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USGS2019

Sampling designs for landscape-level eDNA monitoring programs using three-level occurrence models

Resource managers conduct landscape-level monitoring using environmental DNA (eDNA). These managers must contend with imperfect detection in samples and sub-samples (i.e., molecular analyses). This imperfect detection impacts their ability to both detect species and estimate occurrence. Although occurrence (synonymously occupancy) models can estimate these probabilities, most models and guidance for their application do not consider three levels. We studied this with three aims. First, we examined the number of samples required to detect a species at a site given imperfect detection. Second, we examined the ability of a three-level occurrence model to recover parameter estimates. Third, we examined the number of samples required to reliably recover parameter estimates. We found detecting eDNA in 1 sample at a site required 12 samples under most condition, but detection eDNA in situations that might be expected when looking for species at very low abundance required >50 samples. We found our occupancy model generally recovered known parameters unless detection and sample occurrence probabilities were <0.3. In these situations, >50 samples per site and 8 molecular replicates were required. Conversely, estimating and comparing occurrence and detection probabilities for species with moderate to high abundance may require 4 molecular replicates and 20-30 samples per site. More broadly, our findings illustrate the importance of study design, sample sizes, and molecular replicates for eDNA-based research, monitoring, and management.

Integrated Environmental Assessment and Management↗

USGS2020

Black bear movement and food conditioning in an exurban landscape

Conflicts between humans and wildlife have become increasingly important challenges for resource managers along the urban‐wildland interface. Food conditioning (i.e., reliance by an animal on anthropogenic foods) of American black bears (Ursus americanus ) is related to conflict behavior (i.e., being bold or aggressive toward humans, consuming human food or garbage, causing property damage) and often occurs in communities adjacent to Great Smoky Mountains National Park (GRSM or Park), USA. The goal of our study was to evaluate black bear space use in GRSM and in exurban areas on surrounding private lands and to identify factors associated with food conditioning and conflict behavior. We radio‐collared 53 bears (29 males, 24 females) from 2015 to 2017 to compare space use characteristics and used carbon isotopic signatures (δ13C) from bear hair to assess food conditioning. We then performed an integrated step selection function (iSSF) analysis to characterize and compare movement and resource use as related to food conditioning. Based on the stable isotope analyses, 24 bears were classified as food conditioned (FC; 16 males and 8 females) and 37 were not food conditioned (NFC; 14 males and 23 females). Annual 95% kernel density estimate (KDE) home ranges and 50% KDE core area estimates of female and male bears did not differ by level of food conditioning (i.e., mean δ13C), but 95% and 50% home ranges of FC females were smaller than NFC females when data from 2015, a year of food scarcity and abnormally large home ranges, were excluded. The mean proportion of exurban development (e.g., roads, buildings, openings) within 95% KDE and 50% KDE home ranges of females increased with mean δ13C (i.e., greater food conditioning). The iSSF models indicated that FC bears were more likely to use forest openings associated with higher levels of development than NFC bears. We used those models to demonstrate how landscape modifications can reduce bear use of exurban areas, particularly for NFC bears. Our stable isotope, movement, and resource use data indicate that conflict behaviors displayed by many bears within GRSM were learned in areas outside Park boundaries. © 2020 The Wildlife Society.

Tennessee, North Carolina↗

USGS2022

Movement of white‐tailed deer in contrasting landscapes influences management of chronic wasting disease

Chronic wasting disease (CWD) continues to expand in distribution and prevalence across North America. Upon detection, either for the first time in a novel area or in a region with an existing outbreak, wildlife management agencies are tasked with responding to mitigate the disease. This response often entails creation or modification of a management zone with modified rules and regulations that support an agency's disease management plan. To guide the process of creating an appropriately sized CWD management zone, assuming that wild deer movements are a major risk factor for disease spread, we used data from global positioning system (GPS)-collared white-tailed deer ( Odocoileus virginianus ) in southeastern Minnesota and southcentral Pennsylvania, USA, between 2018 and 2021 to estimate long-distance movements associated with dispersal and migratory behaviors. These contrasting study areas with active CWD outbreaks permitted an evaluation of deer movement dynamics in different parts of their range. We quantified the proportion, distribution, timing, and orientation of dispersing and migratory deer. We observed 21% of female and 58% of male yearlings disperse from their apparent natal home range in Minnesota, while in Pennsylvania 4% of female and 68% of male yearlings dispersed. We also documented 20% of females and 6% of males migrated between seasonal home ranges in Minnesota, while in Pennsylvania no females and 5% of males migrated. The average distance deer dispersed or migrated in Minnesota was 20 km and 11 km, respectively, while in Pennsylvania male deer dispersed only about 4 km. Both sexes in Minnesota tended to disperse in a consistent, westerly direction; however, there was no directional preference observed for migratory deer or for dispersing deer in Pennsylvania. We found differences between natal and adult home range size for both sexes in Minnesota but not for males in Pennsylvania. Our results identify the considerable variability in dispersal and migration dynamics of white-tailed deer in disparate landscapes, which is important to agencies managing CWD. We summarize the distribution of these movements and suggest agencies use this information to help make decisions about optimal management zone size. We suggest the development of formalized assessments of the tradeoffs associated with optimizing decisions about creation of CWD management zones across white-tailed deer populations that exhibit variation in dispersal behavior and suggest careful evaluation to avoid using an arbitrary size or shape to create disease management zones.

Minnesota, Pennsylvania↗

USGS2017

Evidence for regional nitrogen stress on chlorophyll a in lakes across large landscape and climate gradients

Nitrogen (N) and phosphorus (P) commonly stimulate phytoplankton production in lakes, but recent observations from lakes from an agricultural region suggest that nitrate may have a subsidy‐stress effect on chlorophyll a (Chl a ). It is unclear, however, how generalizable this effect might be. Here, we analyzed a large water quality dataset of 2385 lakes spanning 60 regions across 17 states in the Northeastern and Midwestern U.S. to determine if N subsidy‐stress effects on phytoplankton are common and to identify regional landscape characteristics promoting N stress effects in lakes. We used a Bayesian hierarchical modeling framework to test our hypothesis that Chl a –total N (TN) threshold relationships would be common across the central agricultural region of the U.S. (“the Corn Belt”), where lake N and P concentrations are high. Data aggregated across all regions indicated that high TN concentrations had a negative effect on Chl a in lakes with concurrent high total P. This large‐scale pattern was driven by relationships within only a subset of regions, however. Eight regions were identified as having Chl a –TN threshold relationships, but only two of these regions located within the Corn Belt clearly demonstrated this subsidy‐stress relationship. N stress effects were not consistent across other intense agricultural regions, as we hypothesized. These findings suggest that interactions among regional land use and land cover, climate, and hydrogeology may be important in determining the synergistic conditions leading to N subsidy‐stress effects on lake phytoplankton.

Limnology and Oceanography↗

USGS2025

Discharge and nutrients interact to determine trophic structure in a wetland: Evidence from a landscape-scale manipulation

Identifying drivers of consumer biomass patterns and community structure is complex for managed freshwater ecosystems that are sensitive to nutrients and drought. In the Florida Everglades, flow restoration is expected to reintroduce discharge across an expansive wetland, yet most research on consumers has focused on water depth and dry disturbances. Low-velocity flow can mediate nutrient availability for basal food resources, but its scaled-up effects on consumer communities remain largely untested. We quantified consumer responses to a landscape-scale flow manipulation that created discharge variability along a 2.5-km path of interconnected shallow sloughs. Over 4 yr, we repeatedly sampled macroinvertebrates, small fishes, and large predatory fishes (standard length > 8 cm) in 26 sloughs—some along a flow path experiencing pulsed water releases and others in two non-flowing reference areas. We tested the effects of antecedent discharge on consumer biomass while accounting for local nutrient concentrations (total phosphorus). Discharge increased biomass across all consumer groups, particularly in oligotrophic sloughs. Conversely, eutrophic sloughs demonstrated stronger top-down effects on small fishes and macroinvertebrates, with discharge primarily benefiting large predatory fishes. Nutrient gradients preferentially increased large fishes and caused macroinvertebrate community shifts favoring herbivorous and possibly predation-resistant taxa. Structural equation modeling similarly indicated bottom-up support from discharge but stronger top-down control in nutrient-rich sloughs. These findings demonstrate that discharge and total phosphorus interactively produce distinct consumer biomass patterns. Flow restoration in oligotrophic Everglades sloughs is hypothesized to enhance aquatic consumer biomass across trophic levels, revealing an ecological benefit to slow-flowing ecosystems not previously recognized.

Florida↗

USGS2021

Flow dynamics influence fish recruitment in hydrologically connected river-reservoir landscapes

Hydrologic processes are often important determinants of successful recruitment of native fishes. However, water management practices can result in abnormal changes in daily and seasonal hydrology patterns. Rarely has fish recruitment across river–reservoir landscapes been considered in relation to flow management, despite the direct relationship between reservoir water management and the resulting upstream and downstream hydrology. We evaluated the relationships between lotic and lentic hydrology and recruitment of two native broadcast-spawning fishes, Freshwater Drum Aplodinotus grunniens and Gizzard Shad Dorosoma cepedianum . Four seasonal periods for each species were identified that related to the species’ spawning biology, from which we derived our remaining hydrology variables. Annual hydrology variables were also considered in our analysis. We developed regression models in conjunction with a model-selection procedure for each species and habitat type based on the catch-curve residuals from fish populations in hydrologically connected river–reservoir systems in the Ozark Highland and Ouachita Mountain ecoregions, USA. Our results indicated that recruitment of reservoir Freshwater Drum was negatively correlated to annual reservoir retention time. In lotic habitats, Freshwater Drum recruitment was positively correlated with prespawn discharge conditions and negatively correlated with annual flow variability. Similarly, riverine Gizzard Shad recruitment was positively correlated to the frequency of high-flow pulses during the spawning period. Our results indicate that releasing reservoir water to best mimic relatively natural flow patterns may benefit some broadcast-spawning species that occupy both lentic and downstream lotic environments, especially during the spring. This information, combined with future efforts on additional spawning guilds, will provide a foundation for developing holistic river–reservoir water-allocation plans.

Missouri, Oklahoma↗

USGS2020

Landscape matters: Predicting the biogeochemical effects of permafrost thaw on aquatic networks with a state factor approach

Permafrost thaw has been widely observed to alter the biogeochemistry of recipient aquatic ecosystems. However, research from various regions has shown considerable variation in effect. In this paper, we propose a state factor approach to predict the release and transport of materials from permafrost through aquatic networks. Inspired by Hans Jenny's seminal description of soil‐forming factors, and based on the growing body of research on the subject, we propose that a series of state factors—including relief, ice content, permafrost extent, and parent material—will constrain and direct the biogeochemical effect of thaw over time. We explore state‐factor‐driven variation in thaw response using a series of case studies from diverse regions of the permafrost‐affected north, and also describe unique scaling considerations related to the mobile and integrative nature of aquatic networks. While our cross‐system review found coherent responses to thaw for some biogeochemical constituents, such as nutrients, others, such as dissolved organics and particles, were much more variable in their response. We suggest that targeted, hypothesis‐driven investigation of the effects of state factor variation will bolster our ability to predict the biogeochemical effects of thaw across diverse and rapidly changing northern landscapes.

Permafrost and Periglacial Processes↗

USGS2023

Cisco population characteristics in Wisconsin lakes in relation to lake- and landscape-level factors

Objective Declines in Cisco Coregonus artedi populations in some inland lakes have prompted assessments of Cisco occurrence and extirpation risk in relation to various stressors to identify refuge lakes and factors that promote Cisco persistence. However, most previous assessments have focused on presence–absence of Cisco rather than examining how population characteristics, such as relative abundance or growth, might change in relation to lake- and landscape-level environmental factors. Consequently, our specific objectives were to identify important environmental factors explaining variation in Cisco relative abundance and growth and to determine whether population metrics describing size and age distributions were related to relative abundance in Wisconsin inland lakes. Methods Cisco were collected from 48 inland Wisconsin lakes during 2011–2015 using vertical monofilament gill nets and population-specific relative abundance estimates (catch per unit effort [CPUE]) were quantified as the number of individuals per gill-net night. Sagittal otoliths were removed from a subsample of Cisco for age estimation and growth was indexed as mean total length (TL; mm) at age 2. Length and age data were used to develop a suite of metrics describing size and age distributions of each population. Random forest models were used to evaluate relationships between 10 biologically relevant predictor variables representing variation in physical, climatic, catchment, and limnological characteristics and Cisco CPUE and growth. Pearson correlations were used to determine whether population characteristics were related to CPUE. Result Cisco populations exhibited large variation in relative abundance, growth, and size and age distributions. Best-fit random forest models explained approximately 25% of the variation in Cisco CPUE and 46% of the variation in growth. Growing degree-days and variables associated with availability, quality, and quantity of suitable oxythermal conditions were identified as important predictors of both Cisco CPUE and growth; CPUE was also identified as an important predictor of growth. Mean TL and mean TL at age 2 were negatively related to Cisco CPUE, whereas mean age, number of age-classes present, and maximum observed age were positively related to CPUE. Conclusion Our results suggest that maintenance of suitable oxythermal habitat conditions may be critical to conserving abundant Cisco populations. Our assessment also provides insights on how Cisco populations may respond to environmental and anthropogenic stressors, which could aid ongoing and future conservation and management efforts in Wisconsin and elsewhere.

Wisconsin↗

USGS2026

Landscape composition and proximity to water affect American badger occupancy in shortgrass prairies

Land use change in prairie ecosystems is pervasive. Prairie obligate species may be affected by these changes, though many carnivore-specific examples are unknown. We used 3 years (2018–2020) of camera-trap ( n = 381) data from Kansas, USA, to assess multiscale effects of landscape composition on habitat use by American badgers (badger, Taxidea taxus ). We predicted that site occupancy and colonization would be positively associated with the amount of prairie surrounding sites. We also predicted that site occupancy and colonization would be negatively related to amounts of agriculture and the number of wind towers surrounding sites. Badgers were insensitive to amounts of prairie surrounding sites and likely to occupy and colonize sites surrounded by row-crop agriculture. Badgers were also less likely to occupy sites farther from permanent water. Badgers may be exploiting agricultural areas because of increased prey densities or suitable burrowing substrates. Moreover, our study highlights the importance of water resources to badgers in arid regions.

Kansas↗

USGS2013

Influence of landscape characteristics on retention of expandable radiocollars on young ungulates

One tool used for wildlife management is the deployment of radiocollars to gain knowledge of animal populations. Understanding the influence of individual factors (e.g., species, collar characteristics) and landscape characteristics (e.g., forested cover, shrubs, and fencing) on retention of expandable radiocollars for ungulates is important for obtaining empirical data on factors influencing ecology of young-of-the-year ungulates. During 2001–2009, we captured and radiocollared 198 white-tailed deer (Odocoileus virginianus) fawns, 142 pronghorn (Antilocapra americana) fawns, and 73 mule deer (O. hemionus) fawns in South Dakota, Minnesota, and California, USA. We documented 72 (36.4%), 8 (5.6%), and 7 (9.6%) premature (2, SE = 0.1, n = 75) compared with areas where fawns shed collars (x = 3.24 km/km 2 , SE = 0.1, n = 56) prior to 270 days. Researchers of fawns should consider that radiocollars can be shed prematurely when estimating desired sample size to yield a suitable strength of inference about some natural process of interest.

California;Minnesota;South Dakota↗

USGS2015

Monitoring landscape-level distribution and migration Phenology of Raptors using a volunteer camera-trap network

Conservation of animal migratory movements is among the most important issues in wildlife management. To address this need for landscape-scale monitoring of raptor populations, we developed a novel, baited photographic observation network termed the “Appalachian Eagle Monitoring Program” (AEMP). During winter months of 2008–2012, we partnered with professional and citizen scientists in 11 states in the United States to collect approximately 2.5 million images. To our knowledge, this represents the largest such camera-trap effort to date. Analyses of data collected in 2011 and 2012 revealed complex, often species-specific, spatial and temporal patterns in winter raptor movement behavior as well as spatial and temporal resource partitioning between raptor species. Although programmatic advances in data analysis and involvement are needed, the continued growth of the program has the potential to provide a long-term, cost-effective, range-wide monitoring tool for avian and terrestrial scavengers during the winter season. Perhaps most importantly, by relying heavily on citizen scientists, AEMP has the potential to improve long-term interest and support for raptor conservation and serve as a model for raptor conservation programs in other portions of the world.

Wildlife Society Bulletin↗

USGS2016

Evaluating a strategy to deliver vaccine to white-tailed deer at a landscape level

Effective delivery of vaccines and other pharmaceuticals to wildlife populations is needed when zoonotic diseases pose a risk to public health and natural resources or have considerable economic consequences. The objective of our study was to develop a bait-distribution strategy for potential delivery of oral bovine tuberculosis (bTB) vaccine to white-tailed deer ( Odocoileus virginianus ) where deer are reservoirs for the disease. During 17 February and 2 March 2011, we created a grid of experimental bait stations ( n  = 64) on Sandhill Wildlife Management Area, Wisconsin, USA, to assess station densities needed to attract and deliver placebo baits to free-ranging white-tailed deer and look for associations among deer density, number of bait stations per deer, and bait consumption. We placed 1 L of commercially available alfalfa cubes at bait stations 652 m apart, and monitored stations with motion-activated cameras for 5 days to document visitation and consumption by deer and nontarget species. Deer discovered 38% of all bait stations within 37 hr, on average (SE = 3.91 hr), and consumed variable amounts of bait at each station. Deer were documented in 94% of all photographs of wildlife at bait stations. We found no correlation between bait consumption and deer density or the number of bait stations per deer. We provide the first information on use of baits by free-ranging deer and nontarget wildlife to eventually vaccinate deer against bTB at a landscape level. The results of this study can further the development of strategies in delivery of pharmaceuticals to free-ranging white-tailed deer.

Wildlife Society Bulletin↗

USGS1995

Planning long-term vegetation studies at landscape scales

Long-term ecological research is receiving more attention now than ever before. Two recent books, Long-term Studies in Ecology: Approaches and Alternatives , edited by Gene Likens (1989), and Long-term Ecological Research: An International Perspective , edited by Paul Risser (1991), prompt the question, “Why are these books so thin?” Except for data from paleoecological, retrospective studies (see below), there are exceptionally few long-term data sets in terrestrial ecology (Strayer et al. 1986; Tilman 1989; this volume). In a sample of 749 papers published in Ecology , Tilman (1989) found that only 1.7% of the studies lasted at least five field seasons. Only one chapter in each of the review books dealt specifically with expanding both the temporal and the spatial scales of ecological research (Berkowitz et al. 1989; Magnuson et al. 1991). Judging by the growing number of landscape-scale long-term studies, however, such as the Long-Term Ecological Research (LTER) Program (Callahan 1991), the U.S. Environmental Protection Agency’s Environmental Monitoring and Assessment Program (EMAP; Palmer et al. 1991), the U.S. Army’s Land Condition-Trend Analysis (LCTA) Program (Diersing et al. 1992), and various agencies’ global change research programs (CEES 1993), there is a growing interest to expand ecological research both temporally and spatially.

Book chapter↗

USGS2021

Permafrost thaw in northern peatlands: Rapid changes in ecosystem and landscape functions

Peatlands within the northern permafrost region cover approximately 2 million km 2 and are characterized by organic soils that can be several meters thick, and a fine-scale mosaic of permafrost and non-permafrost landforms interspersed by shallow ponds and lakes. Ongoing permafrost thaw is transforming these peatlands, causing abrupt changes to their morphology, hydrology, ecology, and biogeochemistry. In this review we show how changes to individual peatlands depend on both their Holocene developmental history and their location within current permafrost zones. Permafrost thaw in peatlands often leads to land surface collapse between 0.5 and 5 m, the so-called thermokarst. Thermokarst in peatlands can lead to the development of ice-wedge troughs, waterlogged thermokarst bogs and fens, and the initiation, expansion, and drainage of thermokarst lakes. Permafrost thaw in peatlands can thus completely alter vegetation composition and shift patterns of landscape inundation and hydrological connectivity. These changes in turn have implications for magnitude and timing of runoff, downstream water quality, habitat suitability for birds and larger mammals, traditional land-use, and the exchange of greenhouse gases with the atmosphere. Ongoing permafrost thaw is largely irreversible at relevant human time-scales, and peatland thermokarst has been accelerating over the last few decades. Complete permafrost loss is expected this century for peatlands in relatively warmer permafrost zones, and all peatlands in the northern permafrost region will be profoundly transformed by permafrost thaw.

Book chapter↗

USGS2015

Approaches to modeling landscape-scale drought-induced forest mortality

Drought stress is an important cause of tree mortality in forests, and drought-induced disturbance events are projected to become more common in the future due to climate change. Landscape Disturbance and Succession Models (LDSM) are becoming widely used to project climate change impacts on forests, including potential interactions with natural and anthropogenic disturbances, and to explore the efficacy of alternative management actions to mitigate negative consequences of global changes on forests and ecosystem services. Recent studies incorporating drought-mortality effects into LDSMs have projected significant potential changes in forest composition and carbon storage, largely due to differential impacts of drought on tree species and interactions with other disturbance agents. In this chapter, we review how drought affects forest ecosystems and the different ways drought effects have been modeled (both spatially and aspatially) in the past. Building on those efforts, we describe several approaches to modeling drought effects in LDSMs, discuss advantages and shortcomings of each, and include two case studies for illustration. The first approach features the use of empirically derived relationships between measures of drought and the loss of tree biomass to drought-induced mortality. The second uses deterministic rules of species mortality for given drought events to project changes in species composition and forest distribution. A third approach is more mechanistic, simulating growth reductions and death caused by water stress. Because modeling of drought effects in LDSMs is still in its infancy, and because drought is expected to play an increasingly important role in forest health, further development of modeling drought-forest dynamics is urgently needed.

Book chapter↗

USGS1990

Spatial variation in basic chemistry of streams draining a volcanic landscape on Costa Rica's Caribbean slope

Spatial variability in selected chemical, physical and biological parameters was examined in waters draining relatively pristine tropical forests spanning elevations from 35 to 2600 meters above sea level in a volcanic landscape on Costa Rica's Caribbean slope. Waters were sampled within three different vegetative life zones and two transition zones. Water temperatures ranged from 24-25 ??C in streams draining lower elevations (35-250 m) in tropical wet forest, to 10 ??C in a crater lake at 2600 m in montane forest. Ambient phosphorus levels (60-300 ??g SRP L-1; 66-405 ??g TP L-1) were high at sites within six pristine drainages at elevations between 35-350 m, while other undisturbed streams within and above this range in elevation were low (typically <30.0 ??g SRP L-1). High ambient phosphorus levels within a given stream were not diagnostic of riparian swamp forest. Phosphorus levels (but not nitrate) were highly correlated with conductivity, Cl, Na, Ca, Mg and SO4. Results indicate two major stream types: 1) phosphorus-poor streams characterized by low levels of dissolved solids reflecting local weathering processes; and 2) phosphorus-rich streams characterized by relatively high Cl, SO4, Na, Mg, Ca and other dissolved solids, reflecting dissolution of basaltic rock at distant sources and/or input of volcanic brines. Phosphorus-poor streams were located within the entire elevation range, while phosphorus-rich streams were predominately located at the terminus of Pleistocene lava flows at low elevations. Results indicate that deep groundwater inputs, rich in phosphorus and other dissolved solids, surface from basaltic aquifers at breaks in landform along faults and/or where the foothills of the central mountain range merge with the coastal plain. ?? 1990 Kluwer Academic Publishers.

Hydrobiologia↗

USGS2003

Avian fruit preferences across a Puerto Rican forested landscape: Pattern consistency and implications for seed removal

Avian fruit consumption may ensure plant reproductive success when frugivores show consistent preference patterns and effectively remove and disperse seeds. In this study we examined avian fruit preferences and their seed-removal services at five study sites in north-central Puerto Rico. At each site, we documented the diet of seven common fruit-eating avian species from February to September 1998. Using foraging observations and area-based estimates of fruit abundance, we examined preference patterns of birds. We found that 7 out of 68 fleshy-fruited plant species were responsible for most of the fruit diet of birds. Seventeen plant species were preferred and four of them were repeatedly preferred across several study sites and times by at least one avian species. Preferred plant species comprised a small percentage of fleshy fruits at each site (<15% in four out of five study sites), but showed extended phenology patterns. The quantity of seeds removed by frugivore species was not strictly related to preferences. Some frugivores showing no preference could effectively remove more seeds from plants at some locations than species exhibiting constancy in their patterns of preference. Only two frugivores, Euphonia musica and Vireo altiloquous, removed most of the seeds of plants for which they exhibited repeated preference across the landscape. Preference patterns, particularly those exhibiting consistency in space and time for plant species having prolonged fruiting periods, may have important mechanistic consequences for the persistence, succession, and regeneration of tropical plant communities.

Oecologia↗

USGS2019

Bridging the gap between salmon spawner abundance and marine nutrient assimilation by juvenile salmon: Seasonal cycles and landscape effects at the watershed scale

Anadromous Pacific salmon are semelparous, and resource subsidies from spawning adults (marine-derived nutrients, or MDN) benefit juvenile salmonids rearing in freshwater. However, it remains unclear how MDN assimilation relates to spawner abundance within a watershed. To address this, we examined seasonal, watershed-scale patterns of MDN assimilation in rearing coho ( Oncorhynchus kisutch ) and Chinook ( O. tshawytscha ) salmon and compared it with spawner biomass and landscape features in a western Alaska watershed with contrasting structural complexity in two sub-drainages. Adult salmon biomass density was estimated from escapement and spawner distribution data, and MDN assimilation in juvenile salmon was estimated via stable isotopes. In the North River, MDN assimilation was lowest in early summer, prior to annual spawning migrations, increased after spawning, and peaked in late winter. In the more complex mainstem Unalakleet River, MDN assimilation was higher but varied minimally from summer through fall before increasing in late fall and winter. Summer MDN assimilation, prior to salmon spawning, was primarily a function of habitat complexity, where MDN was highest in sloughs and the more complex mainstem river. After salmon spawned, fall MDN assimilation was a function of adult pink and Chinook salmon biomass as well as MDN assimilation that occurred prior to spawning (that is, summer MDN), but unrelated to total summer biomass (all salmon species biomass combined). Thus, MDN assimilation by juvenile salmon in the fall was a function of species-specific adult spawner abundance but seasonal patterns of MDN assimilation were masked in complex habitat where summer MDN assimilation remained high.

Alaska↗