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Inferring river bathymetry via Image-to-Depth Quantile Transformation (IDQT)

Conventional, regression-based methods of inferring depth from passive optical image data undermine the advantages of remote sensing for characterizing river systems. This study introduces and evaluates a more flexible framework, Image-to-Depth Quantile Transformation (IDQT), that involves linking the frequency distribution of pixel values to that of depth. In addition, a new image processing workflow involving deep water correction and Minimum Noise Fraction (MNF) transformation can reduce a hyperspectral data set to a single variable related to depth and thus suitable for input to IDQT. Applied to a gravel bed river, IDQT avoided negative depth estimates along channel margins and underpredictions of pool depth. Depth retrieval accuracy (R25 0.79) and precision (0.27 m) were comparable to an established band ratio-based method, although a small shallow bias (0.04 m) was observed. Several ways of specifying distributions of pixel values and depths were evaluated but had negligible impact on the resulting depth estimates, implying that IDQT was robust to these implementation details. In essence, IDQT uses frequency distributions of pixel values and depths to achieve an aspatial calibration; the image itself provides information on the spatial distribution of depths. The approach thus reduces sensitivity to misalignment between field and image data sets and allows greater flexibility in the timing of field data collection relative to image acquisition, a significant advantage in dynamic channels. IDQT also creates new possibilities for depth retrieval in the absence of field data if a model could be used to predict the distribution of depths within a reach.

Water Resources Research↗

Remote sensing large-wood storage downstream of reservoirs during and after dam removal: Elwha River, Washington, USA

Large wood is an integral part of many rivers, often defining river-corridor morphology and habitat, but its occurrence, magnitude, and evolution in a river system are much less well understood than the sedimentary and hydraulic components, and due to methodological limitations, have seldom previously been mapped in substantial detail. We present a new method for this, representing a substantial advance in automated deep-learning-based image segmentation. From these maps, we measured large wood and sediment deposits from high-resolution orthoimages to explore the dynamics of large wood in two reaches of the Elwha River, Washington, USA, between 2012 and 2017 as it adjusted to upstream dam removals. The data set consists of a time series of orthoimages (12.5-cm resolution) constructed using Structure-from-Motion photogrammetry on imagery from 14 aerial surveys. Model training was optimized to yield maximum accuracy for estimated wood areas, compared to manually digitized wood, therefore model development and intended application were coupled. These fully reproducible methods and model resulted in a maximum of 15% error between observed and estimated total wood areas and wood deposit size-distributions over the full spatio-temporal extent of the data. Areal extent of wood in the channel margin approximately doubled in the years following dam removal, with greatest increases in large wood in wider, lower-gradient sections. Large-wood deposition increased between the start of dam removal (2011) and winter 2013, then plateaued. Sediment bars continued to grow up until 2016/17, assisted by a partially static wood framework deposited predominantly during the period up to winter 2013.

Washington↗

Selenium and other elements in freshwater fishes from the irrigated San Joaquin valley, California

Arsenic (As), chromium (Cr), mercury (Hg), and selenium (Se) were measured in composite whole-body samples of five fishes — bluegill ( Lepomis macrochirus ), common carp ( Cyprinus carpio ), mosquitofish ( Gambusia affinis ), largemouth bass ( Micropterus salmoides ), and Sacramento blackfish ( Orthodon microlepidotus ) — from the San Joaquin River system to determine if concentrations were elevated from exposure to agricultural subsurface (tile) drainage. Except for Cr, the concentrations of these elements in fishes from one or more sites were elevated; however, only Se approached concentrations that may adversely affect survival, growth, or reproduction in warm water fishes. Moreover, only Se among the four measured elements exhibited a geographic (spatial) pattern that coincided with known inflows of tile drainage to the San Joaquin River and its tributaries. Historical data from the Grassland Water District (Grasslands; a region exposed to concentrated tile drainage) suggested that concentrations of Se in fishes were at maximum during or shortly after 1984 and have been slightly lower since then. The recent decline of Se concentrations in fishes from the Grasslands could be temporary if additional acreages of irrigated lands in this portion of the San Joaquin Valley must be tile-drained to protect agricultural crops from rising groundwater tables

California↗

Salinity tolerance of non-native suckermouth armoured catfish (Loricariidae: Pterygoplichthys) in south-eastern Mexico: Implications for invasion and dispersal

1. Salinity tolerance is one of several important physiological attributes that determine invasion success and the pattern of dispersal of introduced aquatic organisms. Introduced freshwater fishes able to tolerate elevated salinities have the potential to invade and exploit brackish-water (mixohaline) environments and use estuaries and coastal waters as 'bridges' for dispersing from one coastal river system to another. 2. Several members of the neotropical suckermouth armoured catfish genus Pterygoplichthys (Siluriformes: Loricariidae) have established non-native populations in inland waters of North and Central America, Asia and islands in the Caribbean, and Pacific and Indian oceans. Loricariids are generally considered to be strictly freshwater; but a few naturally occur in mesohaline habitats. 3. Catch and habitat data from 2004–2005 and 2009–2011 fish surveys in the Grijalva–Usumacinta River delta region (south-eastern Mexico) confirmed that introduced Pterygoplichthys populations established in upstream freshwater sites (where these catfish are abundant) have recently dispersed into downstream oligohaline and mesohaline estuarine habitats. During 2009–2011 surveys, these non-native catfish — tentatively identified as P. pardalis or its hybrids — were found in sites with salinities ranging from 1 to 8 ppt (mean 5.2 ppt). 4. Acute-salinity experiments were conducted with Pterygoplichthys (110–302 mm standard length, N =140) captured in the Grijalva–Usumacinta Basin to determine upper salinity tolerance levels. Tests demonstrated that individuals maintained in salinities of 0.2 ppt were able to survive abrupt (acute) exposure to salinities up to 10 ppt with little mortality over 10 days (240 h experimental endpoint). A few individuals survived abrupt exposure to 11 and 12 ppt for 20 or more hours, although none survived more than a few hours at 16 ppt or greater. 5. These field and experimental results provide quantitative evidence that non-native Pterygoplichthys are physiologically capable of surviving mesohaline conditions for extended periods and that non-native populations in Mexico are invading and presumably exploiting estuarine and other coastal environments, perhaps as feeding areas and potentially as dispersal routes.

Grijalva–Usumacinta River delta↗

Dissolved oxygen analysis, TMDL model comparison, and particulate matter shunting—Preliminary results from three model scenarios for the Klamath River upstream of Keno Dam, Oregon

Efforts are underway to identify actions that would improve water quality in the Link River to Keno Dam reach of the Upper Klamath River in south-central Oregon. To provide further insight into water-quality improvement options, three scenarios were developed, run, and analyzed using previously calibrated CE-QUAL-W2 hydrodynamic and water-quality models. Additional scenarios are under development as part of this ongoing study. Most of these scenarios evaluate changes relative to a "current conditions" model, but in some cases a "natural conditions" model was used that simulated the reach without the effect of point and nonpoint sources and set Upper Klamath Lake at its Total Maximum Daily Load (TMDL) targets. These scenarios were simulated using a model developed by the U.S. Geological Survey (USGS) and Watercourse Engineering, Inc. for the years 2006–09, referred to here as the "USGS model." Another model of the reach was developed by Tetra Tech, Inc. for years 2000 and 2002 to support the Klamath River TMDL process; that model is referred to here as the "TMDL model." The three scenarios described in this report included (1) an analysis of whether this reach of the Upper Klamath River would be in compliance with dissolved oxygen standards if sources met TMDL allocations, (2) an application of more recent datasets to the TMDL model with comparison to results from the USGS model, and (3) an examination of the effect on dissolved oxygen in the Klamath River if particulate material were stopped from entering Klamath Project diversion canals. Updates and modifications to the USGS model are in progress, so in the future these scenarios will be reanalyzed with the updated model and the interim results presented here will be superseded. Significant findings from this phase of the investigation include: * The TMDL analysis used depth-averaged dissolved oxygen concentrations from model output for comparison with dissolved oxygen standards. The Oregon dissolved oxygen standards do not specify whether the numeric criteria are based on depth-averaged dissolved oxygen concentration; this was an interpretation of the standards rule by the Oregon Department of Environmental Quality (ODEQ). In this study, both depth-averaged and volume-averaged dissolved oxygen concentrations were calculated from model output. Results showed that modeled depth-averaged concentrations typically were lower than volume-averaged dissolved oxygen concentrations because depth-averaging gives a higher weight to small volume areas near the channel bottom that often have lower dissolved oxygen concentrations. Results from model scenarios in this study are reported using volume-averaged dissolved oxygen concentrations. * Under all scenarios analyzed, violations of the dissolved oxygen standard occurred most often in summer. Of the three dissolved oxygen criteria that must be met, the 30-day standard was violated most frequently. Under the base case (current conditions), fewer violations occurred in the upstream part of the reach. More violations occurred in the down-stream direction, due in part to oxygen demand from the decay of algae and organic matter from Link River and other inflows. * A condition in which Upper Klamath Lake and its Link River outflow achieved Upper Klamath Lake TMDL water-quality targets was most effective in reducing the number of violations of the dissolved oxygen standard in the Link River to Keno Dam reach of the Klamath River. The condition in which point and nonpoint sources within the Link River to Keno Dam reach met Klamath River TMDL allocations had no effect on dissolved oxygen compliance in some locations and a small effect in others under current conditions. On the other hand, meeting TMDL allocations for nonpoint and point sources was predicted to be important in meeting dissolved oxygen criteria when Upper Klamath Lake and Link River also met Upper Klamath TMDL water-quality targets. * The location of greatest dissolved oxygen improvement from nutrient and organic matter reductions was downstream from point and nonpoint source inflows because time and distance are required for decay to occur and for oxygen demand to be exerted. * After assessing compliance with dissolved oxygen standards at all 102 model segments in the Link River to Keno Dam reach, it was determined that the seven locations used by ODEQ appear to be a representative subset of the reach for dissolved oxygen analysis. * The USGS and TMDL models were qualitatively compared by running both models for the 2006–09 period but preserving the essential characteristics of each, such as organic matter partitioning, bathymetric representation, and parameter rates. The analysis revealed that some constituents were not greatly affected by the differing algorithms, rates, and assumptions in the two models. Conversely, other constituents, especially organic matter, were simulated differently by the two models. Organic matter in this river system is best represented by a mixture of relatively labile particulate material and a substantial concentration of refractory dissolved material. In addition, the use of a first-order sediment oxygen demand, as in the USGS model, helps to capture the seasonal and dynamic effect of settled organic and algal material. * Simulation of shunting (diverting) particulate material away from the intake of four Klamath Project diversion canals, so that the material stayed in the river and out of the Project area, caused higher concentrations of particulate material to occur in the river. In all cases modeled, the increase in in-river particulate material also produced decreased dissolved oxygen concentrations and an increase in the number of days when dissolved oxygen standards were violated. * If particulate material were shunted back into the river at the Klamath Project diversion canals, less organic matter and nutrients would be taken into the Klamath Project area and the Lost River basin, resulting in return flows to the Klamath River via Lost River Diversion Channel that may have reduced nutrient concentrations. Model scenarios bracketing potential end-member nutrient concentrations showed that the composition of the return flows had little to no effect on dissolved oxygen compliance under simulated conditions.

Oregon↗

Tectonically driven integration of the 4.8 Ma Colorado River USA tracked with detrital sanidine and fish genetics

The development of the continental-scale Colorado River system, western USA, from 8 to 4.8 Ma, is revealed using 60-40 Ma detrital sanidine tracer grains and fish phylogeny. Here we show that precursor paleoriver segments became integrated north to south as traced by 60-40 Ma sand grains that were derived from the north and sequentially appeared in the 25-8 Ma Browns Park Formation of Utah, 7-6 Ma upper Bidahochi Formation of Arizona, and 4.8 Ma Bouse Formation of the lower Colorado River and proto Gulf of California. This timing is mimicked by molecular clock estimates of divergence times among fish lineages. River integration was a response to headwater uplifts in the Yellowstone hotspot track and Rocky Mountains. 40 Ar/ 39 Ar ages refine the timing for mantle-drips that caused subsidence, then uplift, of depositional basins that influenced the integration pathway and tempo. The ~ 3-million-year timescale suggests that multiscale mantle-driven uplift, rather than lake spillover, was the primary driver for integration of the proto-Colorado River through Grand Canyon.

Colorado River↗

Conservation genetics of the alligator snapping turtle: cytonuclear evidence of range-wide bottleneck effects and unusually pronounced geographic structure

A previous mtDNA study indicated that female-mediated gene flow was extremely rare among alligator snapping turtle populations in different drainages of the Gulf of Mexico. In this study, we used variation at seven microsatellite DNA loci to assess the possibility of male-mediated gene flow, we augmented the mtDNA survey with additional sampling of the large Mississippi River System, and we evaluated the hypothesis that the consistently low within-population mtDNA diversity reflects past population bottlenecks. The results show that dispersal between drainages of the Gulf of Mexico is rare ( F ST msat = 0.43, Φ STmtDNA = 0.98). Past range-wide bottlenecks are indicated by several genetic signals, including low diversity for microsatellites (1.1–3.9 alleles/locus; H e = 0.06–0.53) and mtDNA ( h = 0.00 for most drainages; π = 0.000–0.001). Microsatellite data reinforce the conclusion from mtDNA that the Suwannee River population might eventually be recognized as a distinct taxonomic unit. It was the only population showing fixation or near fixation for otherwise rare microsatellite alleles. Six evolutionarily significant units are recommended on the basis of reciprocal mtDNA monophyly and high levels of microsatellite DNA divergence.

Gulf of Mexico↗

Regional effects of agricultural conservation practices on nutrient transport in the Upper Mississippi River Basin

Despite progress in the implementation of conservation practices, related improvements in water quality have been challenging to measure in larger river systems. In this paper we quantify these downstream effects by applying the empirical U.S. Geological Survey water-quality model SPARROW to investigate whether spatial differences in conservation intensity were statistically correlated with variations in nutrient loads. In contrast to other forms of water quality data analysis, the application of SPARROW controls for confounding factors such as hydrologic variability, multiple sources and environmental processes. A measure of conservation intensity was derived from the USDA-CEAP regional assessment of the Upper Mississippi River and used as an explanatory variable in a model of the Upper Midwest. The spatial pattern of conservation intensity was negatively correlated ( p = 0.003) with the total nitrogen loads in streams in the basin. Total phosphorus loads were weakly negatively correlated with conservation ( p = 0.25). Regional nitrogen reductions were estimated to range from 5 to 34% and phosphorus reductions from 1 to 10% in major river basins of the Upper Mississippi region. The statistical associations between conservation and nutrient loads are consistent with hydrological and biogeochemical processes such as denitrification. The results provide empirical evidence at the regional scale that conservation practices have had a larger statistically detectable effect on nitrogen than on phosphorus loadings in streams and rivers of the Upper Mississippi Basin.

Environmental Science & Technology↗

Influence of dams on sauger population structure and hybridization with introduced walleye

Dams have negatively affected freshwater biodiversity throughout the world. These negative effects tend to be exacerbated for aquatic taxa with migratory life histories, and for taxa whose habitat is fundamentally altered by the formation of large reservoirs. Sauger ( Sander candadensis ; Percidae), large-bodied migratory fishes native to North America, have seen population declines over much of the species' range, and dams are often implicated for their role in blocking access to spawning habitat and otherwise negatively affecting river habitat. Furthermore, hybridization appears to be more frequent between sauger and walleye in the reservoirs formed by large dams. In this study, we examine the role of dams in altering sauger population connectivity and facilitating hybridization with introduced walleye in Wyoming's Wind River and Bighorn River systems. We collected genomic data from individuals sampled over a large spatial scale and replicated sampling throughout the spawning season, with the intent to capture potential variation in hybridization prevalence or genomic divergence between sauger with different life histories. The timing of sampling was not related to hybridization prevalence or population divergence, suggesting limited genetic differences between sauger spawning in different time and places. Overall, there was limited hybridization detected, however, hybridization was most prevalent in Boysen Reservoir (a large impounded section of the Wind River). Dams in the lower Wind River and upper Bighorn River were associated with population divergence between sauger upstream and downstream of the dams, and demographic models suggest that this divergence has occurred in concordance with the construction of the dam. Sauger upstream of the dams exhibited substantially lower estimates of genetic diversity, which implies that disrupted connectivity between Wind River and Bighorn River sauger populations may already be causing negative demographic effects. This research points towards the importance of considering the evolutionary consequences of dams on fish populations in addition to the threats they pose to population persistence.

Wyoming↗

Spread of hybridization between native westslope cutthroat trout, Oncorhynchus clarki lewisi, and nonnative rainbow trout, Oncorhynchus mykiss

We examined spatial and temporal patterns of hybridization between native westslope cutthroat trout, Oncorhynchus clarki lewisi , and nonnative rainbow trout, O. mykiss , in streams of the Flathead River system in Montana, U.S.A. We detected hybridization in 24 of 42 sites sampled from 1998 to 2001. We found new Oncorhynchus mykiss introgression in seven of 11 sample populations that were determined to be nonhybridized in 1984. Patterns of spatial autocorrelation and linkage disequilibrium indicated that hybridization is spreading among sites and is advancing primarily via post-F 1 hybrids. Although hybridized populations were distributed widely throughout the study area, the genetic contribution from O. mykiss decreased with increasing upstream distance from the Flathead River mainstem, suggesting that O. mykiss introgression is spreading in an upstream direction. The spread of hybridization may be constrained more by demographic than by environmental factors, given that ( i ) hybridized populations generally encompassed the range of environmental variability in nonhybridized populations, and ( ii ) hybridization status was more strongly associated with neighborhood statistics than measured environmental gradients.

Montana↗

Observations on unmeasured rivers

An analysis of data on hydraulic parameters collected during a single boat trip down a river system is presented, plotted in form of the hydraulic geometry. A dimensionless rating curve is used to estimate bankfull and average discharge for basins of various sizes. When compared with gaging station data, estimates of bankfull discharge are as consistent and possibly equal in accuracy to estimates made from gaging station data. Estimates of average discharge are less consistent; within the range of drainage areas represented by the gaging stations, errors of estimate vary from 0 to 58 percent. Local variations of bed material size along the river are compensated mostly by changes in local channel slope and roughness and do not much affect the progressive downstream changes in width, depth, or velocity.

Geografiska Annaler, Series A: Physical Geography↗

Age, growth, mortality, and abundance of lake sturgeon in the Grasse River, New York, USA

An increased understanding of lake sturgeon ( Acipenser fulvescens ) population dynamics is a key requirement for successful management efforts. Little is known regarding the Grasse River population of lake sturgeon except that it is one of a few populations in New York State where spawning has been documented. Thus our purpose was to assess the current status of lake sturgeon in the Grasse River system, including age, growth, mortality, and abundance. Age was determined for 196 of 211 lake sturgeon by examination of sectioned pectoral fin rays. Ages ranged from 0 to 32 years and the annual mortality rate for fish between ages 7 and 14 was 16.8%. The weight ( W , g) to total length (TL, mm) relationship was W = 1.281 x 10 -6 TL 3.202 . The von Bertalanffy growth equation was TL = 1913(1- e -0.0294( t +9.5691) ). While the range of observed ages was similar to that of nearby St. Lawrence River populations, mean weight at age for an individual at 1000 mm TL was lower than that observed for lake sturgeon within Lake St. Francis of the St. Lawrence River. Predicted growth based on von Bertalanffy parameters was similar to that observed for the nearby Lake St. Francis. An open population estimator using the POPAN sub-module in the Program MARK produced an abundance estimate of 793 lake sturgeon (95% CI = 337-1249).

Journal of Applied Ichthyology↗

Interagency Flood Risk Management (InFRM) watershed hydrology assessment for the Neches River basin. Appendix D: RiverWare analyses

RiverWare is a river system modeling tool developed by CADSWES (Center of Advanced Decision Support for Water and Environmental Systems) that allows the user to simulate complex reservoir operations and perform period-of-record analyses for different scenarios. For the InFRM hydrology studies, RiverWare is used to generate a homogeneous regulated POR by simulating the basin as if the reservoirs and their current rule sets had been present in the basin for the entire time period. Statistical analyses can then be performed on the extended records at the gages. This report summarizes the RiverWare portion of the hydrologic analysis being completed for the InFRM Hydrology study of the Neches River Basin. The RiverWare model described in this chapter presents development of the Neches River Basin hydrology, which mimics current operational conditions. The use of the RiverWare program allows for data extension to periods prior to dam construction. The utilization of longer streamgage record improves discharge frequency results and increases the confidence of the analysis being performed. The modeling evaluation criteria are: (1) evaluate output based on validating policies and functions, and (2) prioritize operation based on surcharge and flood control. A detailed explanation of the Neches River Basin POR hydrology will be in a later section. Calibration results will also be shown that illustrate model performance since the Salt Water Barrier (SWB) construction was completed in 2005. The time window simulation run is for water year (WY) 2005 – WY 2018. This time window also captures the time when Hurricane Harvey occurred (late August of 2017). Each simulated water year was inspected individually to better validate the results. After calibration, a general run for January 01, 1929 through WY 2018 was made. Historical pool elevations along with observed inflows and outflows were compared against the model simulated results. More emphasis was put on B.A. Steinhagen’s operations because the dam captures two major rivers (i.e. the Angelina and the Neches Rivers). Results were inspected closely for B.A. Steinhagen’s pool and releases, the simulated discharges at the Neches at Evadale gage, and the simulated discharges at the SWB at Beaumont, Texas.

Texas↗

Watershed hydrology assessment for the Lower Colorado River Basin. Appendix D: RiverWare analyses

RiverWare is a river system modeling tool developed by CADSWES (Center of Advanced Decision Support for Water and Environmental Systems) that allows the user to simulate complex reservoir operations and perform period-of-record analyses for different scenarios. For the InFRM hydrology studies, RiverWare is used to generate a homogeneous regulated POR by simulating the basin as if the reservoirs and their current rule sets had been present in the basin for the entire time period. Statistical analyses can then be performed on the extended records at the gages. This report summarizes the RiverWare portion of the hydrologic analysis being completed for the InFRM Hydrology study of the Colorado River Basin. The RiverWare model described in this chapter presents development of the Colorado River Basin hydrology, which mimics current operational conditions. The use of the RiverWare program allows for data extension to periods prior to dam construction. The utilization of longer gage record improves discharge frequency results and increases the confidence of the analysis being performed. The modeling evaluation criteria are: (1) evaluate output based on validating policies and functions, and (2) prioritize operation based on surcharge and flood control. A detailed explanation of the Colorado River Basin POR hydrology will be in a later section. Calibration results will also be shown that illustrate the overall model performance for the POR. The time window simulation run is for January 01, 1930 – September 30, 2019. This time window captures all big events occurred over the Colorado River basin. Each simulated water year was inspected individually to better validate the results. Historical pool elevations along with observed inflows and outflows were compared against the model simulated results.

Texas↗

Rapid incision of the Colorado River in Glen Canyon - insights from channel profiles, local incision rates, and modeling of lithologic controls

The Colorado River system in southern Utah and northern Arizona is continuing to adjust to the baselevel fall responsible for the carving of the Grand Canyon. Estimates of bedrock incision rates in this area vary widely, hinting at the transient state of the Colorado and its tributaries. In conjunction with these data, we use longitudinal profiles of the Colorado and tributaries between Marble Canyon and Cataract Canyon to investigate the incision history of the Colorado in this region. We find that almost all of the tributaries in this region steepen as they enter the Colorado River. The consistent presence of oversteepened reaches with similar elevation drops in the lower section of these channels, and their coincidence within a corridor of high local relief along the Colorado, suggest that the tributaries are steepening in response to an episode of increased incision rate on the mainstem. This analysis makes testable predictions about spatial variations in incision rates; these predictions are consistent with existing rate estimates and can be used to guide further studies. We also present cosmogenic nuclide data from the Henry Mountains of southern Utah. We measured in situ 10 Be concentrations on four gravel-covered strath surfaces elevated from 1 m to 110 m above Trachyte Creek. The surfaces yield exposure ages that range from approximately 2??5 ka to 267 ka and suggest incision rates that vary between 350 and 600 m/my. These incision rates are similar to other rates determined within the high-relief corridor. Available data thus support the interpretation that tributaries of the Colorado River upstream of the Grand Canyon are responding to a recent pulse of rapid incision on the Colorado. Numerical modeling of detachment-limited bedrock incision suggests that this incision pulse is likely related to the upstream-dipping lithologic boundary at the northern edge of the Kaibab upwarp. ?? 2009 John Wiley & Sons, Ltd.

Earth Surface Processes and Landforms↗

Seasonal uranium distributions in the coastal waters off the Amazon and Mississippi Rivers

The chemical reactivity of uranium was investigated across estuarine gradients from two of the world’s largest river systems: the Amazon and Mississippi. Concentrations of dissolved (<0.45 μm) uranium (U) were measured in surface waters of the Amazon shelf during rising (March 1990), flood (June 1990) and low (November 1991) discharge regimes. The dissolved U content was also examined in surface waters collected across estuarine gradients of the Mississippi outflow region during April 1992, August 1993, and November (1993). All water samples were analyzed for U by isotope dilution inductively coupled plasma mass spectrometry (ICP-MS). In Amazon shelf surface waters uranium increased nonconservatively from about 0.01 μg I −1 at the river’s mouth to over 3 μg I −1 at the distal site, irrespective of river discharge stage. Observed large-scale U removal at salinities generally less than 15 implies a) that riverine dissolved U was extensively adsorbed by freshly-precipitated hydrous metal oxides (e.g., FeOOH, MnO 2 ) as a result of flocculation and aggregation, and b) that energetic resuspension and reworking of shelf sediments and fluid muds on the Amazon shelf released a chemically reactive particle/colloid to the water column which can further scavenge dissolved U across much of the estuarine gradient. In contrast, the estuarine chemistry of U is inconclusive within surface waters of the Mississippi shelf-break region. U behavior is most likely controlled less by traditional sorption and/or desorption reactions involving metal oxides or colloids than by the river’s variable discharge regime (e.g., water parcel residence time during estuarine mixing, nature of particulates, sediment storage and resuspension in, the confined lower river), and plume dispersal. Mixing of the thin freshwater lens into ambient seawater is largely defined by wind-driven rather than physical processes. As a consequence, in the Mississippi outflow region uranium predominantly displays conservative behavior; removal is evident only during anomalous river discharge regimes. ‘Products-approach’ mixing experiments conducted during the Flood of 1993 suggest the importance of small particles and/or colloids in defining a depleted U versus salinity distribution.

Louisiana↗

Challenges in merging fisheries research and management: The Upper Mississippi River experience

The Upper Mississippi River System (UMRS) is a geographically diverse basin extending 10?? north temperate latitude that has produced fishes for humans for millennia. During European colonization through the present, the UMRS has been modified to meet multiple demands such as navigation and flood control. Invasive species, notably the common carp, have dominated fisheries in both positive and negative ways. Through time, environmental decline plus reduced economic incentives have degraded opportunities for fishery production. A renewed focus on fisheries in the UMRS may be dawning. Commercial harvest and corresponding economic value of native and non-native species along the river corridor fluctuates but appears to be increasing. Recreational use will depend on access and societal perceptions of the river. Interactions (e. g., disease and invasive species transmission) among fish assemblages within the UMRS, the Great Lakes, and other lakes and rivers are rising. Data collection for fisheries has varied in intensity and contiguousness through time, although resources for research and management may be growing. As fisheries production likely relies on the interconnectivity of fish populations and associated ecosystem processes among river reaches (e. g., between the pooled and unpooled UMRS), species-level processes such as genetics, life-history interactions, and migratory behavior need to be placed in the context of broad ecosystem- and landscape-scale restoration. Formal communication among a diverse group of researchers, managers, and public stakeholders crossing geographic and disciplinary boundaries is necessary through peer-reviewed publications, moderated interactions, and the embrace of emerging information technologies. ?? Springer Science+Business Media B.V. 2010.

Hydrobiologia↗

Physical habitat simulation system reference manual: version II

There are four major components of a stream system that determine the productivity of the fishery (Karr and Dudley 1978). These are: (1) flow regime, (2) physical habitat structure (channel form, substrate distribution, and riparian vegetation), (3) water quality (including temperature), and (4) energy inputs from the watershed (sediments, nutrients, and organic matter). The complex interaction of these components determines the primary production, secondary production, and fish population of the stream reach. The basic components and interactions needed to simulate fish populations as a function of management alternatives are illustrated in Figure I.1. The assessment process utilizes a hierarchical and modular approach combined with computer simulation techniques. The modular components represent the "building blocks" for the simulation. The quality of the physical habitat is a function of flow and, therefore, varies in quality and quantity over the range of the flow regime. The conceptual framework of the Incremental Methodology and guidelines for its application are described in "A Guide to Stream Habitat Analysis Using the Instream Flow Incremental Methodology" (Bovee 1982). Simulation of physical habitat is accomplished using the physical structure of the stream and streamflow. The modification of physical habitat by temperature and water quality is analyzed separately from physical habitat simulation. Temperature in a stream varies with the seasons, local meteorological conditions, stream network configuration, and the flow regime; thus, the temperature influences on habitat must be analysed on a stream system basis. Water quality under natural conditions is strongly influenced by climate and the geological materials, with the result that there is considerable natural variation in water quality. When we add the activities of man, the possible range of water quality possibilities becomes rather large. Consequently, water quality must also be analysed on a stream system basis. Such analysis is outside the scope of this manual, which concentrates on simulation of physical habitat based on depth, velocity, and a channel index. The results form PHABSIM can be used alone or by using a series of habitat time series programs that have been developed to generate monthly or daily habitat time series from the Weighted Usable Area versus streamflow table resulting from the habitat simulation programs and streamflow time series data. Monthly and daily streamflow time series may be obtained from USGS gages near the study site or as the output of river system management models.

Report↗