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At least 703 records · Page 39Linked to original sources

Comparative population structure of cavity-nesting sea ducks

A growing collection of mtDNA genetic information from waterfowl species across North America suggests that larger-bodied cavity-nesting species exhibit greater levels of population differentiation than smaller-bodied congeners. Although little is known about nest-cavity availability for these species, one hypothesis to explain differences in population structure is reduced dispersal tendency of larger-bodied cavity-nesting species due to limited abundance of large cavities. To investigate this hypothesis, we examined population structure of three cavity-nesting waterfowl species distributed across much of North America: Barrow's Goldeneye ( Bucephala islandica ), Common Goldeneye ( B. clangula ), and Bufflehead ( B. albeola ). We compared patterns of population structure using both variation in mtDNA control-region sequences and band-recovery data for the same species and geographic regions. Results were highly congruent between data types, showing structured population patterns for Barrow's and Common Goldeneye but not for Bufflehead. Consistent with our prediction, the smallest cavity-nesting species, the Bufflehead, exhibited the lowest level of population differentiation due to increased dispersal and gene flow. Results provide evidence for discrete Old and New World populations of Common Goldeneye and for differentiation of regional groups of both goldeneye species in Alaska, the Pacific Northwest, and the eastern coast of North America. Results presented here will aid management objectives that require an understanding of population delineation and migratory connectivity between breeding and wintering areas. Comparative studies such as this one highlight factors that may drive patterns of genetic diversity and population trends.

The Auk↗

Using stable isotopes to determine seabird trophic relationships

1. The stable isotopes of nitrogen (δ 15 N ) and carbon (δ 13 C) were analysed in 22 species of marine birds from coastal waters of the northeast Pacific Ocean. Analyses confirm that stable nitrogen isotopes can predict seabird trophic positions. 2. Based on δ 15 N analyses, seabird trophic-level inferences generally agree with those of conventional dietary studies, but suggest that lower trophic-level organisms are more important to several seabirds than was recognized previously. 3. Stable-carbon isotope analysis may be a good indicator of inshore vs. offshore feeding preference. 4. In general, stable-isotope analysis to determine trophic level offers many advantages over conventional dietary approaches since trophic inferences are based on time-integrated estimates of assimilated and not just ingested foods, and isotopic abundance represents a continuous variable that is amenable to statistical analysis.

Alaska, British Columbia↗

Status and conservation of lampreys in California

Abstract .—Lampreys are among the least studied group of fishes in California. At least seven species inhabit freshwater habitats within the state, including the Kern brook lamprey Lampetra hubbsi , a California endemic. Four species are micropredators on fish, Pacific lamprey Entosphenus tridentatus (formerly L. tridentata ), river lamprey L. ayresii , Klamath lamprey E. similis (formerly L. similis ) and Goose Lake lamprey Entosphenus sp. The remaining three species are nonfeeding as adults and are presumed to have many populations isolated from one another. Pacific lamprey and river lamprey are anadromous and may have increased diversity through multiple runs. A systematic analysis of the limited information available indicates that, with the possible exception of the Pit-Klamath brook lamprey E. lethophagus (formerly L. lethophaga ), all species are either declining, in low numbers, or in isolated populations. Causes of the declines are multiple and species-specific, but in general, alteration of watersheds by humans, resulting in increased siltation, temperatures and pollution, as well as other habitat changes are the principal causes. Protecting lampreys has the benefit of protecting stream ecosystems throughout the state because of the wide historic presence of lampreys and because ammocoetes require clean, cool water and relatively complex habitat, including stable backwaters.

California↗

Densovirus associated with sea-star wasting disease and mass mortality

Populations of at least 20 asteroid species on the Northeast Pacific Coast have recently experienced an extensive outbreak of sea-star (asteroid) wasting disease (SSWD). The disease leads to behavioral changes, lesions, loss of turgor, limb autotomy, and death characterized by rapid degradation (&ldquo;melting&rdquo;). Here, we present evidence from experimental challenge studies and field observations that link the mass mortalities to a densovirus (Parvoviridae). Virus-sized material (i.e., <0.2 &mu;m) from symptomatic tissues that was inoculated into asymptomatic asteroids consistently resulted in SSWD signs whereas animals receiving heat-killed (i.e., control) virus-sized inoculum remained asymptomatic. Viral metagenomic investigations revealed the sea star-associated densovirus (SSaDV) as the most likely candidate virus associated with tissues from symptomatic asteroids. Quantification of SSaDV during transmission trials indicated that progression of SSWD paralleled increased SSaDV load. In field surveys, SSaDV loads were more abundant in symptomatic than in asymptomatic asteroids. SSaDV could be detected in plankton, sediments and in nonasteroid echinoderms, providing a possible mechanism for viral spread. SSaDV was detected in museum specimens of asteroids from 1942, suggesting that it has been present on the North American Pacific Coast for at least 72 y. SSaDV is therefore the most promising candidate disease agent responsible for asteroid mass mortality.

Proceedings of the National Academy of Sciences of↗

Regional variation in drivers of connectivity for two frog species (Rana pretiosa and R. luteiventris) from the U.S. Pacific Northwest

Comparative landscape genetics has uncovered high levels of variability in which landscape factors affect connectivity among species and regions. However, the relative importance of species traits versus environmental variation for predicting landscape patterns of connectivity is unresolved. We provide evidence from a landscape genetics study of two sister taxa of frogs, the Oregon spotted frog ( Rana pretiosa ) and the Columbia spotted frog ( Rana luteiventris ) in Oregon and Idaho, USA. Rana pretiosa is relatively more dependent on moisture for dispersal than R. luteiventris , so if species traits influence connectivity, we predicted that connectivity among R. pretiosa populations would be more positively associated with moisture than R. luteiventris . However, if environmental differences are important drivers of gene flow, we predicted that connectivity would be more positively related to moisture in arid regions. We tested these predictions using eight microsatellite loci and gravity models in two R. pretiosa regions and four R. luteiventris regions ( n = 1,168 frogs). In R. pretiosa , but not R. luteiventris , connectivity was positively related to mean annual precipitation, supporting our first prediction. In contrast, connectivity was not more positively related to moisture in more arid regions. Various temperature metrics were important predictors for both species and in all regions, but the directionality of their effects varied. Therefore, the pattern of variation in drivers of connectivity was consistent with predictions based on species traits rather than on environmental variation.

Molecular Ecology↗

Interstitial water studies on small core samples, Deep Sea Drilling Project, Leg 8

Leg 8 sites are dominated by siliceous-calcareous biogenic oozes having depositional rates of 0.1 to 1.5 cm/1000 years. Conservative constituents of pore fluids showed, as have cores from other pelagic areas of the Pacific, insignificant or marginally significant changes with depth and location. However, in Sites 70 and 71, calcium, magnesium and strontium showed major shifts in concentration with depth. These changes appear to be related to recrystallization phenomena in skeletal debris of nannoplankton and to the relative accumulation rate of the sediments. The chemical anomalies increase relatively smoothly with depth, demonstrating the effectiveness of vertical diffusional communication, and apparent lack of bulk fluid movement, as noted in Leg 7 and other sites.

Initial reports of the Deep Sea Drilling Project↗

The destructive 1946 Unimak near-field tsunami: New evidence for a submarine slide source from reprocessed marine geophysical data

The M w 8.6 earthquake in 1946 off the Pacific shore of Unimak Island at the end of the Alaska Peninsula generated a far-field tsunami that crossed the Pacific to Antarctica. Its tsunami magnitude, 9.3, is comparable to the 9.1 magnitude of the 2011 Tohoku tsunami. On Unimak Island's Pacific shore, a runup of 42 m destroyed the lighthouse at Scotch Cap. Elsewhere, localized tsunamis with such high runups have been interpreted as caused by large submarine landslides. However, previous to this study, no landslide large enough to generate this runup was found in the area that is limited by the time interval between earthquake shaking and tsunami inundation at Scotch Cap. Reworking of a seismic reflection transect and colocated multibeam bathymetric surveys reveal a landslide block that may explain the 1946 high runup. It is seaward of Scotch Cap on the midslope terrace and within the time-limited area.

Geophysical Research Letters↗

Living with uncertainty: Using multi-model large ensembles to assess emperor penguin extinction risk for the IUCN Red List

Improved methods for identifying species at risk are needed to strengthen climate change vulnerability assessments, as current estimates indicate that up to one million species face extinction due to environmental changes. Integrating multiple sources of uncertainty enhances the robustness of Red List of Threatened Species assessments, providing a more comprehensive understanding of species’ risks. We present a comprehensive framework that incorporates uncertainties, including measurement error, structural uncertainty, natural variability, future climate emissions scenario, and extreme events of sea ice loss, to evaluate the extinction risk of the emperor penguin ( Aptenodytes forsteri ), currently classified as Near-Threatened. We apply three ecological models, one bioclimatic and two metapopulation models, combined with a multi-model large ensemble (MMLE) of climate projections from general circulation models, to conduct a Red List evaluation at both global, regional and colony levels. Our results show that emperor penguins could be classified under a range of Red List categories depending on the ecological model, Intergovernmental Panel on Climate Change (IPCC) climate emissions scenario, and extreme event frequency. Under Criterion A, global classifications vary from Vulnerable to Critically Endangered. Severe declines are projected in the Indian and East Pacific sectors, Dronning Maud Land and the Amundsen-Bellingshausen Sea, with Criterion E indicating that 24% to 100% of colonies meet Endangered status thresholds, depending on huddling thresholds and ecological models. This study represents the first application of an MMLE coupled with an ecological ensemble approach to project climate change impacts on a species, capturing a comprehensive range of uncertainties and offering a framework for improving forecasting and decision-making under climate change.

Biological Conservation↗

An evaluation of restoration efforts in fishless lakes stocked with exotic trout

Detrimental effects of introduced fishes on native amphibian populations have prompted removal of introduced cutthroat (Oncorhynchus clarki), rainbow (Oncorhynchus mykiss), and brook trout (Salvelinus fontinalis) from naturally fishless lakes at Mt. Rainier National Park, Washington (U.S.A.). Using paleolimnological indicators (diatoms, invertebrates, and sediment characteristics) in eight 480-year-old sediment cores from eight lakes, we (1) derived estimates of baseline environmental conditions and natural variation, (2) assessed the effects of stocking naturally fishless lakes, and (3) determined whether lakes returned to predisturbance conditions after fish removal (restoration). Diatom floras were relatively stable between 315 and 90 years before present in all lakes; we used this time period to define lake-specific "baseline" conditions. Dissimilarity analyses of diatoms revealed sustained, dramatic changes in diatom floras that occurred approximately 80 years ago (when fish were introduced) in four of five stocked lakes, whereas the diatom floras in two unstocked lakes had not changed significantly in the last 315 years. Diatoms were not preserved in an eighth lake. State changes also occurred in two lakes over 200 years before European settlement of the Pacific Northwest. Preserved invertebrate densities fluctuated dramatically over time in all cores, providing a poor reference for assessing the effects of fishes. Nevertheless, fish-invertebrate interactions have been demonstrated in other paleolimnological studies and may be useful for lower-elevation or more productive lakes. Because diatom communities have not returned to predisturbance assemblages in restored lakes, even 20-30 years after fish removal, we conclude that Mt. Rainier lakes were not successfully restored by the removal of fishes.

Conservation Biology↗

Piscine reovirus, but not Jaundice Syndrome, was transmissible to Chinook Salmon, Oncorhynchus tshawytscha (Walbaum), Sockeye Salmon, Oncorhynchus nerka (Walbaum), and Atlantic Salmon, Salmo salar L.

A Jaundice Syndrome occurs sporadically among sea-pen-farmed Chinook Salmon in British Columbia, the westernmost province of Canada. Affected salmon are easily identified by a distinctive yellow discolouration of the abdominal and periorbital regions. Through traditional diagnostics, no bacterial or viral agents were cultured from tissues of jaundiced Chinook Salmon; however, piscine reovirus (PRV) was identified via RT-rPCR in all 10 affected fish sampled. By histopathology, Jaundice Syndrome is an acute to peracute systemic disease, and the time from first clinical signs to death is likely <48 h; renal tubular epithelial cell necrosis is the most consistent lesion. In an infectivity trial, Chinook Salmon, Sockeye Salmon and Atlantic Salmon, intraperitoneally inoculated with a PRV-positive organ homogenate from jaundiced Chinook Salmon, developed no gross or microscopic evidence of jaundice despite persistence of PRV for the 5-month holding period. The results from this study demonstrate that the Jaundice Syndrome was not transmissible by injection of material from infected fish and that PRV was not the sole aetiological factor for the condition. Additionally, these findings showed the Pacific coast strain of PRV, while transmissible, was of low pathogenicity for Atlantic Salmon, Chinook Salmon and Sockeye Salmon.

British Columbia↗

Interacting effects of latitude, mass, age, and sex on winter survival of Surf Scoters ( Melanitta perspicillata ): Implications for differential migration

We quantified variation in winter survival of Surf Scoters ( Melanitta perspicillata (L., 1758)) across nearly 30&deg; of latitude on the Pacific coast of North America to evaluate potential effects on winter distributions, including observed differential distributions of age and sex classes. We monitored fates of 297 radio-marked Surf Scoters at three study sites: (1) near the northern periphery of their wintering range in southeast Alaska, USA, (2) the range core in British Columbia, Canada, and (3) the southern periphery in Baja California, Mexico. We detected 34 mortalities and determined that survival averaged lower at the range peripheries than in the range core, was lower during mid-winter than during late winter at all sites, and was positively correlated with body mass within locations. Although neither age nor sex class had direct effects, mass effects led to differential survival patterns among classes. When simultaneously incorporating these interacting influences, adult males of mean mass for their location had highest survival at the northern range periphery in Alaska, whereas adult females and juveniles had higher survival at the range core and the southern periphery. Our observations help to explain patterns of differential migration and distribution reported for this species and highlight seasonal periods (mid-winter) and locations (range peripheries) of elevated levels of mortality for demographically important age&ndash;sex classes (adult females).

Baja California, southeast Alaska, Strait of Georg↗

Rediscovery and uncertain future of high-elevation Haleakala carabid beetles (Coleoptera)

Recent biotic surveys in subalpine shrubland on Haleakalā Volcano, Maui, Hawai'i, have resulted in rediscovery of several species of carabid beetles previously known only from their nineteenth-century type specimens. Blackburnia lenta (Sharp), described from specimens collected just below Haleakalā summit in 1894, was found at lower elevational sites ranging from 2,400 to 2,750 m. Mecyclothorax rusticus Sharp, last seen in 1896, and M. nubicola (Blackburn), collected only in 1878, were also rediscovered in that vicinity. Recent collections of B. lenta contradict the U.S. Fish and Wildlife Service's previous classification of this species as one likely to be extinct. Nevertheless, B. lenta's known distribution comprises only 145 ha within an elevational zone that is bounded above and below by unicolonial populations of the invasive alien Argentine ant, Linepithema humile (Mayr). The known recent collections of M. rusticus and M. nubicola also occurred outside the distributional range of the Argentine ant. Mature eggs held in the lateral oviducts of B. lenta females averaged 1.4x the volume of the largest eggs previously reported among 13 species of Blackburnia. We hypothesize that the giant eggs of B. lenta result from selective forces favoring large, well-nourished developing and hatched first-instar larvae, consistent with a patchy distribution of suitable microhabitat and prey in the subalpine Haleakalā landscape. The specialized life history of B. lenta, and coincidence of distributional limits of the three rediscovered carabid species with range limits of the Argentine ant populations suggest that all would be jeopardized by future distributional expansion of Argentine ant. These intersecting phenomena compel us to conclude that B. lenta, M. nubicola, and M. nubicola are appropriate candidates for I.U.C.N. threatened species designation, pending further studies of their geographic ranges and historical trends in abundance.

Hawaii↗

Evidence for foraging -site fidelity and individual foraging behavior of pelagic cormorants rearing chicks in the Gulf of Alaska

The Pelagic Cormorant ( Phalacrocorax pelagicus ) is the most widespread cormorant in the North Pacific, but little is known about its foraging and diving behavior. However, knowledge of seabirds' foraging behavior is important to understanding their function in the marine environment. In 2006, using GPS dataloggers, we studied the foraging behavior of 14 male Pelagic Cormorants rearing chicks on Middleton Island, Alaska. For foraging, the birds had high fidelity to a small area 8 km north of the colony. Within that area, the cormorants' diving activity was of two distinct kinds—near-surface dives (1–6 m) and benthic dives (28–33 m). Individuals were consistent in the depths of their dives, either mostly shallow or mostly deep. Few showed no depth preference. Dive duration, time at maximum depth, and pauses at the water surface between consecutive dives were shorter for shallow dives than for deep dives. The cormorants made dives of both types throughout the day, but the frequency of deep dives increased toward evening. Maximum foraging range was 9 km; maximum total distance traveled per trip was 43.4 km. Trip durations ranged from 0.3 to 7.7 hr. Maximum depth of a dive was 42.2 m, and duration of dives ranged from 4 to 120 sec. We found that Pelagic Cormorants at Middleton Island were faithful to one particular foraging area and individuals dived in distinct patterns. Distinct, specialized foraging behavior may be advantageous in reducing intra- and interspecific competition but may also render the species vulnerable to changing environmental conditions.

Alaska↗

Geology and paleontology of Canal Zone and adjoining parts of Panama: Description of Tertiary mollusks (additions to gastropods, scaphopods, pelecypods Nuculidae to Malleidae)

Chapter E adds 112 described species and subspecies (a few briefly described) to the some 440 covered in preceding chapters : 27 additional gastropods, 18 scaphopods, and 67 pelecypods in 10 families. It is estimated that about 125 species are to be added in chapter F, the final chapter. The Arcidae is by far the largest family in the pelecypods so far studied : 30 species in six genera. The genus Anadara is the largest in that family : 25 species, representing the subgenera Hawaiarca? , Rasia, Tosarca, Grandiarca, Potiarca , and Cunearca . Potiarca , based on a living western Pacific species, is adopted for many American species heretofore assigned to Cunearca . Eighteen of the 27 additional gastropods were found at a new locality in the late Eocene part of the Gatuncillo formation. They 'are assigned to 16 genera, 14 of which are not represented at other Gatuncillo localities. The genera include Faunus, Turnpanotonos , and Bezaneonia , which are rare in America, and the rare endemic American genus Harrisianella . The marine member of the Bohio (?) formation is now assigned to the late Eocene, instead of late Eocene or early Oligocene—the only change in age assignment. Eocene affinities are especially strengthened by the presence of Samanoetia samanensis and Volvariella? , if indeed the unnamed species represents that genus, as seems likely. Both the marine member of the Bohio( ?) and the late Oligocene part of the Bohio contain early small species of Anadara , subgenus Rasia . The fossils from the moderately deep-water facies of the late Oligocene Caimito formation include the earliest hexagonal Dentalium of the subgenus Dentalium s.s., from the American mainland, and a widespread and abundant species of the essentially deep-water subgenus Fissidentalium . Anadara chiriquiensis chiriquiensis , a relatively small form of the subgenus Grandiarca that is widely distributed in the Miocene Caribbean province, occurs in the Culebra formation. For the most part it indicates brackish water. Among the fossils from the La Boca formation proper, Cyphoma aff. C. intermedia is the earliest representative of an endemic American genus, and Isognomon mimeticus , a remarkable, narrowly mytiliform species is the type of the new subgenus Mimonion . Both the Culebra and La Boca, both of early Miocene age, contain predecessors of Gatun species. As in other chapters, the largest number of species is from the middle Miocene Gatun formation: 50 species. Bailya crossata is the first Tertiary species of the genus from the Caribbean region, and the earliest now known. A bizarre, incomplete gastropod is described as xancid?, genus?. The Gatun contains 13 of the 24 species of Anadara and half of the 12 species of the subgenus Rasia of that genus. In consideration of two battered and worn specimens of a large form of the subgenus Grandiarca , identified as Anadara grandis patricia? , the similar Tertiary forms in the Caribbean region are reviewed and divided into a brackish-water group and a marine group. The Gatun fauna now totals some 330 species.

Professional Paper↗

Raccoons of North and Middle America

The raccoons, genus Procyon, colloquially known as &ldquo;coons,&rdquo; belong to the carnivorous family Procyonidae, which also includes the American genera Nasua, Nasuella, Bassaricyon, and Potos, and the Old World genera Ailurus and Ailuropoda of the subfamily Ailurinae. The members of the Procyon lotor group (subgenus Procyon), with a transcontinental range from southern Canada to Panama, except in parts of the Rocky Mountain region, and including those inhabiting several distant islands, are among the most familiar and characteristic of North American mammals. This group is not known to occur south of Panama. It is overlapped in the Isthmian region by the so-called crab-eating raccoons of the subgenus Euprocyon, which range from that northern limit as far south as Paraguay in South America. The raccoons have been greatly reduced in numbers or have disappeared in many formerly wooded sections, owing to clearing and intensive human occupation. Despite adverse conditions, however, they have maintained themselves in many places with remarkable tenacity. Trapping for other fur bearers may have reduced the northern fringe to some extent, but the general range of the group has been little diminished. At the present time raccoons reach their northern limit in regular occurrence on Vancouver Island, B. C. The continental forms of the subgenus Procyon constitute a compact assemblage of closely allied geographic races all assignable to Procyon lotor. Complete intergradation is evident in numerous cases and the relative value and combination of characters presented indicate such close relationships that it can safely be assumed where lack of material leaves gaps in the known ranges. In the present revision of the raccoons are treated the North American continental species as far as the eastern border of Panama and the species on outlying islands along both the Atlantic and the Pacific coasts. Thirty species and subspccics are recognized. Twenty-nine of these are assigned to the subgenus Procyon and one to the subgenus Euproc yon. The revision is based mainly on a study of raccoon material in the collection of Biological Surveys, Fish and Wildlife Service, and in other collections in the United States National Museum. These and 358 specimens borrowed from other museums make a total of 1,337 examined. The assemblage included the types or topotypes of most of the known species and subspecies. For the loan of specimens the writer is especially indebted to Dr. Thomas Barbour, Museum of Comparative Zoology, Cambridge, Mass. ; the late Dr. Joseph Grinnell, Museum of Vertebrate Zoology, Berkeley, Calif.; Dr. W. H. Osgood, Chicago Natural History Museum, Chicago, Ill.; Dr. H. E. Anthony, American Museum of Natural History, New York City; Dr. R. M. Anderson, National Museum of Canada, Ottawa, Canada; the late Oldfield Thomas of the British Museum (Natural History) ; Francis Kermode, Provincial Museum, Vancouver, British Columbia; Dr. L. R. Dice, Museum of Zoology, University of Michigan, Ann Arbor, Mich.; and the late D. R. Dickey, Pasadena, Calif. Grateful acknowledgment is also due to Percy Shufeldt, La Cueva, N. Vex., for the generous donation of specimens collected by him in Campeche, Mexico. Notes on his examination of specimens in the British Museum have been kindly furnished by Dr. Remington Kellogg, United States National Museum, Washington, D. C. Stanley P. Young, Fish and Wildlife Service, Washington, D. C., generously supplied the photograph for the frontispiece. Dr. E. W. Nelson became keenly interested in the raccoons, as shown by his work on those inhabiting the Florida Keys (1930a).' During the same time and in the following year new subspecies were described jointly by Nelson and the writer in preparation for a revision of the group; but other projects claimed attention and our collaboration could not be carried beyond this preliminary stage

North American Fauna↗

Reduction in overwinter body condition and size of Pacific sand lance has implications for piscivorous predators during marine heatwaves

Acute anomalous ocean warming events, including marine heatwaves (MHWs), have significant effects on reproduction and survival of piscivorous seabirds. Additionally, MHWs have negative effects on seabird fish prey, exacerbating these consequences and resulting in population implications for seabirds. We evaluated the relative body condition of Pacific sand lance Ammodytes personatus , an important seabird forage species, in Haro Strait, a highly productive region of southern British Columbia, Canada. We compared body condition and length of fish cohorts that experienced the 2016 MHW year (MHW cohorts) with fish hatched during 3 subsequent post MHW years (2017-2019). Age-0 MHW cohorts had a seasonal decline in body condition in age-0 fish from 100% in the summer to 81% in the winter, while age-1 fish showed a decline from summer-fall highs of 93.5% to wintertime low of 79.5%. In comparison, post MHW cohorts had a winter body condition that was 2-4 times higher than their MHW cohorts. Similar to previous studies in Alaska during the MHW, age-1 fish failed to grow and reach the typical size that distinguishes them from age-0 fish. Poor sand lance condition and growth in winter may explain the ramifications of a warming ocean for top predators, including seabirds and Pacific salmon, which depend on these prey fish in Haro Strait. Our results support the idea that Haro Strait, which is influenced by estuarine circulation resulting in cooler temperatures than surrounding areas, serves as a climate refugium for sand lance populations in summer and provides buffering capacity to ocean climate warming events.

Marine Ecology Progress Series↗

Preliminary assessment of channel stability and bed-material transport in the Tillamook Bay tributaries and Nehalem River basin, northwestern Oregon

This report summarizes a preliminary study of bed-material transport, vertical and lateral channel changes, and existing datasets for the Tillamook (drainage area 156 square kilometers [km 2 ]), Trask (451 km 2 ), Wilson (500 km 2 ), Kilchis (169 km 2 ), Miami (94 km 2 ), and Nehalem (2,207 km 2 ) Rivers along the northwestern Oregon coast. This study, conducted in coopera-tion with the U.S. Army Corps of Engineers and Oregon Department of State Lands to inform permitting decisions regarding instream gravel mining, revealed that: Study areas along the six rivers can be divided into reaches based on tidal influence and topography. The fluvial (nontidal or dominated by riverine processes) reaches vary in length (2.4-9.3 kilometer [km]), gradient (0.0011-0.0075 meter of elevation change per meter of channel length [m/m]), and bed-material composition (a mixture of alluvium and intermittent bedrock outcrops to predominately alluvium). In fluvial reaches, unit bar area (square meter of bar area per meter of channel length [m 2 /m]) as mapped from 2009 photographs ranged from 7.1 m 2 /m on the Tillamook River to 27.9 m 2 /m on the Miami River. In tidal reaches, all six rivers flow over alluvial deposits, but have varying gradients (0.0001-0.0013 m/m) and lengths affected by tide (1.3-24.6 km). The Miami River has the steepest and shortest tidal reach and the Nehalem River has the flattest and longest tidal reach. Bars in the tidal reaches are generally composed of sand and mud. Unit bar area was greatest in the Tidal Nehalem Reach, where extensive mud flats flank the lower channel. Background factors such as valley and channel confinement, basin geology, channel slope, and tidal extent control the spatial variation in the accumulation and texture of bed material. Presently, the Upper Fluvial Wilson and Miami Reaches and Fluvial Nehalem Reach have the greatest abundance of gravel bars, likely owing to local bed-material sources in combination with decreasing channel gradient and valley confinement. Natural and human-caused disturbances such as mass movements, logging, fire, channel modifications for navigation and flood control, and gravel mining also have varying effects on channel condition, bed-material transport, and distribution and area of bars throughout the study areas and over time. Existing datasets include at least 16 and 18 sets of aerial and orthophotographs that were taken of the study areas in the Tillamook Bay tributary basins and Nehalem River basin, respectively, from 1939 to 2011. These photographs are available for future assessments of long-term changes in channel condition, bar area, and vegetation establishment patterns. High resolution Light Detection And Ranging (LiDAR) surveys acquired in 2007-2009 could support future quantitative analyses of channel morphology and bed-material transport in all study areas. A review of deposited and mined gravel volumes reported for instream gravel mining sites shows that bed-material deposition tends to rebuild mined bar surfaces in most years. Mean annual deposition volumes on individual bars exceeded 3,000 cubic meters (m 3 ) on Donaldson Bar on the Wilson River, Dill Bar on the Kilchis River, and Plant and Winslow Bars on the Nehalem River. Cumulative reported volumes of bed-material deposition were greatest at Donaldson and Dill Bars, totaling over 25,000 m 3 per site from 2004 to 2011. Within this period, reported cumulative mined volumes were greatest for the Donaldson, Plant, and Winslow Bars, ranging from 24,470 to 33,940 m 3 . Analysis of historical stage-streamflow data collected by the U.S. Geological Survey on the Wilson River near Tillamook (14301500) and Nehalem River near Foss (14301000) shows that these rivers have episodically aggraded and incised, mostly following high flow events, but they do not exhibit systematic, long-term trends in bed elevation. Multiple cross sections show that channels near bridge crossings in all six study areas are dynamic with many subject to incision and aggradation as well as lateral shifts in thalweg position and bank deposition and erosion. In fluvial reaches, unit bar area declined a net 5.3-83.6 percent from 1939 to 2009. The documented reduction in bar area may be attributable to several factors, including vegetation establishment and stabilization of formerly active bar surfaces, lateral channel changes and resulting alterations in sediment deposition and erosion patterns, and streamflow and/or tide differences between photographs. Other factors that may be associated with the observed reduction in bar area but not assessed in this reconnaissance level study include changes in the sediment and hydrology regimes of these rivers over the analysis period. In tidal reaches, unit bar area increased on the Tillamook and Nehalem Rivers (98.0 and 14.7 percent, respectively), but declined a net 24.2 to 83.1 percent in the other four tidal reaches. Net increases in bar area in the Tidal Tillamook and Nehalem Reaches were possibly attributable to tidal differences between the photographs as well as sediment deposition behind log booms and pile structures on the Tillamook River between 1939 and 1967. The armoring ratio (ratio of the median grain sizes of a bar's surface and subsurface layers) was 1.6 at Lower Waldron Bar on the Miami River, tentatively indicating a relative balance between transport capacity and sediment supply at this location. Armoring ratios, however, ranged from 2.4 to 5.5 at sites on the Trask, Wilson, Kilchis, and Nehalem Rivers; these coarse armor layers probably reflect limited bed-material supply at these sites. On the basis of mapping results, measured armoring ratios, and channel cross section surveys, preliminary conclusions are that the fluvial reaches on the Tillamook, Trask, Kilchis, and Nehalem Rivers are currently sediment supply-limited in terms of bed material - that is, the transport capacity of the channel generally exceeds the supply of bed material. The relation between transport capacity and sediment is more ambiguous for the fluvial reaches on the Wilson and Miami Rivers, but transport-limited conditions are likely for at least parts of these reaches. Some of these reaches have possibly evolved from sediment supply-limited to transport-limited over the last several decades in response to changing basin and climate conditions. Because of exceedingly low gradients, all the tidal reaches are transport-limited. Bed material in these reaches, however, is primarily sand and finer grain-size material and probably transported as suspended load from upstream reaches. These reaches will be most susceptible to watershed conditions affecting the supply and transport of fine sediment. Compared to basins on the southwestern Oregon coast, such as the Chetco and Rogue River basins, these six basins likely transport overall less gravel bed material. Although tentative in the absence of actual transport measurements, this conclusion is supported by the much lower area and frequency of bars and longer tidal reaches along all the northcoast rivers examined in this study. Previous studies suggest that the expansive and largely unvegetated bars visible in the 1939 photographs are primarily associated with voluminous sedimentation starting soon after the first Tillamook Burn fire in 1933. However, USGS studies of temporal bar trends in other Oregon coastal rivers unaffected by the Tillamook Burn show similar declines in bar area over approximately the same analysis period. In the Umpqua and Chetco River basins, historical declines in bar area are associated with long-term decreases in flood magnitude. Other factors may include changes in the type and volume of large wood and riparian vegetation. Further characterization of hydrology patterns in these basins and possible linkages with climate factors related to flood peaks, such as the Pacific Decadal Oscillation, could support inferences of expected future changes in vegetation establishment and channel planform and profile. More detailed investigations of bed-material transport rates and channel morphology would support assessments of lateral and vertical channel condition and longitudinal trends in bed material. Such assessments would be most practical for the fluvial study areas on the Wilson, Kilchis, Miami, and Nehalem Rivers and relevant to several ongoing management and ecological issues pertaining to sand and gravel transport. Tidal reaches may also be logical subjects for indepth analysis where studies would be more relevant to the deposition and transport of fine sediment (and associated channel and riparian conditions and processes) rather than coarse bed material.

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The Geologic Story of the Uinta Mountains

The opening of the West after the Civil War greatly stimulated early geologic exploration west of the 100th Meridian. One of the areas first studied, the Uinta Mountains region, gained wide attention as a result of the explorations of three Territorial Surveys, one headed by John Wesley Powell, one by Clarence King, and one by Ferdinand V. Hayden. Completion of the Union Pacific Railroad across southern Wyoming 100 years ago, in 1869, materially assisted geologic exploration, and the railheads at Green River and Rock Springs greatly simplified the outfitting of expeditions into the mountains. The overlap of the Powell, King, and Hayden surveys in the Uinta Mountains led to efforts that were less concerted than competitive and not without acrimony. Many parts of the area were seen by all three parties at almost the same time. Duplication was inevitable, of course, but all three surveys contributed vast quantities of new knowledge to the storehouse of geology, and many now-basic concepts arose from their observations. Powell's area of interest extended mainly southward from the Uinta Mountains to the Grand Canyon, including the boundless plateaus and canyons of southern Utah and northern Arizona. King's survey extended eastward from the High Sierra in California to Cheyenne, Wyoming, and encompassed a swath of country more than 100 miles wide. Hayden's explorations covered an immense region of mountains and basins from Yellowstone Park in Wyoming southeast throughout most of Colorado. Powell first entered the Uinta Mountains in the fall of 1868, having traveled north around the east end of the range from the White River country to Green River, Wyoming, then south over a circuitous route to Flaming Gorge and Browns Park, and finally back to the White River, where he spent the winter. In 1869, after reexamining much of the area visited the previous season, Powell embarked on his famous 'first boat trip' down the Green and Colorado Rivers. This trip was more exploratory than scientific; his second, more scientific trip was made 2 years later. Powell revisited the Uinta Mountains in 1874 and 1875 to complete the studies begun 6 years earlier. His classic 'Report on the Geology of the Eastern Portion of the Uinta Mountains and a Region of Country Adjacent Thereto' was published in 1876. King's survey?officially 'The United States Geological Exploration of the Fortieth Parallel'?is better known simply as the '40th Parallel Survey.' King began working eastward from California in 1867. The Uinta Mountains region, however, was mapped by S. F. Emmons, under the supervision of King, in the summers of 1869 and 1871. Emmons' work was monumental, and although he emphasized in his letter of transmittal to King the exploratory nature of the work?as the formal title of the report indicates?his maps, descriptions, and conclusions reflect a comprehensive understanding of the country and its rocks. The 40th Parallel report contains the best, most complete early descriptions of the Uinta Mountains. It, indeed, is a treasurechest of information and a landmark contribution to the emerging science of geology. Hayden visited the Uinta Mountains in 1870, descending the valley of Henrys Fork to Flaming Gorge in the fall after having earlier examined the higher part of the range to the west. Most of Hayden's observations were cursory, and he repeatedly expressed regret at having insufficient time for more detailed studies. In reference to the area between Clay Basin and Browns Park, he remarked (Hayden, 1871, p. 67) somewhat dryly that 'the geology of this portion of the Uinta range is very complicated and interesting. To have solved the problem to my entire satisfaction would have required a week or two.' Eighty-odd years later I spent several months there?looking at the same rocks. Powell was perhaps more creative?more intuitive?than either King or Hayden, and his breadth of interest in the fields of geology, physiography, ethnology, an

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