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At least 649 records · Page 36Linked to original sources
USGS2020

Applications of deep convolutional neural networks to predict length, circumference, and weight from mostly dewatered images of fish

Simple biometric data of fish aid fishery management tasks such as monitoring the structure of fish populations and regulating recreational harvest. While these data are foundational to fishery research and management, the collection of length and weight data through physical handling of the fish is challenging as it is time consuming for personnel and can be stressful for the fish. Recent advances in imaging technology and machine learning now offer alternatives for capturing biometric data. To investigate the potential of deep convolutional neural networks to predict biometric data, several regressors were trained and evaluated on data stemming from the FishL™ Recognition System and manual measurements of length, girth, and weight. The dataset consisted of 694 fish from 22 different species common to Laurentian Great Lakes. Even with such a diverse dataset and variety of presentations by the fish, the regressors proved to be robust and achieved competitive mean percent errors in the range of 5.5 to 7.6% for length and girth on an evaluation dataset. Potential applications of this work could increase the efficiency and accuracy of routine survey work by fishery professionals and provide a means for longer‐term automated collection of fish biometric data.

Illinois, Michigan, Ohio↗
USGS2011

Mitigating by-catch of diamondback terrapins in crab pots

Chronic by‐catch of diamondback terrapins ( Malaclemys terrapin ) in blue crab ( Callinectes sapidus ) pots is a concern for terrapin conservation along the United States Atlantic and Gulf of Mexico coasts. Despite the availability of by‐catch reduction devices (BRDs) for crab pots, adoption of BRDs has not been mandated and by‐catch of terrapins continues. We conducted experimental fishing studies in North Carolina's year‐round blue crab fishery from 2000 to 2004 to evaluate the ability of various BRDs to reduce terrapin by‐catch without a concomitant reduction in the catch of blue crabs. In 4,822 crab pot days fished, we recorded only 21 terrapin captures. Estimated capture rates were 0.003 terrapins/pot per day in hard crab experimental fishing and 0.008 terrapins/pot per day in peeler experimental fishing. All terrapin captures occurred from April to mid‐May within 321.4 m of the shoreline. Longer soak times produced more dead terrapins, with 4 live and 4 dead during hard crab experimental fishing and 11 live and 2 dead during peeler experimental fishing. The 4.0‐cm BRDs in fall and 4.5‐cm and 5.0‐cm BRDs in spring reduced the catch of legal‐sized male hard crabs by 26.6%, 21.2%, and 5.7%, respectively. Only the 5.0‐cm BRDs did not significantly affect the catch of legal‐sized hard male crabs. However, BRDs had no measurable effect on catch of target crabs in the peeler crab fishery. Our results identify 3 complementary and economically feasible tools for blue crab fishery managers to exclude terrapins from commercially fished crab pots in North Carolina: 1) gear modifications (e.g., BRDs); 2) distance‐to‐shore restrictions; and 3) time‐of‐year regulations. These measures combined could provide a reduction in terrapin by‐catch of up to 95% without a significant reduction in target crab catch.

North Carolina↗
USGS2022

Food web perspectives and methods for riverine fish conservation

Food web analyses offer useful insights into understanding how species interactions, trophic relationships, and energy flow underpin important demographic parameters of fish populations such as survival, growth, and reproduction. However, the vast amount of food web literature and the diversity of approaches can be a deterrent to fisheries practitioners engaged in on-the-ground research, monitoring, or restoration. Incorporation of food web perspectives into contemporary fisheries management and conservation is especially rare in riverine systems, where approaches often focus more on the influence of physical habitat and water temperature on fish populations. In this review, we first discuss the importance of food webs in the context of several common fisheries management issues, including assessing carrying capacity, evaluating the effects of habitat change, examining species introductions or extinctions, considering bioaccumulation of toxins, and predicting the effects of climate change and other anthropogenic stressors on riverine fishes. We then examine several relevant perspectives: basic food web description, metabolic models, trophic basis of production, mass-abundance network approaches, ecological stoichiometry, and mathematical modeling. Finally, we highlight several existing and emerging methodologies including diet and prey surveys, eDNA, stable isotopes, fatty acids, and community and network analysis. Although our emphasis and most examples are focused on salmonids in riverine environments, the concepts are easily generalizable to other freshwater fish taxa and ecosystems.

Wiley Interdisciplinary Reviews (WIREs): Water↗
USGS1988

Cooperative federal-state liming research on surface waters impacted by acidic deposition

In the eastern and north-central United States, lakes and streams with low acid neutralizing capacity are at risk from acidity. Resource management agencies are interested in developing mitigation strategies that protect or restore fisheries in these waters. Addition of limestone (calcium carbonate) to improve water quality and prevent episodic depressions of pH during precipitation events and spring runoff is one mitigation technique being used. The ecological changes that accompany such treatment of streams and lakes are being investigated in a cooperative program between the U.S. Fish and Wildlife Service and individual states. Streams in Massachusetts, West Virginia and Tennessee, and a lake in Minnesota are included in this 5-yr research program. Intensive monitoring during pre- and post-liming tracks a suite of physical, chemical and biological parameters that influence the re-establishment or maintenance of healthy fisheries. Supporting studies on liming being conducted at Adirondack lakes in New York focus on fisheries management. A model on the influence of liming on light attenuation and thermal stratification is also being developed. Management guidelines are to be generated from the program results.

Massachusetts, Minnesota, Tennessee, West Virginia↗
USGS1999

Effects of recent volcanic eruptions on aquatic habitat in the Drift River, Alaska, USA: Implications at other Cook Inlet region volcanoes

Numerous drainages supporting productive salmon habitat are surrounded by active volcanoes on the west side of Cook Inlet in south-central Alaska. Eruptions have caused massive quantities of flowing water and sediment to enter the river channels emanating from glaciers and snowfields on these volcanoes. Extensive damage to riparian and aquatic habitat has commonly resulted, and benthic macroinvertebrate and salmonid communities can be affected. Because of the economic importance of Alaska's fisheries, detrimental effects on salmonid habitat can have significant economic implications. The Drift River drains glaciers on the northern and eastern flanks of Redoubt Volcano: During and following eruptions in 1989-1990, severe physical disturbances to the habitat features of the river adversely affected the fishery. Frequent eruptions at other Cook Inlet region volcanoes exemplify the potential effects of volcanic activity on Alaska's important commercial, sport, and subsistence fisheries. Few studies have documented the recovery of aquatic habitat following volcanic eruptions. The eruptions of Redoubt Volcano in 1989-1990 offered an opportunity to examine the recovery of the macroinvertebrate community. Macroinvertebrate community composition and structure in the Drift River were similar in both undisturbed and recently disturbed sites. Additionally, macroinvertebrate samples from sites in nearby undisturbed streams were highly similar to those from some Drift River sites. This similarity and the agreement between the Drift River macroinvertebrate community composition and that predicted by a qualitative model of typical macroinvertebrate communities in glacier-fed rivers indicate that the Drift River macroinvertebrate community is recovering five years after the disturbances associated with the most recent eruptions of Redoubt Volcano.

Environmental Management↗
USGS2017

Evaluating stocking efficacy in an ecosystem undergoing oligotrophication

Oligotrophication has negatively affected fisheries production in many freshwater ecosystems and could conceivably reduce the efficacy of stockings used to enhance fisheries. In Lake Michigan, offshore oligotrophication has occurred since the 1970s, owing to reductions in total phosphorus (TP) inputs and nearshore sequestration of TP by nonindigenous dreissenid mussels. We evaluated simultaneous effects of stock enhancement and oligotrophication on salmonine species (Chinook salmon Oncorhynchus tshawytscha , lake trout Salvelinus namaycush , and steelhead O. mykiss ) that support valuable recreational fisheries. We employed a novel application of an Ecopath with Ecosim model by conducting a full factorial simulation experiment. Our design included multiple levels of salmonine stocking, consumption by invasive quagga mussels ( Dreissena bugensis ), and TP that were informed by manager interests. Under all levels of TP and quagga mussel consumption, our results showed that stock enhancement could still increase salmonine biomass, but positive responses were stronger for lake trout and steelhead than Chinook salmon. Simulations showed that quagga mussel consumption has deleterious effects on pelagic-oriented prey fishes and Chinook salmon, which feed almost exclusively on the pelagic-oriented alewife ( Alosa pseudoharengus ). In summary, results from our simulation experiment suggested that lake trout and steelhead are better suited to the current ecosystem than Chinook salmon, and therefore, stock enhancement provides the highest gains for these two species. Furthermore, simulated biomass of all recreational salmonine species increased with increasing TP, indicating the need for managers to consider how potential future oligotrophication will limit the carrying capacity of salmonine biomass in Lake Michigan

Lake Michigan↗
USGS2010

The areal extent of brown shrimp habitat suitability in Mobile Bay, Alabama, USA: Targeting vegetated habitat restoration

The availability of wetlands and shallow water habitats significantly influences Gulf of Mexico (GOM) penaeid shrimp fishery productivity. However, the GOM region has the highest rate of wetland loss in the USA. Protection and management of these vital GOM habitats are critical to sustainable shrimp fisheries. Brown shrimp (Farfantepenaeus aztecus) are a major component of GOM fisheries. We present an approach for estimating the areal extent of suitable habitat for post-larval and juvenile brown shrimp in Mobile Bay, Alabama, using an existing habitat suitability index model for the northern GOM calculated from probabilistic survey of water quality and sediment data, land cover data, and submerged aquatic vegetation coverages. This estuarine scale approach is intended to support targeted protection and restoration of these habitats. These analyses indicate that approximately 60% of the area of Mobile Bay is categorized as suitable to near optimal for post-larval and juvenile shrimp and 38% of the area is marginally to minimally suitable. We identify potential units within Mobile Bay for targeted restoration to improve habitat suitability. ?? 2010 Springer Science+Business Media B.V.

Environmental Monitoring and Assessment↗
USGS2016

A moving target—incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations

Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions.

Environmental Monitoring and Assessment↗
USGS2019

Effectiveness of lake trout (Salvelinus namaycush) suppression in Lake Pend Oreille, Idaho: 2006–2016

The nonnative lake trout ( Salvelinus namaycush Walbaum, 1792) population in Lake Pend Oreille, Idaho increased exponentially during 1999–2006. This led to an unsustainable level of predation mortality on kokanee ( Oncorhynchus nerka Walbaum, 1792), increased the conservation threat to native bull trout ( Salvelinus confluentus Suckley, 1859), and jeopardized the popular recreational fishery for kokanee and rainbow trout ( Oncorhynchus mykiss Walbaum, 1792). In response, lake trout were suppressed since 2006 using incentivized angling, gill netting, and trap netting. From 2006 through 2016, 193,982 lake trout were removed (50% by gill netting; 44% by angling; 6% by trap netting). During this period, age-8 + (adult) lake trout abundance declined by 64%, age-3 (recruit) abundance declined by 56%, and mean total annual mortality ( A ) was 31.1%. Lake trout did not show evidence of a density-dependent response. Kokanee did not collapse and rebounded to abundances not observed since before lake trout expansion. Bull trout abundance declined during suppression, but the population was sustained. Lake trout suppression allowed a harvest fishery for kokanee and trophy fishery for rainbow trout to be restored. We conclude that suppression can be an effective management action for mitigating effects of nonnative lake trout in a large, deep lake.

Hydrobiologia↗
USGS2016

Fishing for ecosystem services

Ecosystems are commonly exploited and manipulated to maximize certain human benefits. Such changes can degrade systems, leading to cascading negative effects that may be initially undetected, yet ultimately result in a reduction, or complete loss, of certain valuable ecosystem services. Ecosystem-based management is intended to maintain ecosystem quality and minimize the risk of irreversible change to natural assemblages of species and to ecosystem processes while obtaining and maintaining long-term socioeconomic benefits. We discuss policy decisions in fishery management related to commonly manipulated environments with a focus on influences to ecosystem services. By focusing on broader scales, managing for ecosystem services, and taking a more proactive approach, we expect sustainable, quality fisheries that are resilient to future disturbances. To that end, we contend that: (1) management always involves tradeoffs; (2) explicit management of fisheries for ecosystem services could facilitate a transition from reactive to proactive management; and (3) adaptive co-management is a process that could enhance management for ecosystem services. We propose adaptive co-management with an ecosystem service framework where actions are implemented within ecosystem boundaries, rather than political boundaries, through strong interjurisdictional relationships.

Journal of Environmental Management↗
USGS2018

Stock structure, dynamics, demographics, and movements of walleyes spawning in four tributaries to Green Bay

To test assumptions related to the current conceptual model for walleye Sander vitreus management in Green Bay, we evaluated whether: 1) spawning aggregations in the Fox, Menominee, Oconto, and Peshtigo rivers represent genetically distinct stocks; 2) population dynamics and demographics vary among walleye spawning at these locations; 3) walleye spawning in these rivers contribute to the fishery in northern Green Bay, and 4) walleye spawning in these rivers exhibit spawning site fidelity or if they stray among rivers. Genetic differentiation among the four tributaries was low and sex-specific total length (TL), mean TL at age 5, and age-class diversity were generally similar among rivers and observed differences were not consistent. Movements of walleye inferred from angler tag returns suggest that walleye spawning (and tagged) in the four tributaries typically remain within southern Green Bay; however, this assertion may be confounded by the distribution of angling effort that provides tag recoveries. Straying rates among rivers ranged from 0 to 23% and were likely sufficient to preclude genetic differentiation among stocks. Collectively, results suggest that walleye spawning in the Fox, Menominee, Oconto, and Peshtigo rivers do not function as separate stocks and do not significantly contribute to the fishery outside of southern Green Bay. The primary assumption of the current conceptual model that remains to be tested is whether the walleye fishery in southern Green Bay is supported primarily by fish spawning in these four rivers, or if there are substantial contributions from fish spawning at other unknown locations.

Wisconsin↗
USGS2021

The path toward consistent achievement of sea lamprey abundance and lake trout marking targets in Lake Ontario, 2000–2019

Lake Ontario boasts a diverse fish community comprised of native and introduced species that support vibrant recreational, commercial and Indigenous fisheries. The effective delivery of a program to assess and control the sea lamprey ( Petromyzon marinus ) is crucial to achievement of Lake Ontario Fish Community Objectives of rehabilitating native fish stocks while protecting and maintaining the abundance of introduced salmonines. During 2000–2019, the Great Lakes Fishery Commission (GLFC) and its control agents, Fisheries and Oceans Canada (DFO) and the U. S. Fish and Wildlife Service (USFWS), delivered a consistent program of sea lamprey assessment and control. Beginning in 2004, rising sea lamprey abundance and marking rates on lake trout ( Salvelinus namaycush ) in Lake Ontario coincided with a decline of large lake trout in gillnet surveys. Efforts were undertaken to identify and control important sources of juvenile sea lampreys, including larvae that survived treatment, inhabited deepwater areas, or colonised previously uninhabited stream reaches and tributaries. A renewed reliance on proven conventional controls, including lampricide treatments and barriers, has resulted in consistent suppression of sea lamprey abundance and lake trout marking to prescribed targets in Lake Ontario during 2014–2019. This achievement is unprecedented in the 49-year history of Sea Lamprey Control Program delivery in Lake Ontario, and is attributable to the collaborative efforts of the GLFC, the control agents, and federal, provincial, state, and Indigenous partners.

Lake Ontario↗
USGS2022

Genome-wide genetic diversity may help identify fine-scale genetic structure among lake whitefish spawning groups in Lake Erie

In Lake Erie, lake whitefish Coregonus clupeaformis supported lucrative fisheries before populations were decimated by overfishing and water quality degradation. In recent years, there has been a renewed interest in lake whitefish and management of the fishery they support. Lake whitefish spawn on several reefs throughout Lake Erie, but the relative recruitment dynamics and contributions of spawning groups to the fishery are not well understood. Modern high-throughput sequencing approaches offer new opportunities to census population diversity and to identify subtle differences among closely related populations. We used high-throughput sequencing data to evaluate the genetic structure and diversity of lake whitefish collected opportunistically across broad spatial scales in Lake Erie. Using RAD-capture (Rapture), we sequenced and genotyped individuals (N = 88) from the west, central, and east basin of Lake Erie at 120,268 single nucleotide polymorphisms (SNPs). Lake whitefish from Niagara and Crib Reefs (west basin) diverged from the three collections. Interestingly, these were the only lake whitefish collected during the act of spawning (late November), and all other fish were collected pre-spawn (August-early November). These results suggest that some lake whitefish spawning reefs may be reproductively isolated, though definition of these groups into stocks will require more intentional sampling during the act of spawning.

Michigan, New York, Ohio, Ontario, Pennsylvania↗
USGS2023

Habitat selection of a migratory freshwater fish in response to seasonal hypoxia as revealed by acoustic telemetry

Adaptive efforts to achieve water quality objectives by modifying nutrient loading can have attendant impacts on fish habitats and fisheries. Thus, coordinating fishery and water quality management depends on knowledge of fish behavioral responses to habitat change. This study combined acoustic telemetry of fish with water quality modeling to understand how water quality management might impact fishery management. We examined habitat use of a native demersal fish, lake whitefish Coregonus clupeaformis , in Lake Erie. We focused on the summer stratified period when habitat was expected to be most limiting and used a forecast model to predict temperature and oxygen in the hypolimnion when fish were detected. As hypothesized, lake whitefish occupied a subset of available conditions with occupied habitats characterized by a cool, normoxic, hypolimnion. On some occasions fish were detected when the hypolimnion was predicted to be hypoxic, suggesting that fish were either displaced vertically or horizontally into marginal habitats or uncertainty in model predictions was high. Still, when hypolimnetic conditions were hypoxic, fish tended to move toward normoxia as expected, but when initial conditions were cold with high dissolved oxygen, fish movements were toward lower oxygen (but still normoxic) conditions. We also observed a high affinity for fish to remain near the southern shore in eastern Ohio, Pennsylvania, and New York. If current nutrient reduction objectives are achieved and the extent and severity of hypoxia is reduced, an expansion of lake whitefish habitat and distribution may have significance to the spatial regulation of fishing effort in Lake Erie.

Michigan, New York, Ohio, Pennsylvania↗
USGS2025

Global recreational consumption of non-native inland fish: Higher economic benefits, but lower nutritional value and climate resilience

Inland recreational fisheries are globally significant leisure pursuits, with well-documented benefits to human health and well-being, but also one of the principal drivers of non-native fish introductions to enhance fishing opportunities, whether for sport or sustenance. In this study, we assess the relative reliance of global inland recreational fisheries on non-native versus native species for harvest. We further examine how this reliance varies by economic and nutritional value as well as the climate vulnerability of the species involved. We demonstrate that, of the 1,325,851 t of inland recreational fishes recreationally harvested for consumption worldwide in 2021, non-native fish were a small proportion (4 %; 53,651 t). On a global scale, non-native fish contributed a net positive 38.2 % economic value to inland recreational harvest. However, they also contributed a net negative −21.9 % nutritional value to inland recreational harvest. Non-native fishes were also more climate vulnerable (i.e., higher average climate vulnerability index values) and thus proportionally increased overall estimates of climate vulnerability with a net positive of 70.9 %. Our results quantitatively demonstrate that non-native species play a more important role in inland consumptive recreational fisheries than their mere harvest volume would suggest. However, many nuances were seen on the continent and country scale, which reflect the complexity of fisher behavior, fish distribution and socio-economic factors. Our findings help unravel the complex effects of non-native species on human activities and underscore the need to evaluate their global impacts holistically.

Science of the Total Environment↗
USGS2003

Mark-recapture population estimates of parasitic sea lampreys ( Petromyzon marinus ) in Lake Huron

Metamorphosed sea lampreys ( Petromyzon marinus ) were collected and marked at two points in their life cycle. Recently metamorphosed juveniles were collected from streams, marked with coded wire tags, and returned to migrate to the Great Lakes. Juveniles already in the lakes and feeding on teleost hosts were obtained from incidental catches by sport or commercial fisheries. Sea lampreys in the Great Lakes spend only 1 feeding year as parasites, and marked animals were recaptured during the spawning runs. For one marked group in each of four parasitic cohorts (feeding years 1991 to 1994) and two marked groups in each of three cohorts (feeding years 1998 to 2000) we recovered from 1.1 to 10.2 percent of marked animals. The number of metamorphosed animals present in autumn before migration to Lake Huron was estimated for five cohorts, with estimates ranging from 639 to 803 thousand. The number of feeding, parasitic animals present in Lake Huron in mid summer was estimated for five cohorts, with estimates ranging from 515,000 to 2,342,000. The larger estimates later in the parasitic year suggested that animals collected and marked from sport or commercial fisheries did not survive at the same rate as unmarked animals. It is recommended that only estimates from recaptures of animals marked in the streams before migration be used until it can be established why survival of juveniles obtained from sport or commercial fisheries might be affected.

Journal of Great Lakes Research↗
USGS2003

Assessing assessment: Can the expected effects of the St. Marys River sea lamprey control strategy be detected?

In 1997 the Great Lakes Fishery Commission approved a 5-year (1998 to 2002) control strategy to reduce sea lamprey ( Petromyzon marinus ) production in the St. Marys River, the primary source of parasitic sea lampreys in northern Lake Huron. An assessment plan was developed to measure the success of the control strategy and decide on subsequent control efforts. The expected effects of the St. Marys River control strategy are described, the assessments in place to measure these effects are outlined, and the ability of these assessments to detect the expected effects are quantified. Several expected changes were predicted to be detectable: abundance of parasitic-phase sea lampreys and annual mortality of lake trout ( Salvelinus namaycush ) by 2001, abundance of spawning-phase sea lampreys by 2002, and relative return rates of lake trout and sea lamprey wounding rates on lake trout by 2005. Designing an effective assessment program to quantify the consequences of fishery management actions is a critical, but often overlooked ingredient of sound fisheries management.

Journal of Great Lakes Research↗
USGS2026

A geographic dataset of rocky reefs habitat areas of particular concern for the United States West Coast

The United States National Marine Fisheries Service determines “essential fish habitat (EFH)” for federally managed species in coordination with regional fishery management councils, considers adverse effects to those habitats, and provides information to further habitat conservation and enhancement. Identifying discrete subsets of EFH as “habitat areas of particular concern (HAPC)” can help focus conservation, management, and research efforts. In 2006, the Pacific Fishery Management Council designated rocky reefs along the United States (U.S.) West Coast as HAPCs for groundfishes because of their ecological significance, sensitivity to human impacts, and relative rarity. To better understand where rocky reefs occur, we (1) located rocky reef areas that were not included in the 2006 rocky reef dataset, and (2) incorporated best available data into a refined geographic dataset that enables visualization. Our update shows that rocky reefs are distributed throughout the U.S. West Coast continental margin, are patchier than previously known, and comprise 8% of the extent of all data inputs. This updated dataset will inform resource management decisions in coastal and marine environments.

California, Oregon, Washington↗