nitrogen fixation by planted leguminous plant species, the electrical conductance of treated mine spoils increased threefold, CaCO3 content decreased from 20??0 to 5??2 per cent, and organic carbon, P, K, and biological activity increased significantly. The rehabilitation protocol used at the site appears to have been successful because plant self-regeneration is occurring. The increased diversity of woody perennials resulted in 'dominance' being better shared among species and 'evenness' being increased within the plant community elements. The early to mid-successional trends are continuing for six years following initial rehabilitation. This study developed methods for the rehabilitation of lands mined for limestone and has also resulted in an understanding of rehabilitation processes in arid regions with an emphasis on the long-term monitoring of rehabilitation success. Copyright ?? 2000 John Wiley & Sons, Ltd.

Land Degradation and Development

Assessing conceptual models for subsurface reactive transport of inorganic contaminants

In many subsurface situations where human health and environmental quality are at risk (e.g., contaminant hydrogeology petroleum extraction, carbon sequestration, etc.),scientists and engineers are being asked by federal agency decision-makers to predict the fate of chemical species under conditions where both reactions and transport are processes of first-order importance. In 2002, a working group (WG) was formed by representatives of the U.S. Geological Survey, Environmental Protection Agency, Department of Energy Nuclear Regulatory Commission, Department of Agriculture, and Army Engineer Research and Development Center to assess the role of reactive transport modeling (RTM) in addressing these situations. Specifically the goals of the WG are to (1) evaluate the state of the art in conceptual model development and parameterization for RTM, as applied to soil,vadose zone, and groundwater systems, and (2) prioritize research directions that would enhance the practical utility of RTM.

Eos, Transactions, American Geophysical Union