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USGS1995

Structure of the basins and ranges, Southwest New Mexico, an interpretation of seismic velocity sections

This report presents a geologic appraisal of seismic velocity sections that profile a total of 790 km in southwest New Mexico west of Las Cruces and south of Lordsburg and Deming. The present work outlines the contribution of these velocity sections to estimating areas favorable for mineral resource occurrences. Seismic refraction surveys are carried out with the initial goal of estimating the subsurface distribution of acoustic compressional velocity (Vp), which may ultimately be interpreted to provide information on lithology, geologic structure, and the occurrence of natural resources. The seismic sections presented here show velocity detail having dimensions of 100's to 1000's of meters to a depth of about 2.5 km, and across a net of traverses that profile most basins well as several ranges in the study area. Figure 1 shows the location of the seismic refraction lines. The lines are designated 1, 2, 3, 4, 5, and 7; there is no line 6. The survey covers a broad swath of the southwest Basin and Range Province extending from the Arizona border eastward to the Rio Grande River, and from the Mexican border to about lat. 32° 30' N. Lines 1, 3, and 7 traverse the axis of basins in roughly northsouth directions; the remaining lines 2, 4, and 5 trend east-west and cross various ranges and basins. Seismic data that have been collected in this region include deep-crustal refraction traverses by university scientists and commercial seismic reflection profiles acquired for petroleum exploration. Results of deep-crustal refraction studies are reviewed to provide a regional setting for the higher resolution refraction data. Results from seismic reflection will not be discussed. Industry reflection data in the area are not generally available for non-proprietary use. The nearest reflection data publicly available are in the Socorro area, about 80 km north of the present study area (Brown and others, 1980). These data were acquired by the Consortium for Continental Reflection Profiling (COCORP), a public-supported research group, to investigate the possibility of magma beneath part of the Rio Grande valley. Up to 1978 there were about 36 deep borings in the region of southwest New Mexico (Thompson and others, 1978). This drilling resulted mainly from an evaluation of petroleum potential of the Pedrogosa basin which is an extensive area of Paleozoic subsidence in Arizona, New Mexico, and Mexico that accumulated about three kilometers of Paleozoic sedimentary rock (Zeller, 1965; Thompson and others, 1978). Of these drill holes, 25 are close enough to the present seismic sections to provide correlations of velocity to lithology, and to provide an estimate of the errors associated with depth-to-interface interpretations. This information is summarized prior to considering the implications of the seismic sections in detail. The major portion of the report centers around two plates: Plate I shows seismic lines and selected drill hole locations superimposed on gravity contours, and Plate II shows velocitysections with drill hole summaries. These plates provide the foundation for developing inferences on buried lithologic, structural, and mineral resources for the region.

New Mexico↗

USGS2019

The NASA Roadmap to Ocean Worlds

In this article, we summarize the work of the NASA Outer Planets Assessment Group (OPAG) Roadmaps to Ocean Worlds (ROW) group. The aim of this group is to assemble the scientific framework that will guide the exploration of ocean worlds, and to identify and prioritize science objectives for ocean worlds over the next several decades. The overarching goal of an Ocean Worlds exploration program as defined by ROW is to “identify ocean worlds, characterize their oceans, evaluate their habitability, search for life, and ultimately understand any life we find.” The ROW team supports the creation of an exploration program that studies the full spectrum of ocean worlds, that is, not just the exploration of known ocean worlds such as Europa but candidate ocean worlds such as Triton as well. The ROW team finds that the confirmed ocean worlds Enceladus, Titan, and Europa are the highest priority bodies to target in the near term to address ROW goals. Triton is the highest priority candidate ocean world to target in the near term. A major finding of this study is that, to map out a coherent Ocean Worlds Program, significant input is required from studies here on Earth; rigorous Research and Analysis studies are called for to enable some future ocean worlds missions to be thoughtfully planned and undertaken. A second finding is that progress needs to be made in the area of collaborations between Earth ocean scientists and extraterrestrial ocean scientists.

Astrobiology↗

USGS2024

Bringing traits back in the equation: A roadmap to understand species redistribution

Ecological and evolutionary theories have proposed that species traits should be important in mediating species responses to contemporary climate change; yet, empirical evidence has so far provided mixed evidence for the role of behavioral, life history, or ecological characteristics in facilitating or hindering species range shifts. As such, the utility of trait-based approaches to predict species redistribution under climate change has been called into question. We develop the perspective, supported by evidence, that trait variation, if used carefully can have high potential utility, but that past analyses have in many cases failed to identify an explanatory value for traits by not fully embracing the complexity of species range shifts. First, we discuss the relevant theory linking species traits to range shift processes at the leading (expansion) and trailing (contraction) edges of species distributions and highlight the need to clarify the mechanistic basis of trait-based approaches. Second, we provide a brief overview of range shift–trait studies and identify new opportunities for trait integration that consider range-specific processes and intraspecific variability. Third, we explore the circumstances under which environmental and biotic context dependencies are likely to affect our ability to identify the contribution of species traits to range shift processes. Finally, we propose that revealing the role of traits in shaping species redistribution may likely require accounting for methodological variation arising from the range shift estimation process as well as addressing existing functional, geographical, and phylogenetic biases. We provide a series of considerations for more effectively integrating traits as well as extrinsic and methodological factors into species redistribution research. Together, these analytical approaches promise stronger mechanistic and predictive understanding that can help society mitigate and adapt to the effects of climate change on biodiversity.

Global Change Biology↗

USGS2005

Living with a volcano in your backyard: An educator's guide with emphasis on Mount Rainier

Today’s residents, as well as residents of centuries past, consider Mount Rainier “the spiritual and cultural icon of the Pacific Northwest.” As a backdrop for many of the State’s residents, Mount Rainier offers beauty, solace, inspiration, and challenge. The mountain sets the daily mood for thousands of people who gaze at and respect it. There is no mistaking this object of admiration when people smile and remark that, “the mountain is out!” Yet, the origin of Mount Rainier, formed by volcanic processes and now heavily laden with snow and ice, remains an enigma to many admirers. During the 1980s, volcanologists from around the world voted Mount Rainier as one of 17 volcanoes most worthy of additional study because of the hazard potential to large population centers nearby. Subsequent research indicates that Mount Rainier, though quiet since the nineteenth century, is very much an “active volcano” with potential to erupt again and disrupt the life of Pacific Northwest residents. Following days to months or more of warning, Mount Rainier could erupt lava and ash and melt snow and ice to form lahars (volcanic mudflows). Or, Mount Rainier could simply warm up briefly, jolt us from our apathy, and then return to slumber for many more years. Until such time, the mountain is ours to explore. Living with a Volcano in Your Backyard—An Educator’s Guide with Emphasis on Mount Rainier invites educators and their students to learn what scientists are discovering about Mount Rainier’s past, to explore its slopes during this period of quiescence, and to plan future responses to volcanic unrest. Mount Rainier National Park is a unique classroom, rich in resources for observing geologic change. The park staff encourages safe and knowledgeable use by educators and students and their families. The National Park Service and the U.S. Geological Survey’s Volcano Hazards Program (USGS-VHP) support development and publication of this educator’s guide as part of their mission to educate the public about volcanoes. The USGS-VHP studies the dynamics of volcanoes, investigates eruption histories, develops hazard assessments, monitors volcano-related activity, and collaborates with local officials to lower the risk of disruption when volcanoes become restless.

Washington↗

USGS2018

A new high-resolution map of world mountains and an online tool for visualizing and comparing characterizations of global mountain distributions

Answers to the seemingly straightforward questions “what is a mountain?” and “where are the mountains of the world?” are in fact quite complex, and there have been few attempts to map the mountains of the earth in a consistent and rigorous fashion. However, knowing exactly where mountain ecosystems are distributed on the planet is a precursor to conserving them, as called for in Sustainable Development Goals 6 and 15 of the United Nations 2030 Agenda for Sustainable Development. In this article we first compare 3 characterizations of global mountain distributions, including a new, high-resolution (250 m) map of global mountains derived from terrain characteristics. We show how differences in conceptual definition, methodology, and spatial resolution of source data can result in differences in the extent and location of lands classed as mountains. For example, the new 250-m resource documents a larger global mountain extent than previous characterizations, although it excludes plateaus, hilly forelands, and other landforms that are often considered part of mountain areas. We then introduce the Global Mountain Explorer, a new web-based application specifically developed for exploration, visualization, and comparison of these maps. This new open-access tool is an intuitive and versatile resource suitable for a broad range of users and applications.

Mountain Research and Development↗

USGS2020

Lesser prairie-chicken (Tympanuchus pallidicinctus) use of man-made water sources

The lesser prairie-chicken ( Tympanuchus pallidicinctus ) occurs in the semiarid southern Great Plains, a region prone to periods of drought. Researchers generally believe that lesser prairie-chickens are able to satisfy their water requirements through preformed water and metabolic processes, but also know that they experience low survival and reproductive success during periods of drought. We used motion-sensing cameras to assess lesser prairie-chicken visits to man-made free water sources over a 48-month period from March 2009 to February 2013 in west Texas. Our objective was to examine temporal patterns of water use by lesser prairie-chickens, and to explore life history phenology and environmental conditions that may influence the species' use of free water. We documented 1,439 visits to water sources by lesser prairie-chickens. Their use of water sources was high during the winter months (December–February; 92 visits per 100 trap days) but the highest average visit rate to water sources occurred during the lekking-nesting life stage (March–May; 146 visits per 100 trap days). Water use was lower during the brood-rearing stage (June–August; 71 visits per 100 trap days) and lowest during the brood dispersal and independence stage (September–November; 19 visits per 100 trap days). Water use was strongly associated with dew point (P < 0.0001) and temperature (P = 0.0002) but was not associated with precipitation (P = 0.1037). These data indicate life-cycle stage (e.g., lekking-nesting) and reduced availability of preformed water may influence use of free water sources by lesser prairie-chickens. Current climate models predict the region of the study area will experience increases in temperature and decreases in frequency of precipitation. The combined effect of this would be reduced environmental moisture. If the prediction of increasing aridity in the region holds true, man-made water sources may become a tool for conservation of the species.

Texas↗

USGS2015

Incorporating temporal variation in seabird telemetry data: time variant kernel density models

A key component of the Mid-Atlantic Baseline Studies project was tracking the individual movements of focal marine bird species (Red-throated Loon [Gavia stellata], Northern Gannet [Morus bassanus], and Surf Scoter [Melanitta perspicillata]) through the use of satellite telemetry. This element of the project was a collaborative effort with the Department of Energy (DOE), Bureau of Ocean Energy Management (BOEM), the U.S. Fish and Wildlife Service (USFWS), and Sea Duck Joint Venture (SDJV), among other organizations. Satellite telemetry is an effective and informative tool for understanding individual animal movement patterns, allowing researchers to mark an individual once, and thereafter follow the movements of the animal in space and time. Aggregating telemetry data from multiple individuals can provide information about the spatial use and temporal movements of populations. Tracking data is three dimensional, with the first two dimensions, X and Y, ordered along the third dimension, time. GIS software has many capabilities to store, analyze and visualize the location information, but little or no support for visualizing the temporal data, and tools for processing temporal data are lacking. We explored several ways of analyzing the movement patterns using the spatiotemporal data provided by satellite tags. Here, we present the results of one promising method: time-variant kernel density analysis (Keating and Cherry, 2009). The goal of this chapter is to demonstrate new methods in spatial analysis to visualize and interpret tracking data for a large number of individual birds across time in the mid-Atlantic study area and beyond. In this chapter, we placed greater emphasis on analytical methods than on the behavior and ecology of the animals tracked. For more detailed examinations of the ecology and wintering habitat use of the focal species in the midAtlantic, see Chapters 20-22.

Report↗

USGS2022

Ungulate migration in a changing climate—An initial assessment of climate impacts, management priorities, and science needs

Executive Summary Migratory behavior among ungulates in the Western United States occurs in response to changing forage quality and quantity, weather patterns, and predation risk. As snow melts and vegetation green-up begins in late spring and early summer, many migratory ungulates leave their winter range and move to higher elevation summer ranges to access high-quality forage and areas with vegetative cover for protection during fawning. Ungulates remain on these ranges until the fall when increasing snowfall and decreasing temperatures trigger them to migrate back to their lower elevation winter ranges. While researchers have begun to assess the effects of physical barriers such as roads and energy infrastructure on migration, less attention has been paid to understanding how changing climate conditions might affect ungulate movements and range habitats. Does earlier spring green-up make ungulates leave their winter ranges sooner? Do persistent drought conditions reduce the carrying capacity of seasonal range habitats or lead to shifts in migration pathways? These and other questions remain largely unanswered but could have cascading effects on ungulate population dynamics and migratory behavior. In February 2018, the Secretary of the Interior signed Department of the Interior Secretarial Order 3362 (SO3362), “Improving Habitat Quality in Western Big-Game Winter Range and Migration Corridors.” The order, which focuses on elk, mule deer, and pronghorn in 11 Western States, directs the Bureau of Land Management (BLM), the U.S. Fish and Wildlife Service (FWS), the National Park Service (NPS), and the U.S. Geological Survey (USGS) to partner with State wildlife agencies on their priorities and objectives for identifying and conserving ungulate migration corridors and winter-range habitat. The USGS Climate Adaptation Science Centers (CASCs) were established to help managers of the Nation’s fish, wildlife, waters, and lands understand the effects of climate change and adapt to changing conditions. To support the recent Department of the Interior (DOI) emphasis on ungulate migration corridors and winter-range habitat, this report assesses current information on how climate change could affect elk, mule deer, and pronghorn migration. The report synthesizes the drivers of migration, outlines what is known about how climate change might affect these drivers, and summarizes management priorities and science needs related to ungulate migration corridors and range habitat. A review of the literature on ungulate migration shows that the core drivers of spring migration are the timing of spring green-up and snowmelt, and the core driver of fall migration is winter severity. After exploring what is known about how these drivers affect or could be affected by climate change, several pathways through which ungulate migration could be altered were identified: (1) ungulates alter migration timing to better track plant phenology or in response to changes in winter conditions; (2) ungulates change their migration route or distance traveled during migration to accommodate changes in environmental conditions; and (3) ungulate populations that are currently migratory may begin to demonstrate interannual variability in whether they migrate, depending on environmental conditions and density-dependence, and may remain resident for sets of consecutive years. Through discussions with managers, physical barriers to movement such as roads and fences were identified as a core concern. In addition, the primary research needs of States are the acquisition and analysis of data on ungulate movements, to refine delineation of winter range, summer range, and corridors, and to support a better understanding of how ungulates use these habitats. When it comes to understanding climate effects, managers were more concerned with understanding the vulnerability of winter- and summer-range habitats than the vulnerability of migration corridors because of the influence of summer and winter forage on ungulate condition and reproductive success. Managers were also concerned about how forage quality and quantity might change because of stressors such as drought, wildfire, and invasive species and how they might need to alter habitat-treatment strategies as a result. More baseline data are needed before effective projections of ungulate migration, at a West-wide scale under climate change, can be made. These data needs include (1) more clearly defined corridors and seasonal range habitats; (2) a comprehensive understanding of the ecological drivers of migration across ungulate species and populations; and (3) the identification of environmental thresholds for key variables that influence migration, above which ungulates alter migratory behavior. The CASCs have several opportunities to play a role in addressing these needs. The CASCs could initiate projects to identify past and potential future changes and trends in key variables known to affect ungulate migration, such as plant phenology, forage quality, or winter severity. However, it would be difficult to use this information to determine what those trends mean for ungulate migration due to the lack of knowledge about environmental thresholds for ungulates. Additional projects would be required to compare multiple years of movement data with key variables to define thresholds. Once available, information on environmental thresholds could be integrated with projections of key variables to forecast the likelihood that the migration routes or the distance traveled could change—another area in which the CASCs could contribute. A more immediate role for the CASCs would be to carry out synthesis projects. One such project could summarize the “state of the science” on the drivers of ungulate migration. Although there are dozens of population- and location-specific studies on this topic, collating this information could help highlight trends in migration drivers that span species and geographies: a necessary first step toward determining the extent to which migration drivers could be affected by climate change. A second project could focus on what is known about how climate variability and change affect ungulate life-histories, population dynamics, and migration in the Western United States. The goal of this effort could be to identify knowledge clusters and information gaps that require further investigation. Together, these synthesized products could focus future scientific activities on the most pressing issues of ungulate migration and climate change in the Western United States.

Arizona, California, Colorado, Idaho, Montana, New↗

USGS2016

The geochemical atlas of Alaska, 2016

A rich legacy of geochemical data produced since the early 1960s covers the great expanse of Alaska; careful treatment of such data may provide significant and revealing geochemical maps that may be used for landscape geochemistry, mineral resource exploration, and geoenvironmental investigations over large areas. To maximize the spatial density and extent of data coverage for statewide mapping of element distributions, we compiled and integrated analyses of more than 175,000 sediment and soil samples from three major, separate sources: the U.S. Geological Survey, the National Uranium Resource Evaluation program, and the Alaska Division of Geological & Geophysical Surveys geochemical databases. Various types of heterogeneity and deficiencies in these data presented major challenges to our development of coherently integrated datasets for modeling and mapping of element distributions. Researchers from many different organizations and disparate scientific studies collected samples that were analyzed using highly variable methods throughout a time period of more than 50 years, during which many changes in analytical techniques were developed and applied. Despite these challenges, the U.S. Geological Survey has produced a new systematically integrated compilation of sediment and soil geochemical data with an average sample site density of approximately 1 locality per 10 square kilometers (km 2 ) for the entire State of Alaska, although density varies considerably among different areas. From that compilation, we have modeled and mapped the distributions of 68 elements, thus creating an updated geochemical atlas for the State.

Alaska↗

USGS2015

Modeling tidal freshwater marsh sustainability in the Sacramento-San Joaquin Delta under a broad suite of potential future scenarios

In this paper, we report on the adaptation and application of a one-dimensional marsh surface elevation model, the Wetland Accretion Rate Model of Ecosystem Resilience (WARMER), to explore the conditions that lead to sustainable tidal freshwater marshes in the Sacramento–San Joaquin Delta. We defined marsh accretion parameters to encapsulate the range of observed values over historic and modern time-scales based on measurements from four marshes in high and low energy fluvial environments as well as possible future trends in sediment supply and mean sea level. A sensitivity analysis of 450 simulations was conducted encompassing a range of eScholarship provides open access, scholarly publishing services to the University of California and delivers a dynamic research platform to scholars worldwide. porosity values, initial elevations, organic and inorganic matter accumulation rates, and sea-level rise rates. For the range of inputs considered, the magnitude of SLR over the next century was the primary driver of marsh surface elevation change. Sediment supply was the secondary control. More than 84% of the scenarios resulted in sustainable marshes with 88 cm of SLR by 2100, but only 32% and 11% of the scenarios resulted in surviving marshes when SLR was increased to 133 cm and 179 cm, respectively. Marshes situated in high-energy zones were marginally more resilient than those in low-energy zones because of their higher inorganic sediment supply. Overall, the results from this modeling exercise suggest that marshes at the upstream reaches of the Delta—where SLR may be attenuated—and high energy marshes along major channels with high inorganic sediment accumulation rates will be more resilient to global SLR in excess of 88 cm over the next century than their downstream and low-energy counterparts. However, considerable uncertainties exist in the projected rates of sea-level rise and sediment avail-ability. In addition, more research is needed to constrain future rates of aboveground and belowground plant productivity under increased CO<sub>2</sub> concentrations and flooding.

California↗

USGS2023

Pacific coastal and marine science of the U.S. Geological Survey in Santa Cruz, California

Introduction The Pacific Coastal and Marine Science Center is one of three U.S. Geological Survey science centers that serve the mission of the Coastal and Marine Hazards and Resources Program, the primary Federal marine geology and physical science research program focused on the Nation’s coastal and marine landscape. Our portfolio of coastal and marine projects in the Pacific Ocean provides the scientific information necessary to sustainably manage coastal and marine resources, to prepare for natural hazard events such as landslides and tsunamis, and to build resilience in coastal communities vulnerable to the effects of climate change, as well as storms, flooding, and risks to groundwater resources. The Nation’s demand for societally relevant coastal and marine science has never been greater, and we invite you to explore some of our ongoing Pacific Coastal and Marine Science Center activities in these pages.

General Information Product↗

USGS2020

Using advanced population genomics to better understand the relationship between offshore and spawning habitat use for Atlantic Sturgeon

Atlantic Sturgeon ( Acipenser oxyrinchus oxyrinchus ) are a large-bodied anadromous fish that historically supported important fisheries along the east coast of the United States. Following years of overharvest and habitat degradation, populations experienced severe declines. In 2012, the National Marine Fisheries Service listed Atlantic Sturgeon under the Endangered Species Act (ESA; 61 FR 4722). Their listing named five Distinct Population Segments (DPSs), predicated on genetic groups composed of geographically proximate populations. Federal management of Atlantic Sturgeon presents challenges, as sturgeon from each of the five DPSs mix extensively in coastal and marine habitats yet take and recovery progress must be evaluated separately for each unit. Genetic assignment testing based on mitochondrial and microsatellite markers allows individuals to be assigned back to their natal river and DPS. However, this approach is not perfect and some individuals may be incorrectly assigned. Recent advances in genomics offer the potential of a higher resolution approach to genetic assignment testing, and thus may reduce uncertainty associated with assignment testing. In addition, genomics allows a greater number of markers to be examined from across a broader portion of the sturgeon genome, thus may provide an enhanced perspective of population structure for the species, and potentially allow other previously intractable questions to be addressed (Bernatchez et al. 2017, Supple and Shapiro 2018). We used next-generation sequencing to develop a draft genome for Atlantic Sturgeon and identify single nucleotide polymorphisms (SNPs) that could be used to resolve the natal river and DPS of individual Atlantic Sturgeon. We identified 1,210 candidate SNPs within the nuclear genome as well as 49 SNPs within the mitochondrial genome. After filtering and review, we selected 161 nuclear SNPs and 39 mitochondrial SNPs for further testing and evaluation. We used genotyping-in-thousands by sequencing (GT-seq) to simultaneously sequence nuclear SNP loci, mitochondrial SNP loci, and the existing panel of twelve microsatellite loci. This effort required a pilot sequencing run on a single sturgeon sample to test marker amplification and refine primer strengths, followed by a series of sequencing runs to generate baseline data for 288 individuals representing nine populations of Atlantic Sturgeon in four DPSs. Using baseline data from the nine populations, we ran a series of genomic analyses to characterize diversity within and among populations, providing a benchmark for this species using the new SNP markers. Allelic richness was similar for all populations, although there was a general trend of more northern population containing greater levels of allelic richness. Interestingly, we observed linkage disequilibrium among many pairs of loci within many populations. This might be the result of physical linkage but could also suggest these populations are recovering from genetic bottlenecks and/or are effectively small, leading to specific haplotypes to be favored by chance. Pairwise differentiation among populations varied among the populations ( F ST range: 0.010-0.098) and was significantly correlated ( r = 0.771; P < 0.001) to pairwise F ST observed using microsatellite markers). Population clustering and ordination techniques using the new genomic data both support an overall population structure that is similar to the current DPS management units (which were developed primarily based on microsatellite genetic data). Overall, this suggests that existing microsatellite markers and the panel of SNP markers developed in this study provide similar information about the populations structure and ecology of Atlantic Sturgeon. Given the observed differences in allele frequencies among populations, our genomic baseline supports previous assertations that Atlantic Sturgeon show natal homing, despite mixing extensively in marine waters during non-breeding periods. Lower levels of differentiation between populations in the South Atlantic DPS suggest that populations in this region may have greater levels of gene flow relative to their more northerly conspecifics, which has also previously been suggested based on microsatellite data. The observed differentiation among populations provides the necessary foundation for determining the natal river and DPS of Atlantic Sturgeon using assignment testing. We tested the utility of our new genomic baseline for resolving the population and DPS of Atlantic Sturgeon. Our nuclear SNP markers showed utility for identifying the origin of unknown Atlantic Sturgeon samples, as 86.5% were assigned to the correct DPS and 66.3% were assigned to the correct natal river. However, since this study was funded the Conservation Genetics and Genomics Laboratory at Leetown Science Center has made significant improvements to their microsatellite genetic baseline, which now performs more effectively than our new genomic approach (the genetic baseline includes 12 populations and 5 DPSs, and correctly assigns 95.8% of individuals to DPS and 84.9% of individuals to their natal population using 12 microsatellite loci). We conducted an ad hoc exploration of how additional microsatellite or nuclear SNP loci may further improve the accuracy of assignment testing. We found that additional microsatellite markers are likely to result in greater improvements in assignment efficiency than additional nuclear SNPs. However, a much larger number of SNP loci (which if identified could be sequenced using other methods that are now available; e.g., the RAD-capture approach published by Ali et al. 2016) could produce assignment efficiencies that are greater than what is currently feasible using microsatellites. In the absence of further research and development of additional SNP markers for Atlantic Sturgeon (possibly using an approach other than GT-seq), the existing microsatellite loci are the most effective means available to determine the natal river and DPS of Atlantic Sturgeon encountered in offshore waters. Because our new genomic markers were less effective than the existing panel of 12 microsatellite markers, we chose to use the existing microsatellite markers to assign Atlantic Sturgeon captured in another BOEM-funded study (cooperative agreement M16AC00003; Monitoring endangered Atlantic Sturgeon and commercial finfish habitat use offshore New York) following consultation with our project officer. Using this approach, we genotyped and assigned 186 Atlantic Sturgeon captured in coastal waters off the Rockaway Peninsula, New York. The vast majority of these sturgeon were assigned to the New York Bight DPS (94.62%), and most appear to belong to the Hudson River population (87.10%) with smaller contributions from the Delaware River population (7.53%). Smaller contributions (2.15%) were observed from six other populations, including those from the James, York, Kennebec, Ogeechee, and Edisto rivers. Although most of the fish we assigned were assigned to the nearest spawning rivers (Hudson and Delaware), the contributions from distant rivers is consistent with the propensity of this species to move long distances and form mixed stock aggregations along the continental shelf. This finding indicates that spawning populations (and their corresponding DPS) from distant locations may potentially be impacted by offshore activities. In fact, activities in this region of the New York Bight could negatively impact Atlantic Sturgeon population from at least four different DPSs. Genetic or genomic assignment testing remains an essential tool to characterize potential impacts to Atlantic Sturgeon populations and should be applied more broadly to better characterize potential impacts of activities in other locations.

Atlantic Coast↗

USGS2010

Flood risks and the willingness to purchase flood insurance

Computer simulation experiments were conducted to determine the effects of alternative sources of uncertainty on the willingness to pay for flood insurance. Two alternative insurance protection schemes were investigated: coinsurance and fixed coverage. The question investigated here is to what extent does the insurance scheme influence how purchasers respond to flood risks? Floods were assumed to be log normally distributed and the effects on the purchase of insurance of uncertainties in the parameters of the distribution were explored using response surface analysis. Results indicate that fixed coverage insurance provisions shift most of the uncertainty in the physical parameters governing natural disaster occurrences away from the insuree and onto the insurer. The results also show that the form of the damage function has little effect on the demand for flood insurance.

Water Resources Research↗

USGS2022

Estimating species misclassification with occupancy dynamics and encounter rates: A semi-supervised, individual-level approach

1. Large-scale, long-term biodiversity monitoring is essential to conservation, land management, and identifying threats to biodiversity. However, multispecies surveys are prone to various types of observation error, including false positive/negative detection, and misclassification, where a species is thought to have been encountered but not correctly identified. Previous methods assume an imperfect classifier produces species-level classifications, but in practice, particularly with human observers, we may end up with extraspecific classifications including `unknown', morphospecies designations, and taxonomic identifications coarser than species. Disregarding these types of species misclassification in biodiversity monitoring datasets can bias estimates of ecologically important quantities such as demographic ratess, occurrence, and species richness. 2. Here we present a joint classification-occupancy model that accounts for species non-detection and misclassification. Our framework accommodates extinction and colonization dynamics, allows for additional uncertain `morphospecies' designations, and makes use of individual specimens with known species identities in a semi-supervised setting. We compare the performance of our model to a classification-only model that discards information about occupancy and encounter rate. We illustrate our model with an empirical case study of the carabid beetle (Carabidae) community at the National Ecological Observatory Network Niwot Ridge Mountain Research Station, near Boulder, CO, USA. We also use simulations to evaluate model performance through validation metrics where varying fractions of the data are confirmed. 3. The model supported imperfect classifier accuracy and favored certain true species classifications strongly for some morphospecies. The model outperformed (e.g., precision) the reduced model that discarded occupancy information, and these differences were most pronounced for abundant species. 4. Spatial and temporal dynamics from modeled occupancy and encounter rates may inform species misclassification probability, but this idea has not yet been tested. Our statistical framework explores this opportunity, and can be applied to datasets with imperfect species detection and classification, limited verification data, and non-species classifications.

Methods in Ecology and Evolution↗

USGS2002

History and ecology of mangroves in the Dry Tortugas

Dry Tortugas National Park, which includes Bush, Long, Loggerhead, Garden, and Bird Keys, is a cluster of islands and coral reefs approximately 112.9 km (70 miles) west of Key West, Florida ( fig. 1 ). These islands were explored in 1513 by Ponce de León, who named them for the abundance of sea turtles, “tortugas,” and the lack of fresh water in the area. Historically, the Tortugas shoals have been valued as a military outpost, and the area is now additionally recognized as nesting grounds for diverse seabirds. The Dry Tortugas were declared a national treasure and bird sanctuary as early as 1908 and were incorporated into the National Park Service in 1935. These islands have been the setting for the U.S. Geological Survey’s National Wetlands Research Center (NWRC) research into mangroves and their relationship to bird life.

Florida↗

USGS2022

Maintaining wetland ecosystem services in a changing climate

A changing climate is causing challenges for soil and water management in many parts of the world. Current soil management practices need to be redesigned to effectively address present and future fluctuating climates. Soil Hydrology in a Changing Climate explores how soil management practices impact soil hydrological characteristics, and how we can improve our understanding of soil and water management under changing conditions. Soil hydrology includes water infiltration and soil water storage, which are critical for agricultural plant and animal production. With our future climate predicted to include hotter, drier conditions, increases in evapotranspiration as well as fewer, more intense storms, improved soil management and soil hydrology are critical to ensuring our agriculture production can meet human demand. This comprehensive book is a valuable resource for land managers, soil conservationists, researchers and others who wish to understand how different management practices affect soil and water dynamics and how these practices can be adjusted to enhance agricultural sustainability and environmental quality.

Book chapter↗

USGS2020

A GT-seq panel for walleye (Sander vitreus) provides important insights for efficient development and implementation of amplicon panels in non-model organisms

Targeted amplicon sequencing methods, such as genotyping-in-thousands by sequencing (GT-seq), facilitate rapid, accurate, and cost-effective analysis of hundreds of genetic loci in thousands of individuals. Development of GT-seq panels is nontrivial, but studies describing trade-offs associated with different steps of GT-seq panel development are rare. Here, we construct a dual-purpose GT-seq panel for walleye ( Sander vitreus ), discuss trade-offs associated with different development and genotyping approaches, and provide suggestions for researchers constructing their own GT-seq panels. Our GT-seq panel was developed using an ascertainment set consisting of restriction site-associated DNA data from 954 individuals sampled from 23 populations in Minnesota and Wisconsin, USA. We conducted simulations to test the utility of all loci for parentage analysis and genetic stock identification and designed 600 primer pairs to maximize joint accuracy for these analyses. We then performed three rounds of primer optimization to remove loci that overamplified and our final panel consisted of 436 loci. We also explored different approaches for DNA extraction, multiplexed polymerase chain reaction (PCR) amplification, and cleanup steps during the GT-seq process and discovered the following: (i) inexpensive Chelex extractions performed well for genotyping; (ii) the exonuclease I and shrimp alkaline phosphatase (ExoSAP) procedure included in some current protocols did not improve results substantially and was probably unnecessary; and (iii) it was possible to PCR amplify panels separately and combine them prior to adapter ligation. Well-optimized GT-seq panels are valuable resources for conservation genetics and our findings and suggestions should aid in their construction in myriad taxa.

Minnesota, Wisconsin↗

USGS2021

Integrating ecological impacts: Perspectives on drought in the Upper Missouri Headwaters, Montana, United States

Drought is a complex challenge experienced in specific locations through diverse impacts, including ecological impacts. Different professionals involved in drought preparedness and response approach the problem from different points of view, which means they may or may not recognize ecological impacts. This study examines the extent to which interviewees perceive ecological drought in the Upper Missouri Headwaters basin in southwestern Montana. Through semistructured interviews, this research investigates individuals’ perceptions of drought by analyzing how they define drought, how they describe their roles related to drought, and the extent to which they emphasize ecological impacts of drought. Results suggest that while most interviewees have an integrated understanding of drought, they tend to emphasize either ecological or nonecological impacts of drought. This focus was termed their drought orientation. Next, the analysis considers how participants understand exposure to drought. Results indicate that participants view drought as a complex problem driven by both human and natural factors. Last, the paper explores understandings of the available solution space by examining interviewees’ views on adaptive capacity, particularly factors that facilitate or hinder the ability of the Upper Missouri Headwaters region to cope with drought. Participants emphasized that adaptive capacity is both helped and hindered by institutional, cultural, and economic factors, as well as by available information and past resource management practices. Understanding how interviewees perceive the challenges of drought can shape drought preparedness and response, allowing those designing programs to better align their efforts to the perceptions of their target audience.

Montana↗