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EAARL topography-Colonial National Historical Park

These Lidar-derived topography maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, Florida Integrated Science Center (FISC) St. Petersburg, the National Park Service (NPS) Inventory and Monitoring Program, Northeast Coastal and Barrier Network, and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs, barrier islands, and various nearshore coastal environments for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography wthin cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to coastal resource managers.

Virginia↗

Ecological and management implications of climate change induced shifts in phenology of coastal fish and wildlife species in the Northeast CASC region

Climate change is causing species to shift their phenology, or the timing of recurring life events such as migration and reproduction, in variable and complex ways. This can potentially result in mismatches or asynchronies in food and habitat resources that negatively impact individual fitness, population dynamics, and ecosystem function. Numerous studies have evaluated phenological shifts in terrestrial species, particularly birds and plants, yet far fewer evaluations have been conducted for marine animals. This project seeks to improve our understanding of shifts in the timing of seasonal migration, spawning or breeding, and biological development (i.e. life stages present, dominant) of coastal fishes, marine mammals,and migratory shore and seabirds along the U.S Atlantic coast. Ideally the suite of species selected will allow us to compare whether fish, marine mammals, shore and seabird predators are shifting their phenology at different rates than their primary prey and optimal habitat conditions, thus influencing trophic interactions and population dynamics. A comprehensive literature review will be conducted simultaneous to data collection and synthesis to determine what is known, and what knowledge/information/data gaps exist regarding regional phenological responses of coastal species to climate change. Project results will help managers assess the vulnerability of coastal species to climate change by providing information on how they are responding to impacts in the region.

Conference Paper↗

Transboundary fisheries science: Meeting the challenges of inland fisheries management in the 21st century

Managing inland fisheries in the 21st century presents several obstacles, including the need to view fisheries from multiple spatial and temporal scales, which usually involves populations and resources spanning sociopolitical boundaries. Though collaboration is not new to fisheries science, inland aquatic systems have historically been managed at local scales and present different challenges than in marine or large freshwater systems like the Laurentian Great Lakes. Therefore, we outline a flexible strategy that highlights organization, cooperation, analytics, and implementation as building blocks toward effectively addressing transboundary fisheries issues. Additionally, we discuss the use of Bayesian hierarchical models (within the analytical stage), due to their flexibility in dealing with the variability present in data from multiple scales. With growing recognition of both ecological drivers that span spatial and temporal scales and the subsequent need for collaboration to effectively manage heterogeneous resources, we expect implementation of transboundary approaches to become increasingly critical for effective inland fisheries management.

Fisheries↗

Beyond the mangroves: A global synthesis of tidal forested wetland types, drivers and future information opportunities

There is increasing awareness of the global diversity of tidal forested wetlands (TFWs) and their significance in the provision of ecosystem services. These ecosystems, including mangrove forests, tidal freshwater forested wetlands, supratidal forests and transitional forests together span multiple climatic zones, geomorphic settings, and inundation and salinity regimes. We utilise case studies across five continents to demonstrate the state of knowledge among TFWs. Intertidal mangroves are the best-defined of the TFWs thanks to decades of research on their geomorphology, hydrology and ecology across their broad distribution. Non-mangrove forest settings, however, demonstrate more diverse hydrological, biochemical and vegetation conditions. In many cases, non-mangrove forests are situated at upper intertidal or supratidal elevations, where surface waters and groundwater are subject to interactions between tides freshwater inputs. Salinity datasets show variations ranging from tidal freshwater forested wetlands and ‘low-salinity mangroves’ to mesohaline or marine salinities, often with high temporal variability. While the floristic composition of non-mangrove forests vary among biogeographic regions, locally dominant TFW species are commonly distributed beyond the tidal niche into non-tidal wetland and upland forests. This presents challenges for traditional remote sensing approaches to ecosystem mapping, which are mostly lacking for non-mangrove forests. Geomorphic approaches and developments in machine learning offer opportunities to address this.

Preprint↗

EAARL submarine topography: Florida Keys National Marine Sanctuary

This Web site contains 46 Lidar-derived submarine topography maps and GIS files for the Florida Keys National Marine Sanctuary. These Lidar-derived submarine topographic maps were produced as a collaborative effort between the U.S. Geological Survey (USGS) Coastal and Marine Geology Program, FISC St. Petersburg, Florida, the National Oceanic and Atmospheric Administration (NOAA), Remote Sensing Division, the National Park Service (NPS) South Florida/Caribbean Network Inventory and Monitoring Program, and the National Aeronautics and Space Administration (NASA) Wallops Flight Facility. One objective of this research is to create techniques to survey coral reefs and barrier islands for the purposes of geomorphic change studies, habitat mapping, ecological monitoring, change detection, and event assessment. As part of this project, data from an innovative instrument under development at the NASA Wallops Flight Facility, the NASA Experimental Airborne Advanced Research Lidar (EAARL) are being used. This sensor has the potential to make significant contributions in this realm for measuring subaerial and submarine topography within cross-environment surveys. High spectral resolution, water-column correction, and low costs were found to be key factors in providing accurate and affordable imagery to coastal resource managers.

Florida↗

Shallow Groundwater Movement in the Skagit River Delta Area, Skagit County, Washington

Shallow groundwater movement in an area between the lower Skagit River and Puget Sound was characterized by the U.S. Geological Survey to assist Skagit County and the Washington State Department of Ecology with the identification of areas where water withdrawals from existing and new wells could adversely affect streamflow in the Skagit River. The shallow groundwater system consists of alluvial, lahar runout, and recessional outwash deposits composed of sand, gravel, and cobbles, with minor lenses of silt and clay. Upland areas are underlain by glacial till and outwash deposits that show evidence of terrestrial and shallow marine depositional environments. Bedrock exposures are limited to a few upland outcrops in the southwestern part of the study area, and consist of metamorphic, sedimentary, and igneous rocks. Water levels were measured in 47 wells on a quarterly basis (August 2007, November 2007, February 2008, and May 2008). Measurements from 34 wells completed in the shallow groundwater system were used to construct groundwater-level and flow-direction maps and perform a linear-regression analysis to estimate the overall, time averaged shallow groundwater-flow direction and gradient. Groundwater flow in the shallow groundwater system generally moves in a southwestward direction away from the Skagit River and toward the Swinomish Channel and Skagit Bay. Local groundwater flow towards the river was inferred during February 2008 in areas west and southwest of Mount Vernon. Water-level altitudes varied seasonally, however, and generally ranged from less than 3 feet (August 2007) in the west to about 15 feet (May 2008) in the east. The time-averaged, shallow groundwater-flow direction derived from regression analysis, 8.5 deg south of west, was similar to flow directions depicted on the quarterly water-level maps. Seasonal changes in groundwater levels in most wells in the Skagit River Delta follow a typical pattern for shallow wells in western Washington. Water levels rise from October through March, when precipitation is high, and decline from April through September, when precipitation is lower. Groundwater levels in wells along the eastern margin of the study area also are likely influenced by stage on the Skagit River. Water levels in these wells remained elevated through April, and did not seem to begin to decline until the end of May in response to declining river stage. Groundwater levels in a well equipped with a continuous water-level recorder exhibited periodic fluctuations that are characteristic of ocean tides. This well is less than 1 mile east of the tidally influenced Swinomish Channel, and exhibited water-level fluctuations that correspond closely to predicted tidal extremes obtained from a tide gage near La Conner, Washington.

Scientific Investigations Report↗

Tamm review: Postfire landscape management in frequent-fire conifer forests of the southwestern United States

The increasing incidence of wildfires across the southwestern United States (US) is altering the contemporary forest management template within historically frequent-fire conifer forests. An increasing fraction of southwestern conifer forests have recently burned, and many of these burned landscapes contain complex mosaics of surviving forest and severely burned patches without surviving conifer trees. These heterogeneous burned landscapes present unique social and ecological challenges. Severely burned patches can present numerous barriers to successful conifer regeneration, and often contain heavy downed fuels which have cascading effects on future fire behavior and conifer regeneration. Conversely, surviving forest patches are increasingly recognized for their value in postfire reforestation but often are overlooked from a management perspective. Here we present a decision-making framework for landscape-scale management of complex postfire landscapes that allows for adaptation to a warming climate and future fire. We focus specifically on historically frequent-fire forests of the southwestern US but make connections to other forest types and other regions. Our framework depends on a spatially-explicit assessment of the mosaic of conifer forest and severely burned patches in the postfire landscape, evaluates likely vegetation trajectories, and identifies critical decision points to direct vegetation change via manipulations of fuels and live vegetation. This framework includes detailed considerations for postfire fuels management (e.g., edge hardening within live forest patches and repeat burning) and for reforestation (e.g., balancing tradeoffs between intensive and extensive planting strategies, establishing patches of seed trees, spatial planning to optimize reforestation success, and improving nursery capacity). In a future of increasing fire activity in forests where repeated low- to moderate-severity fire is essential to ecosystem resilience, the decision-making framework developed here can easily be integrated with existing postfire management strategies to optimize allocation of limited resources and more actively manage burned landscapes.

Arizona, Colorado, New Mexico, Utah↗

Mineral Resource Assessment of Marine Sand Resources in Cape- and Ridge-Associated Marine Sand Deposits in Three Tracts, New York and New Jersey, United States Atlantic Continental Shelf

Demand is growing in the United States and worldwide for information about the geology of offshore continental shelf regions, the character of the seafloor, and sediments comprising the seafloor and subbottom. Interest in locating sand bodies or high quality deposits that have potential as sources for beach nourishment and ecosystem restoration is especially great in some regions of the country. The Atlantic coast, particularly New York and New Jersey, has been the focus of these studies for the past 40 years with widely varying results. This study is the first attempt at applying probability statistics to modeling Holocene-age cape-and ridge-associated sand deposits and thus focuses on distinct sand body morphology. This modeling technique may have application for other continental shelf regions that have similar geologic character and late Quaternary sea-level transgression history. An estimated volume of 3.9 billion m3 of marine sand resources is predicted in the cape-and ridge-associated marine sand deposits in three representative regions or tracts on the continental shelf offshore of New York and New Jersey. These estimates are taken from probabilistic distributions of sand resources and are produced using deposit models and Monte Carlo Simulation (MCS) techniques. The estimated sand resources presented here are for only three tracts as described below and for Holocene age sand resources contained in cape-and ridge-associated marine sand deposit types within this area. Other areas may qualify as tracts for this deposit type and other deposit types and geologic ages (for example, paleo-stream channels, blanket and outwash deposits, ebb-tide shoals, and lower sea level-stand deltas), which are present on the New Jersey and New York continental shelf area but are not delineated and modeled in this initial evaluation. Admittedly, only a portion of these probable sand resources will ultimately be available and suitable for production, dependent largely on geographic, economic, preemptive use, environmental, geologic and political factors. In addition, offshore sand resources should only be considered if the area is seaward of the active zone of significant nearshore sediment transport, about 10 to 12 m in depth, and in sufficiently shallow water so that sand can be extracted within U.S. dredging equipment limits, currently about 40 m in depth. If the material is to be used for beach nourishment, material must be of an appropriate sediment texture and character (grain size, sorting, shape, and color) to match the native beach and have mineralogical properties important to its use. Extraction of sand can disturb or alter the benthic habitat and seafloor ecology, so these factors and other site-specific effects will need to be evaluated for any intended use. These and other factors are not considered in this report but can be expected to reduce the total net volume of sand resources available for production. The purpose of this report is to describe and present results from a probabilistic mineral modeling technique previously applied to onshore mineral resources. This modeling and assessment procedure is being used for the first time to assess and estimate offshore aggregate resources; this study is part of the U.S. Geological Survey (USGS) Marine Aggregates Resources and Processes Project (http://woodshole.er.usgs.gov/project-pages/aggregates/).

Bulletin↗

Predictive mapping of seabirds, pinnipeds and cetaceans off the Pacific Coast of Washington

About this report This report supports Washington-led marine spatial planning and responsible stewardship of natural and cultural resources by the Olympic Coast National Marine Sanctuary. Washington state agencies and the sanctuary continually seek the best available science to improve management of marine uses and stewardship of resources (Etheridge et al., 2010; Washington Department of Fish and Wildlife, 2015a). This report and associated data provide new, state- and sanctuary-requested information on seabird, pinniped, and cetacean distributions. Through spatial planning, information on species distributions can help to identify high-value conservation areas, minimize adverse effects of ocean uses and mitigate impacts of coastal hazards. Correspondingly, the Washington Department of Fish and Wildlife has already begun to use the maps of predicted relative density presented in this report to identify ecologically important areas off the Pacific Coast of Washington and apply this information to plan for offshore renewable energy development. This is the culmination of three years of work to compile information on seabirds, pinnipeds, and cetaceans, and advance a modeling framework that can integrate data sets and develop accurate predictions of relative density for important species off the Pacific Coast of Washington. Previous reports, which evaluated existing datasets of at-sea observations (Menza et al., 2014; Kracker and Menza, 2015) and presented superseded versions of seabird models (Menza et al., 2015), provided base information for this report. In addition to the maps in this published report, all new seabird, pinniped and cetacean predictions will be made publicly available as digital geospatial data through the National Centers for Environmental Information. This research supports the National Oceanic and Atmospheric Administration (NOAA) Coastal Zone Management Program, a voluntary partnership between the federal government and U.S. coastal and Great Lakes states and territories authorized by the Coastal Zone Management Act (CZMA) of 1972 to address national coastal issues. The act provides the basis for protecting, restoring, and responsibly developing our nation’s diverse coastal communities and resources. To meet the goals of the CZMA, the national program takes a comprehensive approach to coastal resource management – balancing the often competing and occasionally conflicting demands of coastal resource use, economic development, and conservation. A wide range of issues are addressed through the program, including coastal development, water quality, public access, habitat protection, energy facility siting, ocean governance and planning, coastal hazards, and climate change. Accurate maps of seabird and marine mammal distributions are an important tool for making informed management decisions that affect all of these issues.

Washington↗

Northeastern Gulf of Mexico Coastal and Marine Ecosystem Program: Coastal Characterization: an overview and update

The U.S. Geological Surveys Biological Resources Division (BRD) mission is to provide leadership in gathering, analyzing, and disseminating biological information as support for sound management of the Nation's natural resources. Since becoming operational in October of 1996 through the transfer of programs from various bureaus within the Department of the Interior, the BRD, in cooperation with other Federal, State, and local partners, has begun research, inventory and monitoring, information sharing, and technology transfer. Through these activities, the BRD is fostering an understanding of biological systems and their benefits to society, and providing the essential scientific support and technical assistance required for management and policy decisions. The role of BRD' s National Wetlands Research Center (NWRC) in Lafayette, Louisiana, with project offices in Baton Rouge, LA and Gulf Breeze, FL, is to provide leadership in research and development related to the Nation's natural resources for the Southeast. The research focuses on wetlands ecology, animal ecology, and the development and application of spatial analysis techniques for natural resource related studies. Current geographic information system (GIS) technologies in use at NWRC are designed to provide natural resource managers with the on-line data and computerized techniques necessary to make informed decisions. Major GIS activities at NWRC include: compilation and analysis of digital databases for monitoring of natural resources; integration and transfer of databases with existing digital databases from various sources into a comprehensive GIS; and development of multifunctional decision support systems for natural resource managers using these data. NWRC is also an active participant in the National Information Infrastructure (NIT), in particular the National Spatial Data Infrastructure (NSDI) and the National Biological Information Infrastructure (NBTI), which will facilitate the dissemination of research results and other knowledge and information gained from these efforts. This summary and the three summaries that follow provides an overview and update of a four year study entitled, Northeastern Gulf of Mexico Coastal and Marine Ecosystem Program: Coastal Characterization.

Minerals Management Service↗

Ecology of juvenile hawksbills ( Eretmochelys imbricata ) at Buck Island Reef National Monument, US Virgin Islands

Surveys of juvenile hawksbills around Buck Island Reef National Monument, US Virgin Islands from 1994 to 1999 revealed distributional patterns and resulted in a total of 75 individual hawksbill captures from all years; turtles ranged from 23.2 to 77.7 cm curved carapace length (CCL; mean 42.1 ± 12.3 cm SD). Juveniles concentrated where Zoanthid cover was highest. Length of time between recaptures, or presumed minimum site residency, ranged from 59 to 1,396 days (mean 620.8 ± 402.4 days SD). Growth rates for 23 juveniles ranged from 0.0 to 9.5 cm year −1 (mean 4.1 ± 2.4 cm year −1 SD). Annual mean growth rates were non-monotonic, with the largest mean growth rate occurring in the 30–39 cm CCL size class. Gastric lavages indicated that Zoanthids were the primary food source for hawksbills. These results contribute to our understanding of juvenile hawksbill ecology and serve as a baseline for future studies or inventories of hawksbills in the Caribbean.

Buck Island↗

Environmental correlates of temporary emigration for female Weddell seals and consequences for recruitment

In colonial-breeding species, prebreeders often emigrate temporarily from natal reproductive colonies then subsequently return for one or more years before producing young. Variation in attendance–nonattendance patterns can have implications for subsequent recruitment. We used open robust-design multistate models and 28 years of encounter data for prebreeding female Weddell seals ( Leptonychotes weddellii [Lesson]) to evaluate hypotheses about (1) the relationships of temporary emigration (TE) probabilities to environmental and population size covariates and (2) motivations for attendance and consequences of nonattendance for subsequent probability of recruitment to the breeding population. TE probabilities were density dependent (βˆ BPOP = 0.66, = 0.17; estimated effects [β] and standard errors of population size in the previous year) and increased when the fast-ice edge was distant from the breeding colonies (βˆ DIST = 0.75, = 0.04; estimated effects and standard errors of distance to the sea-ice edge in the current year on TE probability in the current year) and were strongly age and state dependent. These results suggest that trade-offs between potential benefits and costs of colony attendance vary annually and might influence motivation to attend colonies. Recruitment probabilities were greatest for seals that consistently attended colonies in two or more years (e.g., = 0.56, SD = 0.17) and lowest for seals that never or inconsistently attended prior to recruitment (e.g., = 0.32, SD = 0.15), where denotes the mean recruitment probability (over all years) for 10-year-old seals for the specified prebreeder state. In colonial-breeding seabirds, repeated colony attendance increases subsequent probability of recruitment to the adult breeding population; our results suggest similar implications for a marine mammal and are consistent with the hypothesis that prebreeders were motivated to attend reproductive colonies to gain reproductive skills or perhaps to optimally synchronize estrus through close association with mature breeding females.

Ecology↗

St. Petersburg Coastal and Marine Science Center coral reef research

The U.S. Geological Survey (USGS) Coral Reef Ecosystem STudies (CREST) Project specifically addresses priorities identified in the 'Facing tomorrow's challenges' U.S. Geological Survey science in the decade 2007-2017' document (USGS, 2007). Research includes a blend of historical, monitoring, and process studies aimed at improving our understanding of the development, current status and function, as well as likely future changes in coral ecosystems. Topics such as habitat characterization and distribution, coral disease, and trends in biogenic calcification are major focus areas. We seek to increase the understanding of reef structure, ecological integrity, and responses to global change.

Fact Sheet↗

Land-margin ecosystem hydrologic data for the coastal Everglades, Florida, water years 1996-2012

Mangrove forests and salt marshes dominate the landscape of the coastal Everglades (Odum and McIvor, 1990). However, the ecological effects from potential sea-level rise and increased water flows from planned freshwater Everglades restoration on these coastal systems are poorly understood. The National Park Service (NPS) proposed the South Florida Global Climate Change Project (SOFL-GCC) in 1990 to evaluate climate change and the effect from rising sea levels on the coastal Everglades, particularly at the marsh/mangrove interface or ecotone (Soukup and others, 1990). A primary objective of SOFL-GCC project was to monitor and synthesize the hydrodynamics of the coastal Everglades from the upstream freshwater marsh to the downstream estuary mangrove. Two related hypotheses were set forward (Nuttle and Cosby, 1993): 1. There exists hydrologic conditions (tide, local rainfall, and upstream water deliveries), which characterize the location of the marsh/mangrove ecotone along the marine and terrestrial hydrologic gradient; and 2. The marsh/mangrove ecotone is sensitive to fluctuations in sea level and freshwater inflow from inland areas. Hydrologic monitoring of the SOFL-GCC network began in 1995 after startup delays from Hurricane Andrew (August 1992) and organizational transfers from the NPS to the National Biological Survey (October 1993) and the merger with the U.S. Geological Survey (USGS) Biological Research Division in 1996 (Smith, 2004). As the SOFL-GCC project progressed, concern by environmental scientists and land managers over how the diversion of water from Everglades National Park would affect the restoration of the greater Everglades ecosystem. Everglades restoration scenarios were based on hydrodynamic models, none of which included the coastal zone (Fennema and others, 1994). Modeling efforts were expanded to include the Everglades coastal zone (Schaffranek and others, 2001) with SOFL-GCC hydrologic data assisting the ecological modeling needs. In 2002, as a response for a more interdisciplinary science approach to understanding the coastal Everglades ecological system, the SOFL-GCC hydrology project was integrated into the “Dynamics of Land-Margin Ecosystems: Historical Change, Hydrology, Vegetation, Sediment, and Climate” study (Smith and others, 2002). Data from the ongoing study has been useful in providing an empirical hydrologic baseline for the greater Everglades ecosystem restoration science and management needs. The hydrology network consisted of 13 hydrologic gaging stations installed in the southwestern coastal region of Everglades National Park along three transects: Shark River (Shark or SH) transect, Lostmans River (Lostmans or LO) transect, and Chatham River (Chatham or CH) transect (fig. 1). There were five paired surface-water/groundwater gaging stations on the Shark transect (SH1, SH2, SH3, SH4, and SH5) and one stage gaging station (BSC) in the Big Sable Creek; four paired surface-water/groundwater gaging stations on the Lostmans transect (LO1, LO2, LO3, and LO4); and three paired surface-water/groundwater gaging stations on the Chatham transect (CH1, CH2, and CH3). Both surface-water and groundwater levels, salinities, and temperatures were monitored at the paired gaging stations. Rainfall was recorded at marsh and open canopy gaging stations. This report details the study introduction, method, and description of data collected, which are accessible through the final instantaneous hydrologic dataset stored in the USGS South Florida Information Access (SOFIA) South Florida Hydrology Database website, http://sofia.usgs.gov/exchange/sfl_hydro_data/location.html#brdlandmargin .

Florida↗

Impact of Late Holocene climate variability and anthropogenic activities on Biscayne Bay (Florida, U.S.A.): Evidence from diatoms

Shallow marine ecosystems are experiencing significant environmental alterations as a result of changing climate and increasing human activities along coasts. Intensive urbanization of the southeast Florida coast and intensification of climate change over the last few centuries changed the character of coastal ecosystems in the semi-enclosed Biscayne Bay, Florida. In order to develop management policies for the Bay, it is vital to obtain reliable scientific evidence of past ecological conditions. The long-term records of subfossil diatoms obtained from No Name Bank and Featherbed Bank in the Central Biscayne Bay, and from the Card Sound Bank in the neighboring Card Sound, were used to study the magnitude of the environmental change caused by climate variability and water management over the last ~ 600 yr. Analyses of these records revealed that the major shifts in the diatom assemblage structures at No Name Bank occurred in 1956, at Featherbed Bank in 1966, and at Card Sound Bank in 1957. Smaller magnitude shifts were also recorded at Featherbed Bank in 1893, 1942, 1974 and 1983. Most of these changes coincided with severe drought periods that developed during the cold phases of El Niño Southern Oscillation (ENSO), Atlantic Multidecadal Oscillation (AMO) and Pacific Decadal Oscillation (PDO), or when AMO was in warm phase and PDO was in the cold phase. Only the 1983 change coincided with an unusually wet period that developed during the warm phases of ENSO and PDO. Quantitative reconstructions of salinity using the weighted averaging partial least squares (WA-PLS) diatom-based salinity model revealed a gradual increase in salinity at the three coring locations over the last ~ 600 yr, which was primarily caused by continuously rising sea level and in the last several decades also by the reduction of the amount of freshwater inflow from the mainland. Concentration of sediment total nitrogen (TN), total phosphorus (TP) and total organic carbon (TOC) increased in the second half of the 20th century, which coincided with the construction of canals, landfills, marinas and water treatment plants along the western margin of Biscayne Bay. Increased magnitude and rate of the diatom assemblage restructuring in the mid- and late-1900s, suggest that large environmental changes are occurring more rapidly now than in the past.

Florida↗

Southeastern freshwater fishes

North America has the richest fauna of temperate freshwater fishes in the world, with about 800 native species in the waters of Canada and the United States. The center of this diversity is in the southeastern United States, where as many as 500 species may exist (62% of the continental fauna north of Mexico). Many coastal marine species also enter fresh waters of the Southeast, and at least 34 foreign fish species are established in the region. Although freshwater fishes of the United States are better studied than any fish fauna of comparable scope in the world (Lee et al. 1980; Hocutt and Wiley 1986; Matthews and Heins 1987; Page and Burr 1991; Mayden 1992), large gaps exist in scientific knowledge about the biology and ecology of most species. New species are still being discovered, and the taxonomy of other species is being refined. Seriously declining populations of freshwater fishes in the United States concern the scientific community (Deacon et al. 1979; Williams et al. 1989; Moyle and Leidy 1992; Warren and Burr 1994). This article briefly summarizes the current conservation status of southeastern freshwater fishes; the Southeast is emphasized because of its important fish biodiversity and to focus attention on the growing problem of adverse human impacts on the region's aquatic habitats (Mount 1986; Burkhead and Jenkins 1991; Etnier and Starnes 1991; Warren and Burr 1994).

Book chapter↗

Assessing the relationship between Section 404 and wetland losses: a feasibility study

The primary objective of the Clean Water Act of 1977 (33 U.S.C. 1251) is to restore and maintain the physical, chemical, and biological integrity of the Nation's waters. Section 404 of the Act regulates the discharge of dredged or fill materials into wetlands and represents the primary Federal authority for regulation of wetland alterations. Since its inception, the Section 404 program has been controversial in regard to the extent to which it was intended to provide wetlands regulation. Section 404 requires those who wish to discharge dredged or fill material into waters of the United States, which include many wetlands, to first obtain a Federal permit. The Environmental Protection Agency (EPA) has overall responsibility for administration of the Section 404 program and promulgates guidelines that must be followed in issuing permits. In addition, EPA has the final authority to prohibit specific discharges if the environmental impacts are unacceptable. The U.S. Army Corps of Engineers (Corps) issues Section 404 permits, which can be of two types. Individual Permits are issued following case-by-case reviews of proposed discharges. General Permits, which can be either nationwide or regional in scope, are authorized by the Corps for categories of activities that are similar in nature and that have only minimal individual and cumulative adverse environmental impacts. EPA, the National Marine Fisheries Service (NMFS), the Fish and Wildlife Service (Service), and State natural resource agencies review and comment on permit applications and offer recommendations on appropriate mitigation measures. Although comments from the Service and other natural resource agencies are advisory in nature (EPA's veto authority excepted), they can serve as the basis for modifying, conditioning, or denying a Section 404 permit. In 1986, in a survey conducted by the National Ecology Research Center, Service personnel indicated interest in additional information concerning both wetland trends and the impacts of activities authorized by the Corps under Section 404 (Roelle 1986). Although there is some information concerning wetland losses for certain geographic areas and for the Nation as a whole (Frayer et al. 1983; Tiner 1984), there appears to be little information on how these losses relate to the Section 404 permitting process. The primary objective of this study was to determine the feasibility of estimating wetland losses in relationship to Individual and General Permits issued under Section 404. A secondary objective was to assemble data on acceptance and implementation of specific mitigation recommendations offered by the Service and other natural resource agencies in connection with development activities on wetlands examined. At present, 26 categories of Nationwide permits have been authorized by the Corps. Nationwide permit 26 was of particular interest in this study because it specifically authorizes discharges into wetlands under certain circumstances (see Figure 1 and related text for a more complete discussion of circumstances under which Nationwide Permit 26 is applicable). All subsequent references to Nationwide or General permits pertain to Nationwide Permit 26.

Report↗

Nearshore sediment monitoring for the Stormwater Action Monitoring (SAM) Program, Puget Sound, western Washington

Chemicals such as metals and organics (polychlorinated biphenyl [PCBs], polybrominated diphenyl ethers [PBDEs], polycyclic aromatic hydrocarbons [PAHs], and phthalates) continue to enter Puget Sound, western Washington, from point sources (such as industrial and municipal outfalls) and combined sewer outfalls and non-point sources (such as stormwater runoff). Runoff during storm events has been identified as a major source of contamination entering Puget Sound and has been implicated in the degradation of nearshore habitats and biota. Metals, organic chemicals, and other pollutants are known to accumulate in sediments such as those present along the shoreline of Puget Sound. In addition to chemical contaminants, small plastic particles (known as microplastics), found in marine waters of Puget Sound and suspected of being in aquatic sediments, are a potential concern because they can be ingested by animals and are suspected of transporting sorbed chemicals such as PCBs and metals. The Stormwater Work Group of Puget Sound (SWG) (composed of State and municipal stormwater permittees, and other stakeholders) developed a strategy to address sediment conditions in the nearshore environment of Puget Sound. As part of this strategy, the SWG developed a regional stormwater monitoring strategy designed to inform monitoring requirements in National Pollutant Discharge Elimination System (NPDES) stormwater permits issued by the Washington State Department of Ecology (Ecology). The monitoring program is referred to as the Stormwater Action Monitoring (SAM). The overall focus of the work described in this report is to address one of the goals of SAM, which is to characterize the status, spatial extent, and quality of Puget Sound sediment chemicals in the nearshore urban areas. The nearshore urban areas are defined as areas parallel to established Urban Growth Areas (UGAs) using a spatially balanced probabilistic Generalized Random Tessellation Stratified (GRTS) sampling design. One of the benefits of the GRTS sampling design used for this study is that it allows one to efficiently extrapolate from a relatively small number of sampled nearshore sites to the entire nearshore shoreline within the 2011 defined UGA boundaries of Puget Sound. In addition to characterizing nearshore sediment chemical concentrations, this study also characterized the abundance of microplastics in the nearshore sediment. A total of 41 randomly selected sites were sampled throughout Puget Sound in summer and early autumn of 2016. All sampling sites were located at 6 feet below the Mean Lower Low Water line. The top 2–3 centimeters of sediment were collected using a boat-mounted, pre-cleaned stainless-steel box corer. All chemical samples were sieved to 2 millimeters and placed in appropriate containers for chemical analysis for PCBs, PBDEs, PAHs, phthalates, metals, total organic carbon, and grain size. Pre-sieved sediment samples were stored in glass containers for microplastic analysis. Nearshore sediment chemical concentrations were summarized using numerous statistical approaches to examine the minimum, mean, and maximum concentrations for each of the compounds analyzed and to compare the results to criteria and other nearshore and marine sediment studies. The GRTS sampling design also allowed the authors to assess the percentage of the UGA nearshore environment that did not meet established standards or criteria for each chemical analyzed. Additionally, regression and machine learning statistical analyses were used to examine relations between measured chemical concentrations, and land cover and geologic features at multiple scales within the watersheds adjacent to sampling sites. The influence of marine hydrodynamic factors on nearshore sediment chemical concentrations was statistically evaluated with nonparametric methods by assigning each sampling site to one of five nearshore drift cell types based on its location. The Puget Sound shoreline can be divided into segments, referred to as drift cells, based on the movement of sediment along the shore by waves. Each drift cell type has a unique influence on nearshore sediment transport. The nearshore sediment chemical concentrations for organics and metals generally were low, and in most cases less than Washington State criteria. The concentrations of some PAHs were greater than the criteria, but these exceedances were limited to one or two sites. The results of the probabilistic study design determined that, for the PAHs examined, 96 percent or more of the 1,344 km of shoreline represented by this study had concentrations less than any established criteria. For the remaining organics (PCBs and PBDEs), the probabilistic study design indicates that more than 98 percent of shoreline examined had concentrations less than criteria or proposed standards. For the metals, the results of the study indicate that 100 percent of the nearshore sediment had concentrations less than the criteria. The relations between sediment organic and metal concentrations, and adjacent watershed land cover and the particle size of the samples, were determined to be weakly related. Although weakly related, the particle size of the sediment in a sample typically explained more of the variation in metal concentrations than organics. While the measured watershed attributes adjacent to the sampling sites and sediment size of the samples were weakly related to chemical concentrations, they were significantly related to unique drift cells along the shoreline of Puget Sound known as drift cells. Each drift cell represents a long-term directional transport of sediment from its source to its depositional zone. Sediment chemical concentrations were significantly higher in drift cells with limited sediment movement compared to those with higher sediment transport energy. Microplastics in the nearshore sediment ranged from 0.02 to 0.65 pieces per gram of sediment, with a mean of 0.19 pieces per gram of sediment, and were dominated by small fibers (355–1,000 micrometers). Like chemical concentrations, microplastics concentrations in the nearshore sediment were poorly related to watershed land cover. Although not significantly different, microplastics concentrations generally were higher in the low energy drift cells compared to the high energy drift cells. The results of this study provide a statistically valid status assessment of current nearshore sediment chemical conditions throughout Puget Sound in those areas adjacent to defined UGAs. In addition to the study findings of relatively low concentrations of PCBs, PBDEs, PAHs, phthalates, and metals, the study design provides a statistically valid tool for evaluating changes in these compounds over time if future nearshore sediment assessments are done. Furthermore, the assessment of microplastic abundance represents the first study of its kind that can be used as a benchmark for future evaluations. The results of this study will help inform Ecology in the implementation of monitoring requirements as part of its NPDES stormwater permitting process.

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