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At least 703 records · Page 39Linked to original sources
USGS2014

Complexity versus certainty in understanding species’ declines

Aim Our understanding of and ability to predict species declines is limited, despite decades of study. We sought to expand our understanding of species declines within a regional landscape by testing models using both traditional hypotheses and those derived from a complex adaptive systems approach. Location Our study area was the dry mixed grassland of south-eastern Alberta, Canada, one of the largest remnants of native grassland in North America, and the adjacent grassland in Saskatchewan. Methods We used the breeding birds of the grassland to test the relationship between species declines and a suite of traits associated with decline (such as size, specialization and rarity, as well as distance to edge of a discontinuity, and edge of geographic range) in a stepwise regression with AICc values and bootstrapping via model averaging, followed by a refit procedure to obtain model-averaged parameter estimates. We used both provincial government and Breeding Bird Survey (BBS) classifications of decline. We also modelled degree of decline in the Alberta and Saskatchewan grasslands, which differ in amount of habitat remaining, to test whether severity of decline was explained by the same traits as species decline/not- decline. Results We found that the model for government-defined decline fulfilled government expectations that species' extinction risk is a function of being large, specialized, rare and carnivorous, whereas the model for BBS-defined decline suggested that the biological reality of decline is more complex, requiring the need to explicitly model scale-specific patterns. Furthermore, species decline/not- decline was explained by different traits than those that fit degree of decline, though complex systems- derived traits featured in both sets of models. Main conclusions Traditional approaches to predict species declines (e.g. government processes or IUCN Red Lists), may be too simplistic and may therefore misguide management and conservation. Using complex systems approaches that account for scale-specific patterns and processes have the potential to overcome these limitations.

Diversity and Distributions↗
USGS2019

Diets of endangered silver chub (Macrhybopsis storeriana, Kirtland, 1844) in Lake Erie and implications for recovery

Silver chub ( Macrhybopsis storeriana , Kirtland, 1844) is a native Cyprinid in Lake Erie, one of the Laurentian Great Lakes of North America. It is listed as endangered by the US state of New York and Canada, which has a recovery plan, and as special concern by the state of Michigan. Silver chub faces a potential threat to recovery from control efforts for invasive Grass carp ( Ctenopharyngodon idella , Valenciennes 1844). Among the knowledge gaps for protection and restoration is current diet data. I describe the diet of silver chub from western Lake Erie in 2014, and I compare it to past studies to assess changes in diet through time. Silver chub captured in bottom trawls May–September 2014 were frozen in the field, and stomach contents were preserved in ethanol. Diet taxa were identified to the lowest practical taxonomic unit, then dried and weighed. Frequency of occurrence in silver chub diets was highest for Hexagenia spp. mayflies (79%). Dreissena spp. and Hexagenia spp. were both 41% of the diet by dry weight. Analysis of δ 13 C isotopes identified Hexagenia spp. as the primary source of carbon in silver chub. Compared to past studies, Dreissena spp. have mostly replaced Sphaeriidae and Gastropoda in silver chub diets. There also have been seasonal shifts in relative amounts of shelled organisms and Hexagenia spp. This study and past research suggest a functional link between silver chub and Hexagenia spp. abundance. Maintenance and recovery of silver chub may be dependent on maintaining Hexagenia spp. populations.

Ecology of Freshwater Fish↗
USGS1982

Atlantic continental margin of the United States

The objective of this Decade of North American Geology (D-NAG) volume will be to focus on the Mesozoic and Cenozoic evolution of the U.S. Atlantic continental margin, including the onshore coastal plain, related onshore Triassic-Jurassic rift grabens, and the offshore basins and platforms. Following multiple compressional tectonic episodes between Africa and North America during the Paleozoic Era that formed the Appalachian Mountains, the Mesozoic and Cenozoic Eras were dominated by tensional tectonic processes that separated Africa and North America. Extensional rifting during Triassic and Early Jurassic times resulted in numerous tensional grabens both onshore and offshore, which filled with nonmarine continental red beds, lacustrine deposits, and volcanic flows and debris. The final stage of this breakup between Africa and North America occurred beneath the present outer continental shelf and continental slope during Early or Middle Jurassic time when sea-floor spreading began to form new oceanic crust and lithosophere between the two continents as they drifted apart. Postrift subsidence of the marginal basins continued in response to cooling of the lithosphere and sedimentary loading. Geophysical surveys and oil-exploration drilling along the U.S. Atlantic continental margin during the past 5 years are beginning to answer many questions concerning its deep structure and stratigraphy and how it evolved during the rifting and early sea-floor-spreading stages of the separation of this region from Africa. Earlier geophysical studies of the U.S. continental margin used marine refraction and submarine gravity measurements. Single-channel seismic-reflection, marine magnetic, aeromagnetic, and continuous gravity measurements became available during the 1960s.

DNAG Special Publication↗
USGS2015

Integrated Environmental Modelling: Human decisions, human challenges

Integrated Environmental Modelling (IEM) is an invaluable tool for understanding the complex, dynamic ecosystems that house our natural resources and control our environments. Human behaviour affects the ways in which the science of IEM is assembled and used for meaningful societal applications. In particular, human biases and heuristics reflect adaptation and experiential learning to issues with frequent, sharply distinguished, feedbacks. Unfortunately, human behaviour is not adapted to the more diffusely experienced problems that IEM typically seeks to address. Twelve biases are identified that affect IEM (and science in general). These biases are supported by personal observations and by the findings of behavioural scientists. A process for critical analysis is proposed that addresses some human challenges of IEM and solicits explicit description of (1) represented processes and information, (2) unrepresented processes and information, and (3) accounting for, and cognizance of, potential human biases. Several other suggestions are also made that generally complement maintaining attitudes of watchful humility, open-mindedness, honesty and transparent accountability. These suggestions include (1) creating a new area of study in the behavioural biogeosciences, (2) using structured processes for engaging the modelling and stakeholder communities in IEM, and (3) using ‘red teams’ to increase resilience of IEM constructs and use.

Geological Society of London Special Publications↗
USGS2010

Biocomplexity in mangrove ecosystems

Mangroves are an ecological assemblage of trees and shrubs adapted to grow in intertidal environments along tropical coasts. Despite repeated demonstration of their economic and societal value, more than 50% of the world's mangroves have been destroyed, 35% in the past two decades to aquaculture and coastal development, altered hydrology, sea-level rise, and nutrient overenrichment. Variations in the structure and function of mangrove ecosystems have generally been described solely on the basis of a hierarchical classification of the physical characteristics of the intertidal environment, including climate, geomorphology, topography, and hydrology. Here, we use the concept of emergent properties at multiple levels within a hierarchical framework to review how the interplay between specialized adaptations and extreme trait plasticity that characterizes mangroves and intertidal environments gives rise to the biocomplexity that distinguishes mangrove ecosystems. The traits that allow mangroves to tolerate variable salinity, flooding, and nutrient availability influence ecosystem processes and ultimately the services they provide. We conclude that an integrated research strategy using emergent properties in empirical and theoretical studies provides a holistic approach for understanding and managing mangrove ecosystems.

Annual Review of Marine Science↗
USGS1978

Ponding-test procedure for assessing the infiltration capacity of storm-water basins, Nassau County, New York

A procedure to obtain field data for assessing performance of storm-water basins having high infiltration rates is described. The basin selected is divided into test plots, and treated municipal water from a fire hydrant is ponded to the desired depth so that infiltration rates and flow patterns in the unsaturated zone can be determined by standard methods. The study was made at a storm-water basin excavated in glacial outwash deposits in Nassau County, Long Island, N.Y. in 1971-72. The types of interpretations and evaluations that can be made from test data are described, and applications of the procedure as well as guidelines for developing a similar testing program are given. Observations of special significance were: (1) Infiltration rate of the basin at low water stage is about 1.5 feet per hour but increases with increased water level; (2) flow through the unsaturated zone is essentially vertical; (3) infiltration rate is controlled by a surface stratum --in this case a gravelly, sandy loam; and (4) the position of the water table has little effect on infiltration rate provided it is below the lower boundary of the controlling zone. These observations can be used in evaluating a storm-water basin's suitability for supplemental recharge with treated wastewater, in comparing procedures for increasing a basin's infiltration capacity, or in the design of new storm-water basin systems.

Water Supply Paper↗
USGS2007

DIN retention-transport through four hydrologically connected zones in a headwater catchment of the Upper Mississippi River

Dissolved inorganic nitrogen (DIN) retention-transport through a headwater catchment was synthesized from studies encompassing four distinct hydrologic zones of the Shingobee River Headwaters near the origin of the Mississippi River. The hydrologic zones included: (1) hillslope ground water (ridge to bankside riparian); (2) alluvial riparian ground water; (3) ground water discharged through subchannel sediments (hyporheic zone); and (4) channel surface water. During subsurface hillslope transport through Zone 1, DIN, primarily nitrate, decreased from ∼3 mg-N/l to <0.1 mg-N/l. Ambient seasonal nitrate:chloride ratios in hillslope flow paths indicated both dilution and biotic processing caused nitrate loss. Biologically available organic carbon controlled biotic nitrate retention during hillslope transport. In the alluvial riparian zone (Zone 2) biologically available organic carbon controlled nitrate depletion although processing of both ambient and amended nitrate was faster during the summer than winter. In the hyporheic zone (Zone 3) and stream surface water (Zone 4) DIN retention was primarily controlled by temperature. Perfusion core studies using hyporheic sediment indicated sufficient organic carbon in bed sediments to retain ground water DIN via coupled nitrification-denitrification. Numerical simulations of seasonal hyporheic sediment nitrification-denitrification rates from perfusion cores adequately predicted surface water ammonium but not nitrate when compared to 5 years of monthly field data (1989-93). Mass balance studies in stream surface water indicated proportionally higher summer than winter N retention. Watershed DIN retention was effective during summer under the current land use of intermittently grazed pasture. However, more intensive land use such as row crop agriculture would decrease nitrate retention efficiency and increase loads to surface water. Understanding DIN retention capacity throughout the system, including special channel features such as sloughs, wetlands and floodplains that provide surface water-ground water connectivity, will be required to develop effective nitrate management strategies.

Minnesota↗
USGS2022

USGS tools perform gas source analysis in the field

Field studies of gas hydrate rely on gas sampling and analysis tools to determine the origins and alteration of methane and other hydrocarbons. The conventional strategy for deciphering gas origins has been to collect gas and other related samples in the field then pack, ship, store, and later analyze these discrete samples in a laboratory using instruments that require specialized training and dedicated operators. Two critical drawbacks to the conventional strategy are that: 1) measurements made and analyzed after completing the field program often highlight where data should have been collected; 2) discrete sampling limits the spatial or temporal measurement density, increasing the likelihood of missing small-scale natural features.

Fire in the Ice↗
USGS1968

Salt deposits of the paradox basin, southeast Utah and southwest Colorado

Thick salt deposits are present in the Middle Pennsylvanian Paradox Member of the Hermosa Formation in the Paradox Basin of southeast Utah and southwest Colorado . Data suggest that the original thickness of these deposits was from 5000-6000 feet. Locally, however, these deposits have been subjected to intense deformation and flow, resulting in thicknesses as great as 14,000 feet. Each salt bed is part of a series of partial and complete evaporite cycles which show a lateral and vertical change in facies. Varve counts in the salt beds give an indication of deposition rates of time-equivalent carbonate beds. Black sapropelic shales are interbedded with the salt beds. It appears that the euxinic environment in which the shales were deposited persisted during the deposition of salt . An understanding of the stratigraphy of the salt deposits has made possible a more complete depiction of early tectonic events involving the salt basin . These studies indicate that many of the salt anticlines in the basin were formed along trends of originally thick salt beds, and that upward growth of these anticlines possibly began during the late stages of salt deposition.

Utah, Colorado↗
USGS2008

Delayed genetic effects of habitat fragmentation on the ecologically specialized Florida sand skink ( Plestiodon reynoldsi )

Populations rarely show immediate genetic responses to habitat fragmentation, even in taxa that possess suites of traits known to increase their vulnerability to extinction. Thus conservation geneticists must consider the time scale over which contemporary evolutionary processes operate to accurately portray the effects of habitat isolation. Here, we examine the genetic impacts of fragmentation on the Florida sand skink Plestiodon reynoldsi , a sand swimming lizard that is highly adapted to the upland scrub habitat of central Florida. We studied fragments located on the southern Lake Wales Ridge, where human activity in the latter half of the 20th century has modified the natural patchiness of the landscape. Based on a relaxed molecular clock method, we estimate that sand skinks have persisted in this region for approximately 1.5 million years and that the time frame of human disturbance is equivalent to fewer than 30 skink generations. Using genotypes from eight microsatellite loci, we screened for molecular signatures of this disturbance by assessing congruence between population structure, as inferred from spatially-informed Bayesian assignment tests, and the current geography of scrub fragments. We also tested for potential intrapopulation genetic effects of inbreeding in isolated populations by comparing the average pairwise relatedness of individuals within fragments of different areas and isolation. Our results indicate that although some patches show a higher degree of relatedness than expected under random mating, the genetic effects of recent isolation are not evident in this part of the species’ range. We argue that this result is an artefact of a time-lag in the response to disturbance, and that species-typical demographic features may explain the genetic inertia observed in these populations.

Conservation Genetics↗
USGS2025

The Hawaiian Volcanoes Supersite: Open data for the benefit of science and society

The Hawaiian Volcanoes Supersite was established in 2008 with the goal of making large amounts of volcano monitoring data, especially satellite measurements, freely available at a site of international interest, scientific importance, and impactful natural hazards. The location was chosen because of the long history of volcanological research and innovation on the Island of Hawaiʻi, as well as the need for monitoring, assessing, and mitigating volcanic hazards for the local population. Ground-based data are provided by the U.S. Geological Survey Hawaiian Volcano Observatory, and several national space agencies have contributed thousands of satellite synthetic aperture radar and other data that would have otherwise required special grants or commercial purchase. Since the Hawaiian Volcanoes Supersite was initiated, the vast quantity of open space-based data has resulted in the development of new applications and methodologies, successful responses to volcanic crises, and research that has informed monitoring and hazards mitigation activities. While there remain opportunities for additional coordination among supersite users and for synergistic studies that make use of the full spectrum of available ground- and space-based data, the Hawaiian Volcanoes Supersite has achieved its goals of stimulating basic research to better understand Hawaiian volcanism and aiding in responses to hazardous geologic processes. The effort serves as a model for the benefits of open, low-latency, and comprehensive satellite data applied to disaster risk management and reduction, meeting a vision that has been laid out repeatedly in international agreements and accords.

Hawaii↗
USGS2004

Sidescan sonar imagery and surficial geologic interpretation of the sea floor off Branford, Connecticut

The U.S. Geological Survey (USGS), in cooperation with the National Oceanic and Atmospheric Administration (NOAA) and the Connecticut Department of Environmental Protection (CT DEP), Figure 1 - Map of Study Areahas produced detailed geologic maps of the sea floor in Long Island Sound, a major East Coast estuary surrounded by the most densely populated region of the United States. These studies have built upon cooperative research between the USGS and the State of Connecticut that was initiated in 1982. The current phase of this research program is directed toward studies of sea-floor sediment distribution, processes that control sediment distribution, nearshore environmental concerns, and the relation of benthic community structures to the sea-floor geology. Anthropogenic wastes, toxic chemicals, and changes in land-use patterns resulting from residential, commercial, and recreational development have stressed the environment of the Sound, causing degradation and potential loss of benthic habitats (Koppelman and others, 1976; Long Island Sound Study, 1994). Detailed maps of the sea floor are needed to help evaluate the extent of adverse impacts and to help wisely manage resources in the future. Therefore, in a continuing effort to better understand Long Island Sound, we are constructing and interpreting sidescan sonar mosaics (complete-coverage acoustic images of the sea floor) within specific areas of special interest (Poppe and Polloni, 1998). The mosaic presented herein, which was produced during survey H11043 by NOAA 's Atlantic Hydrographic Branch, covers approximately 41.1 km 2 of the sea floor in north-central Long Island Sound off Branford, Connecticut. Shell bed provides shelter for juvenille skate.The mosaic and its interpretation serve many purposes, including: (1) defining the geological variability of the sea floor, which is one of the primary controls of benthic habitat diversity; (2) improving our understanding of the processes that control the distribution and transport of bottom sediments and the distribution of benthic habitats and associated infaunal community structures; and (3) providing a detailed framework for future research, monitoring, and management activities. The sidescan sonar mosaic also serves as a base map for subsequent sedimentological, geochemical, and biological observations, because precise information on environmental setting is important for selection of sampling sites and for appropriate interpretation of point measurements.

Connecticut↗
USGS1962

Portrayal of drainage and vegetation on topographic maps

Accurate measurements of drainage networks are necessary for studies in many scientific disciplines, especially hydrology. To this end, topographic maps must show accurate classification as well as a consistent pattern of the stream network. A recent study in Georgia has developed two photo-interpretive keys which permit accurate drainage classification during the normal stereo-compilation procedures in map-making. The study was made in the Tired Creek basin in the Coastal Plain, and in the Yellow River basin in the Piedmont Province. In the Tired Creek basin, the perennial stream channels were associated with blackgum swamps which showed as a characteristic pattern on the aerial photographs of the area. Although the areas were classed as evergreen forest on specially-compiled vegetation maps without field checking, the classification was relatively consistent, indicating that the perennial channels could be identified accurately within the basin. In the Yellow River basin origins of perennial flow were found in valleys having concave-upward profiles. Valleys with convex-upward profiles remained ephemeral up to their juncture with a larger stream. Field checks indicated better than 80 percent accuracy in delineating these points of origin of perennial flow through stereoscopic viewing of the aerial photographs of the area. Vegetative difference above and below the origins of perennial flow were to subtle to be readily discerned on the photographs. Errors in classifying vegetation on special maps were attributed mainly to inexperience and to faulty criteria for for classification. Proposals are presented to improve portrayal of both drainage and vegetation on topographic maps. The proposed drainage criteria suggest portrayal of all perennial streams as well as ephemeral drainage below the first branching. The proposed vegetation criteria suggest classification of forest and shrubs, with further sub-division of distinctive patterns of vegetation easily recognized on the aerial photographs.

Open-File Report↗
USGS2010

Status and understanding of groundwater quality in the northern San Joaquin Basin, 2005: California GAMA Priority Basin Project

Groundwater quality in the 2,079 square mile Northern San Joaquin Basin (Northern San Joaquin) study unit was investigated from December 2004 through February 2005 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Priority Basin Project was developed in response to the Groundwater Quality Monitoring Act of 2001 that was passed by the State of California and is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey and the Lawrence Livermore National Laboratory. The Northern San Joaquin study unit was the third study unit to be designed and sampled as part of the Priority Basin Project. Results of the study provide a spatially unbiased assessment of the quality of raw (untreated) groundwater, as well as a statistically consistent basis for comparing water quality throughout California. Samples were collected from 61 wells in parts of Alameda, Amador, Calaveras, Contra Costa, San Joaquin, and Stanislaus Counties; 51 of the wells were selected using a spatially distributed, randomized grid-based approach to provide statistical representation of the study area (grid wells), and 10 of the wells were sampled to increase spatial density and provide additional information for the evaluation of water chemistry in the study unit (understanding/flowpath wells). The primary aquifer systems (hereinafter, primary aquifers) assessed in this study are defined by the depth intervals of the wells in the California Department of Public Health database for each study unit. The quality of groundwater in shallow or deep water-bearing zones may differ from quality of groundwater in the primary aquifers; shallow groundwater may be more vulnerable to contamination from the surface. Two types of assessments were made: (1) status, assessment of the current quality of the groundwater resource; and (2) understanding, identification of the natural and human factors affecting groundwater quality. Relative-concentrations (sample concentrations divided by benchmark concentrations) were used for evaluating groundwater quality for those constituents that have Federal or California regulatory or non-regulatory benchmarks for drinking-water quality. Benchmarks used in this study were either health-based (regulatory and non-regulatory) or aesthetic based (non-regulatory). For inorganic constituents, relative-concentrations were classified as high (equal to or greater than 1.0), indicating relative-concentrations greater than benchmarks; moderate (equal to or greater than 0.5, and less than 1.0); or, low (less than 0.5). For organic and special- interest constituents [1,2,3-trichloropropane (1,2,3-TCP), N-nitrosodimethylamine (NDMA), and perchlorate], relative- concentrations were classified as high (equal to or greater than 1.0); moderate (equal to or greater than 0.1 and less than 1.0); or, low (less than 0.1). Aquifer-scale proportion was used as the primary metric in the status assessment for groundwater quality. High aquifer- scale proportion is defined as the percentage of the primary aquifer with relative-concentrations greater than 1.0; moderate and low aquifer-scale proportions are defined as the percentage of the primary aquifer with moderate and low relative- concentrations, respectively. The methods used to calculate aquifer-scale proportions are based on an equal-area grid; thus, the proportions are areal rather than volumetric. Two statistical approaches - grid-based, which used one value per grid cell, and spatially weighted, which used the full dataset - were used to calculate aquifer-scale proportions for individual constituents and classes of constituents. The spatially weighted estimates of high aquifer-scale proportions were within the 90-percent confidence intervals of the grid-based estimates in all cases. The understanding assessment used statistical correlations between constituent relative-concentrations and

California↗
USGS2014

Brine contamination to aquatic resources from oil and gas development in the Williston Basin, United States

The Williston Basin, which includes parts of Montana, North Dakota, and South Dakota in the United States and the provinces of Manitoba and Saskatchewan in Canada, has been a leading domestic oil and gas producing region for more than one-half a century. Currently, there are renewed efforts to develop oil and gas resources from deep geologic formations, spurred by advances in recovery technologies and economic incentives associated with the price of oil. Domestic oil and gas production has many economic benefits and provides a means for the United States to fulfill a part of domestic energy demands; however, environmental hazards can be associated with this type of energy production in the Williston Basin, particularly to aquatic resources (surface water and shallow groundwater) by extremely saline water, or brine, which is produced with oil and gas. The primary source of concern is the migration of brine from buried reserve pits that were used to store produced water during recovery operations; however, there also are considerable risks of brine release from pipeline failures, poor infrastructure construction, and flow-back water from hydraulic fracturing associated with modern oilfield operations. During 2008, a multidisciplinary (biology, geology, water) team of U.S. Geological Survey researchers was assembled to investigate potential energy production effects in the Williston Basin. Researchers from the U.S. Geological Survey participated in field tours and met with representatives from county, State, tribal, and Federal agencies to identify information needs and focus research objectives. Common questions from agency personnel, especially those from the U.S. Fish and Wildlife Service, were “are the brine plumes (plumes of brine-contaminated groundwater) from abandoned oil wells affecting wetlands on Waterfowl Production Areas and National Wildlife Refuges?” and “are newer wells related to Bakken and Three Forks development different than the older, abandoned wells (in terms of potential for affecting aquatic resources)?” Of special concern were the wetland habitats of the ecologically important Prairie Pothole Region, which overlays a part of the Williston Basin and is recognized for the production of a majority of North America’s migratory waterfowl. On the basis of the concerns raised by on-the-ground land managers, as well as findings from previous research, a comprehensive study was developed with the following goals: summarize existing information pertaining to oil and gas production and aquatic resources in the Williston Basin; assess brine plume migration from new and previously studied sites in the Prairie Pothole Region; perform a regional, spatial evaluation of oil and gas production activities and aquatic resources; assess the potential for brine contamination to wetlands and streams; and hold a decision analysis workshop with key stakeholders to discuss issues pertaining to oil and gas production and environmental effects and to identify information gaps and research needs. This report represents an initial, multidisciplinary evaluation of measured and potential environmental effects associated with oil and gas production in the Williston Basin and Prairie Pothole Region. Throughout this report there are reviews of current knowledge, and discussions relating to data gaps and research needs. On the basis of the information presented, future research needs include: regional geophysical and water-quality assessments to establish baselines for current conditions and estimate the extent of previous brine contamination, investigations into the direct effects of brine to biotic communities, and evaluations to identify the most effective techniques to mitigate brine contamination.

Montana, North Dakota↗
USGS1990

Computational open-channel hydraulics for movable-bed problems

As a major branch of computational hydraulics, notable advances have been made in numerical modeling of unsteady open-channel flow since the beginning of the computer age. According to the broader definition and scope of 'computational hydraulics,' the basic concepts and technology of modeling unsteady open-channel flow have been systematically studied previously. As a natural extension, computational open-channel hydraulics for movable-bed problems are addressed in this paper. The introduction of the multimode method of characteristics (MMOC) has made the modeling of this class of unsteady flows both practical and effective. New modeling techniques are developed, thereby shedding light on several aspects of computational hydraulics. Some special features of movable-bed channel-flow simulation are discussed here in the same order as given by the author in the fixed-bed case.

Conference Paper↗
USGS2005

Coral disease and health workshop: Coral histopathology II, July 12-14, 2005

The health and continued existence of coral reef ecosystems are threatened by an increasing array of environmental and anthropogenic impacts. Coral disease is one of the prominent causes of increased mortality among reefs globally, particularly in the Caribbean. Although over 40 different coral diseases and syndromes have been reported worldwide, only a few etiological agents have been confirmed; most pathogens remain unknown and the dynamics of disease transmission, pathogenicity and mortality are not understood. Causal relationships have been documented for only a few of the coral diseases, while new syndromes continue to emerge. Extensive field observations by coral biologists have provided substantial documentation of a plethora of new pathologies, but our understanding, however, has been limited to descriptions of gross lesions with names reflecting these observations (e.g., black band, white band, dark spot). To determine etiology, we must equip coral diseases scientists with basic biomedical knowledge and specialized training in areas such as histology, cell biology and pathology. Only through combining descriptive science with mechanistic science and employing the synthesis epizootiology provides will we be able to gain insight into causation and become equipped to handle the pending crisis. One of the critical challenges faced by coral disease researchers is to establish a framework to systematically study coral pathologies drawing from the field of diagnostic medicine and pathology and using generally accepted nomenclature. This process began in April 2004, with a workshop titled Coral Disease and Health Workshop: Developing Diagnostic Criteria co-convened by the Coral Disease and Health Consortium (CDHC), a working group organized under the auspices of the U.S. Coral Reef Task Force, and the International Registry for Coral Pathology (IRCP). The workshop was hosted by the U.S. Geological Survey, National Wildlife Health Center (NWHC) in Madison, Wisconsin and was focused on gross morphology and disease signs observed in the field. A resounding recommendation from the histopathologists participating in the workshop was the urgent need to develop diagnostic criteria that are suitable to move from gross observations to morphological diagnoses based on evaluation of microscopic anatomy. As a continuation of building the foundation and framework for coral disease diagnostics, the CDHC convened the Coral Disease and Health Workshop: Coral Histopathology II in Charleston, South Carolina, July 11-14, 2005. The workshop was hosted by the Department of Pathology and Laboratory Medicine at the Medical University of South Carolina, Charleston, SC which provided expertise, facilities and equipment in support of the workshop. All of the histological slides and related photographs used in the discussions were prepared and supplied by the IRCP. This workshop brought together 15 experts in veterinary and medical pathology and coral biology from national and international research institutes and government laboratories. The mission was to devise a standardized approach to examining microscopic anatomy and pathology of corals and a standardized nomenclature to facilitate accurate descriptions of the microscopic morphology of corals and enhance communication among specialists investigating causes of coral death. 2 The participants of this workshop deliberated for 3 days to refine the nomenclature for gross and microscopic anatomy of corals and systematically described microscopic changes associated with selected coral diseases. The findings and recommendations from the deliberations will be submitted to the research community for peer review. The standardized nomenclature and descriptions produced at this workshop will ultimately be made available to the scientific community through a variety of media including the World Wide Web. An exciting highlight of this meeting was provided by Professor Robert Ogilvie (MUSC Department of Cell Biology and Anatomy) when he introduced participants to a new digital technology that is revolutionizing histology and histopathology in the medical field. The Virtual Slide technology creates digital images of histological tissue sections by computer scanning actual slides in high definition and storing the images for retrieval and viewing. Virtual slides now allow any investigator with access to a computer and the web to view, search, annotate and comment on the same tissue sections in real time. Medical and veterinary slide libraries across the country are being converted into virtual slides to enhance biomedical education, research and diagnosis. The coral health and disease researchers at this workshop deem virtual slides as a significant way to increase capabilities in coral histology and a means for pathology consultations on coral disease cases on a global scale.

NOAA Technical Memorandum↗
USGS1998

Use of multi-offset borehole-radar reflection method in fractured crystalline bedrock at Mirror Lake, Grafton County, New Hampshire

Multi-offset, single-hole, borehole-radar reflection surveys were conducted at the U.S. Geological Survey Fractured Rock Research Site at Mirror Lake, in Grafton County, New Hampshire. The study was conducted to evaluate the benefits of applying multi-offset seismic processing techniques to borehole-radar reflection surveys in fractured rock. The multi-offset reflection surveys were conducted in conjunction with a saline tracer- injection experiment. During injection, a sodium chloride (NaCl) solution was continuously pumped into a hydraulically conductive zone that was isolated by specially constructed, reusable, PVC straddle packers suspended from PVC casing. Eight common-offset borehole reflection profiles were collected within the PVC-sleeved portion of the borehole before and during the tracer injection. The offset between the transmitter and receiver antennas ranged from 6.4 to 9.9 m (meters). The common offset data were filtered, sorted into common distance-point (CDP) gathers, normal move-out (NMO) corrected, and stacked to produce a zero-offset borehole CDP profile. Comparison of the common-offset and CDP profiles indicates that multi-offset data acquisition and CDP processing; (1) increases the resolution of reflectors near the borehole, (2) decreases the effects of direct wave coupling, antenna ringing, and system noise, and (3) improves the clarity of difference images used to identify the effects of saline tracer on reflections from transmissive fractures.

New Hampshire↗