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Columbia Environmental Research Center

The U.S. Geological Survey Columbia Environmental Research Center performs research to solve challenging environmental problems related to contaminants and habitat alterations in aquatic and terrestrial ecosystems. The research is interdisciplinary and pursued through partnerships within the U.S. Geological Survey and with national, international, state, and local agencies; nongovernmental organizations; and universities. Research is prioritized to provide science to the U.S. Department of the Interior and other natural resource management agencies to inform rehabilitation of degraded habitats and imperiled fish and wildlife populations. The Columbia Environmental Research Center was established in 1966 in Columbia, Missouri, as the U.S. Fish and Wildlife Service’s Fish Pesticide Research Laboratory; the Columbia Environmental Research Center was incorporated into the U.S. Geological Survey in 1996. The U.S. Geological Survey’s staff of 130 includes 90 scientists of which one-half have advanced degrees in ecology, toxicology, biology, biochemistry, chemistry, hydrology, geology, and information technology.

Missouri

Climate change

Amphibian ecology and distribution are strongly correlated with climate. Regional patterns of amphibian biodiversity are intimately linked to temperature, evapotranspiration rate, and clines in humidity. While amphibians are and will continue to be adversely affected by recent and projected changes in climate, research suggests that adaptation may happen more slowly than the expected rate of environmental shifts. Here, we review conservation-relevant aspects of both realised and potential impacts of climate change, and outline options for amphibian conservation planning and management. Recent advances in our understanding of climate change impacts on amphibians have primarily stemmed from ecological modelling and direct assessment of climatic tolerances and dispersal capacities through physiological assays, landscape genetics, and dispersal tracking. Anthropogenic climate change has already altered amphibian assemblages and their impacts on ecosystem functioning and services. Because of known and hypothesised ecological tolerances, many amphibians might have reached or exceeded most limits in their ability to adapt to or tolerate further climate change, however the uncertainties are substantial. Implementation of conservation planning and action can help to forestall severe impacts of environmental shifts. Scientific research and science-based decision-making and policy development have already lagged; the current pace of conservation planning and action may not allow for effective identification of threats and mitigation. An increased response rate could help to avert further loss of amphibian biodiversity and decay of ecosystem services. The lack of basic field research in natural habitats continues to be an underlying challenge. We suggest priority areas of research to include the development of biologically realistic predictive models of amphibian response to climate change, field verification of model estimates and key parameters, population monitoring across multiple sites and taxa, and a combination of efforts within and across ecosystems to understand how impacts of climate change can be better mitigated.

Book chapter

Biota connect aquatic habitats throughout freshwater ecosystem mosaics

Freshwater ecosystems are linked at various spatial and temporal scales by movements of biota adapted to life in water. We review the literature on movements of aquatic organisms that connect different types of freshwater habitats, focusing on linkages from streams and wetlands to downstream waters. Here, streams, wetlands, rivers, lakes, ponds, and other freshwater habitats are viewed as dynamic freshwater ecosystem mosaics (FEMs) that collectively provide the resources needed to sustain aquatic life. Based on existing evidence, it is clear that biotic linkages throughout FEMs have important consequences for biological integrity and biodiversity. All aquatic organisms move within and among FEM components, but differ in the mode, frequency, distance, and timing of their movements. These movements allow biota to recolonize habitats, avoid inbreeding, escape stressors, locate mates, and acquire resources. Cumulatively, these individual movements connect populations within and among FEMs and contribute to local and regional diversity, resilience to disturbance, and persistence of aquatic species in the face of environmental change. Thus, the biological connections established by movement of biota among streams, wetlands, and downstream waters are critical to the ecological integrity of these systems. Future research will help advance our understanding of the movements that link FEMs and their cumulative effects on downstream waters.

Journal of the American Water Resources Associatio

USGS ecosystem research for the next decade: advancing discovery and application in parks and protected areas through collaboration

Ecosystems within parks and protected areas in the United States and throughout the world are being transformed at an unprecedented rate. Changes associated with natural hazards, greenhouse gas emissions, and increasing demands for water, food, land, energy and mineral resources are placing urgency on sound decision making that will help sustain our Nation’s economic and environmental well-being (Millennium Ecosystem Assessment, 2005). In recognition of the importance of science in making these decisions, the U.S. Geological Survey (USGS) in 2007 identified ecosystem science as one of six science directions included in a comprehensive decadal strategy (USGS 2007). The Ecosystems Mission Area was identified as essential for integrating activity within the USGS and as a key to enhanced integration with other Federal and private sector research and management organizations (Myers at al., 2007). This paper focuses on benefits to parks and protected areas from the USGS Ecosystems Mission Area plan that expanded the scope of the original 2007 science strategy, to identify the Bureau’s work in ecosystem science over the next decade (Williams et al., 2013). The plan describes a framework that encompasses both basic and applied science and allows the USGS to continue to contribute meaningfully to conservation and management issues related to the Nation’s parks and ecological resources. This framework relies on maintaining long-standing, collaborative relationships with partners in both conducting science and applying scientific results. Here we summarize the major components of the USGS Ecosystems Science Strategy, articulating the vision, goals and strategic approaches, then outlining some of the proposed actions that will ultimately prove useful to those managing parks and protected areas. We end with a discussion on the future of ecosystem science for the USGS and how it can be used to evaluate ecosystem change and the associated consequences to management of our Nation’s natural resources.

The George Wright Forum

The U.S. Geological Survey Flagstaff Science Campus—Providing expertise on planetary science, ecology, water resources, geologic processes, and human interactions with the Earth

T he U.S. Geological Survey’s Flagstaff Science Campus is focused on interdisciplinary study of the Earth and solar system, and has the scientific expertise to detect early environmental changes and provide strategies to minimize possible adverse effects on humanity. The Flagstaff Science Campus (FSC) is located in Flagstaff, Arizona, which is situated in the northern part of the State, home to a wide variety of landscapes and natural resources, including (1) young volcanoes in the San Francisco Volcanic Field, (2) the seven ecological life zones of the San Francisco Peaks, (3) the extensive geologic record of the Colorado Plateau and Grand Canyon, (4) the Colorado River and its perennial, ephemeral, and intermittent tributaries, and (5) a multitude of canyons, mountains, arroyos, and plains. More than 200 scientists, technicians, and support staff provide research, monitoring, and technical advancements in planetary geology and mapping, biology and ecology, Earth-based geology, hydrology, and changing climate and landscapes. Scientists at the FSC work in collaboration with multiple State, Federal, Tribal, municipal, and academic partners to address regional, national, and global environmental issues, and provide scientific outreach to the general public.

Arizona

Targeted quantitation of 6ppd-quinone in fish tissue samples with liquid chromatography-tandem mass spectrometry

The tire additive transformation product N -(1,3-dimethylbutyl)- N’ -phenyl- p -phenylenediamine-quinone (6PPD-quinone) has recently garnered global attention due to its acute toxicity to some salmonids, such as coho salmon ( Oncorhynchus kisutch ), and its ubiquitous presence in urban stormwater systems. In the present study, we developed and compared the extraction efficiency of two sample preparation methodologies for quantification of 6PPD-quinone among two fish tissue sample types that included fillet of smallmouth bass ( Micropterus dolomieu ) and whole-body samples of O. kisutch fry subjected to in vivo exposure tests with 6PPD-quinone. The two sample preparation methods tested included an accelerated solvent extraction (ASE) approach and a sonication extraction approach. Both sample preparation methods included identical purification steps for the crude sample extracts with enhanced matrix removal cartridges. The purified sample extracts were subjected to targeted analysis of 6PPD-quinone using ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS). The results showed that extractions made with the reported ASE method demonstrated significantly higher absolute recovery (80–96%) of the extracted internal standard, [ 13 C 6 ]-6PPD-quinone, than sonication-based extractions (74–80%) in both fish tissue sample types. The proposed ASE method shows acceptable limits of quantification (0.37–0.67 ng g −1 ), linearity (R 2 > 0.996), and repeatability (RSD ≤ 9%). This work advances research capabilities for investigations on the toxicokinetic processes of 6PPD-quinone in biological samples.

Environmental Toxicology and Chemistry

Encapsulating model complexity and landscape-scale analyses of state-and-transition simulation models: an application of ecoinformatics and juniper encroachment in sagebrush steppe ecosystems

State-and-transition simulation modeling relies on knowledge of vegetation composition and structure (states) that describe community conditions, mechanistic feedbacks such as fire that can affect vegetation establishment, and ecological processes that drive community conditions as well as the transitions between these states. However, as the need for modeling larger and more complex landscapes increase, a more advanced awareness of computing resources becomes essential. The objectives of this study include identifying challenges of executing state-and-transition simulation models, identifying common bottlenecks of computing resources, developing a workflow and software that enable parallel processing of Monte Carlo simulations, and identifying the advantages and disadvantages of different computing resources. To address these objectives, this study used the ApexRMS® SyncroSim software and embarrassingly parallel tasks of Monte Carlo simulations on a single multicore computer and on distributed computing systems. The results demonstrated that state-and-transition simulation models scale best in distributed computing environments, such as high-throughput and high-performance computing, because these environments disseminate the workloads across many compute nodes, thereby supporting analysis of larger landscapes, higher spatial resolution vegetation products, and more complex models. Using a case study and five different computing environments, the top result (high-throughput computing versus serial computations) indicated an approximate 96.6% decrease of computing time. With a single, multicore compute node (bottom result), the computing time indicated an 81.8% decrease relative to using serial computations. These results provide insight into the tradeoffs of using different computing resources when research necessitates advanced integration of ecoinformatics incorporating large and complicated data inputs and models. - See more at: http://aimspress.com/aimses/ch/reader/view_abstract.aspx?file_no=Environ2015030&flag=1#sthash.p1XKDtF8.dpuf

AIMS Environmental Science

Biogeochemical redox processes and their impact on contaminant dynamics

Life and element cycling on Earth is directly related to electron transfer (or redox) reactions. An understanding of biogeochemical redox processes is crucial for predicting and protecting environmental health and can provide new opportunities for engineered remediation strategies. Energy can be released and stored by means of redox reactions via the oxidation of labile organic carbon or inorganic compounds (electron donors) by microorganisms coupled to the reduction of electron acceptors including humic substances, iron-bearing minerals, transition metals, metalloids, and actinides. Environmental redox processes play key roles in the formation and dissolution of mineral phases. Redox cycling of naturally occurring trace elements and their host minerals often controls the release or sequestration of inorganic contaminants. Redox processes control the chemical speciation, bioavailability, toxicity, and mobility of many major and trace elements including Fe, Mn, C, P, N, S, Cr, Cu, Co, As, Sb, Se, Hg, Tc, and U. Redox-active humic substances and mineral surfaces can catalyze the redox transformation and degradation of organic contaminants. In this review article, we highlight recent advances in our understanding of biogeochemical redox processes and their impact on contaminant fate and transport, including future research needs.

Environmental Science & Technology

Perspectives on challenges and opportunities at the restoration-policy interface in the U.S.A.

As we advance into the United Nations Decade on Ecosystem Restoration, understanding the relationship between science, management, and policy is increasingly important given the paucity of research evaluating the ability of existing policy to address contemporary environmental challenges. Despite their inherent interdependence, restoration ecology as a scientific discipline, ecological restoration as a practice, and the policies driving restoration efforts do not always represent a unified force. Accenting the policies and practices within the United States, we present our perspective on challenges associated with this disunion, including those linked to social dimensions of restoration and limitations associated with existing policy. We provide a review of existing federal policy in the United States and synthesize suggestions that have emerged in the literature to fortify connections between restoration science and policy. We also describe social challenges to meeting restoration goals, including barriers surrounding power dynamics, trust, and communication, as well as divergent incentives, perspectives, and values. We propose potential solutions that exist in transdisciplinary collaboration and knowledge sharing, and evidence-based, balanced decision-making that equally considers varying perspectives. With the understanding that current conservation practices are not enough to mitigate environmental degradation, we focus on streamlining problem-solving strategies to support restoration and face the widespread ecological issues of today.

Restoration Ecology

Lessons learned from wetlands research at the Cottonwood Lake Study Area, Stutsman County, North Dakota, 1967–2021

Depressional wetlands in the Prairie Pothole Region of North America have a long history of investigation owing to their importance in maintaining migratory-bird populations, especially waterfowl. One area of particularly intensive study is the Cottonwood Lake study area in Stutsman County, North Dakota. Studies at the Cottonwood Lake study area began in 1967 and continue through the present (2022). During this period of scientific discovery, meteorological conditions at the Cottonwood Lake study area varied greatly and included one of the most severe droughts of the 20th century and one of the wettest periods in the past 500 years. Persistent wet conditions that began in 1993 have contributed to state changes in many of the study area’s larger wetlands to lake-like conditions, whereas the smaller wetlands returned to seasonally ponded conditions during relatively dry years interspersed within the longer-term wet period. Additionally, some nonwetland areas of the study area developed wetland plant, hydrology, and soil characteristics during the 1993-to-present (2022) wet period. The persistently high stages of water in the larger wetlands since 1993 contributed to a buildup of dissolved solids and increases in salinity with time following an initial decrease in salinity caused by the dilution of dissolved solids within a larger volume of water. During 2021, drought conditions similar to the 1988 to 1992 period may develop if conditions persist. However, meteorological changes during the past 30 years have persisted long enough to be considered a change in climate conditions at the study area and, if such wet conditions continue, would represent a change from conditions that occurred in the past two millennia. During the period of study covered in this report (1967–2021), biotic communities responded in a variety of ways to subtle and marked changes in ponded-water depths, permanence, and salinity among the different wetland types in the study area. This report provides background information on the Cottonwood Lake study area and its context within the Prairie Pothole Region, documents techniques used to quantify environmental conditions and biotic communities, describes major trends that have been observed, presents significant findings as “lessons learned,” discusses recent modeling advances, and highlights key messages to managers. The Wetland Continuum concept was used as a framework to place research findings within an ecological context and to highlight the dynamic nature of prairie-pothole wetland ecosystems.

North Dakota

Marine fog: a review

The objective of this review is to discuss physical processes over a wide range of spatial scales that govern the formation, evolution, and dissipation of marine fog. We consider marine fog as the collective combination of fog over the open sea along with coastal sea fog and coastal land fog. The review includes a history of sea fog research, field programs, forecasting methods, and detection of sea fog via satellite observations where similarity in radiative properties of fog top and the underlying sea induce further complexity. The main thrust of the study is to provide insight into causality of fog including its initiation, maintenance, and destruction. The interplay between the various physical processes behind the several stages of marine fog is among the most challenging aspects of the problem. An effort is made to identify this interplay between processes that include the microphysics of fog formation and maintenance, the influence of large-scale circulation and precipitation/clouds, radiation, turbulence (air-sea interaction), and advection. The environmental impact of marine fog is also addressed. The study concludes with an assessment of our current knowledge of the phenomenon, our principal areas of ignorance, and future lines of research that hold promise for advances in our understanding.

Atmospheric Research

Scientific advances provide opportunities to improve pediatric environmental health

The health consequences of contaminants in the environment, with respect to the health of children and infants, recently have been dramatically brought to public attention by the motion pictures Erin Brockovich and A Civil Action . These productions focused public attention on the potential link between water contaminants and pediatric health, a continuing subject of public concern. As a consequence of the increasing production of new commercial chemicals, many chemicals have appeared in the scientific and public awareness as potential threats to health. These new or novel compounds eventually distribute in the environment and often are termed emerging contaminants . Gitterman and Bearer stated, "Children may serve as unwitting sentinels for society; they are often the youngest exposed to many environmental toxicants and may become the youngest in age to manifest adverse responses." The discipline of pediatric environmental health is still in its adolescence, but it will be increasingly important as new chemicals are generated and as more is learned about the health effects of chemicals already in commerce. Here, we provide an overview of recent advances in biomonitoring and environmental monitoring of environmental contaminants including emerging contaminants. Our purpose in writing this commentary is to make pediatricians aware of the current resources available for learning about pediatric environmental health and of ongoing research initiatives that provide opportunities to improve pediatric environmental health.

Journal of Pediatrics

Quantifying multi-temporal urban development characteristics in Las Vegas from Landsat and ASTER data

Urban development has expanded rapidly in Las Vegas, Nevada of the United States, over the last fifty years. A major environmental change associated with this urbanization trend is the transformation of the landscape from natural cover types to increasingly anthropogenic impervious surface. This research utilizes remote sensing data from both the Landsat and Terra-Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) instruments in conjunction with digital orthophotography to estimate urban extent and its temporal changes by determining sub-pixel impervious surfaces. Percent impervious surface area has shown encouraging agreement with urban land extent and development density. Results indicate that total urban land-use increases approximately 110 percent from 1984 to 2002. Most of the increases are associated with medium-to high-density urban development. Places having significant increases in impervious surfaces are in the northwestern and southeastern parts of Las Vegas. Most high-density urban development, however, appears in central Las Vegas. Impervious surface conditions for 2002 measured from Landsat and ASTER satellite data are compared in terms of their accuracy.

Photogrammetric Engineering and Remote Sensing

Understanding climatic impacts, vulnerabilities, and adaptation in the United States: Building a capacity for assessment

Based on the experience of the U.S. National Assessment, we propose a program of research and analysis to advance capability for assessment of climate impacts, vulnerabilities, and adaptation options. We identify specific priorities for scientific research on the responses of ecological and socioeconomic systems to climate and other stresses; for improvement in the climatic inputs to impact assessments; and for further development of assessment methods to improve their practical utility to decision-makers. Finally, we propose a new institutional model for assessment, based principally on regional efforts that integrate observations, research, data, applications, and assessment on climate and linked environmental-change issues. The proposed program will require effective collaboration between scientists, resource managers, and other stakeholders, all of whose expertise is needed to define and prioritize key regional issues, characterize relevant uncertainties, and assess potential responses. While both scientifically and organizationally challenging, such an integrated program holds the best promise of advancing our capacity to manage resources and the economy adaptively under a changing climate.

Climatic Change

Cyanobacterial harmful algal blooms and U.S. Geological Survey science capabilities

Cyanobacterial harmful algal blooms (CyanoHABs) are increasingly a global concern because CyanoHABs pose a threat to human and aquatic ecosystem health and cause economic damages. Despite advances in scientific understanding of cyanobacteria and associated compounds, many unanswered questions remain about occurrence, environmental triggers for toxicity, and the ability to predict the timing, duration, and toxicity of CyanoHABs. U.S. Geological Survey (USGS) scientists are leading a diverse range of studies to address CyanoHAB issues in water bodies throughout the United States, using a combination of traditional methods and emerging technologies, and in collaboration with numerous partners. By providing practical applications of cutting edge CyanoHAB research, USGS studies have advanced scientific understanding, enabling the development of approaches to help protect ecological and human health.

Open-File Report

Disturbance hydrology: Preparing for an increasingly disturbed future

This special issue is the result of several fruitful conference sessions on disturbance hydrology, which started at the 2013 AGU Fall Meeting in San Francisco and have continued every year since. The stimulating presentations and discussions surrounding those sessions have focused on understanding both the disruption of hydrologic functioning following discrete disturbances, as well as the subsequent recovery or change within the affected watershed system. Whereas some hydrologic disturbances are directly linked to anthropogenic activities, such as resource extraction, the contributions to this special issue focus primarily on those with indirect or less pronounced human involvement, such as bark-beetle infestation, wildfire, and other natural hazards. However, human activities are enhancing the severity and frequency of these seemingly natural disturbances, thereby contributing to acute hydrologic problems and hazards. Major research challenges for our increasingly disturbed planet include the lack of continuous pre- and post-disturbance monitoring, hydrologic impacts that vary spatially and temporally based on environmental and hydroclimatic conditions, and the preponderance of overlapping or compounding disturbance sequences. In addition, a conceptual framework for characterizing commonalities and differences among hydrologic disturbances is still in its infancy. In this introduction to the special issue, we advance the fusion of concepts and terminology from ecology and hydrology to begin filling this gap. We briefly explore some preliminary approaches for comparing different disturbances and their hydrologic impacts, which provides a starting point for further dialogue and research progress.

Water Resources Research

Ecoregions and ecoregionalization: geographical and ecological perspectives

Ecoregions, i.e., areas exhibiting relative homogeneity of ecosystems, are units of analysis that are increasingly important in environmental assessment and management. Ecoregions provide a holistic framework for flexible, comparative analysis of complex environmental problems. Ecoregions mapping has intellectual foundations in both geography and ecology. However, a hallmark of ecoregions mapping is that it is a truly interdisciplinary endeavor that demands the integration of knowledge from a multitude of sciences. Geographers emphasize the role of place, scale, and both natural and social elements when delineating and characterizing regions. Ecologists tend to focus on environmental processes with special attention given to energy flows and nutrient cycling. Integration of disparate knowledge from the many key sciences has been one of the great challenges of ecoregions mapping, and may lie at the heart of the lack of consensus on the “optimal” approach and methods to use in such work. Through a review of the principal existing US ecoregion maps, issues that should be addressed in order to advance the state of the art are identified. Research related to needs, methods, data sources, data delivery, and validation is needed. It is also important that the academic system foster education so that there is an infusion of new expertise in ecoregion mapping and use.

Environmental Management

The impacts of a changing climate to DOD coastal facilities in the tropical Pacific Ocean

The USGS, the National Oceanic and Atmospheric Administration (NOAA), Deltares, and the University of Hawaii (UH) recently completed a study investigating the impact of a changing climate and sea-level rise on Roi-Namur Island on Kwajalein Atoll in the Republic of the Marshall Islands, which is part of the Ronald Reagan Ballistic Missile Defense Test Site (RTS). The isolated location of RTS makes it uniquely suited to support realistic testing of missiles and intercept scenarios with minimal safety and environmental concerns. In addition, this unique location supports research and development for space and missile programs and space reconnaissance and surveillance operations. RTS has been a critical component of the Pacific Range, with the world’s most advanced telemetry, optics, and radar instrumentation used to collect metric and signature data on missiles.

Kwajalein Atoll