Search USGS⌕ Search

SEARCH · Search USGS

Results for “Wildlifer”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 685 records · Page 38Linked to original sources

Avian wildlife mortality events due to salmonellosis in the United States, 1985-2004

Infection with Salmonella spp. has long been recognized in avian wildlife, although its significance in causing avian mortality, and its zoonotic risk, is not well understood. This study evaluates the role of Salmonella spp. in wild bird mortality events in the United States from 1985 through 2004. Analyses were performed to calculate the frequency of these events and the proportional mortality by species, year, month, state, and region. Salmonellosis was a significant contributor to mortality in many species of birds; particularly in passerines, for which 21.5% of all mortality events involved salmonellosis. The proportional mortality averaged a 12% annual increase over the 20-yr period, with seasonal peaks in January and April. Increased salmonellosis-related mortality in New England, Southeastern, and Mountain-Prairie states was identified. Based on the results of this study, salmonellosis can be considered an important zoonotic disease of wild birds.

Journal of Wildlife Diseases↗

Pathology of mouse (Mus musculus) predation on Laysan albatross (Phoebastria immutabilis) on Midway Atoll National Wildlife Refuge

Invasive rodents on islands have adverse effects on native birds in island ecosystems, and rats are the most common culprits. Recently, house mice ( Mus musculus ) in the South Atlantic were found preying on three species of albatross chicks. Here, we show that house mice can also prey on nesting adult Laysan Albatross ( Phoebastria immutabilis ) on Midway Atoll National Wildlife Refuge (US). In contrast to mouse attacks on albatross in the South Atlantic, where mice targeted the rump and crown of chicks, on Midway, mice targeted nesting adults mainly on the back. For both regions, the outcome was similar with reduced nesting success. In the case of Midway, reduced nesting success was due to nest abandonment or mortality of one or both parents because of secondary bacterial infections. Mouse-induced mortality of adult albatross has the potential to have a more potent demographic effect because of their much higher natural survivorship once they reach adulthood.

Midway Atoll↗

Isothermal recombinant polymerase amplification and CRIPSR (CAS12A) assay detection of Renibacterium salmoninarum as an example for wildlife pathogen detection in environmental DNA samples

Improving rapid detection methods for pathogens is important for research as we collectively aim to improve the health of ecosystems globally. In the northern hemisphere, the success of salmon ( Oncorhynchus spp.) populations is vitally important to the larger marine, aquatic, and terrestrial ecosystems they inhabit. This has led to managers cultivating salmon in hatcheries and aquaculture to bolster their populations, but young salmon face many challenges, including diseases such as bacterial kidney disease (BKD). Early detection of the BKD causative agent, Renibacterium salmoninarum , is useful for managers to avoid outbreaks in hatcheries and aquaculture stocks to enable rapid treatment with targeted antibiotics. Isothermal amplification and CRIPSR-Cas12a systems may enable sensitive, relatively rapid, detection of target DNA molecules from environmental samples compared to quantitative PCR (qPCR) and culture methods. We used these technologies to develop a sensitive and specific rapid assay to detect R. salmoninarum from water samples using isothermal recombinase polymerase amplification (RPA) and an AsCas12a RNA-guided nuclease detection. The assay was specific to R. salmoninarum (0/10 co-occurring or closely related bacteria detected) and sensitive to 0.0128 pg/µL of DNA (approximately 20–40 copies/µL) within 10 min of Cas activity. This assay successfully detected R. salmoninarum environmental DNA in 14/20 water samples from hatcheries with known quantification for the pathogen via previous qPCR (70% of qPCR-positive samples). The RPA-CRISPR/AsCas12a assay had a limit of detection (LOD) of >10 copies/µL in the hatchery water samples and stochastic detection below 10 copies/µL, similar to but slightly higher than the qPCR assay. This LOD enables 37 C isothermal detection, potentially in the field, of biologically relevant levels of R. salmoninarum in water. Further research is needed to develop easy-to-use, cost-effective, sensitive RPA/CRISPR-AsCas12a assays for rapidly detecting low concentrations of wildlife pathogens in environmental samples.

Journal of Wildlife Diseases↗

Bat use of a high-plains urban wildlife refuge

Bats are significant components of mammalian diversity and in many areas are of management concern. However, little attention has been given to bats in urban or prairie landscapes. In 1997 and 1998, we determined species richness, relative abundance, roosting habits, and echolocation activity of bats at Rocky Mountain Arsenal National Wildlife Refuge (RMA), the largest urban unit in the United States refuge system, located on the high plains near Denver, Colorado. An inventory using mist nets revealed 3 species foraging at this site: big brown bats ( Eptesicus fuscus ), hoary bats ( Lasiurus cinereus ), and silver-haired bats ( Lasionycteris noctivagans ). Big brown bats comprised 86% of captures (n=176). This pattern was consistent with continental-scale predictions of bat species richness and evenness based on availability of potential roosts. Relative abundance based on captures was similar to that revealed by echolocation detector surveys, except that the latter revealed the likely presence of at least 2 additional species ( Myotis spp. and red bats [Lasiurus borealis ]). Echolocation activity was significantly greater (P=0.009) in areas with tree or water habitat edges than in open prairie, suggesting that maintaining such features is important for bats. Big brown bats commuted greater distances (9.2-18.8 km) from roosts in urban core areas to foraging sites on the refuge than typically reported for this species elsewhere, emphasizing the value of the site to these bats. Urban refuges can provide habitat of importance to bat populations, but may be characterized by abundant bats that roost in buildings if a variety of other kinds of roosting habitats are unavailable.

Colorado↗

Acidic Depositions: Effects on Wildlife and Habitats

The phenomenon of 'acid rain' is not new; it was recognized in the mid-1800s in industrialized Europe. In the 1960s a synthesis of information about acidification began in Europe, along with predictions of ecological effects. In the U.S. studies of acidification began in the 1920s. By the late 1970s research efforts in the U.S. and Canada were better coordinated and in 1980 a 10-year research program was undertaken through the National Acid Precipitation Assessment Plan (NAPAP) to determine the causes and consequences of acidic depositions. Much of the bedrock in the northeastern U.S. and Canada contains total alkalinity of <200 ?eq 1-1, thus, it lacks acid-neutralizing capacity. In the U.S. about 5% of the land area and in Canada about 43 % of the land area is sensitive to acidic depositions. Further, these areas receive >20 kg/ha/yr of wet sulphate depositions and are vulnerable to acidifying processes. Acidic depositions contribute directly to acidifying processes of soil and soil water. Soils must have sufficient acid-neutralizing capacity or acidity of soil will increase. Natural soil-forming processes that lead to acidification can be accelerated by acidic depositions. Long-term effects of acidification are predicted, which will reduce soil productivity mainly through reduced availability of nutrients and mobilization of toxic metals. Severe effects may lead to major alteration of soil chemistry, soil biota, and even loss of vegetation. Several species of earthworms and several other taxa of soil-inhabiting invertebrates, which are important food of many vertebrate wildlife species, are affected by low pH in soil. Loss of canopy in declining sugar maples results in loss of insects fed on by certain neotropical migrant bird species. No definitive studies categorically link atmospheric acidic depositions with direct or indirect effects on wild mammals. Researchers have concentrated on vegetative and aquatic effects. Circumstantial evidence suggests that effects are probable for certain species of aquatic-dependent mammals (water shrew, mink, and otter) and that these species are at risk from the loss of foods or contamination of these foods by metals, especially methylmercury. Continued acidification of terrestrial habitats, to the extent that earthworm populations are broadly reduced, might expose some fossorial mammalian species to risk because of decline in their major prey species. Acidic deposition affects primarily aquatic habitats of avian species by disrupting food webs (ecological effects) and increasing amounts of available heavy metals (mercury, aluminum, cadmium) in prey of avian species (toxicological effects). The ecological effects of acidifying wetlands are to reduce acid-intolerant prey (invertebrates) and to change prey quality from high-calcium bearing prey to low-calcium bearing prey. The toxicological effects are to increase contamination by heavy metals, especially methylated mercury, in foods of breeding waterbirds. The combination of these 2 types of effects results in potentially lower survival of adults and reduced production, growth, or survival of young of many bird species. Effects of acidification on herpteofauna and their habitats are mainly reproductive failure of susceptible species and reduced or metal-contaminated foods for both amphibians and reptiles.

Wildlife Society Technical Review↗

Situation report: Heavy DDT contamination at Wheeler National Wildlife Refuge

A DDT manufacturing plant that operated on the Redstone Arsenal near Huntsville, Alabama discharged DDT-Iaden effluent from 1947 to 1970 into a creek on Wheeler National Wildlife Refuge. Seven to 9 years after the plant closed, high DDT, DDE, and DDD levels were reported in soils, river sediments, and fish in the area. Eleven of 27 mallards (Anas platyrhynchos) collected on the Refuge during February 1979 had carcass DDE residues that exceeded levels associated with eggshell thinning. DDE residues in a smaller number of mallards exceeded levels associated with egg breakage, poor hatchability, and abnormal hehavior and poor survival of offspring. Several avian species have disappeared from the Refuge since 1950, probably due to both industrial discharges of DDT from the plant and insecticidal use of DDT in the area. The contamination still presents a threat to herons, waterfowl, and raptors including occasional wintering or migrant eagles (Haliaeetus leucocephalus), and probably many other avian species. A maternity colony of endangered gray bats (Myotis grisescens) is also threatened by this contamination.

Proceedings of the Annual Conference of the Southe↗

Impacts of forest herbicides on wildlife: Toxicity and habitat alteration

This paper begins with a review of both laboratory and field studies on tbe possible direct toxic effects of herbicides on terrestrial vertebrates, primarily birds and mammals. Alteration of the palatability of forage and changes in reproductive success are also discussed. Emphasis is placed on the use of herbicides in forestry; studies dealing with agricultural systems are referenced where appropriate. The indirect effects of herbicides on wildlife-habitat are then conceptualized and quantified using data from a 3-year study on effects of phenoxy and glyphosate herbicides on bird and small mammal communities in western Oregon. Data on density and habitat use are presented and compared with data available from other geographic regions.

Transactions of the North American Wildlife and Na↗

Objectives and metrics for wildlife monitoring

Monitoring surveys allow managers to document system status and provide the quantitative basis for management decision-making, and large amounts of effort and funding are devoted to monitoring. Still, monitoring surveys often fall short of providing required information; inadequacies exist in survey designs, analyses procedures, or in the ability to integrate the information into an appropriate evaluation of management actions. We describe current uses of monitoring data, provide our perspective on the value and limitations of current approaches to monitoring, and set the stage for 3 papers that discuss current goals and implementation of monitoring programs. These papers were derived from presentations at a symposium at The Wildlife Society's 13th Annual Conference in Anchorage, Alaska, USA. [2006]

Journal of Wildlife Management↗

Effects of DDT on saltmarsh wildlife: 1949

Briefly describes DDT experimental spraying program, wildlife species studied, the marsh, and tidal movements. Discusses resulting effects of DDT on vertebrates and invertebrates.

Special Scientific Report - Wildlife↗

Wildlife importation into the United States, 1900-1972

Data from Bureau of Biological Survey and U.S. Fish and Wildlife Service reports show an overall increase in the number of birds and mammals imported from 1900 to 1972. The trend was interrupted by World War I, the economic depression of the 1930's, and World War II. Data are lacking for the years after World War II until 1968. Until 1942, domesticated canaries and a few species of game birds made up most of the avian imports; the shell parakeet or budgerigar was the most commonly imported parrot. Although the total number ofbirds imported 1968-72 was-not greatly different from the pre-depression years, the proportion of canaries, game species, and parakeets declined greatly and the variety and number of cage birds including other parrot species greatly increased. Until 1930 most mammals imported were for laboratory use or fur farming. After 1930 the number of imported mammals increased with the growing importance of primates, especially rhesus macaques, in research. Since 1968 the number of mammals irnported annually has been at least 5 times greater than the previous peak of 1938, and primates have made up 87% of mammalian imports. Information on reptiles and amphibians imported into the United States is available only for 1970 and 1971. Turtles were the most commonly imported reptiles, frogs and toads the most commonly imported amphibians.

Special Scientific Report - Wildlife↗

Forage site selection by lesser snow geese during autumn staging on the Arctic National Wildlife Refuge, Alaska

Lesser snow geese ( Chen caerulescens caerulescens ) of the Western Canadian Arctic Population feed intensively for 2-4 weeks on the coastal plain of the Beaufort Sea in Canada and Alaska at the beginning of their autumn migration. Petroleum leasing proposed for the Alaskan portion of the staging area on the Arctic National Wildlife Refuge (ANWR) could affect staging habitats and their use by geese. Therefore we studied availability, distribution, and use by snow geese of tall and russett cotton-grass ( Eriophorum angustifolium and E. russeolum , respectively) feeding habitats on the ANWR. We studied selection of feeding habitats at 3 spatial scales (feeding sites [0.06 m 2 ], feeding patches [ca. 100 m 2 ], and feeding areas [>1 ha]) during 1990-93. We used logistic regression analysis to discriminate differences in soil moisture and vegetation between 1,548 feeding sites where snow geese exploited individual cotton-grass plants and 1,143 unexploited sites at 61 feeding patches in 1990. Feeding likelihood increased with greater soil moisture and decreased where nonforage species were present. We tested the logistic regression model in 1991 by releasing human-imprinted snow geese into 4 10 × 20-m enclosed plots where plant communities had been mapped, habitats sampled, and feeding probabilities calculated. Geese selected more feeding sites per square meter in areas of predicted high quality feeding habitat (feeding probability ≥ 0.6) than in medium (feeding probability = 0.3-0.59) or poor (feeding probability < 0.3) quality habitat (P < 0.0001). Geese increasingly used medium quality areas and spent more time feeding as trials progressed and forage was presumably reduced in high quality habitats. We examined relationships between underground biomass of plants, feeding probability, and surface microrelief at 474 0.06- m 2 sites in 20 thermokarst pits in 1992. Feeding probability was correlated with the percentage of underground biomass composed of cotton-grass (r = 0.56). Feeding probability and relative availability of cotton-grass forage were highest in flooded soils along the ecotone of flooded and upland habitats. In 1992, we also used the logistic regression model to estimate availability of high quality feeding sites on 192 80 × 90-m plots that were randomly located on 24 study areas. A mean of 1.6% of the area sampled in each plot was classified as high quality feeding habitat at 23 of the study areas. Relative availability of high quality sites was highest in troughs, thermokarst pits, and water tracks because saturated soils in those microreliefs were dominated by cotton-grass. Relative availability of high quality sites was lower in saturated soils of basins (low-centered polygons, wet meadows, and strangmoor) because that microrelief was dominated by Carex spp. Most (63%) of the saturated area on the ANWR coastal plain was in basins. We examined distribution of feeding patches relative to microrelief in 49 snow goose feeding areas in 1993. Only 2.5% of the tundra in each feeding area was exploited by snow geese. Snow geese preferentially fed in thermokarst pits, water tracks, and troughs, and avoided basins and uplands. Feeding areas had more thermokarst pit but less basin microrelief than adjacent randomly-selected areas. Thermokarst pits and water tracks occurred most frequently in regions of the coastal plain where geese were observed most often during aerial surveys (1982-93). Microrelief influenced selection of feeding patches and feeding areas and may have affected snow goose distribution on the ANWR. Potential feeding patches were widely distributed but composed a small percentage (≤2.5%) of the tundra landscape and were highly interspersed with less suitable habitat. The Western Canadian Arctic Population probably used a large staging area on the Beaufort Sea coastal plain because snow geese exploited a spatially and temporally heterogeneous resource.

Alaska↗

Use and interpretation of statistics in wildlife journals

Use and interpretation of statistics in wildlife journals are reviewed, and suggestions for improvement are offered. Populations from which inferences are to be drawn should be clearly defined, and conclusions should be limited to the range of the data analyzed. Authors should be careful to avoid improper methods of plotting data and should clearly define the use of estimates of variance, standard deviation, standard error, or confidence intervals. Biological and statistical significant are often confused by authors and readers. Statistical hypothesis testing is a tool, and not every question should be answered by hypothesis testing. Meeting assumptions of hypothesis tests is the responsibility of authors, and assumptions should be reviewed before a test is employed. The use of statistical tools should be considered carefully both before and after gathering data.

Wildlife Society Bulletin↗

Variation in detection among passive infrared triggered-cameras used in wildlife research

Precise and accurate estimates of demographics such as age structure, productivity, and density are necessary in determining habitat and harvest management strategies for wildlife populations. Surveys using automated cameras are becoming an increasingly popular tool for estimating these parameters. However, most camera studies fail to incorporate detection probabilities, leading to parameter underestimation. The objective of this study was to determine the sources of heterogeneity in detection for trail cameras that incorporate a passive infrared (PIR) triggering system sensitive to heat and motion. Images were collected at four baited sites within the Conecuh National Forest, Alabama, using three cameras at each site operating continuously over the same seven-day period. Detection was estimated for four groups of animals based on taxonomic group and body size. Our hypotheses of detection considered variation among bait sites and cameras. The best model (w=0.99) estimated different rates of detection for each camera in addition to different detection rates for four animal groupings. Factors that explain this variability might include poor manufacturing tolerances, variation in PIR sensitivity, animal behavior, and species-specific infrared radiation. Population surveys using trail cameras with PIR systems must incorporate detection rates for individual cameras. Incorporating time-lapse triggering systems into survey designs should eliminate issues associated with PIR systems.

Proceedings of the Annual Conference of the Southe↗

Restoring a forest icon: Could returning the American chestnut remodel our wildlife landscape?

Mother Nature was not making it easy. It was February 18, 2009, and winds were gusting, sleet was falling, and temperatures were hovering around 40° F. Our crew of 9 which consisted of personnel from the USDA Forest Service Southern Research Station, the Cherokee National Forest, and The University of Tennessee’s Tree Improvement Program, was attempting to establish the first test planting of American chestnuts ( Castanea dentata ) bred for resistance to an exotic fungal pathogen, the chestnut blight ( Cryphonectria parasitica ). With each hole dug and seedlings tamped into the ground, our hope was that we were one step closer to restoring an important wildlife food to eastern hardwood forests.

Alabama, Connecticut, Delaware, Georgia, Illinois,↗

Carbon flux, storage, and wildlife co-benefits in a restoring estuary

Tidal marsh restorations may result in transitional mudflat habitats depending on hydrological and geomorphological conditions. Compared to tidal marsh, mudflats are thought to have limited value for carbon sequestration, carbon storage, and foraging benefits for salmon. We evaluated greenhouse gas exchange, sediment carbon storage, and invertebrate production at restoration and reference tidal marsh sites within the Nisqually River Delta, Puget Sound, Washington. Within the first seven years, the restoration site was a sparsely vegetated mudflat that didn't sequester atmospheric CO2; but, had sediment carbon accumulation rates similar to the reference site due to allochthonous carbon subsidies from nearby mature marshes. Compared to other estuarine habitat types, the tidal marsh supported the greatest production of energy-rich insect prey for juvenile salmon; yet, the restoration site produced similar, and at times elevated, invertebrate prey resources and prey energy compared to the reference site. As a result, salmon that foraged within the restoration site gained measurable benefits as indicated by their bioenergetic growth potential. The restoration site received carbon subsidies from the broader estuarine landscape for both sediment carbon accumulation and invertebrate prey production. These findings demonstrate the importance of habitat connectivity and show how blue carbon and wildlife co-benefits are closely intertwined.

Washington↗

Pairing field methods to improve inference in wildlife surveys while accommodating detection covariance

It is common to use multiple field sampling methods when implementing wildlife surveys to compare method efficacy or cost efficiency, integrate distinct pieces of information provided by separate methods, or evaluate method-specific biases and misclassification error. Existing models that combine information from multiple field methods or sampling devices permit rigorous comparison of method-specific detection parameters, enable estimation of additional parameters such as false-positive detection probability, and improve occurrence or abundance estimates, but with the assumption that the separate sampling methods produce detections independently of one another. This assumption is tenuous if methods are paired or deployed in close proximity simultaneously, a common practice that reduces the additional effort required to implement multiple methods and reduces the risk that differences between method-specific detection parameters are confounded by other environmental factors. We develop occupancy and spatial capture–recapture models that permit covariance between the detections produced by different methods, use simulation to compare estimator performance of the new models to models assuming independence, and provide an empirical application based on American marten ( Martes americana ) surveys using paired remote cameras, hair catches, and snow tracking. Simulation results indicate existing models that assume that methods independently detect organisms produce biased parameter estimates and substantially understate estimate uncertainty when this assumption is violated, while our reformulated models are robust to either methodological independence or covariance. Empirical results suggested that remote cameras and snow tracking had comparable probability of detecting present martens, but that snow tracking also produced false-positive marten detections that could potentially substantially bias distribution estimates if not corrected for. Remote cameras detected marten individuals more readily than passive hair catches. Inability to photographically distinguish individual sex did not appear to induce negative bias in camera density estimates; instead, hair catches appeared to produce detection competition between individuals that may have been a source of negative bias. Our model reformulations broaden the range of circumstances in which analyses incorporating multiple sources of information can be robustly used, and our empirical results demonstrate that using multiple field-methods can enhance inferences regarding ecological parameters of interest and improve understanding of how reliably survey methods sample these parameters.

Maine↗

Dynamic wildlife occupancy models using automated acoustic monitoring data

Automated acoustic monitoring of wildlife has been used to characterize populations of sound-producing species across large spatial scales. However, false negatives and false positives produced by automated detection systems can compromise the utility of these data for researchers and land managers, particularly for research programs endeavoring to describe colonization and extinction dynamics that inform land use decision-making. To investigate the suitability of automated acoustic monitoring for dynamic occurrence models, we simulated underlying occurrence dynamics, calling patterns, and the automated acoustic detection process for a hypothetical species under a range of scenarios. We investigated an automated species detection aggregation method that considered a suite of options for creating encounter histories. From these encounter histories, we generated parameter estimates and computed bias for occurrence, colonization, and extinction rates using a dynamic occupancy modeling framework that accounts for false positives via small amounts of manual confirmation. We were able to achieve relatively unbiased estimates for all three state parameters under all scenarios, even when the automated detection system was simulated to be poor, given particular encounter history aggregation choices. However, some encounter history aggregation choices resulted in unreliable estimates; we provide caveats for avoiding these scenarios. Given specific choices during the detection aggregation process, automated acoustic monitoring data may provide an effective means for tracking species occurrence, colonization, and extinction patterns through time, with the potential to inform adaptive management at multiple spatial scales.

Ecological Applications↗