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USGS2014

Modeling spatially-varying landscape change points in species occurrence thresholds

Predicting species distributions at scales of regions to continents is often necessary, as large-scale phenomena influence the distributions of spatially structured populations. Land use and land cover are important large-scale drivers of species distributions, and landscapes are known to create species occurrence thresholds, where small changes in a landscape characteristic results in abrupt changes in occurrence. The value of the landscape characteristic at which this change occurs is referred to as a change point. We present a hierarchical Bayesian threshold model (HBTM) that allows for estimating spatially varying parameters, including change points. Our model also allows for modeling estimated parameters in an effort to understand large-scale drivers of variability in land use and land cover on species occurrence thresholds. We use range-wide detection/nondetection data for the eastern brook trout ( Salvelinus fontinalis ), a stream-dwelling salmonid, to illustrate our HBTM for estimating and modeling spatially varying threshold parameters in species occurrence. We parameterized the model for investigating thresholds in landscape predictor variables that are measured as proportions, and which are therefore restricted to values between 0 and 1. Our HBTM estimated spatially varying thresholds in brook trout occurrence for both the proportion agricultural and urban land uses. There was relatively little spatial variation in change point estimates, although there was spatial variability in the overall shape of the threshold response and associated uncertainty. In addition, regional mean stream water temperature was correlated to the change point parameters for the proportion of urban land use, with the change point value increasing with increasing mean stream water temperature. We present a framework for quantify macrosystem variability in spatially varying threshold model parameters in relation to important large-scale drivers such as land use and land cover. Although the model presented is a logistic HBTM, it can easily be extended to accommodate other statistical distributions for modeling species richness or abundance.

Ecosphere↗

USGS2015

Return to normal streamflows and water levels: Summary of hydrologic conditions in Georgia, 2013

The U.S. Geological Survey (USGS) South Atlantic Water Science Center (SAWSC) Georgia office, in cooperation with local, State, and other Federal agencies, maintains a long-term hydrologic monitoring network of more than 340 real-time continuous-record streamflow-gaging stations (streamgages), including 10 real-time lake-level monitoring stations, 67 real-time surface-water-quality monitors, and several water-quality sampling programs. Additionally, the SAWSC Georgia office operates more than 180 groundwater monitoring wells, 39 of which are real-time. The wide-ranging coverage of streamflow, reservoir, and groundwater monitoring sites allows for a comprehensive view of hydrologic conditions across the State. One of the many benefits of this monitoring network is that the analyses of the data provide a spatially distributed overview of the hydrologic conditions of creeks, rivers, reservoirs, and aquifers in Georgia. Streamflow and groundwater data are verified throughout the year by USGS hydrographers. Hydrologic conditions are determined by comparing the results of statistical analyses of the data collected during the current water year (WY) to historical data collected over the period of record. Changing hydrologic conditions emphasize the need for accurate, timely data to help Federal, State, and local officials make informed decisions regarding the management and conservation of Georgia’s water resources for agricultural, recreational, ecological, and water-supply needs and for use in protecting life and property. Drought conditions, persistent in the area since 2010, continued into the 2013 WY. In February 2013, Georgia was free of extreme (D3) drought conditions, as defined by the U.S. Drought Monitor, for the first time since August 2010 due to extended periods of heavy rainfall (U.S. Drought Monitor, 2013). According to the Office of the State Climatologist, the city of Savannah recorded 9.75 inches of rain in February 2013, the highest monthly total in February out of 143 years of record. Macon and Columbus also received record rainfalls in February 2013. Above-normal precipitation continued in June 2013, and the cities of Augusta and Savannah recorded the wettest June on record. In July, precipitation for the entire State of Georgia was 3.53 inches above normal (Dunkley, 2013). Above-normal rainfall from February to September 2013 increased streamflow and raised groundwater levels, and lakes and reservoirs were raised to full-pool elevations.

Georgia↗

USGS1991

Work plan for regional reconnaissance for selected herbicides and nitrate in ground water of the mid-continent United States, 1991

An approach was developed to obtain a consistent, regional distribution of herbicide and nitrate data from near-surface aquifers in the corn and soybean producing region of the mid-continent. Near-surface aquifers are defined as those with the top of aquifer material within 50 feet of land surface, regardless of whether the material is saturated or unsaturated. Three hundred wells will be selected for sampling from 12 states. These States include Illinois, Indiana, Iowa, Kansas, Michigan, Minnesota, Missouri, Nebraska, North Dakota, Ohio, South Dakota, and Wisconsin. The reconnaissance data obtained will be used to determine the spatial and seasonal distribution of selected herbicides, two atrazine metabolites, and nitrate in near-surface aquifers in the study region. Hydrologic, geologic, and land-use data will be collected for use in an exploratory statistical analysis to help explain the herbicide distribution.

Illinois, Indiana, Iowa, Kansas, Michigan, Minneso↗

USGS2005

Augmenting two-dimensional hydrodynamic simulations with measured velocity data to identify flow paths as a function of depth on Upper St. Clair River in the Great Lakes basin

Upper St. Clair River, which receives outflow from Lake Huron, is characterized by flow velocities that exceed 7 feet per second and significant channel curvature that creates complex flow patterns downstream from the Blue Water Bridge in the Port Huron, Michigan, and Sarnia, Ontario, area. Discrepancies were detected between depth-averaged velocities previously simulated by a two-dimensional (2D) hydrodynamic model and surface velocities determined from drifting buoy deployments. A detailed ADCP (acoustic Doppler current profiler) survey was done on Upper St. Clair River during July 1–3, 2003, to help resolve these discrepancies. As part of this study, a refined finite-element mesh of the hydrodynamic model used to identify source areas to public water intakes was developed for Upper St. Clair River. In addition, a numerical procedure was used to account for radial accelerations, which cause secondary flow patterns near channel bends. The refined model was recalibrated to better reproduce local velocities measured in the ADCP survey. ADCP data also were used to help resolve the remaining discrepancies between simulated and measured velocities and to describe variations in velocity with depth. Velocity data from ADCP surveys have significant local variability, and statistical processing is needed to compute reliable point estimates. In this study, velocity innovations were computed for seven depth layers posited within the river as the differences between measured and simulated velocities. For each layer, the spatial correlation of velocity innovations was characterized by use of variogram analysis. Results were used with kriging to compute expected innovations within each layer at applicable model nodes. Expected innovations were added to simulated velocities to form integrated velocities, which were used with reverse particle tracking to identify the expected flow path near a sewage outfall as a function of flow depth. Expected particle paths generated by use of the integrated velocities showed that surface velocities in the upper layers tended to originate nearer the Canadian shoreline than velocities near the channel bottom in the lower layers. Therefore, flow paths to U.S. public water intakes located on the river bottom are more likely to be in the United States than withdrawals near the water surface. Integrated velocities in the upper layers are generally consistent with the surface velocities indicated by drifting-buoy deployments. Information in the 2D hydrodynamic model and the ADCP measurements was insufficient to describe the vertical flow component. This limitation resulted in the inability to account for vertical movements on expected flow paths through Upper St. Clair River. A three dimensional hydrodynamic model would be needed to account for these effects.

Scientific Investigations Report↗

USGS2010

Groundwater-quality monitoring program in Chester County, Pennsylvania, 1980-2008

The U.S. Geological Survey in cooperation with the Chester County Water Resources Authority and the Chester County Health Department began a groundwater-quality monitoring program in 1980 in Chester County, Pa., where a large percentage of the population relies on wells for drinking-water supply. This report documents the program and serves as a reference for data collected through the program from 1980 through 2008. The initial focus of the program was to collect data on groundwater quality near suspected localized sources of contamination, such as uncontrolled landfills and suspected industrial wastes, to determine if contaminants were present that might pose a health risk to those using the groundwater. Subsequently, the program was expanded to address the effects of widely distributed contaminant sources associated with agricultural and residential land uses on groundwater quality and to document naturally occurring constituents, such as radium, radon, and arsenic, that are potential hazards in drinking water. Since 2000, base-flow stream samples have been collected in addition to well-water and spring samples in a few small drainage areas to investigate the relation between groundwater quality measured in well samples and streams. The program has primarily consisted of spatial assessment with limited temporal data collected on groundwater quality. Most data were collected through the monitoring program for reconnaissance purposes to identify and locate groundwater-quality problems and generally were not intended for rigorous statistical analyses that might determine land-use or geochemical factors affecting groundwater quality in space or through time. Results of the program found several contaminants associated with various land uses and human activities in groundwater in Chester County. Volatile organic compounds (such as trichloroethylene) were measured in groundwater near suspected localized contaminant sources in concentrations that exceeded drinking-water standards. Groundwater in some agricultural areas had concentrations of nitrate and some pesticides that exceeded drinking-water standards. Elevated concentrations of chloride were measured near salt storage areas and highways. Formaldehyde was detected in groundwater near cemeteries. In residential areas with on-site wastewater disposal, effects on groundwater quality included elevated nitrate concentrations and low concentrations of volatile organic compounds and wastewater compounds, such as antibiotics and detergents. Base-flow samples indicated that groundwater discharge to streams carried contaminants such as nitrate, pesticides, wastewater compounds, and other contaminants. Radionuclides, including radium-226, radium-228, radium-224, and radon-222, and gross alpha-particle activity were measured in groundwater at levels above established and proposed drinking-water standards in some geologic units, particularly in quartzite and quartzite schists. Arsenic concentrations above drinking-water standards were measured in a few samples and were most likely to occur in groundwater in the shales and sandstones in the northern part of the county. Other potential natural hazards, such as lead from aquifer materials or leached from plumbing because of pH, were present in concentrations above drinking-water standards infrequently (less than 10 percent of samples). Limited temporal sampling suggested that chloride concentrations in groundwater increased in the county since the program began in 1980 through 2008, reflecting increasing population and urbanization in that period.

Scientific Investigations Report↗

USGS2009

Estuarine water quality in parks of the Northeast Coastal and Barrier Network: Development and early implementation of vital signs estuarine nutrient-enrichment monitoring, 2003-06

This report documents results of pilot tests of a protocol for monitoring estuarine nutrient enrichment for the Vital Signs Monitoring Program of the National Park Service Northeast Coastal and Barrier Network. Data collected from four parks during protocol development in 2003-06 are presented: Gateway National Recreation Area, Colonial National Historic Park, Fire Island National Seashore, and Assateague Island National Seashore. The monitoring approach incorporates several spatial and temporal designs to address questions at a hierarchy of scales. Indicators of estuarine response to nutrient enrichment were sampled using a probability design within park estuaries during a late-summer index period. Monitoring variables consisted of dissolved-oxygen concentration, chlorophyll a concentration, water temperature, salinity, attenuation of downwelling photosynthetically available radiation (PAR), and turbidity. The statistical sampling design allowed the condition of unsampled locations to be inferred from the distribution of data from a set of randomly positioned "probability" stations. A subset of sampling stations was sampled repeatedly during the index period, and stations were not rerandomized in subsequent years. These "trend stations" allowed us to examine temporal variability within the index period, and to improve the sensitivity of the monitoring protocol to detecting change through time. Additionally, one index site in each park was equipped for continuous monitoring throughout the index period. Thus, the protocol includes elements of probabilistic and targeted spatial sampling, and the temporal intensity ranges from snapshot assessments to continuous monitoring.

Natural Resource Technical Report↗

USGS2009

Inference of distributional parameters from compositional samples containing nondetects

Low concentrations of elements in geochemical analyses have the peculiarity of being compositional data and, for a given level of significance, are likely to be beyond the capabilities of laboratories to distinguish between minute concentrations and complete absence, thus preventing laboratories from reporting extremely low concentrations of the analyte. Instead, what is reported is the detection limit, which is the minimum concentration that conclusively differentiates between presence and absence of the element. A spatially distributed exhaustive sample is employed in this study to generate unbiased sub-samples, which are further censored to observe the effect that different detection limits and sample sizes have on the inference of population distributions starting from geochemical analyses having specimens below detection limit (nondetects). The isometric logratio transformation is used to convert the compositional data in the simplex to samples in real space, thus allowing the practitioner to properly borrow from the large source of statistical techniques valid only in real space. The bootstrap method is used to numerically investigate the reliability of inferring several distributional parameters employing different forms of imputation for the censored data. The case study illustrates that, in general, best results are obtained when imputations are made using the distribution best fitting the readings above detection limit and exposes the problems of other more widely used practices. When the sample is spatially correlated, it is necessary to combine the bootstrap with stochastic simulation.

Conference Paper↗

USGS2014

Introduction: Hazard mapping

Twenty papers were accepted into the session on landslide hazard mapping for oral presentation. The papers presented susceptibility and hazard analysis based on approaches ranging from field-based assessments to statistically based models to assessments that combined hydromechanical and probabilistic components. Many of the studies have taken advantage of increasing availability of remotely sensed data and nearly all relied on Geographic Information Systems to organize and analyze spatial data. The studies used a range of methods for assessing performance and validating hazard and susceptibility models. A few of the studies presented in this session also included some element of landslide risk assessment. This collection of papers clearly demonstrates that a wide range of approaches can lead to useful assessments of landslide susceptibility and hazard.

Book chapter↗

USGS2014

An analysis of the global spatial variability of column-averaged CO 2 from SCIAMACHY and its implications for CO 2 sources and sinks

Satellite observations of carbon dioxide (CO 2 ) are important because of their potential for improving the scientific understanding of global carbon cycle processes and budgets. We present an analysis of the column-averaged dry air mole fractions of CO 2 (denoted XCO 2 ) of the Scanning Imaging Absorption Spectrometer for Atmospheric Cartography (SCIAMACHY) retrievals, which were derived from a satellite instrument with relatively long-term records (2003–2009) and with measurements sensitive to the near surface. The spatial-temporal distributions of remotely sensed XCO 2 have significant spatial heterogeneity with about 6–8% variations (367–397 ppm) during 2003–2009, challenging the traditional view that the spatial heterogeneity of atmospheric CO 2 is not significant enough (<4%) to have any large effect on terrestrial ecosystem carbon cycles. By comparison with surface measurements from the NOAA Earth System Research Laboratory (ESRL) GLOBALVIEW network, significant statistical relationships between XCO 2 and surface CO 2 were found for major ecosystems, with the exception of tropical forest. In addition, when compared with a simulated terrestrial carbon uptake from the Integrated Biosphere Simulator (IBIS) and the Emissions Database for Global Atmospheric Research (EDGAR) carbon emission inventory, the latitudinal gradient of XCO 2 seasonal amplitude was influenced by the combined effect of terrestrial carbon uptake, carbon emission, and atmospheric transport, suggesting no direct implications for terrestrial carbon sinks. From the investigation of the growth rate of XCO 2 we found that the increase of CO 2 concentration was dominated by temperature in the northern hemisphere (20–90°N) and by precipitation in the southern hemisphere (20–90°S), with the major contribution to global average occurring in the northern hemisphere. These findings indicated that the satellite measurements of atmospheric CO 2 improve not only the estimations of atmospheric inversion, but also the understanding of the terrestrial ecosystem carbon dynamics and its feedback to atmospheric CO 2 .

International Journal of Remote Sensing↗

USGS2017

Groundwater quality in the Western San Joaquin Valley study unit, 2010: California GAMA Priority Basin Project

Water quality in groundwater resources used for public drinking-water supply in the Western San Joaquin Valley (WSJV) was investigated by the USGS in cooperation with the California State Water Resources Control Board (SWRCB) as part of its Groundwater Ambient Monitoring and Assessment (GAMA) Program Priority Basin Project. The WSJV includes two study areas: the Delta–Mendota and Westside subbasins of the San Joaquin Valley groundwater basin. Study objectives for the WSJV study unit included two assessment types: (1) a status assessment yielding quantitative estimates of the current (2010) status of groundwater quality in the groundwater resources used for public drinking water, and (2) an evaluation of natural and anthropogenic factors that could be affecting the groundwater quality. The assessments characterized the quality of untreated groundwater, not the quality of treated drinking water delivered to consumers by water distributors. The status assessment was based on data collected from 43 wells sampled by the U.S. Geological Survey for the GAMA Priority Basin Project (USGS-GAMA) in 2010 and data compiled in the SWRCB Division of Drinking Water (SWRCB-DDW) database for 74 additional public-supply wells sampled for regulatory compliance purposes between 2007 and 2010. To provide context, concentrations of constituents measured in groundwater were compared to U.S. Environmental Protection Agency (EPA) and SWRCB-DDW regulatory and non-regulatory benchmarks for drinking-water quality. The status assessment used a spatially weighted, grid-based method to estimate the proportion of the groundwater resources used for public drinking water that has concentrations for particular constituents or class of constituents approaching or above benchmark concentrations. This method provides statistically unbiased results at the study-area scale within the WSJV study unit, and permits comparison of the two study areas to other areas assessed by the GAMA Priority Basin Project statewide. Groundwater resources used for public drinking water in the WSJV study unit are among the most saline and most affected by high concentrations of inorganic constituents of all groundwater resources used for public drinking water that have been assessed by the GAMA Priority Basin Project statewide. Among the 82 GAMA Priority Basin Project study areas statewide, the Delta–Mendota study area ranked above the 90th percentile for aquifer-scale proportions of groundwater resources having concentrations of total dissolved solids (TDS), sulfate, chloride, manganese, boron, chromium(VI), selenium, and strontium above benchmarks, and the Westside study area ranked above the 90th percentile for TDS, sulfate, manganese, and boron. In the WSJV study unit as a whole, one or more inorganic constituents with regulatory or non-regulatory, health-based benchmarks were present at concentrations above benchmarks in about 53 percent of the groundwater resources used for public drinking water, and one or more organic constituents with regulatory health-based benchmarks were detected at concentrations above benchmarks in about 3 percent of the resource. Individual constituents present at concentrations greater than health-based benchmarks in greater than 2 percent of groundwater resources used for public drinking water included: boron (51 percent, SWRCB-DDW notification level), chromium(VI) (25 percent, SWRCB-DDW maximum contaminant level (MCL)), arsenic (10 percent, EPA MCL), strontium (5.1 percent, EPA Lifetime health advisory level (HAL)), nitrate (3.9 percent, EPA MCL), molybdenum (3.8 percent, EPA HAL), selenium (2.6 percent, EPA MCL), and benzene (2.6 percent, SWRCB-DDW MCL). In addition, 50 percent of the resource had TDS concentrations greater than non-regulatory, aesthetic-based SWRCB-DDW upper secondary maximum contaminant level (SMCL), and 44 percent had manganese concentrations greater than the SWRCB-DDW SMCL. Natural and anthropogenic factors that could affect the groundwater quality were evaluated by using results from statistical testing of associations between constituent concentrations and values of potential explanatory factors, inferences from geochemical and age-dating tracer results, and by considering the water-quality results in the context of the hydrogeologic setting of the WSJV study unit. Natural factors, particularly the lithologies of the source areas for groundwater recharge and of the aquifers, were the dominant factors affecting groundwater quality in most of the WSJV study unit. However, where groundwater resources used for public supply included groundwater recharged in the modern era, mobilization of constituents by recharge of water used for irrigation also affected groundwater quality. Public-supply wells in the Westside study area had a median depth of 305 m and primarily tapped groundwater recharged hundreds to thousands of years ago, whereas public-supply wells in the Delta–Mendota study area had a median depth of 85 m and primarily tapped either groundwater recharged within the last 60 years or groundwater consisting of mixtures of this modern recharge and older recharge. Public-supply wells in the WSJV study unit are screened in the Tulare Formation and zones above and below the Corcoran Clay Member are used. The Tulare Formation primarily consists of alluvial sediments derived from the Coast Ranges to the west, except along the valley trough at the eastern margin of the WSJV study unit where the Tulare Formation consists of fluvial sands derived from the Sierra Nevada to the east. Groundwater from wells screened in the Sierra Nevada sands had manganese-reducing or manganese- and iron-reducing oxidation-reduction (redox) conditions. These redox conditions commonly were associated with elevated arsenic or molybdenum concentrations, and the dominance of arsenic(III) in the dissolved arsenic supports reductive dissolution of iron and manganese oxyhydroxides as the mechanism. In addition, groundwater from many wells screened in Sierra Nevada sands contained low concentrations of nitrite or ammonium, indicating reduction of nitrate by denitrification or dissimilatory processes, respectively. Geology of the Coast Ranges westward of the study unit strongly affects groundwater quality in the WSJV. Elevated concentrations of TDS, sulfate, boron, selenium and strontium in groundwater were primarily associated with aquifer sediments and recharge derived from areas of the Coast Ranges dominated by Cretaceous-to-Miocene age, organic-rich, reduced marine shales, known as the source of selenium in WSJV soils, surface water, and groundwater. Low sulfur-isotopic values (δ34S) of dissolved sulfate indicate that the sulfate was largely derived from oxidation of biogenic pyrite from the shales, and correlations with trace element concentrations, geologic setting, and groundwater geochemical modeling indicated that distributions of sulfate, strontium, and selenium in groundwater were controlled by dissolution of secondary sulfate minerals in soils and sediments. Elevated concentrations of chromium(VI) were primarily associated with aquifer sediments and recharge derived from areas of the Coast Ranges dominated by the Franciscan Complex and ultramafic rocks. The Franciscan Complex also has boron-rich, sodium-chloride dominated hydrothermal fluids that contribute to elevated concentrations of boron and TDS. Groundwater from wells screened in Coast Ranges alluvium was primarily oxic and relatively alkaline (median pH value of 7.55) in the Delta–Mendota study area, and primarily nitrate-reducing or suboxic and alkaline (median pH value of 8.4) in the Westside study area. Many groundwater samples from those wells have elevated concentrations of arsenic(V), molybdenum, selenium, or chromium(VI), consistent with desorption of metal oxyanions from mineral surfaces under those geochemical conditions. High concentrations of benzene were associated with deep wells located in the vicinity of petroleum deposits at the southern end of the Westside study area. Groundwater from these wells had premodern age and anoxic geochemical conditions, and the ratios among concentrations of hydrocarbon constituents were different from ratios found in fuels and combustion products, which is consistent with a geogenic source for the benzene rather than contamination from anthropogenic sources. Water stable-isotope compositions, groundwater recharge temperatures, and groundwater ages were used to infer four types of groundwater: (1) groundwater derived from natural recharge of water from major rivers draining the Sierra Nevada; (2) groundwater primarily derived from natural recharge of water from Coast Ranges runoff; (3) groundwater derived from recharge of pumped groundwater applied to the land surface for irrigation; and (4) groundwater derived from recharge during a period of much cooler paleoclimate. Water previously used for irrigation was found both above and below the Corcoran Clay, supporting earlier inferences that this clay member is no longer a robust confining unit. Recharge of water used for irrigation has direct and indirect effects on groundwater quality. Elevated nitrate concentrations and detections of herbicides and fumigants in the Delta–Mendota study area generally were associated with greater agricultural land use near the well and with water recharged during the last 60 years. However, the extent of the groundwater resource affected by agricultural sources of nitrate was limited by groundwater redox conditions sufficient to reduce nitrate. The detection frequency of perchlorate in Delta–Mendota groundwater was greater than expected for natural conditions. Perchlorate, nitrate, selenium, and strontium concentrations were correlated with one another and were greater in groundwater inferred to be recharge of previously pumped groundwater used for irrigation. The source of the perchlorate, selenium, and strontium appears to be salts deposited in the soils and sediments of the arid WSJV that are dissolved and flushed into groundwater by the increased amount of recharge caused by irrigation. In the Delta–Mendota study area, the groundwater with elevated concentrations of selenium was found deeper in the aquifer system than it was reported by a previous study 25 years earlier, suggesting that this transient front of groundwater with elevated concentrations of constituents derived from dissolution of soil salts by irrigation recharge is moving down through the aquifer system and is now reaching the depth zone used for public drinking water supply.

California↗

USGS2018

Exposure of Alaska brown bears (Ursus arctos) to bacterial, viral, and parasitic agents varies spatiotemporally and may be influenced by age

We collected blood and serum from 155 brown bears ( Ursus arctos ) inhabiting five locations in Alaska during 2013–16 and tested samples for evidence of prior exposure to a suite of bacterial, viral, and parasitic agents. Antibody seroprevalence among Alaska brown bears was estimated to be 15% for Brucella spp., 10% for Francisella tularensis , 7% for Leptospira spp., 18% for canine adenovirus type 1 (CAV-1), 5% for canine distemper virus (CDV), 5% for canine parvovirus, 5% for influenza A virus (IAV), and 44% for Toxoplasma gondii . No samples were seropositive for antibodies to Trichinella spp. Point estimates of prior exposure to pathogens among brown bears at previously unsampled locations generally fell within the range of estimates for previously or contemporaneously sampled bears in Alaska. Statistical support was found for variation in antibody seroprevalence among bears by location or age cohort for CAV-1, CDV, IAV, and Toxoplasma gondii . There was limited concordance in comparisons between our results and previous serosurveys regarding spatial and age-related trends in antibody seroprevalence among Alaska brown bears suggestive of temporal variation. However, we found evidence that the seroprevalence of CAV-1 antibodies is consistently high in bears inhabiting SW Alaska and the cumulative probability of exposure may increase with age. We found evidence for seroconversion or seroreversion to six different infectious agents in one or more bears. Results of this study increase our collective understanding of disease risk to both Alaska brown bear populations and humans that utilize this resource.

Alaska↗

USGS2015

Establishing conservation baselines with dynamic distribution models for bat populations facing imminent decline

Aim Bat mortality rates from white-nose syndrome and wind power development are unprecedented. Cryptic and wide-ranging behaviours of bats make them difficult to survey, and population estimation is often intractable. We advance a model-based framework for making spatially explicit predictions about summertime distributions of bats from capture and acoustic surveys. Motivated by species-energy and life-history theory, our models describe hypotheses about spatio-temporal variation in bat distributions along environmental gradients and life-history attributes, providing a statistical basis for conservation decision-making. Location Oregon and Washington, USA. Methods We developed Bayesian hierarchical models for 14 bat species from an 8-year monitoring dataset across a ~430,000 km 2 study area. Models accounted for imperfect detection and were temporally dynamic. We mapped predicted occurrence probabilities and prediction uncertainties as baselines for assessing future declines. Results Forest cover, snag abundance and cliffs were important predictors for most species. Species occurrence patterns varied along elevation and precipitation gradients, suggesting a potential hump-shaped diversity–productivity relationship. Annual turnover in occurrence was generally low, and occurrence probabilities were stable among most species. We found modest evidence that turnover covaried with the relative riskiness of bat roosting and migration. The fringed myotis ( Myotis thysanodes ), canyon bat ( Parastrellus hesperus ) and pallid bat ( Antrozous pallidus ) were rare; fringed myotis occurrence probabilities declined over the study period. We simulated anticipated declines to demonstrate that mapped occurrence probabilities, updated over time, provide an intuitive way to assess bat conservation status for a broad audience. Main conclusions Landscape keystone structures associated with roosting habitat emerged as regionally important predictors of bat distributions. The challenges of bat monitoring have constrained previous species distribution modelling efforts to temporally static presence-only approaches. Our approach extends to broader spatial and temporal scales than has been possible in the past for bats, making a substantial increase in capacity for bat conservation.

Oregon, Washington↗

USGS2015

Patterns and predictability in the intra-annual organic carbon variability across the boreal and hemiboreal landscape

Factors affecting total organic carbon (TOC) concentrations in 215 watercourses across Sweden were investigated using parameter parsimonious regression approaches to explain spatial and temporal variabilities of the TOC water quality responses. We systematically quantified the effects of discharge, seasonality, and long-term trend as factors controlling intra-annual (among year) and inter-annual (within year) variabilities of TOC by evaluating the spatial variability in model coefficients and catchment characteristics (e.g. land cover, retention time, soil type). Catchment area (0.18–47,000 km 2 ) and land cover types (forests, agriculture and alpine terrain) are typical for the boreal and hemiboreal zones across Fennoscandia. Watercourses had at least 6 years of monthly water quality observations between 1990 and 2010. Statistically significant models (p < 0.05) describing variation of TOC in streamflow were identified in 209 of 215 watercourses with a mean Nash-Sutcliffe efficiency index of 0.44. Increasing long-term trends were observed in 149 (70%) of the watercourses, and intra-annual variation in TOC far exceeded inter-annual variation. The average influences of the discharge and seasonality terms on intra-annual variations in daily TOC concentration were 1.4 and 1.3 mg l − 1 (13 and 12% of the mean annual TOC), respectively. The average increase in TOC was 0.17 mg l − 1 year − 1 (1.6% year − 1 ). Multivariate regression with over 90 different catchment characteristics explained 21% of the spatial variation in the linear trend coefficient, less than 20% of the variation in the discharge coefficient and 73% of the spatial variation in mean TOC. Specific discharge, water residence time, the variance of daily precipitation, and lake area, explained 45% of the spatial variation in the amplitude of the TOC seasonality. Because the main drivers of temporal variability in TOC are seasonality and discharge, first-order estimates of the influences of climatic variability and change on TOC concentration should be predictable if the studied catchments continue to respond similarly.

Science of the Total Environment↗

USGS2019

Flood-frequency estimates for Ohio streamgages based on data through water year 2015 and techniques for estimating flood-frequency characteristics of rural, unregulated Ohio streams

Estimates of the magnitudes of annual peak streamflows with annual exceedance probabilities of 0.5, 0.2, 0.1, 0.04, 0.02, 0.01, and 0.002 (equivalent to recurrence intervals of 2-, 5-, 10-, 25-, 50-, 100-, and 500-years, respectively) were computed for 391 streamgages in Ohio and adjacent states based on data collected through the 2015 water year. The flood-frequency estimates were computed following guidance outlined in Bulletin 17C, developed by the Advisory Committee on Water Information. The Bulletin 17C guidelines retain the basic statistical framework of the superseded Bulletin 17B guidelines; however, the Bulletin 17C guidelines add several enhancements including an improved method of moments approach for fitting the log-Pearson Type III (LPIII) distribution to the flood peaks (called the expected moments algorithm), a generalization of the Grubbs Beck low-outlier test (called the Multiple Grubbs Beck test) that permits identification of multiple potentially influential low floods, and new methods for estimating regional skew and uncertainty. Equations for estimating flood-frequency characteristics at ungaged sites on rural, unregulated streams in Ohio were developed with a two-step process involving ordinary least-squares and generalized least-squares regression techniques. Data from 333 streamgages with 10 or more years of unregulated record were screened for redundancy and a regression dataset was selected that was composed of flood-frequency and basin-characteristic data for 275 streamgages in Ohio and adjacent states. Two sets of equations were developed—one set, referred to as the “simple model,” uses regression region and drainage area as regressor variables, and a second set, referred to as the “full model,” uses regression region, drainage area, main-channel slope, and the percentage of the watershed covered by water and wetlands as regressor variables. The average standard errors of prediction ranged from about 40.5 to 46.5 percent for the simple-model equations and from about 37.2 to 40.3 percent for the full-model equations. For sites meeting the rural, unregulated criteria, flood-frequency estimates determined by means of LPIII analyses are reported along with weighted flood-frequency estimates, computed as a function of the LPIII estimates and the regression estimates. For sites with homogenous periods of regulation, flood-frequency estimates determined by means of LPIII analyses are reported. Ninety-five percent confidence limits are reported for all estimates. Values of regressor variables were determined from digital spatial datasets by means of a geographic information system (GIS). The GIS datasets and the new full-model equations have been incorporated into Ohio’s StreamStats application, a web-based, GIS-backed system designed to facilitate the estimation of streamflow statistics at ungaged locations on streams. Seasonal patterns in peak flows were assessed for 295 streamgages in Ohio. Annual peak flows occurred most frequently between January and April, with March having the highest frequency of occurrence. The month with the fewest number of annual peaks was October. Peak-of-record flows occurred most frequently in March, followed by January (months in which two of Ohio’s most severe widespread floods in recent history occurred). None of the peak-of-record flows occurred in October and only two occurred in November. Temporal trend in annual peak flows were assessed for 133 streamgages on unregulated streams in Ohio with 30 or more years of systematic record. Trends were assessed by computing the rank correlation (as measured with the two-sided Kendall’s tau statistic) between time and annual peak flows. Weak but statistically significant trends were indicated at 15 of the 133 streamgages. Of the 15 streamgages with significant trend in annual peak flows, 12 had an upward trend (positive tau) and 3 had a downward trend (negative tau). All 12 streamgages with positive tau values were at latitudes north of 40°33', and streamgages with negative tau values were at latitudes south of 40°33'.

Ohio↗

USGS2014

Merging remote sensing data and national agricultural statistics to model change in irrigated agriculture

Over 22 million hectares (ha) of U.S. croplands are irrigated. Irrigation is an intensified agricultural land use that increases crop yields and the practice affects water and energy cycles at, above, and below the land surface. Until recently, there has been a scarcity of geospatially detailed information about irrigation that is comprehensive, consistent, and timely to support studies tying agricultural land use change to aquifer water use and other factors. This study shows evidence for a recent overall net expansion of 522 thousand ha across the U.S. (2.33%) and 519 thousand ha (8.7%) in irrigated cropped area across the High Plains Aquifer (HPA) from 2002 to 2007. In fact, over 97% of the net national expansion in irrigated agriculture overlays the HPA. We employed a modeling approach implemented at two time intervals (2002 and 2007) for mapping irrigated agriculture across the conterminous U.S. (CONUS). We utilized U.S. Department of Agriculture (USDA) county statistics, satellite imagery, and a national land cover map in the model. The model output, called the Moderate Resolution Imaging Spectroradiometer (MODIS) Irrigated Agriculture Dataset for the U.S. (MIrAD-US), was then used to reveal relatively detailed spatial patterns of irrigation change across the nation and the HPA. Causes for the irrigation increase in the HPA are complex, but factors include crop commodity price increases, the corn ethanol industry, and government policies related to water use. Impacts of more irrigation may include shifts in local and regional climate, further groundwater depletion, and increasing crop yields and farm income.

Agricultural Systems↗

USGS2021

Urbanization impacts on evapotranspiration across various spatio-temporal scales

Urbanization has been shown to locally increase the nighttime temperatures creating urban heat islands, which partly arise due to evapotranspiration (ET) reduction. It is unclear how the direction and magnitude of the change in local ET due to urbanization varies globally across different climatic regimes. This knowledge gap is critical, both for the key role of ET in the energy and water balance accounting for the majority of local precipitation, and for reducing the urban heat island effect. We explore and assess the impacts of urbanization on monthly and mean annual ET across a range of landscapes from local to global spatial scales. Remotely sensed land cover and ET available at 1 km resolution are used to quantify the differences in ET between urban and surrounding non-urban areas across the globe. The observed patterns show that the statistically significant difference between urban and non-urban ET can be estimated to first order as a function of local hydroclimate, with arid regions seeing increased ET, and humid regions showing decreased ET. Cities under cold climates also evaporate more than their non-urban surroundings during the winter, as the urban micro-climate has increased energy availability resulting from human activities. Increased ET in arid cities arises from municipal water withdrawals and increased irrigation during drought conditions. These results can help inform planners to improve the integration of environmental conditions into the design and management of urban landscapes.

Earth's Future↗

USGS2008

Monitoring on-orbit stability of Terra MODIS and Landsat 7 ETM+ reflective solar bands using Railroad Valley Playa, Nevada (RVPN) test site

The Moderate Resolution Imaging Spectroradiometer (MODIS) Proto-Flight Model (PFM), launched on December 18, 1999, aboard NASA's Earth Observing System (EOS) Terra satellite has 20 reflective solar bands (RSB) with wavelengths ranging from 0.41 to 2.1 mum over a wide field of view (plusmn55deg). The Landsat 7 (L7) Enhanced Thematic Mapper Plus (ETM+) sensor was launched on April 15, 1999, and has six spectral bands located in the visible and shortwave infrared (SWIR) part of the electromagnetic spectrum (0.4 - 2.5 mum). The ETM+ belongs to the family of Thematic Mapper sensors flown on previous Landsat missions. In this study, over 75 cloud-free nadir near-simultaneous images over Railroad Valley Playa, Nevada (RVPN) were chosen covering entire missions of both sensors. RVPN (38.5degN and 115.7degW), located between the cities of Ely and Tonopah, Nevada, USA, is a high reflectance site with very high spatial, spectral, and temporal uniformity. It is referenced to the Worldwide Reference System-2 (WRS-2) with path 40 and row 33. Homogeneous regions of interest (ROI) were chosen and cross-calibration was performed using an image statistics approach to monitor the long-term stability of the two sensors.

Nevada↗

USGS2012

Digital spatial data for observed, predicted, and misclassification errors for observations in the training dataset for nitrate and arsenic concentrations in basin-fill aquifers in the Southwest Principal Aquifers study area

This product "Digital spatial data for observed, predicted, and misclassification errors for observations in the training dataset for nitrate and arsenic concentrations in basin-fill aquifers in the Southwest Principal Aquifers study area" is a 1:250,000-scale point spatial dataset developed as part of a regional Southwest Principal Aquifers (SWPA) study (Anning and others, 2012). The study examined the vulnerability of basin-fill aquifers in the southwestern United States to nitrate contamination and arsenic enrichment. Statistical models were developed by using the random forest classifier algorithm to predict concentrations of nitrate and arsenic across a model grid that represents local- and basin-scale measures of source, aquifer susceptibility, and geochemical conditions.

Arizona, California, Colorado, Idaho, Nevada, New ↗