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Fort Collins Science Center: 2006 Accomplishments

In Fiscal Year 2006 (FY06), the U.S. Geological Survey (USGS) Fort Collins Science Center (FORT) continued research vital to U.S. Department of the Interior (DOI) science and management needs and associated USGS programmatic goals. FORT work also supported the science needs of other governmental departments and agencies as well as private cooperators. Specifically, FORT scientific research and technical assistance focused on client and partner agency needs and goals in the areas of biological information management, fisheries and aquatic systems, invasive species, status and trends of biological resources, terrestrial ecosystems, and wildlife resources. Highlights of FORT project accomplishments are described below under the USGS science program area with which each task is most closely associated.2 The work of FORT’s five branches (in 2006: Aquatic Systems and Technology Applications, Ecosystem Dynamics, Invasive Species Science, Policy Analysis and Science Assistance, and Species and Habitats of Federal Interest) often involves major partnerships with other agencies or cooperation with other USGS disciplines (Geology, Geography, Water Resources).

Open-File Report↗

Anthropogenic impacts on American eel demographics in Hudson River tributaries, New York

Populations of American eel Anguilla rostrata along the eastern coast of North America have declined drastically for largely unknown reasons. We examined the population dynamics of American eels in six tributaries of the Hudson River, New York, to quantify their distribution and the impacts of anthropogenic stressors. With up to 155 American eels per 100 m2, tributary densities are greater than those within the main stem of the Hudson River and are among the highest reported anywhere. The predominance of small American eels (<200 mm) and wide range of ages (from young-of-year glass eels to 24-year-old yellow eels) suggest that tributaries are an important nursery area for immature American eels. However, upstream of natural and artificial barriers, American eel densities were reduced by at least a factor of 10 and condition, as measured by mass, was significantly lower. Significantly lower American eel condition was also found with increasing riparian urbanization. Density-dependent growth limitations below barriers are suggested by increased growth rates above the first tributary barrier. We suggest that (1) tributaries are important habitat for the conservation of American eels and (2) mitigation of anthropogenic stressors is vital for complete utilization of available habitat and conservation of the species. ?? Copyright by the American Fisheries Society 2007.

Transactions of the American Fisheries Society↗

Kelp forest monitoring at Naval Base Ventura County, San Nicolas Island, California: Fall 2018 and Spring 2019, fifth annual report

Introduction Kelp forests and rocky reefs are among the most recognized marine ecosystems and provide the primary habitat for several species of fishes, invertebrates, and algal assemblages (Stephens and others, 2006). In addition, kelp forests have been shown to be important carbon dioxide sinks (Wilmers and others, 2012) and are an important source of nearshore marine primary production (Duggins and others, 1989). These highly dynamic ecosystems are extremely variable, and both top-down and bottom-up ecological controls drive this rich trophic environment. Giant kelp ( Macrocystis pyrifera ) forests and the species that inhabit these ecosystems are influenced by several environmental conditions, such as wave exposure, water temperature, water clarity, bottom depth and composition, species composition, and the density of kelp and other algal assemblages (Schiel and Foster, 2015). However, in addition to “normal” variability, kelp forests can undergo extreme regime shifts from kelp canopy forested areas to barrens characterized by high densities of urchins and encrusting coralline algae (Harrold and Reed, 1985). San Nicolas Island (SNI), outermost of the California Channel Islands, is home to a diverse group of terrestrial and marine organisms and includes kelp bed and rocky reef habitats ( fig. 1 ). The SNI kelp forests not only provide food and shelter for fishes and invertebrates within the habitat, but also they support higher trophic level consumers such as marine birds and several marine mammal species including the southern sea otter ( Enhydra lutris nereis) , a major predator on sea urchins and other marine invertebrates. Owing to concern about the vulnerability of the California population, the U.S. Fish and Wildlife Service (USFWS) translocated 140 southern sea otters from the central California coast to SNI between 1987 and 1990. Although only approximately 14 translocated otters are thought to have remained at SNI (U.S. Fish and Wildlife Service, 2012), their population at the island has increased and is currently greater than 120 individuals (Hatfield and others, 2019). Sea otters are a natural part of the kelp forest ecosystem, but their presence has implications for community dynamics as they repopulate a region from which they were extirpated in the 19th century. At SNI, sea otters have been concentrated mostly around the west end of the island, with some use of the south side and very little, but expanding, use of the northeast side. An ecosystem shift from urchin dominated to kelp dominated, that occurred at a site at the west end of the island in the early 2000s, though initiated by sea urchin disease, was likely facilitated to some degree by sea otter foraging (Kenner and Tinker, 2018). These ecosystems also are the target of many fisheries, including urchin and lobster. Urchin fisheries, which target the larger red sea urchin, may release the smaller but more mobile purple sea urchin from competitive control (Dayton and others, 1998). Lobster fisheries may release purple sea urchins from predatory control (Lafferty, 2004). Owing to the distance from the mainland, however, SNI kelp forests and reefs have been somewhat protected from the degree of harvest and other anthropogenic impacts experienced by the southern California mainland. Invasive species are another issue, and there are a few invasive subtidal macroalgae of concern in southern California waters. Although the brown alga Sargassum muticum has been established at the island for decades, S. horneri has only recently been seen at SNI and, so far, the invasive kelp Undaria pinnatifida and the green alga Caulerpa taxifolia have not been observed there. Sargassum horneri , in particular, has demonstrated a capability to outcompete native kelps at some of the other Channel Islands but it is unclear what indirect effects it may have on community structure (Marks and others, 2015). Because the surrounding kelp forests fall within the management boundary of the SNI Integrated Natural Resources Management Plan (INRMP; U.S. Navy, 2015), USGS works with the Navy to provide surveys of this ecologically important ecosystem that inform natural resource managers of trends in the population abundance of particular species. In addition, long-term surveys allow for an understanding of potential changes in species diversity and community composition as a result of trophic or other interactions. The U.S. Geological Survey (USGS) implemented a kelp forest monitoring program for the U.S. Navy at San Nicolas Island in 2014, building on sites and methods established by USFWS scientists in 1980 ( appendix 1 ). This report focuses on data collected during sampling expeditions to these sites in fall 2018 (October 2–5) and spring 2019 (April 3–6). Together they will be herein referred to as year 5 because, although the trips were made in different calendar years, they were approximately 6 months apart and were conducted under the fifth year of this contract. The previous sampling year (fall 2017 and spring 2018) is referred to as year 4. The year 5 data are compared with data collected during eight trips from fall 2014 through spring 2018. Differences in counts between these expeditions can result from seasonal factors, stochastic variation, or sampling error, but temporal comparison can reveal population trends. Where appropriate, long-term data collected during the 33 years prior to the implementation of these slightly revised protocols will be presented in order to lend some context to the observations reported here. Genus and species names used in this report are those currently recognized as valid in the Integrated Taxonomic Information System (ITIS.gov). Upon first use, the name recognized as valid by the World Register of Marine Species (WoRMS; marinespecies.org) is shown in brackets if different. The exception is Sargassum horneri which does not show up in any discernable form in ITIS.gov.

California↗

Cooperative Fish and Wildlife Research Units Program—2017 year in review

The Cooperative Fish and Wildlife Research Units Program was involved in a number of notable events during 2017, many concerning our personnel. Dr. Barry Grand left his position as Leader of the Alabama Cooperative Fish and Wildlife Research Unit to become the Cooperative Units Program Supervisor for the South, replacing Dr. Kevin Whalen who took over as Supervisor for the West. We welcomed Dr. Sarah Converse who left the Patuxent Wildlife Research Center to become Leader of the Washington Cooperative Fish and Wildlife Research Unit. Dr. Amanda Rosenberger joined the Tennessee Cooperative Fishery Research Unit as Assistant Leader, transferring from the Missouri Cooperative Unit. Dr. Scott Carleton left his position as Assistant Unit Leader in New Mexico to become Chief of the Region 2 Migratory Bird Program of the U.S. Fish and Wildlife Service. We said farewell to many colleagues who retired. Their departure is bittersweet as we wish them health, happiness, and wellness in retirement. We will miss their companionship and the extraordinary contributions they have made to the Cooperative Fish and Wildlife Research Units Program and conservation. The Cooperative Fish and Wildlife Research Units Program has a record high number of vacant scientist positions due to a combination of retirements and base funding short-falls. These issues are affecting our ability to meet cooperator needs. Yet, we remain highly productive. For example, this year we released a report ( https://doi.org/10.3133/cir1427 ) containing abstracts of nearly 600 of our research projects, covering thematic areas ranging from advanced technologies to wildlife diseases. We provided highly competent, trained scientists and natural resource managers for our cooperators’ workforce. We delivered technical training and guidance to professional practitioners. We provided critical information to cooperators for decisions on species status assessments and management of species of greatest conservation need. This year we had an active presence at major national meetings, including the North American Wildlife and Natural Resources Conference where we co-sponsored a workshop on continuing education as a means to bridge the gap between science and management. During the coming year, with support from the U.S. Geological Survey and our cooperators, we intend to reduce the number of vacancies in the program. It will take time and active support of our cooperators to get back to full strength, but I am committed to this goal and encouraged by the resolve of our partners. We look forward to an even more productive year in 2018!

Circular↗

Urban development results in stressors that degrade stream ecosystems

In 2003, eighty-three percent of Americans lived in metropolitan areas, and considerable population increases are predicted within the next 50 years. Nowhere are the environmental changes associated with urban development more evident than in urban streams. Contaminants, habitat destruction, and increasing streamflow flashiness resulting from urban development have been associated with the disruption of biological communities, particularly the loss of sensitive aquatic biota. Every stream is connected downstream to other water bodies, and inputs of contaminants and (or) sediments to streams can cause degradation downstream with adverse effects on biological communities and on economically valuable resources, such as fisheries and tourism. Understanding how algal, invertebrate, and fish communities respond to physical and chemical stressors associated with urban development can provide important clues on how multiple stressors may be managed to protect stream health as a watershed becomes increasingly urbanized. This fact sheet highlights selected findings of a comprehensive assessment by the National Water-Quality Assessment Program of the U.S. Geological Survey (USGS) of the effects of urban development on stream ecosystems in nine metropolitan study areas.

Fact Sheet↗

History of fish toxicants in the United States

Many bodies of water have been overrun with fish species that are undesirable for the well-being of endemic aquatic biota and are of little or no interest to anglers. This situation has resulted from the transplanting of fish, creation of new waters, increasing fishing pressure and changing water quality. Although as many as 30 toxicants have been tried, only about 30 major piscicides have been used in rehabilitation programs to remove the unwanted species. Explicit knowledge of the mode of action of toxicants in the environment and improvements in fish farming, have permitted fishery managers to reduce the amount of control chemical that is applied to obtain a desired result. The number and volume of waters being reclaimed have increased, but this trend may change soon because environmental laws involving the use of registered pesticides are becoming more restrictive. Registration research has established the safety of some fish toxicants but has eliminated others. Only four piscicides are presently registered (or nonfood use application: antimycin and rotenone as general fish toxicants and 3-trifluoromethyl-4-nitrophenol (TFM) and Bayluscide as selective lampricides.

Special Publication↗

Framework for the development of the Columbia River mainstem fish tissue and water quality monitoring program - Bonneville Dam to Canadian border

The Columbia River provides important cultural, economic, and ecological services to a significant portion of the United States. Anadromous and resident fish species and other wildlife are integrated into the cultural traditions of all Tribes in the Columbia River Basin. Salmon, lamprey, sturgeon, and resident fish are an integral part of Tribal religion, culture, and physical sustenance. Despite concerns about the effect of contaminants on the aquatic ecosystem, the disproportionate effects of contaminants on members of Tribal sovereignties, and the known effects of contaminants on species protected under the Endangered Species Act, efforts to address toxic chemical pollution in the Columbia River have been limited. The lack of a dedicated contaminant monitoring program impedes evaluation and decision making regarding the health of the Columbia River ecosystem, as well as human health for Tribal members and others that consume fish and other biota from the Columbia River. The purpose of this framework is to provide guidance for the development of a long-term program (Program) that provides the basis for assessing the status and trends of contaminants in fish, sediment, water, and invertebrates along the 962-kilometer length of the Columbia River from the Bonneville Dam upriver to the Canadian Border (Figure ES1). This framework will focus on four persistent and bioaccumulative classes of toxic contaminants: • Mercury • Polychlorinated biphenyls (PCBs) • Dichlorodiphenyltrichloroethane (DDT) • Polybrominated diphenyl ethers (PBDEs) Media of interest in this framework include anadromous and resident fish, sediment, invertebrates, biofilm, and surface water. Future consideration of additional contaminants could include pesticides, per or poly-fluoroalkyl substances, 6PPD-quinone, and contaminants of emerging concern (CECs), which comprises a diverse group of anthropogenic chemicals that include thousands of pharmaceuticals, hormones, illicit drugs, new pesticides, personal care products, flame retardants, artificial sweeteners, perfluorinated compounds, disinfection byproducts, ultraviolet filters, and other industrial chemicals. This framework includes the vision, goals, and objectives for the Program. The vision for the Program is that it will provide the basis for assessing the status and trends of contaminants in the Columbia River to guide ecosystem recovery resulting in clean, healthy fish for current and future generations . The goals of the Program are to 1) conduct long-term monitoring to assess the spatial and temporal status and trends of toxics in fish, water, sediment, and other potential media in the Columbia River mainstem, from Bonneville Dam to the Canadian Border in perpetuity, 2) stimulate conversion of science into action by providing information to facilitate future decision making that improves ecosystem function and reduces contaminants in all levels of the food chain, and 3) adaptively manage the Program to address new key questions, incorporate new and emerging science advancements, and respond to community information needs. To facilitate achieving these goals, this framework provides details on technical planning; community outreach and engagement; and adaptive management to promote understanding and improve future decision making over the long-term, including updating the Program with new and emerging science and community needs. Additionally, data associated with the Program will be made available to the public through the EPA Water Quality Exchange (https://www.epa.gov/waterdata/water-quality-data). Documents and other materials associated with the Program can be accessed via a website hosted by Yakama Nation Fisheries (https://yakamafish-nsn.gov/restore/projects/columbia-river-mainstem- water-quality-monitoring-program). Although the Program is limited to the Columbia River upstream of the Bonneville Dam, collaboration with other entities that monitor contaminants in the Columbia River Basin, including the Columbia River estuary below Bonneville Dam, are also an important component of outreach. Our goal is to encourage efforts to ensure data comparability across programs and recognize that the growth and adaptive management of the Program considers basin-wide monitoring developments.

Oregon, Washington↗

Snake River fall Chinook salmon life history investigations, 1/1/2012 - 12/31/2012: Annual report 2002-032-00

Executive Summary a. Fish Population RM&E This annual report describes the data collected and analyses conducted during calendar years 2012-2013 by staff of project 20023200. The USGS contributed only to the predation research and reservoir invertebrate work described in this report and the presentation of their results is consistent with USGS policy guidelines. The USGS is not responsible for the content provided by other contributing authors. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The main goal of this project is to better understand juvenile Snake River fall Chinook salmon life history diversity and the factors that influence it. This is called for in RPA 55.4 &ldquo;Investigate key characteristics of Snake River fall Chinook salmon early life history.&rdquo; We 3 investigated the importance of estuary entry and rearing to various Snake River fall Chinook salmon life histories. Otoliths were used to examine differences in estuary use between subyearlings and yearlings, and to determine natal habitats, rearing habitats, and overwintering habitat for returning adults. Estuary growth was best explained by estuary residence time and natal location. b. Predation and Invasive Species Management RM&E We investigated the extent of smallmouth bass predation on juvenile fall Chinook salmon in Lower Granite Reservoir as called for in the Fish and Wildlife Program, &ldquo;The federal action agencies should work cooperatively with NOAA Fisheries, states, tribes, and the Council to review, evaluate, develop, and implement strategies to reduce non-native piscivorous predation on salmon and steelhead, especially by smallmouth bass, channel catfish, and walleye&rdquo; (Page 52). Smallmouth bass stomach contents were collected and analyzed for the presence of juvenile salmon. Smallmouth bass abundance was estimated with mark-recapture techniques, and salmon consumption by bass was expanded based on bass abundance to determine the annual loss of juvenile fall Chinook salmon for the study period and area. The estimated loss of juvenile fall Chinook salmon to predation in Lower Granite Reservoir exceeded 109,000 fish in 2012. This information could be used to adaptively formulate better hatchery release strategies to reduce the effects of predation. Obtaining better estimates of smallmouth bass abundance and distribution in future years would reduce the uncertainty of estimates. This study will be completed by 2017. We also examined the effects of various field temperature scenarios resulting from summer flow augmentation on juvenile fall Chinook salmon susceptibility to smallmouth bass predation in laboratory trials. Predation susceptibility of juvenile salmon acclimated at cool temperatures (10&deg;C) was highest when exposed to predators at 24&deg;C. These results indicate that predation susceptibility may be higher when a relatively large temperature difference exists between the Clearwater and Snake rivers; that is, when cool water flow augmentation occurs in summer. Finally, we examined the role of different invasive invertebrates in lower Snake River reservoir food webs that are food, or competitors for food, for juvenile fall Chinook salmon. The Siberian prawn, a relatively new invader, is relatively abundant but its role on the food web is largely unexplored. Prawns are successfully reproducing and their diet is 81% Neomysis (an invasive opossum shrimp) which is heavily used at times by juvenile salmon for food. Neomysis has become very abundant in lower Snake River reservoirs in recent years and may be a profitable food item for many fish species.

Oregon, Washington↗

Evaluation of the instream flow incremental methodology by U.S. Fish and Wildlife Service field users

This paper summarizes results of a survey conducted in 1988 of 57 U.S. Fish and Wildlife Service field offices. The purpose was to document opinions of biologists experienced in applying the Instream Flow Incremental Methodology (IFIM). Responses were received from 35 offices where 616 IFIM applications were reported. The existence of six monitoring studies designed to evaluate the adequacy of flows provided at sites was confirmed. The two principal categories reported as stumbling blocks to the successful application of IFIM were beliefs that the methodology is technically too simplistic or that it is too complex to apply. Recommendations receiving the highest scores for future initiatives to enhance IFIM use were (1) training and workshops for field biologists; and (2) improving suitability index (SI) curves and computer models, and evaluating the relationship of weighted useable area (WUA) to fish responses. The authors concur that emphasis for research should be on addressing technical concerns about SI curves and WUA.

Fisheries↗

Hybridization between introduced spotted bass and smallmouth bass in reservoirs

Introductions of black basses Micropterus spp. beyond their native ranges have led to hybridization within the genus. In the southeastern USA, the potential for hybridization appears high because species introductions have been common in reservoirs. We determined the extent of hybridization between smallmouth bass M. dolomieu and spotted bass M. punctulatus in reservoirs in which introductions of either species into the native range of the other species had occurred. Three allozyme loci were used to distinguish the two species and their hybrids. Significant hybridization occurred in two of three reservoirs where introductions had been reported. In Lake Chatuge, Georgia–North Carolina, where the Alabama subspecies of spotted bass M. p. henshalli was introduced, 77 of 276 fish had hybrid genotypes, and only 2 fish had genotypes of the native smallmouth bass. In Thurlow Reservoir, Alabama, where smallmouth bass were introduced and Alabama spotted bass were native, 3 of 17 fish had hybrid genotypes. Only I fish with a possible hybrid genotype was identified in two reservoirs containing native smallmouth bass and northern spotted bass M. p. punctulatus .

Alabama, Georgia, North Carolina, South Carolina↗

Empirical estimation of recreational exploitation of burbot, Lota lota, in the Wind River drainage of Wyoming using a multistate capture–recapture model

Burbot, Lota lota (Linnaeus), is a regionally popular sportfish in the Wind River drainage of Wyoming, USA, at the southern boundary of the range of the species. Recent declines in burbot abundances were hypothesised to be caused by overexploitation, entrainment in irrigation canals and habitat loss. This study addressed the overexploitation hypothesis using tagging data to generate reliable exploitation, abundance and density estimates from a multistate capture–recapture model that accounted for incomplete angler reporting and tag loss. Exploitation rate μ was variable among the study lakes and inversely correlated with density. Exploitation thresholds μ 40 associated with population densities remaining above 40% of carrying capacity were generated to characterise risk of overharvest using exploitation and density estimates from tagging data and a logistic surplus-production model parameterised with data from other burbot populations. Bull Lake (μ = 0.06, 95% CI: 0.03–0.11; μ 40 = 0.18) and Torrey Lake (μ = 0.02, 95% CI: 0.00–0.11; μ 40 = 0.18) had a low risk of overfishing, Upper Dinwoody Lake had intermediate risk (μ = 0.08, 95% CI: 0.02–0.32; μ 40 = 0.18) and Lower Dinwoody Lake had high risk (μ = 0.32, 95% CI: 0.10–0.67; μ 40 = 0.08). These exploitation and density estimates can be used to guide sustainable management of the Wind River drainage recreational burbot fishery and inform management of other burbot fisheries elsewhere.

Wyoming↗

Modeling potential impacts of the Garrison Diversion Unit project on Sand Lake and Arrowwood National Wildlife Refuges: a feasibility analysis

The Garrison Diversion Unit (GDU) of the Pick-Sloan Missouri Basin program was authorized in 1965, with the purpose of diverting Missouri River water to the James River for irrigation, municipal and industrial water supply, fish and wildlife habitat, recreation, and flood control. The project was reauthorized in 1986, with the specification that comprehensive studies be conducted to address a variety of issues. One of these ongoing studies addresses potential impacts of GDU construction and operation on lands of the National Wildlife Refuge (NWR) system, including Arrowwood and Sand Lake Refuges (the Refuges) on the James River. A number of concerns at these Refuges have been identified; the primary concerns addressed in this report include increased winter return flows, which would limit control of rough fish; increased turbidity during project construction, which would decrease production of sago pondweed; and increased water level fluctuations in the late spring and early summer, which would destroy the nests of some over-water nesting birds. The facilitated workshop described in this report was conducted February 18-20, 1987, under the joint sponsorship of the U.S. Bureau of Reclamation, the U.S. Fish and Wildlife Service, and the North Dakota Game and Fish Department. The primary objectives of the workshop were to evaluate the feasibility of using simulation modeling techniques to estimate GDU impacts on Arrowwood and Sand Lake Refuges and to suggest enhancements to the James River Refuge monitoring program. The workshop was structured around the formulation of four submodels: a Hydrology and Water Quality submodel to simulate changes in Refuge pool elevations, turnover rates, and water quality parameters (e.g., total dissolved solids, turbidity, dissolved oxygen, nutrients, water temperature, pesticides) due to GDU construction and operation; a Vegetation submodel to simulate concomitant changes in wetland communities (e.g., sago pondweed, wet meadows, deep and shallow marsh); a Fish submodel to estimate changes in abundance or biomass of rough fish (carp, buffalo) and sportfish (northern pike); and a Wildlife submodel to calculate indices of waterfowl abundance or habitat suitability (e.g., for mallards, western grebes, migrating diving ducks, white-faced ibis, egrets, over-water nesters). Submodels considered weekly to monthly changes in pools within a Refuge over a time horizon of 30-50 years. Based on workshop discussions and past experience with impact analysis modeling, a phased modeling approach was recommended for the James River Refuges analysis. The first phase would involve two modeling efforts. The existing Sand Lake hydrology model, and a similar one developed for Arrowwood NWR, would be validated and used to predict changes on pool elevations and winter inflows to each pool for a variety of GDU alternatives. Outputs from simulations would then be evaluated in terms of potential fish and wildlife impacts. For example, the models could generate indices comparing the magnitude and timing of winter inflows for pre- and postproject conditions; fisheries biologists could then use these indices to better quantify their concerns relative to potential changes in the frequency of rough-fish control. The other modeling effort in the first phase would involve developing a sago pondweed growth model to integrate Refuge monitoring data and existing literature and perhaps to address some questions concerning turbidity impacts. A second phase of simulation modeling would be undertaken only if the initial analyses of hydrologic outputs indicated significant potential problems and if monitoring and research projects had clarified some of the biological and physical processes that cannot be modeled reliably at the present time (e.g., resuspension of sediments by carp, immigration and winter mortality of fish, loss of waterfowl nests due to wave action). The second phase would attempt to develop an integrated impact assessment model. In order to address some of the biological and physical processes that presently are not well understood, a number of studies and enhancements to the Refuge monitoring program were suggested. The Hydrology and Water Quality workgroup recommended increasing turbidity and dissolved oxygen sampling, dropping expensive analysis of some trace elements, adding more pesticide analysis (including some biological monitoring), and developing better area-capacity data for the Sand Lake hydrology model. The Vegetation workgroup suggested expanding the number of monitoring stations, monitoring photosynthetically active radiation by depth, and modifying the biomass sampling procedure and schedule. Also suggested were additional analyses of existing Refuge monitoring data and additional field studies concerning sago growth under a variety of environmental conditions and effects of rough fish density on sago. A careful examination of Refuge narrative reports was recommended by the Fish workgroup to characterize conditions that led to various rates of winter-kill. Monitoring enhancement related to a better understanding of fish population dynamics included increasing dissolved oxygen monitoring, continuing present monitoring of fish movement upstream from Jamestown Reservoir into Arrowwood NWR, initiating similar efforts for upstream movement into Sand Lake NWR and downstream movements into both Refuges, and augmenting the present gillnetting program (or replacing it) with sampling for population and age/size structure estimates. The Wildlife workgroup suggested estimating the relative density of mallard nests in over-water and wet meadow nesting areas, estimating the number of western grebe nests lost due to wave action, delineating wet meadows on the Refuge vegetation maps, estimating annual tuber consumption by birds, and monitoring insect/macroinvertebrate abundance. The workgroup also suggested research studies to better understand the relationships between food supplies and the growth and survival of ducklings and young grebes. the workshop discussions also helped identify some suggestions for modifying project features that, if feasible from an engineering and operational standpoint, would reduce impacts on Refuge lands. These suggestions included: designing drains with control structures or small "reregulation" reservoirs to hold winter return flows that might adversely affect rough fish control, spreading construction activities over a number of years to reduce potential impacts of turbidity on sago pondweed in any single year, scheduling construction to occur after the spring sprouting and elongation growth stages to reduce impacts on sago pondweed, and installing "quick acting" control structures at Arrowwood NWR to reduce pool level fluctuations that might destroy nests of some over-water nesting waterfowl.

Report↗

U.S. Geological Survey (USGS) Western Region: Seabirds coastal and ocean science

From the cold, high Arctic area of Alaska to the warm, tropical Pacific area of Hawai'i, a diverse array of seabird species numbering in the millions of individuals live off the bounty of the Pacific Ocean. Many come to land only to nest and raise their young - these are species supremely adapted for life on the water, whether it be near the coast or hundreds of miles at sea. Those seabirds that reside in the North Pacific year-round are joined each summer by millions of migrant birds that leave the southern hemisphere in winter for better feeding conditions in the north. Seabirds in the Pacific remain one of the great wildlife spectacles on the earth. Yet, seabirds face a number of threats such as oil spills, introduction of predators to their nesting islands, and conflicts with fisheries. State and Federal agencies require increasingly sophisticated information on population dynamics, breeding biology, and feeding ecology to successfully manage these species and their ecosystems. Within the Western Region of the USGS, scientists from the Alaska Science Center (ASC), Western Ecological Research Center (WERC), and Pacific Islands Ecosystems Research Center are leading the way in conducting research on many of these little known species. Their aim is to improve our understanding of seabirds in the Pacific and to provide information to support informed management of the birds and their ecosystems.

Fact Sheet↗

Behavior patterns and fates of adult steelhead, Chinook salmon, and coho salmon released into the upper Cowlitz River Basin, 2005–09 and 2012, Washington

A multiyear radiotelemetry evaluation was conducted to monitor adult steelhead ( Oncorhynchus mykiss ), Chinook salmon ( O. tshawytscha ), and coho salmon ( O. kisutch ) behavior and movement patterns in the upper Cowlitz River Basin. Volitional passage to this area was eliminated by dam construction in the mid-1960s, and a reintroduction program began in the mid-1990s. Fish are transported around the dams using a trap-and-haul program, and adult release sites are located in Lake Scanewa, the uppermost reservoir in the system, and in the Cowlitz and Cispus Rivers. Our goal was to estimate the proportion of tagged fish that fell back downstream of Cowlitz Falls Dam before the spawning period and to determine the proportion that were present in the Cowlitz and Cispus Rivers during the spawning period. Fallback is important because Cowlitz Falls Dam does not have upstream fish passage, so fish that pass the dam are unable to move back upstream and spawn. A total of 2,051 steelhead and salmon were tagged for the study, which was conducted during 2005–09 and 2012, and 173 (8.4 percent) of these regurgitated their transmitter prior to, or shortly after release. Once these fish were removed from the dataset, the final number of fish that was monitored totaled 1,878 fish, including 647 steelhead, 770 Chinook salmon, and 461 coho salmon. Hatchery-origin (HOR) and natural-origin (NOR) steelhead, Chinook salmon, and coho salmon behaved differently following release into Lake Scanewa. Detection records showed that the percentage of HOR fish that moved upstream and entered the Cowlitz River or Cispus River after release was relatively low (steelhead = 38 percent; Chinook salmon = 67 percent; coho salmon = 41 percent) compared to NOR fish (steelhead = 84 percent; Chinook salmon = 82 percent; coho salmon = 76 percent). The elapsed time from release to river entry was significantly lower for NOR fish than for HOR fish for all three species. Tagged fish entered the Cowlitz River in greater proportions than the Cispus River, regardless of origin. We found that 23–47 percent of the HOR fish entered the Cowlitz River and 12–38 percent entered the Cispus River. Similarly, 67–70 percent of the NOR fish entered the Cowlitz River and 38–66 percent entered the Cispus River. These behavioral differences translated into similar differences in fates during the spawning periods as higher percentages of tagged fish were assigned Cowlitz River fates than Cispus River fates. Fallback rates were affected by fish origin and release site. Overall, 12 percent of steelhead, 19 percent of Chinook salmon, and 8 percent of coho salmon fell back downstream of Cowlitz Falls Dam prior to spawning. Fallback rates were lower for fish that were released in the Cowlitz River or the Cispus River than for reservoir-released fish, but statistical comparisons were not robust because of small sample sizes at the river release sites. Fallback rates for fish released at the river release sites were 10 percent lower for steelhead, 4 percent lower for Chinook salmon, and 9 percent lower for coho salmon than for reservoir-released fish. However, fallback rates also were different between HOR and NOR fish. Fallback rates were significantly higher for HOR reservoir-released fish than for NOR reservoir-released fish. This study provided data that were insightful for understanding behavior and movement patterns in the upper Cowlitz River Basin and yielded estimates of fallback rates and fish fates that may be useful for fishery managers in the years to come. Studies from other systems have shown that factors such as prespawn mortality and fallback have resulted in substantial losses to spawning populations where trap-and-haul programs are being used as a restoration tool. Future research in the upper Cowlitz River Basin may use additional telemetry studies, genetic analyses, and spawning ground surveys to provide answers for new questions and to continue to monitor the progress of the reintroduction effort.

Washington↗

Water-balance modeling of selected lakes for evaluating viability as long-term fisheries in Kidder, Logan, and Stutsman Counties, North Dakota

Water levels in lakes and wetlands in the central North Dakota Missouri Coteau region that were either dry or only sporadically held water since before the 1930s have been rising since the early 1990s in response to an extended wet period. The lakes have remained full since the mid-1990s, which has provided benefits to migratory waterfowl, fisheries, and wildlife. A small shift in climate conditions, either to drier or wetter conditions, can have a large effect on the lake levels of these water bodies. The North Dakota Game and Fish Department identified five lakes as candidates for sustaining long-term fisheries. The lakes are in Kidder, Stutsman, and Logan Counties, and some lakes might receive inflow from mostly freshwater aquifers, such as the Central Dakota and Streeter aquifers, and were mostly dry during the early 1990s. After about 1995, the lakes had filled up and were deep enough to sustain populations of game fish such as walleye, perch, and northern pike. Before investing in development of permanent fisheries and associated infrastructure, such as campgrounds and boat ramps, fisheries biologists needed to know if the lake levels are likely to remain high in coming decades. The U.S. Geological Survey, in cooperation with the North Dakota Game and Fish Department, developed a water-balance model to determine the effects of precipitation, evapotranspiration, and groundwater interaction on lake volumes. The model was developed using climate input data and lake volumes for the calibration period 1992 through 2016, during which historical lake volumes could be estimated using land surface elevation data and Landsat images. Long-term (1940–2018) climate input data were used with the water-balance model to reconstruct historical lake volumes prior to the calibration period, and block-bootstrapping was used to simulate potential future climate input data and lake volumes for 2017 through 2067. The simulated future lake volumes were used to estimate the likelihood of annual lake volumes remaining consistent, increasing, or decreasing through the year 2067. Of the five lakes, Sibley Lake was the most likely to sustain a long-term fishery for a period longer than 50 years. The simulated lake volumes for Alkaline Lake, Big Mallard Marsh, and Remmick Lake indicated the lakes have a 50-percent chance to fall below 75 percent of their 2016 volume by about 2030, 2067, and 2025, respectively. Simulation results for Marvin Miller Lake were substantially different compared to the other four lakes and indicated the lake has a 50-percent chance to fall below 75 percent of its 2016 volume prior to 2025.

North Dakota↗

Invertibility aware integration of static and time-series data: An application to lake temperature modeling

Accurate predictions of water temperature are the foundation for many decisions and regulations, with direct impacts on water quality, fishery yields, and power production. Building accurate broad-scale models for lake temperature prediction remains challenging in practice due to the variability in the data distribution across different lake systems monitored by static and time-series data. In this paper, to tackle the above challenges, we propose a novel machine learning based approach for integrating static and time-series data in deep recurrent models, which we call Invertibility-Aware-Long Short-Term Memory(IA-LSTM), and demonstrate its effectiveness in predicting lake temperature. Our proposed method integrates components of the Invertible Network and LSTM to better predict temperature profiles (forward modeling) and infer the static features (i.e., inverse modeling) that can eventually enhance the prediction when static variables are missing. We evaluate our method on predicting the temperature profile of 450 lakes in the Midwestern U.S. and report relative improvement of 4% to capture data heterogeneity and simultaneously outperform baseline predictions by 12% when static features are unavailable.

Conference Paper↗

Piscicides and invertebrates: after 70 years, does anyone really know?

The piscicides rotenone and antimycin have been used for more than 70 years to manage fish populations by eliminating undesirable fish species. The effects of piscicides on aquatic invertebrate assemblages are considered negligible by some and significant by others. This difference of opinion has created contentious situations and delayed native fish restoration projects. We review the scientific evidence and report that short-term (< 3 months) impacts of piscicides to invertebrate assemblages varied from minor to substantial and long-term (> 1 year) impacts are largely unknown. Recovery of invertebrate assemblages following treatments ranged from a few months for abundances of common taxa to several years for rarer taxa. Variation in reported effects was primarily due to natural variation among species and habitats and a lack of adequate pre- and post-treatment sampling which prevents determining the true impacts to invertebrate assemblages. The factors most likely to influence impacts and recovery of aquatic invertebrate assemblages following piscicide treatments are: (1) concentration, duration, and breadth of the piscicide treatment; (2) invertebrate morphology and life history characteristics, including surface area to volume ratios, type of respiration organs, generation time, and propensity to disperse; (3) refugia presence; and (4) distance from colonization sources.

Fisheries↗

Agency approach to allocation of human capital and program composition for human-marine mammal interaction management in the United States

Introduction: Marine mammals have served important and diverse roles throughout human history. Once exploited to near extinction, many species in the United States (U.S.) have recovered dramatically under the Marine Mammal Protection Act (MMPA). The U.S. National Marine Fisheries Service (NMFS) has jurisdiction to administer the MMPA for cetaceans and most pinnipeds. While most take is now prohibited, NMFS still dedicates significant time and resources to protecting and conserving marine mammals. As human populations continue to grow and exploit marine environments, opportunities for human-marine mammal interactions (HMMI) have increased. Resources may fail to keep up with growing needs for conservation investments, so that many agencies struggle to adequately meet social and legal requirements. Methods: This study evaluated NMFS’ approach to addressing HMMI through a mixed-methods (semi-structured interviews, quantitative questionnaire, and facilitated workshops) expert elicitation analysis of resource allocation (i.e., staff time) and priorities of NMFS Science Center (SC) and Regional Office (RO) staff across five geographic regions to understand how employee time is allocated, the degree to which employee time allocation is aligned with self-reported job descriptions, and employee perceptions of actions or investments which would improve their ability to mitigate HMMI. Results and Discussion: SC staff reported spending more time on Biological and Administrative tasks , while RO staff allocated more time to Policy, Social science , and Outreach tasks . SC employees spent less time on Biological tasks than specified by their perceived job descriptions, suggesting resource constraints. Participants identified Biological research and monitoring as top priorities, followed by Policy tasks . Identified actions included increasing research capacity, enhancing enforcement, expanding social science expertise, and improving outreach programs. The study reveals mismatches between mandated activities and available resources, suggesting strategic reallocation or increased funding may benefit the agency in effectively addressing growing HMMI challenges.

Frontiers in Marine Science↗