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USGS2023

A complex record of last interglacial sea-level history and paleozoogeography, Santa Rosa Island, Channel Islands National Park, California, USA

Studies of marine terraces and their fossils can yield important information about sea level history, tectonic uplift rates, and paleozoogeography, but some aspects of terrace history, particularly with regard to their fossil record, are not clearly understood. Marine terraces are well preserved on Santa Rosa Island, California, and the island is situated near a major marine faunal boundary. Two prominent low-elevation terraces record the ∼80 ka (marine isotope stage [MIS] 5a) and ∼120 ka (MIS 5e) high-sea stands, based on U-series dating of fossil corals and aminostratigraphic correlation to dated localities elsewhere in California and Baja California. Low uplift rates are implied by an interpretation of these ages, along with their elevations. The fossil assemblage from the ∼120 ka (2nd) terrace contains a number of northern, cool-water species, along with several southern, warm-water species, a classic example of what has been called a thermally anomalous fauna. Low uplift rates in the late Pleistocene, combined with glacial isostatic adjustment (GIA) processes, could have resulted in reoccupation of the ∼120 ka (MIS 5e), 2nd terrace during the ∼100 ka (MIS 5c) high-sea stand, explaining the mix of warm-water (∼120 ka?) and cool-water (∼100 ka?) fossils in the terrace deposits. In addition, however, sea surface temperature (SST) variability during MIS 5e may have been a contributing factor, given that Santa Rosa Island is bathed at times by the cold California Current with its upwelling and at other times is subject to El Niño warm waters, evident in the Holocene SST record. Study of an older, high-elevation marine terrace on the western part of Santa Rosa Island shows more obvious evidence of fossil mixing. Strontium isotope ages span a large range, from ∼2.3 Ma to ∼0.91 Ma. These analyses indicate an age range of ∼500 ka at one locality and ∼ 600 ka at another locality, interpreted to be due to terrace reoccupation and fossil reworking. Consideration of elevations and ages here also yield low, long-term uplift rates, which in part explains the potential for terrace reoccupation in the early Pleistocene. In addition, however, early Pleistocene glacial-interglacial cycles were of much shorter duration, linked to the ∼41 ka obliquity cycle of orbital forcing, a factor that would also enhance terrace reoccupation in regions of low uplift rate. It is likely that other Pacific Coast marine terrace localities of early Pleistocene age, in areas with low uplift rates, also have evidence of fossil mixing from these processes, an hypothesis that can be tested in future studies.

California↗

USGS2008

Stratigraphic and compositional complexities of the late Quaternary Lethe tephra in South-central Alaska

Recently discovered Lethe tephra has been proposed as a latest Pleistocene marker bed in Bristol Bay lowland NE to the Cook Inlet region, Alaska, on the basis of correlations involving a single "Lethe average" glass composition. Type deposits in the Valley of Ten Thousand Smokes, however, are chemically heterogeneous-individual lapilli as well as aggregate ash deposits have glass compositions that range from the average mode to much higher SiO2 and K2O. Moreover, a lake-sediment core from the Cook Inlet region contains one ash deposit similar to "Lethe average" and other, closely underlying deposits that resemble a mixture of the average mode and high-Si high-K mode of proximal deposits. Synthesis of previously published radiocarbon ages indicates a major eruption mainly of "Lethe average" mode about 13,000 14C yr BP. As many as six deposits in the Cook Inlet region-five chiefly "Lethe average" mode-range from about 13,000 to 15-16,000 14C yr BP, and an early Holocene deposit in the Bristol Bay lowland extends the minimum age range of Lethe tephra throughout this region to 8000 14C yr BP. Because of the appearance of "Lethe average" composition in multiple deposits spanning thousands of years, we urge caution when using a Lethe-like composition as a basis for inferring a latest Pleistocene age of a tephra deposit in south-central Alaska. Linear variation plots suggest that magma mixing caused the Lethe heterogeneity; multiple magmas were involved as well in other large pyroclastic eruptions such as Katmai (Alaska) and Rotorua (New Zealand). Lethe is an example of a heterogeneous tephra that may be better compared with other tephras by use of plots of individual analytical points rather than by calculating similarity coefficients based on edited data. ?? 2006 Elsevier Ltd and INQUA.

Quaternary International↗

USGS2012

Sea-level history during the Last Interglacial complex on San Nicolas Island, California: implications for glacial isostatic adjustment processes, paleozoogeography and tectonics

San Nicolas Island, California has one of the best records of fossiliferous Quaternary marine terraces in North America, with at least fourteen terraces rising to an elevation of ~270 m above present-day sea level. In our studies of the lowest terraces, we identified platforms at 38-36 m (terrace 2a), 33-28 m (terrace 2b), and 13-8 m (terrace 1). Uranium-series dating of solitary corals from these terraces yields three clusters of ages: ~120 ka on terrace 2a (marine isotope stage [MIS] 5.5), ~120 and ~100 ka on terrace 2b (MIS 5.5 and 5.3), and ~80 ka (MIS 5.1) on terrace 1. We conclude that corals on terrace 2b that date to ~120 ka were reworked from a formerly broader terrace 2a during the ~100 ka sea stand. Fossil faunas differ on the three terraces. Isolated fragments of terrace 2a have a fauna similar to that of modern waters surrounding San Nicolas Island. A mix of extralimital southern and extralimital northern species is found on terrace 2b, and extralimital northern species are on terrace 1. On terrace 2b, with its mixed faunas, extralimital southern species, indicating warmer than present waters, are interpreted to be from the ~120 ka high sea stand, reworked from terrace 2a. The extralimital northern species on terrace 2b, indicating cooler than present waters, are interpreted to be from the ~100 ka sea stand. The abundant extralimital northern species on terrace 1 indicate cooler than present waters at ~80 ka. Using the highest elevations of the ~120 ka platform of terrace 2a, and assuming a paleo-sea level of +6 m based on previous studies, San Nicolas Island has experienced late Quaternary uplift rates of ~0.25-0.27 m/ka. These uplift rates, along with shoreline angle elevations and ages of terrace 2b (~100 ka) and terrace 1 (~80 ka) yield relative (local) paleo-sea level elevations of +2 to +6 m for the ~100 ka sea stand and -11 to -12 m for the ~80 ka sea stand. These estimates are significantly higher than those reported for the ~100 ka and ~80 ka sea stands on New Guinea and Barbados. Numerical models of the glacial isostatic adjustment (GIA) process presented here demonstrate that these differences in the high stands are expected, given the variable geographic distances between the sites and the former Laurentide and Cordilleran ice sheets. Moreover, the numerical results show that the absolute and differential elevations of the observed high stands provide a potentially important constraint on ice volumes during this time interval and on Earth structure.

California↗

USGS2012

Early retreat of the Alaska Peninsula Glacier Complex and the implications for coastal migrations of First Americans

The debate over a coastal migration route for the First Americans revolves around two major points: seafaring technology, and a viable landscape and resource base. Three lake cores from Sanak Island in the western Gulf of Alaska yield the first radiocarbon ages from the continental shelf of the Northeast Pacific and record deglaciation nearly 17 ka BP (thousands of calendar years ago), much earlier than previous estimates based on extrapolated data from other sites outside the coastal corridor in the Gulf of Alaska. Pollen data suggest an arid, terrestrial ecosystem by 16.3 ka BP. Therefore glaciers would not have hindered the movement of humans along the southern edge of the Bering Land Bridge for two millennia before the first well-recognized “New World” archaeological sites were inhabited.

Alaska↗

USGS2015

The Holocene history of the North American Monsoon: 'known knowns' and 'known unknowns' in understanding its spatial and temporal complexity

Evidence for climatic change across the North American Monsoon (NAM) and adjacent areas is reviewed, drawing on continental and marine records and the application of climate models. Patterns of change at 12,000, 9000, 6000 and 4000 cal yr BP are presented to capture the nature of change from the Younger Dryas (YD) and through the mid-Holocene. At the YD, conditions were cooler overall, wetter in the north and drier in the south, while moving into the Holocene wetter conditions became established in the south and then spread north as the NAM strengthened. Until c. 8000 cal yr BP, the Laurentide Ice Sheet influenced precipitation in the north by pushing the Bermuda High further south. The peak extent of the NAM seems to have occurred around 6000 cal yr BP. 4000 cal yr BP marks the start of important changes across the NAM region, with drying in the north and the establishment of the clear differences between the summer-rain dominated south and central areas and the north, where winter rain is more important. This differentiation between south and north is crucial to understanding many climate responses across the NAM. This increasing variability is coincident with the declining influence of orbital forcing. 4000 cal yr BP also marks the onset of significant anthropogenic activity in many areas. For the last 2000 years, the focus is on higher temporal resolution change, with strong variations across the region. The Medieval Climate Anomaly (MCA) is characterised by centennial scale ‘megadrought’ across the southwest USA, associated with cooler tropical Pacific SSTs and persistent La Niña type conditions. Proxy data from southern Mexico, Central America and the Caribbean reveal generally wetter conditions, whereas records from the highlands of central Mexico and much of the Yucatan are typified by long -term drought. The Little Ice Age (LIA), in the north, was characterised by cooler, wetter winter conditions that have been linked with increased frequency of El Niño's. Proxy records in the central and southern regions reveal generally dry LIA conditions, consistent with cooler SSTs in the Caribbean and Gulf of Mexico. This synthesis demonstrates that in some periods, one major forcing can dominate across the whole area (e.g. insolation in the early-mid Holocene), but at other times there is strong variability in patterns of change due to the differential impact of forcings such as the Pacific Decadal Oscillation (PDO) and the Atlantic Multidecadal Oscillation (AMO) on precipitation seasonality.

Quaternary Science Reviews↗

USGS2020

Spatial variability of phytoplankton in a shallow tidal freshwater system reveals complex controls on abundance and community structure

Estuaries worldwide are undergoing changes to patterns of aquatic productivity because of human activities that alter flow, impact sediment delivery and thus the light field, and contribute nutrients and contaminants like pesticides and metals. These changes can influence phytoplankton communities, which in turn can alter estuarine food webs. We used multiple approaches-including high-resolution water quality mapping, synoptic sampling, productivity and nitrogen uptake rates, Lagrangian parcel tracking, enclosure experiments and bottle incubations-over a short time period to take a “spatial snapshot” of conditions in the northern region of the San Francisco Estuary (California, USA) to examine how environmental drivers like light availability, nutrients, water residence time, and contaminants affect phytoplankton abundance and community attributes like size distribution, taxonomic structure, and nutrient uptake rates. Zones characterized by longer residence time (15–60 days) had higher chlorophyll-a concentrations (9 ± 4 µg L −1 ) and were comprised primarily of small phytoplankton cells (<5 µm, 74 ± 8%), lower ammonium concentrations (1 ± 0.8 µM), higher nitrate uptake rates, and higher rates of potential carbon productivity. Conversely, zones characterized by shorter residence time (1–14 days) had higher ammonium concentration (13 ± 5 µM) and lower chlorophyll-a concentration (5 ± 1 µg L −1 ) with diatoms making up a larger percent contribution. Longer residence time, however, did not result in the accumulation of large (>5 µm) cells considered important to pelagic food webs. Rather, longer residence time zones had a phytoplankton community comprised primarily of small cells, particularly picocyanobacteria that made up 38 ± 17% of the chlorophyll-a – nearly double the concentration seen in shorter residence time zones (22 ± 7% picocyanobacterial of chlorophyll-a). Our results suggest that water residence time in estuaries may have an effect as large or larger than that experimentally demonstrated for light, contaminants, or nutrients.

California↗

USGS2020

Daily stream samples reveal highly complex pesticide occurrence and potential toxicity to aquatic life

Transient, acutely toxic concentrations of pesticides in streams can go undetected by fixed-interval sampling programs. Here we compare temporal patterns in occurrence of current-use pesticides in daily composite samples to those in weekly composite and weekly discrete samples of surface water from 14 small stream sites. Samples were collected over 10–14 weeks at 7 stream sites in each of the Midwestern and Southeastern United States. Samples were analyzed for over 200 pesticides and degradates by direct aqueous injection liquid chromatography with tandem mass spectrometry. Nearly 2 and 3 times as many unique pesticides were detected in daily samples as in weekly composite and weekly discrete samples, respectively. Based on exceedances of acute-invertebrate benchmarks (AIB) and(or) a Pesticide Toxicity Index (PTI) >1, potential acute-invertebrate toxicity was predicted at 11 of 14 sites from the results for daily composite samples, but was predicted for only 3 sites from weekly composites and for no sites from weekly discrete samples. Insecticides were responsible for most of the potential invertebrate toxicity, occurred transiently, and frequently were missed by the weekly discrete and composite samples. The number of days with benthic-invertebrate PTI ≥0.1 in daily composite samples was inversely related to Ephemeroptera, Plecoptera, and Trichoptera (EPT) richness at the sites. The results of the study indicate that short-term, potentially toxic peaks in pesticides frequently are missed by weekly discrete sampling, and that such peaks may contribute to degradation of invertebrate community condition in small streams. Weekly composite samples underestimated maximum concentrations and potential acute-invertebrate toxicity, but to a lesser degree than weekly discrete samples, and provided a reasonable approximation of the 90th percentile total concentrations of herbicides, insecticides, and fungicides, suggesting that weekly composite sampling may be a compromise between assessment needs and cost.

Science of the Total Environment↗

USGS2023

The truth is in the stream: Use of tracer techniques and synoptic sampling to evaluate metal loading and remedial options in a hydrologically complex setting

Two synoptic sampling campaigns were conducted to quantify metal loading to Illinois Gulch, a small stream affected by historical mining activities. The first campaign was designed to determine the degree to which Illinois Gulch loses water to the underlying mine workings, and to determine the effect of these losses on observed metal loads. The second campaign was designed to evaluate metal loading within Iron Springs, a subwatershed that was responsible for the majority of the metal loading observed during the first campaign. A continuous, constant-rate injection of a conservative tracer was initiated prior to both sampling campaigns and maintained throughout the duration of each study. Tracer concentrations were subsequently used to determine streamflow in gaining stream reaches using the tracer-dilution method, and as an indicator of hydrologic connections between Illinois Gulch and subsurface mine workings. Streamflow losses to the mine workings were quantified during the first campaign using a series of slug additions in which specific conductivity readings were used as a surrogate for tracer concentration. Data from the continuous injections and slug additions were combined to develop spatial streamflow profiles along each study reach. Streamflow estimates were multiplied by observed metal concentrations to yield spatial profiles of metal load that were in turn used to quantify and rank metal sources. Study results indicate that Illinois Gulch loses water to subsurface mine workings and suggest that remedial measures that reduce flow loss (e.g. channel lining) could lessen metal loading from the Iron Springs area. The primary sources of metals to Illinois Gulch include diffuse springs and groundwater, and a draining mine adit. Diffuse sources were determined to have a much larger effect on water quality than other sources that had been the subject of previous investigations due to their visual appearance, supporting the idea that “the truth is in the stream”. The overall approach of combining spatially intensive sampling with a rigorous hydrological characterization is applicable to non-mining constituents such as nutrients and pesticides.

Colorado↗

USGS2021

Complex evolutionary history of felid anelloviruses

Anellovirus infections are highly prevalent in mammals, however, prior to this study only a handful of anellovirus genomes had been identified in members of the Felidae family. Here we characterise anelloviruses in pumas ( Puma concolor ), bobcats ( Lynx rufus ), Canada lynx ( Lynx canadensis ), caracals ( Caracal caracal ) and domestic cats ( Felis catus ). The complete anellovirus genomes (n = 220) recovered from 149 individuals were diverse. ORF1 protein sequence similarity network analysis coupled with phylogenetic analysis, revealed two distinct clusters that are populated by felid-derived anellovirus sequences, a pattern mirroring that observed for the porcine anelloviruses. Of the two-felid dominant anellovirus groups, one includes sequences from bobcats, pumas, domestic cats and an ocelot, and the other includes sequences from caracals, Canada lynx, domestic cats and pumas. Coinfections of diverse anelloviruses appear to be common among the felids. Evidence of recombination, both within and between felid-specific anellovirus groups, supports a long coevolution history between host and virus.

Virology↗

USGS2002

The tectonic framework of a complex pull-apart basin: Seismic reflection observations in the Sea of Galilee, Dead Sea transform

A multi-channel seismic reflection survey consisting of 20 lines with a total length of 180 km was conducted in the Sea of Galilee. The data provide new insights into the Pliocene-Quaternary evolution of the Kinarot-Beit-Shean pull-apart basin (KBSB) along the Dead Sea transform. Two distinct zones are defined beneath the lake: (1) a graben that underlies most of the lake, bounded by steep north-south longitudinal strike-slip faults and (2) shallow pre-rift units underlying the northwestern wider part of the lake. We suggest that before approximately 4 Ma, the KBSB grew due to northward movement of the Korazim Plateau and by crustal stretching along the rift axis. Since the Pliocene (??? 4 Ma), lateral slip has been transferred from the southern segment of the basin's western marginal fault to normal faults in the Galilee, and to the eastern margin of the Korazim Plateau by the newly formed, Almagor fault, which makes a restraining bend along the transform. N-S lithospheric stretching below the KBSB has diminished and the Korazim Plateau has changed from being a detached block to a compressional saddle. A phase of rapid subsidence, and formation of a half-graben structure in the northern part of the basin approximately 1 Ma ago was coeval with major deformation in areas adjacent to the KBSB, indicating major reorganization of the plate boundary in the region. Currently, most transform motions are probably taken up along a single fault on the eastern side of the KBSB, implying that the main trough under the Sea of Galilee is in a late stage of growth as a pull-apart. ?? 2002 Elsevier Science B.V. All rights reserved.

Tectonophysics↗

USGS2002

Energy budget above a high-elevation subalpine forest in complex topography

Components of the energy budget were measured above a subalpine coniferous forest over two complete annual cycles. Sensible and latent heat fluxes were measured by eddy covariance. Bowen ratios ranged from 0.7 to 2.5 in the summer (June–September) depending upon the availability of soil water, but were considerably higher (∼3–6) during winter (December–March). Energy budget closure averaged better than 84% on a half-hourly basis in both seasons with slightly greater closure during the winter months. The energy budget showed a dependence on friction velocity ( u ∗ ), approaching complete closure at u ∗ values greater than 1 m s −1 . The dependence of budget closure on u ∗ explained why energy balance was slightly better in the winter as opposed to summer, since numerous periods of high turbulence occur in winter. It also explained the lower degree of energy closure (∼10% less) during easterly upslope flow since these periods were characterized by low wind speeds ( U <4 m s −1 ) and friction velocities ( u ∗ <0.5 "> u∗<0.5 m s −1 ). Co-spectral analysis suggests a shift of flux density towards higher frequencies under conditions where closure was obtained. It is suggested that low frequency contributions to the flux and advection were responsible for the lack of day-time energy budget closure. These effects were reduced at high friction velocities observed at our site. Our ability to close the energy budget at night was also highly dependent on friction velocity, approaching near closure (∼90%) at u ∗ values between 0.7 and 1.1 m s −1 . Below this range, the airflow within the canopy becomes decoupled with the flow above. Above this range, insufficient temperature resolution of the sonic anemometer obscured the small temperature fluctuations, rendering measurements intractable.

Agricultural and Forest Meteorology↗

USGS2023

Complex life histories alter patterns of mercury exposure and accumulation in a pond-breeding amphibian

Quantifying how contaminants change across life cycles of species that undergo metamorphosis is critical to assessing organismal risk, particularly for consumers. Pond-breeding amphibians can dominate aquatic animal biomass as larvae and are terrestrial prey as juveniles and adults. Thus, amphibians can be vectors of mercury exposure in both aquatic and terrestrial food webs. However, it is still unclear how mercury concentrations are affected by exogenous (e.g., habitat or diet) vs endogenous factors (e.g., catabolism during hibernation) as amphibians undergo large diet shifts and periods of fasting during ontogeny. We measured total mercury (THg), methylmercury (MeHg), and isotopic compositions (δ 13 C, δ 15 N) in boreal chorus frogs ( Pseudacris maculata ) across five life stages in two Colorado (USA) metapopulations. We found large differences in concentrations and percent MeHg (of THg) among life stages. Frog MeHg concentrations peaked during metamorphosis and hibernation coinciding with the most energetically demanding life cycle stages. Indeed, life history transitions involving periods of fasting coupled with high metabolic demands led to large increases in mercury concentrations. The endogenous processes of metamorphosis and hibernation resulted in MeHg bioamplification, thus decoupling it from the light isotopic proxies of diet and trophic position. These step changes are not often considered in conventional expectations of how MeHg concentrations within organisms are assessed.

Environmental Science & Technology↗

USGS2018

Potential toxicity of complex mixtures in surface waters from a nationwide survey of United States streams: Identifying in vitro bioactivities and causative chemicals

While chemical analysis of contaminant mixtures remains an essential component of environmental monitoring, bioactivity-based assessments using in vitro systems increasingly play a role in the detection of biological effects. Historically, in vitro assessments focused on a few biological pathways, e.g., aryl hydrocarbon receptor (AhR) or estrogen receptor (ER) activities. High-throughput screening (HTS) technologies have greatly increased the number of biological targets and processes that can be rapidly assessed. Here we screened extracts of surface waters from nationwide survey of United States (US) streams for bioactivities associated with 69 different endpoints using two multiplexed HTS assays. Bioactivity of extracts from 38streams was evaluated and compared with concentrations of over 700 analytes to identify chemicals contributing to observed effects. Eleven primary biological endpoints were detected. Pregnane X receptor and AhR-mediated activities were the most commonly detected. Measured chemicals did not completely account for AhR and PXR responses. Surface waters with AhR and PXR effects were associated with low intensity, developed land-cover. Likewise, elevated bioactivities frequently associated with wastewater discharges included endocrine related endpoints— ER and glucocorticoid receptor (GR). These results underscore the value of bioassay-based monitoring of environmental mixtures for detecting biological effects that could not be ascertained solely through chemical analyses.

Environmental Science & Technology↗

USGS2015

Application of a microfluidic quantitative polymerase chain reaction technique to monitor bacterial pathogens in beach water and complex environmental matrices

Microfluidic quantitative polymerase chain reaction (MFQPCR) and conventional quantitative polymerase chain reaction methods were compared side by side in detecting and quantifying 19 genetic markers associated with Escherichia coli and select bacterial pathogens in algae, beach sand, and water from Lake Michigan. Enteropathogenic E. coli (EPEC), Shiga toxin-producing E. coli , Salmonella spp., Campylobacter jejuni , and Clostridium perfringens were among the pathogens tested. Of the pathogenic markers, eaeA that encodes intimin in EPEC was detected in all sample types: water (5%), detached/floating algae (42%), exposed/stranded algae (43%), sand below exposed algae (27%), and nearshore sand with no algae (22%). Other pathogenic markers, however, were detected sporadically. Despite comparable results from the two methods for the genetic markers tested in this study, the MFQPCR method may be superior, with the advantage of detecting and quantifying multiple pathogens simultaneously in environmental matrices.

Indiana↗

USGS2002