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USGS2009

Ecology of Greater Sage-Grouse in the Bi-State Planning Area Final Report, September 2007

Conservation efforts for greater sage-grouse (Centrocercus urophasianus), hereafter sage-grouse, are underway across the range of this species. Over 70 local working groups have been established and are implementing on-the-ground sage-grouse oriented conservation projects. Early on in this process, the California Department of Fish and Game (CDFG) recognized the need to join in these efforts and received funding from the U.S. Fish and Wildlife Service (USFWS) under the Candidate Species Conservation Program to help develop a species conservation plan for sage-grouse in the Mono County area. This conservation plan covers portions of Alpine, Mono, and Inyo counties in California and Douglas, Esmeralda, Lyon, and Mineral counties in Nevada. A concurrent effort underway through the Nevada Governor's Sage-grouse Conservation Team established Local Area Working Groups across Nevada and eastern California. The Mono County populations of sage-grouse were encompassed by the Bi-State Local Planning Area, which was comprised of six population management units (PMUs). The state agencies from California (CDFG) and Nevada (Nevada Department of Wildlife; NDOW) responsible for the management of sage-grouse agreed to utilize the process that had begun with the Nevada Governor's Team in order to develop local plans for conservation planning and implementation. Resources from the USFWS were applied to several objectives in support of the development of the Bi-State Local Area Sage-grouse Conservation Plan through a grant to the U.S. Geological Survey (USGS). Objectives included: (1) participate in the development of the Bi-State Conservation Plan, (2) compile and synthesize existing sage-grouse data, (3) document seasonal movements of sage-grouse, (4) identify habitats critical to sage-grouse, (5) determine survival rates and identify causal factors of mortality, (6) determine nest success and brood success of sage-grouse, and (7) identify sage-grouse lek sites. Progress reports completed in 2004 and 2005 addressed each of the specific objectives and this final report focuses on the biological information gathered in support of local conservation efforts. Participation in the development of the Bi-State Local Area Conservation Plan was accomplished on multiple scales. Beginning in the fall of 2002, USGS personnel began participating in meetings of local stakeholders involved in the development of a sage-grouse conservation plan for the Bi-State planning area. This included attendance at numerous local PMU group meetings and field trips as well as participating on the technical advisory committee (TAC) for the Bi-State group. Whenever appropriate, ongoing results and findings regarding sage-grouse ecology in the local area were incorporated into these working group meetings. In addition, the USGS partnered with CDFG to help reorganize one of the local PMU groups (South Mono) and edited that portion of the Bi-State plan. The USGS also worked closely with CDFG to draft a description of the state of knowledge for sage-grouse genetic information for inclusion in the Bi-State Conservation Plan. The first edition of the Bi-State Conservation Plan for Greater Sage-Grouse was completed in June 2004 (Bi-State Sage-grouse Conservation Team 2004). This report is organized primarily by PMU to facilitate the incorporation of these research findings into the individual PMU plans that compose the Bi-State plan. Information presented in this report was derived from over 7,000 radio-telemetry locations obtained on 145 individual sage-grouse during a three year period (2003-2005). In addition, we collected detailed vegetation measurements at over 590 habitat sampling plots within the study area including canopy cover, shrubs, forbs, and grasses diversity. Vegetation data collection focused on sage-grouse nests, and brood-use areas. Additionally we collected data at random sites to examine sage-grouse habitat relationships within the study area. The majori

Open-File Report↗
USGS2024

Seasonal activity patterns of northern long-eared bats on the coastal Mid-Atlantic

Conservation of bats declining from white-nose syndrome (WNS) impacts requires an understanding of both temporal and landscape-level habitat relationships. Traditionally, much of the research on bat ecology has focused on behavior of summer maternity colonies within species’ distribution cores, including that of the endangered northern long-eared bat ( Myotis septentrionalis ). To further our knowledge of this species, we evaluated multi-season activity patterns in eastern North Carolina and Virginia, including areas where populations were recently discovered. We used passive acoustic monitoring to assess relative and probable activity of northern long-eared bats from October 2016 to August 2021. Northern long-eared bat relative activity was greatest in areas containing greater proportions of woody wetlands and upland pine-dominated evergreen forests. However, the likelihood of recording northern long-eared bats was associated with smaller proportions of woody wetlands and open water resources. Furthermore, we observed a higher probability of recording northern long-eared bats during non-winter seasons. Probable activity was greatest at temperatures between 10 and 25 C, potentially highlighting an optimal thermoneutral zone for the species regionally. Relative activity of northern long-eared bats on the Coastal Plain of Virginia and North Carolina was primarily driven by cover features, whereas probable activity was driven by a combination of cover features, seasonality, and temperature. Therefore, acoustical surveys for this species may be most effective when targeting woody wetlands adjacent to upland forests, particularly upland pine-dominated evergreen stands, during moderate temperatures of non-winter seasons (1 April–15 November). Moreover, conservation of a diverse mosaic of woody wetlands juxtaposed by upland forests may promote both roosting and overwintering habitat, thereby enhancing overwintering survival, maternity colony establishment, and ultimately, successful reproduction of northern long-eared bats.

North Carolina, Virginia↗
USGS2023

Modeling the spatial distribution of carcasses of eagles killed by wind turbines

Currently, the US Fish and Wildlife Service makes eagle permitting and management decisions nationwide based on a limited understanding of the impacts of wind power generation on eagles, and the factors that influence risk at a given facility. Accurate estimates of eagle mortality at wind power facilities form the basis for comparing the magnitudes of mortality rates in different areas and for measuring the benefits of proposed methods of minimizing the collision-caused impacts to eagle populations. Simple counts of observed eagle carcasses at wind facilities are almost certainly underestimates of the true mortality because fatalities can be removed by scavengers, be missed by searchers, or fall outside searched areas. For the latter, models of relative carcass density as a function of distance from the turbine can be fit to observed carcass locations and used to estimate the proportion of carcasses expected to land within an area of any configuration beneath a turbine. In the USA, however, it has been difficult to estimate these models for large birds such as Bald Eagles ( Haliaeetus leucocephalus ) and Golden Eagles ( Aquila chrysaetos ) due to inadequate numbers of dead eagles found at any single facility. In this case, analysis of a surrogate species might be useful to inform carcass distributions. We chose to model the carcass distribution of White-tailed Eagles ( Haliaeetus albicilla ) in Norway as an informative surrogate for Bald Eagles and Golden Eagles in the USA. Our three best-fitting parametric models were very consistent in estimating that 50% (95% CI: 40–60%) of White-tailed Eagle carcasses land within approximately 42 m of the turbines that had 70-m hubs and approximately 40-m blades. Although our models were fit to data from White-tailed Eagles and not Bald or Golden Eagles, applying these models when calculating mortality impacts of wind developments on both eagle species will likely improve the accuracy of post-construction mortality estimates, particularly at sites where substantial areas may be unsearchable. Accurate post-construction mortality estimates can inform pre-construction fatality prediction models. Resource managers can determine whether their conditions are sufficiently similar to those we modeled to warrant the use of these models for Bald and Golden Eagle carcass distributions.

Journal of Raptor Research↗
USGS2015

Assessment of environmental DNA for detecting presence of imperiled aquatic amphibian species in isolated wetlands

Environmental DNA (eDNA) is an emerging tool that allows low-impact sampling for aquatic species by isolating DNA from water samples and screening for DNA sequences specific to species of interest. However, researchers have not tested this method in naturally acidic wetlands that provide breeding habitat for a number of imperiled species, including the frosted salamander ( Ambystoma cingulatum ), reticulated flatwoods salamanders ( Ambystoma bishopi ), striped newt ( Notophthalmus perstriatus ), and gopher frog ( Lithobates capito ). Our objectives for this study were to develop and optimize eDNA survey protocols and assays to complement and enhance capture-based survey methods for these amphibian species. We collected three or more water samples, dipnetted or trapped larval and adult amphibians, and conducted visual encounter surveys for egg masses for target species at 40 sites on 12 different longleaf pine ( Pinus palustris ) tracts. We used quantitative PCRs to screen eDNA from each site for target species presence. We detected flatwoods salamanders at three sites with eDNA but did not detect them during physical surveys. Based on the sample location we assumed these eDNA detections to indicate the presence of frosted flatwoods salamanders. We did not detect reticulated flatwoods salamanders. We detected striped newts with physical and eDNA surveys at two wetlands. We detected gopher frogs at 12 sites total, three with eDNA alone, two with physical surveys alone, and seven with physical and eDNA surveys. We detected our target species with eDNA at 9 of 11 sites where they were present as indicated from traditional surveys and at six sites where they were not detected with traditional surveys. It was, however, critical to use at least three water samples per site for eDNA. Our results demonstrate eDNA surveys can be a useful complement to traditional survey methods for detecting imperiled pond-breeding amphibians. Environmental DNA may be particularly useful in situations where detection probability using traditional survey methods is low or access by trained personnel is limited.

Alabama, Florida, Georgia, South Carolina↗
USGS2025

Estimated annual abundance of migratory Peale's Peregrine Falcons in coastal Washington, USA

Following the recovery of Peregrine Falcons ( Falco peregrinus ), the US Fish and Wildlife Service began a process to allow “take” (capture) of wild peregrines for falconry in the United States. Recently, that effort involved generating updated estimates of the collective abundance of the three North American peregrine subspecies: F. p. anatum , F. p. tundrius , and F. p. pealei (Peale's Peregrine Falcon). Because of the more limited distribution of F. p. pealei , we conducted an analysis specific to its geographic range. We analyzed data from a long-term banding and resighting program on three beaches on the southern coast of Washington, USA, to estimate the annual abundance of migrating and overwintering F. p. pealei , using the capture histories of 250 Peregrine Falcons, nearly all of which were captured during 1277 vehicle surveys between 1995 and 2024. Because we studied an open population of migratory individuals, we used a zero-inflated Poisson log-normal mark-resight model to estimate annual abundance. For the analyses, we partitioned our survey data into sighting periods, each of which extended from 1 September of one year to 31 May of the next. We anticipated that first-year F. p. pealei would be identified for falconry take, and our annual abundance estimates for first-year birds of this subspecies ranged from a high of 24.8 ± 6.1 (SE) individuals in the 2014–2015 sighting period to a low of 1.9 ± 1.4 individuals in the 2023–2024 sighting period. Peregrine Falcon abundance varied annually and appeared to decline during the last two sighting periods. Our sighting rate of marked peregrines was negatively associated with Bald Eagle ( Haliaeetus leucocephalus ) encounter rate. There was a lesser relationship to human activity, and we suspect the change in sighting rate was a behavioral response by Peregrine Falcons to the threat of kleptoparasitism by Bald Eagles. We currently lack comprehensive information about the natal origin of the individual peregrines in our study area, which prevented us from assessing the degree to which falconry take from the pool of falcons migrating to or through Washington might potentially impact local or regional abundances. Although a better understanding of natal origins is needed, our data add clarity to the migration and overwinter abundance of F. p. pealei on the Washington coast and may inform decisions about the take of this subspecies for falconry.

Washington↗
USGS2004

Trace elements and organic compounds in sediment and fish tissue from the Great Salt Lake basins, Utah, Idaho, and Wyoming, 1998-99

A study to determine the occurrence and distribution of trace elements, organochlorine pesticides, polychlorinated biphenyls (PCBs), and semivolatile organic compounds in sediment and in fish tissue was conducted in the Great Salt Lake Basins study unit of the National Water-Quality Assessment (NAWQA) program during 1998-99. Streambed-sediment and fish-tissue samples were collected concurrently at 11 sites and analyzed for trace-element concentration. An additional four sites were sampled for streambed sediment only and one site for fish tissue only. Organic compounds were analyzed from streambed-sediment and fish-tissue samples at 15 sites concurrently. Bed-sediment cores from lakes, reservoirs, and Farmington Bay collected by the NAWQA program in 1998 and by other researchers in 1982 were used to examine historical trends in trace-element concentration and to determine anthropogenic sources of contaminants. Cores collected in 1982 from Mirror Lake, a high-mountain reference location, showed an enrichment of arsenic, cadmium, copper, lead, tin, and zinc in the surface sediments relative to the deeper sediments, indicating that enrichment likely began after about 1900. This enrichment was attributed to atmospheric deposition during the period of metal-ore mining and smelting. A core from Echo Reservoir, in the Weber River Basin, however, showed a different pattern of trace-element concentration that was attributed to a local source. This site is located downstream from the Park City mining district, which is the most likely historical source of trace elements. Cores collected in 1998 from Farmington Bay show that the concentration of lead began to increase after 1842 and peaked during the mid-1980s and has been in decline since. Recent sediments deposited during 1996-98 indicate a 41- to 62-percent reduction since the peak in the mid-1980s. The concentration of trace elements in streambed sediment was greatest at sites that have been affected by historic mining, including sites on Little Cottonwood Creek in the Jordan River basin, Silver Creek in the Weber River basin, and the Weber River below the confluence with Silver Creek. There was significant correlation of lead concentrations in streambed sediment and fish tissue, but other trace elements did not correlate well. Streambed sediment and fish tissue collected from sites in the Bear River basin, which is predominantly rangeland and agriculture, generally had low concentrations of most elements. Sediment-quality guidelines were used to assess the relative toxicity of streambed-sediment sites to aquatic communities. Sites affected by mining exceeded the Probable Effect Concentration (PEC), the concentration at which it is likely there will be a negative effect on the aquatic community, for arsenic, cadmium, copper, lead, silver, mercury, and zinc. Sites that were not affected by mining did not exceed these criteria. Concentrations of trace elements in samples collected from the Great Salt Lake Basins study unit (GRSL) are high compared to those of samples collected nationally with the NAWQA program. Nine of 15 streambed-sediment samples and 11 of 14 fish-tissue samples had concentrations of at least one trace element greater than the concentration of 90 percent of the samples collected nationally during 1993-2000. Organic compounds that were examined in streambed sediment and fish-tissue samples also were examined in bed-sediment cores. A bed-sediment core from Farmington Bay of Great Salt Lake showed an increase in total polycyclic aromatic hydrocarbon (PAH) concentrations coincident with the increase in population in Salt Lake Valley, which drains into this bay. Analysis of streambed-sediment samples showed that the highest concentrations of PAHs were detected at urban sites, including two sites in the lower Jordan River (the Jordan River flows into Farmington Bay), the Weber River at Ogden Bay, and the Provo River near Provo. Other organic compounds detected in streambed sediment in the lower Jordan River were PCBs, DDT compounds, and chlordane compounds. Organic compounds were detected more frequently in fish tissue than in streambed sediment. Chlordane compounds and PCBs were detected more frequently at urban sites. DDT compounds were detected at 13 of 15 sites including urban and agricultural sites. Concentrations of total DDT in fish tissue exceeded the guideline for protection of fish-eating wildlife at two urban sites. The concentration of organic compounds in the GRSL study unit is low compared with that of samples collected nationally.

Idaho, Utah, Wyoming↗
USGS2023

Selenium hazards in the Salton Sea environment—Summary of current knowledge to inform future wetland management

Quaternary marine and continental shales in the western United States are sources of selenium that can be loaded into the aquatic environment through mining, agricultural, and energy production processes. The mobilization of selenium from shales through agricultural irrigation has been recognized since the 1930s; however, discovery of deformities in birds and other wildlife using agricultural habitats during the 1980s spurred studies to determine the extent and effects of the contamination. Through these early studies, researchers determined that biota in the Salton Sea drainage basin was at risk from legacy selenium contamination in the Colorado River watershed. The Salton Sea and its surrounding managed and unmanaged wetlands provide vital inland habitat and trophic support for diverse assemblages of resident and migratory wildlife, and understanding regional selenium hazards for these trust species is a priority for many Federal and State agencies. The modern Salton Sea is a shallow, landlocked saline lake in Riverside and Imperial Counties (not shown) of California that is sustained by irrigation return and perennial river inflow. Changes in water transfer agreements under the 2003 Quantification Settlement Agreement (QSA) have resulted in reduced irrigation flow, declining lake levels, and the evolution of unmanaged wetlands in areas where drains and rivers no longer reach the Salton Sea. These wetlands provide additional habitat for some species of concern, but their potential to increase selenium hazards for trust species is largely unknown. From the 1980s to 2020, efforts to document selenium contamination and effects throughout the region have resulted in a considerable amount of selenium data from the Salton Sea and its surrounding drainage basin; however, no long-term (greater than 20 years), consistent sampling program has been established, and all data have been collected by different entities using a variety of protocols and analytical techniques. This lack of coordination has been previously documented in regional management plans and has led to difficulty in reliably assessing selenium hazards in the Salton Sea environment. This report provides a summary of the available disparate selenium information collected from water, sediment, and biota in the Salton Sea region since the 1980s and to identify data gaps that need to be filled to understand the potential effects of selenium on species of concern, including federally endangered desert pupfish ( Cyprinodon macularius ) and Yuma Ridgway’s Rail ( Rallus obsoletus yumanensis; formerly Yuma Clapper Rail, Rallus longirostris yumanensis ). Available data from the Salton Sea drainage basin show that water from the Colorado River has the lowest selenium concentration of all surface water sources. All other surface water flowing into the Salton Sea has elevated selenium concentrations due to evaporation and evapotranspiration that occurs in agricultural fields and associated water delivery infrastructure or leaching of selenium from irrigated farmland soils. The Salton Sea has lower selenium concentrations because of various biogeochemical processes that recycle selenium into the sediment or volatilize it to the atmosphere; however, these mechanisms are not well defined, and it is not clear if selenium cycling will change in response to possible changes in the oxidation state of the Salton Sea bottom waters as water levels decline. Agricultural drains have the highest average selenium concentrations, but few drains have been sampled since changes in irrigation practices have occurred (due to the 2003 QSA). Groundwater selenium concentrations are variable; some wells south of the Salton Sea have selenium concentrations as high as 300 micrograms per liter (µg/L), whereas selenium concentrations are below detection in other wells. Groundwater and surface-water geothermal discharge zones around the margins of the Salton Sea and in unmanaged wetlands have not been studied in detail, and published selenium measurements are not available for these surface features. Selenium concentrations in the sediment of the Salton Sea drainage basin are highest in wetland particulate organic matter and the Salton Sea lakebed, indicating that removal of selenium from the water to the sediment has been a primary mechanism for keeping selenium concentrations low in the water column. Sediment selenium concentrations in wetlands are lower than in the Salton Sea but higher than inflowing drains and rivers, indicating the lentic wetland sites also may be important sinks for selenium because of biogeochemical processes. Sediment selenium data have not been collected in agricultural drains since changes in irrigation practices occurred (due to the 2003 QSA), and it is unknown if selenium sequestration from the water column has changed in these systems. We divided biological data into broad taxonomic categories, including primary producers, invertebrates, herpetofauna, mammals, fishes, and birds to facilitate evaluation of selenium concentrations and spatiotemporal trends observed in the Salton Sea. Overall, selenium concentrations were substantially greater in algae samples compared to all vascular plant samples combined. Median selenium concentrations in several invertebrate taxa (Chironomidae, Formicidae, Corixidae, Corbiculidae and Nereididae, and Decapoda) exceeded the maximum suggested dietary threshold of 3.0–4.0 micrograms per gram (µg/g) dry weight (dw) for predators consuming invertebrates in aquatic food webs. The greatest number of samples were collected from fish, and selenium distributions among species and locations showed that the range for most samples was lower than the U.S. Environmental Protection Agency selenium criterion for aquatic life (8.5 µg/g dw whole body, 11.3 µg/g dw fillets). The median selenium concentrations for whole body fish were below the selenium criterion in most locations, except for bairdiella ( Bairdiella icistia ) from the Salton Sea and irrigation drains, a few individual tilapia spp. (family Cichlidae, including genera Tilapia, Oreochromis , and their hybrids) from the river and river outlets, and several western mosquitofish ( Gambusia affinis ) and sailfin molly ( Poecilia latipinna ) from irrigation drain outlets. For avian samples combined among years and locations, median selenium concentrations in livers from all families except waders and Ibis (family Threskiornithidae) were higher than levels expected to cause selenium toxicosis (10–20 µg/g dw), and all median egg concentrations were above or near 6.0 μg/g dw, which is a conservative threshold value for reproductive impairment. Most knowledge gaps we identified for water, sediment, and biota were interrelated, and the use of integrated approaches to address knowledge gaps can provide greater insight into the drivers behind selenium hazards. Integrated water, sediment, and biota studies could help identify cost-effective management solutions that serve multiple purposes. A comprehensive analysis of the hydrology, biogeochemistry, and food-web processes in wetlands and other habitats can inform predictive models to identify drivers of selenium bioavailability, uptake from the environment and subsequent trophic transfer, ultimately forming the basis for experimental habitat management manipulations to minimize selenium hazards to wildlife. Furthermore, a comprehensive, long-term sampling and analytical laboratory plan would enable comparison of data among different entities that are sampling at the Salton Sea. Such efforts are well suited to help fill knowledge gaps that preclude understanding of selenium hazards and future management options for biota using Salton Sea habitats, including newly formed wetlands throughout the region. All data compiled for this report are available in two U.S. Geological Survey data releases: Groover and others (2022) for water and sediment samples and De La Cruz and others (2022) for biological samples. The data releases include all publicly available data for selenium concentrations in water, sediment, and biological samples collected in and around the Salton Sea, including the Coachella and Imperial Valleys. The data releases also include previously unpublished data.

California↗
USGS2012

Coordinated bird monitoring: Technical recommendations for military lands

The Department of Defense (DoD) is subject to several rules and regulations establishing responsibilities for monitoring migratory birds. The Sikes Act requires all military installations with significant natural resources to prepare and implement Integrated Natural Resources Management Plans (INRMPs). These plans guide the conservation and long-term management of natural resources on military lands in a manner that is compatible with and sustains the military mission. An INRMP also supports compliance with all legal requirements and guides the military in fulfilling its obligation to be a good steward of public land.The management and conservation of migratory birds is addressed in installation INRMPs. The National Environmental Policy Act (NEPA) requires federal agencies to evaluate and disclose the potential environmental impacts of their proposed actions. More recently, DoD signed an MOU (http://www.dodpif.org/downloads/EO13186_MOU-DoD.pdf) for migratory birds, under Executive Order 13186, with the US Fish and Wildlife Service (USFWS) in July 2006 and a Migratory Bird Rule (http://www.dodpif.org/downloads/MigBirdFINALRule_FRFeb2007.pdf) was passed by Congress in February 2007. The Migratory Bird Rule addresses the potential impacts of military readiness activities on populations of migratory birds and establishes a process to implement conservation measures if and when a military readiness activity is expected to have a significant adverse impact on a population of migratory bird species (as determined through the NEPA process). The MOU states that for nonmilitary readiness activities, prior to initiating any activity likely to affect populations of migratory birds DoD shall (1) identify the migratory bird species likely to occur in the area of the proposed action and determine if any species of concern could be affected by the activity, and (2) assess and document, using NEPA when applicable, the effect of the proposed action on species of concern. By following these procedures, DoD will minimize the possibility for a proposed action to unintentionally take migratory birds at a level that would violate any of the migratory bird treaties and potentially impact mission activities. In addition, implementing conservation and monitoring programs for migratory birds supports the ecosystem integrity necessary to sustain DoD's natural resources for the military mission.Non-compliance with the procedural requirements of the MBTA could result in a private party lawsuit under the Administrative Procedures Act (APA). A lawsuit filed under APA involving a Navy bombing range is the basis for a court ruling that unintentional take of migratory birds applies to federal actions. Ensuring the necessary data is available to adequately assess impacts of a proposed action will help avoid lawsuits or help ensure such lawsuits have no grounds. The data gathered in a bird monitoring program will provide the best scientific data available to assess the expected impacts of a proposed action on migratory bird species through the NEPA process. This report presents recommendations developed by the U.S. Geological Survey (USGS) for the Department of Defense (DoD) on establishing a "Coordinated Bird Monitoring (CBM) Plan." The CBM Plan is intended to ensure that DoD meets its conservation and regulatory responsibilities for monitoring birds (Chapter 1). The report relies heavily on recommendations in the report, "Opportunities for improving avian monitoring" (http://www.nabci-us.org/aboutnabci/monitoringreportfinal0307.pdf), by the U.S. North American Bird Conservation Initiative (U.S. NABCI Monitoring Subcommittee, 2007) and on a review of 358 current DoD bird monitoring programs carried out as part of this project (Chapter 2). This report contains 12 recommendations which, if followed, would result in a comprehensive, efficient, and useful approach to bird monitoring. The recommendations are based on the entire report but are presented together at the end of Chapter 1. DoD has agreed to consider implementing these recommendations; however, final decisions will be based upon such factors as the availability of resources and military mission considerations. These recommendations from USGS can be summarized into 6 major themes: A major report on monitoring was released in 2007 by the U.S. North American Bird Conservation Initiative (http://www.nabci-us.org/main2.html). DoD can be consistent with this report by establishing policy that monitoring will be explicitly acknowledged as an integral element of bird management and conservation (Recommendation 1). The design of monitoring and assessment programs for birds should include the following steps: Preparation of a document describing the program's goals, objectives, and methods similar to a format we provide (Recommendation 2, Chapter 4). Selection of field methods using an "expert system" developed in this project (Recommendation 3, Chapter 5) or another well-documented system. Preparation and storage of metadata describing the monitoring program in the Natural Resources Monitoring Partnership (NRMP), and other appropriate databases Recommendation 4, Chapter 6). Entry of the survey data using eBird (http://ebird.org/content/dod) or the Coordinated Bird Monitoring Database (CBMD) and long-term storage of the data in the CBMD and the Avian Knowledge Network (AKN; Recommendation 5, Chapter 6; http://www.avianknowledge.net/). Submission of major results from the monitoring program for publication in a peer reviewed journal (Recommendation 6). The DoD Legacy Resource Management Program (Legacy; https://www.dodlegacy.org), Environmental Security Technology Certification Program (ESTCP; http://www.serdp.org/), and Strategic Environmental Research and Development Program (SERDP; http://www.serdp.org/) should be encouraged to continue their significant contributions to the foundations of bird monitoring (Recommendation 7, Chapters 1 and 3). Appropriate monitoring should be conducted to identify species of concern on installations. A year-round, one-time survey of birds on installations with habitat for migratory birds would provide the most information to assist compliance with the MOU, the Final Rule, and the NEPA analyses of proposed actions. However, less intensive survey efforts can still be conducted to yield useful information. We describe how various levels of survey effort might be organized and conducted. In addition, continuing surveys, as feasible, would further assist in documenting effects of military readiness and non-readiness activities on species of concern (SOC) (Recommendation 8, Chapter 7). Participation in well-designed, large-scale surveys [(e.g., North American Breeding Bird Survey (BBS; http://www.pwrc.usgs.gov/bbs/), Monitoring Avian Productivity and Survivorship (MAPS; http://www.birdpop.org/maps.htm)] on land that DoD manages or on lands where the results will be of high interest to DoD, will provide DoD and other NABCI members with information important to bird conservation (Recommendation 9, Chapter 8). Review and implementation of the CBM Plan should involve both higher level management and installation-level natural resources managers (Recommendation 11), be implemented through cooperative partnerships (Recommendation 12), and be followed on U.S territory lands and Army Corps of Engineers projects (Recommendation 10).Additional recommendations that pertain to implementing the DoD CBM Plan are discussed in Chapter 9.

Open-File Report↗
USGS2015

U.S. Geological Survey science for the Wyoming Landscape Conservation Initiative—2014 annual report

This is the seventh report produced by the U.S. Geological Survey (USGS) for the Wyoming Landscape Conservation Initiative (WLCI) to detail annual activities conducted by the USGS for addressing specific management needs identified by WLCI partners. In FY2014, there were 26 projects, including a new one that was completed, two others that were also completed, and several that entered new phases or directions. The 26 projects fall into several categories: (1) synthesizing and analyzing existing data to identify current conditions on the landscape and using the data to develop models for projecting past and future landscape conditions; (2) monitoring indicators of ecosystem conditions and the effectiveness of on-the-ground habitat projects; (3) conducting research to elucidate the mechanisms underlying wildlife and habitat responses to changing land uses; (4) managing and making accessible the large number of databases, maps, and other products being developed; and (5) coordinating efforts among WLCI partners, helping them use USGS-developed decision-support tools, and integrating WLCI outcomes with future habitat enhancement and research projects. The new (completed) project was the development and publication of a public outreach piece for visitors of Fossil Butte National Monument. The final product was a USGS Fact Sheet that capitalized on previously collected elk-monitoring data to interpret the ecology of the Monument’s elk population and the importance of the Monument’s habitats to this highly visible wildlife species. One of the completed projects entailed developing and evaluating a synthetic approach to high-resolution satellite imagery for use in effectiveness monitoring, which culminated in a journal article. The other completed project was a coalescing of two similar tasks under data and information management that pertain to Web application development and the development of outreach and graphic products into a single integrated project that focuses on developing and maintaining/upgrading Web applications and other tools for visualizing, mapping, and using geospatial data. Major accomplishments for FY2014 included several publications, including Part B of an energy resources map that (with Part A) depicts coal, wind, oil, gas, oil shale, uranium, and solar energy production in the WLCI region. Two published works associated with sage-grouse included a Wildlife Monograph on prioritizing species’ habitats across large landscapes, multiple seasons, and novel areas (using sage-grouse in Wyoming as an example), and a USGS Data Series report that includes both the data used in the habitat-prioritization models and the habitat prioritization models developed for sage-grouse. Our Science Team also published a framework for conducting large, collaborative projects that rely on geospatial data, and a paper that describes the efficacy of fusing satellite data collected at various resolutions for measuring and monitoring vegetation changes. These products are all invaluable tools for maximizing the efficiency and effectiveness of managing species of concern, conducting future landscape-scale assessments, and monitoring status and trends of landscape conditions. Other highlights of FY2014 included a renewed effort to gather and analyze wildlife and habitat status and trend data for the WLCI Interagency Monitoring Database (IAMD) to assess long-term trends and cumulative effects associated with land-use and climate changes. Water-monitoring efforts included drilling four new groundwater-monitoring wells in the Green and New Fork River basins near the proposed Normally Pressured Lance Formation energy development, and continued data collection at established water-monitoring sites. Three additional wells were sampled as part of the Wyoming Groundwater Monitoring Network, bringing the total to 19 Network wells sampled in the WLCI region since 2010. Combined, these water-monitoring efforts can help to identify potential changes in water quality or levels that may result from land-use changes. Major terrestrial monitoring accomplishments included processing satellite imagery from 1985−2010 to develop a historical perspective of long-term vegetation changes, which can serve as a basis for monitoring current and future trends in sagebrush steppe. Such data are crucial tools for agencies tasked with sage-grouse management and conservation. The USGS WLCI Science Team also continued monitoring and testing methods for evaluating WLCI habitat treatments designed to promote aspen regeneration and enhance sage-grouse habitat, and to assess how those treatments influence invasive species distributions and ungulate herbivory. Highlights included analyzing field data collected to elucidate the relationships between sage-grouse habitat use and the proximity of energy infrastructure, and using new instruments to measure productivity responses of aspen woodlands to various factors. Numerous FY2014 accomplishments specifically addressed agency needs to manage and conserve Wyoming’s wildlife species of concern. A pygmy rabbit habitat model and Wyoming distribution map were completed to identify factors associated with rabbit habitat occupancy. Previous work on sage-grouse population dynamics was expanded to better understand the factors that drive long-term viability of sage-grouse populations and to develop a tool that helps to identify key factors limiting sage-grouse persistence in Wyoming. Field work and data analyses continued for elucidating the relationships between sagebrush songbird abundance and productivity, the intensity of energy development, and community dynamics of nest predators. For the mule deer study, mixed mountain shrublands important to migrating and wintering mule deer were mapped and delivered to WLCI partners. Additionally, the relationships between energy development and crucial winter habitat for mule deer were evaluated, and a new phase of work was implemented to better understand relationships between plant phenology and mule deer migration movements. Finally, initial analyses of data collected to evaluate fish-community composition in relation to habitat quality indicate that water quality, as measured by concentrations of hydrocarbons, water temperature, and others parameters, has been diminished in subwatersheds with higher levels of energy development. Overall, the outcomes and products of these wildlife studies contribute significantly to the information and tools needed for addressing effects of land-use changes on Wyoming’s species of concern. Finally, capabilities of the WLCI Web site and the USGS ScienceBase infrastructure were maintained and upgraded to help ensure access to and efficient use of all the WLCI data, products, assessment tools, and outreach materials that have been developed. Of particular note is the completion of three Web applications developed for mapping (1) the 1900−2008 progression of oil and gas development;(2) the predicted distributions of Wyoming’s Species of Greatest Conservation Need; and (3) the locations of coal and wind energy production, sage-grouse distribution and core management areas, and alternative routes for transmission lines within the WLCI region. Collectively, these applications tools provide WLCI planners and managers with powerful tools for better understanding the distributions of wildlife species and potential alternatives for energy development.

Wyoming↗
USGS2008

Survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam, Northern California, 2007

This report describes a study of survival and migration behavior of juvenile coho salmon in the Klamath River relative to discharge at Iron Gate Dam in 2006. This was the second year of a multi-year study with the goal of determining the effects of discharge at Iron Gate Dam on survival of juvenile coho salmon downstream. The study was a collaborative effort among U.S. Geological Survey (USGS), U.S. Fish and Wildlife Service (USFWS), and the Yurok and Karuk Tribal Fisheries Departments. The goals of the study included: 1) estimating the survival of wild and hatchery juvenile coho salmon in the Klamath River downstream from Iron Gate Dam, 2) determining the effects of discharge and other covariates on their survival and migration, and 3) determining if fish from Iron Gate Hatchery could be used as surrogates for the limited source of wild fish. The major findings of the study in 2006 include: River discharges during the 2006 study period (4 April through 21 July 2006) were among the greatest on record. Average daily discharge at Iron Gate Dam was 3,956 cubic feet per second (cfs) and ranged from 997 to 10,300 cfs. Discharge at Iron Gate Dam was positively correlated with discharges of tributaries downstream due to the above average water year and frequent occurrence of spill at Iron Gate Dam. Average daily discharge near the estuary was 25,789 cfs and ranged from 4,740 to 50,600 cfs. This study was based on hatchery fish taken directly from a tank at Iron Gate Hatchery and wild fish captured in a rotary trap on the Shasta River. Releases of both groups began on 4 April when the catch of wild fish in California Department of Fish and Game‟s Shasta River rotary trap increased, but trap catches varied throughout the study period, resulting in differences in release dates of hatchery and wild fish. A total of 211 hatchery fish were released from 4 April through 26 May. Wild and hatchery fish released on a regular schedule between 25 April and 16 May 2006 were used in comparisons of the survival and migration of hatchery (N = 120) and wild (N = 162) fish. Additional analyses were performed using hatchery fish from all dates. The data and models did not support clear differences between survivals of hatchery and wild fish released on common dates, so estimates of reach survivals were made after pooling these data. Estimates of survival were lowest in the Iron Gate Dam to Scott River reach (0.813) and greatest in the Salmon River to Trinity River reach (1.000). The overall survival from river kilometer 309 (Iron Gate Hatchery) to river kilometer 33 was 0.653 (95% CI 0.578 to 0.729). Estimates of survival based on all hatchery fish releases were similar to those from release dates common to hatchery and wild fish and are similar to those in other river systems over similar distances. The migrations of hatchery and wild fish were different in the uppermost sections of the study area and were similar thereafter. A lag between release and migration, primarily upstream from the Scott River (river kilometer 234), was present in hatchery fish to a greater extent than in wild fish, resulting in differences in migration rates. Fish from both origins spent more time between release and the Scott River than in individual reaches downstream, and this was the only reach in which travel times of fish increased as discharge decreased. The travel times of hatchery and wild fish between sites were statistically similar downstream from Indian Creek (river kilometer 178). There were differences and similarities in the analyses of the effects of covariates on survivals of hatchery and wild fish. The models of covariate effects based on hatchery and wild fish released on common dates indicated effects on wild fish survival that were not supported in data from hatchery fish. However, when the entire suite of hatchery fish releases were used the results of the analyses were similar to those based on wild fish. In both instances the effects of temperature and release date were primarily in the first reach, the reach fish of both origins spent most of their time within. The signs of the effects of these covariates differed among the fish origins (negative for wild and positive for hatchery fish), presumably due to differences in their migrations in the first reach. The effects of dam discharge on survivals of hatchery and wild fish were generally similar (positive relation), and the effects on hatchery, and to a lesser extent wild, fish were largely downstream from the Scott River. This is likely due to the prolonged residence of the naïve hatchery fish, and to a lesser extent, migrant wild fish between release and the Scott River. Inasmuch as the differences between hatchery and wild fish we observed were likely those of migrants vs. non-migrants, the use of hatchery fish captured as they are migrating downstream, rather than those directly from hatchery tanks (i.e., naïve), may improve similarities between hatchery and wild fish in future studies. The data and models used in 2006 do not support the use of naïve hatchery fish as surrogates for migrant wild fish in determining the effects of discharge on survival upstream from the Scott River. This conclusion is based on the different effects of covariates in this reach that were likely attributable to the differences in hatchery and wild migration behaviors in this reach. The results of this second year of research provide insight to the migration and survival of hatchery and wild juvenile coho salmon in the Klamath River, but the results are from a single unusual water year. The results may be different during other water year types. The current information supports a positive relation between discharge at Iron Gate Dam and survival of juvenile coho salmon downstream, but additional data should be used to refine this relation. Discharge at the dam was correlated with discharges of Klamath River tributaries during this above average water year. The data and models from the 2006 study provide the first estimates of survival of these fish in the Klamath River and can be used with data from years with other water year types to examine the effects of discharge on survival. This will only be possible over a period of years in which the correlations between discharge and other factors, such as water temperature and date, are diminished. An experimental approach in which discharges are varied at Iron Gate Dam is the most direct method to determine if survivals are affected by discharge, but this may not be feasible given the limited storage capacity of the project.

California↗