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USGS2013

Location-only and use-availability data: analysis methods converge

This Special Feature arose from a session on a topic of the same name that took place during The Wildlife Society meeting in Kona, Hawaii, from 5 to 10 November, 2011. The purpose of that session and this Special Feature is to compare methods for predictive modelling of species geographical distributions and the modelling of habitat (resource) selection by animals. The predictive modelling of species geographical distributions and the modelling of habitat selection based on the environmental conditions at sites where animals are known to occur are essentially the same problem. Presence-only and used-available data both consist of a sample of locations with known presence of a species or an individual. A separate sample of locations from a study area, with unknown presence (pseudo-absence), is also assumed to exist. The probability or relative probability of presence of a species or individual is modelled and estimated across a certain time implicitly defined by the sampling mechanism, for example, by the time period during which museum specimens or radiotelemetry data were collected. A number of modelling methods have appeared in the literature over the last couple of decades. Many of these methods were made feasible by the availability of geographical information systems (GIS), global positioning system (GPS) radiotelemetry and public online data access initiatives (e.g. global biodiversity information facility). The papers in this Special Feature are intended to present the state of the methodological art in their subject area, with particular attention paid to contrasting the advantages and disadvantages of alternative methods of analysis for data.

Journal of Animal Ecology↗

USGS2012

Partly cloudy with a chance of migration: Weather, radars, and aeroecology

Aeroecology is an emerging scientific discipline that integrates atmospheric science, Earth science, geography, ecology, computer science, computational biology, and engineering to further the understanding of biological patterns and processes. The unifying concept underlying this new transdisciplinary field of study is a focus on the planetary boundary layer and lower free atmosphere (i.e., the aerosphere), and the diversity of airborne organisms that inhabit and depend on the aerosphere for their existence. Here, we focus on the role of radars and radar networks in aeroecological studies. Radar systems scanning the atmosphere are primarily used to monitor weather conditions and track the location and movements of aircraft. However, radar echoes regularly contain signals from other sources, such as airborne birds, bats, and arthropods. We briefly discuss how radar observations can be and have been used to study a variety of airborne organisms and examine some of the many potential benefits likely to arise from radar aeroecology for meteorological and biological research over a wide range of spatial and temporal scales. Radar systems are becoming increasingly sophisticated with the advent of innovative signal processing and dual-polarimetric capabilities. These capabilities should be better harnessed to promote both meteorological and aeroecological research and to explore the interface between these two broad disciplines. We strongly encourage close collaboration among meteorologists, radar scientists, biologists, and others toward developing radar products that will contribute to a better understanding of airborne fauna.

Bulletin of the American Meteorological Society↗

USGS2026

A novel method for quantifying streambed penetrability to inform benthic habitat assessment

Objective Penetrability of streambed sediments is important for the ecological functioning of many benthic organisms, yet there is ambiguity in terminology associated with this concept and there is no standardized method of penetrability measurement available to scientists and resource managers. The goal of our study was to better define the terms of compaction and penetrability as they relate to streambed substrate and to advance the measurement techniques for assessing penetrability of bed sediments in gravel-bed streams. Methods We tested the performance of a modified penetrometer method in 12 different substrate configurations in the laboratory and used the data to determine the relationship between penetration depth and substrate characteristics. We then simulated additional sampling effort and used bootstrapping methods to provide guidance on the number of samples required to achieve consistent results. Finally, we tested the device in a field setting to validate our laboratory and simulation results. Results Depth of penetration was negatively related to increasing substrate particle diameter and number of particle size-classes in both laboratory and field tests. Mean depth of penetration and CV stabilized after five samples, but variation remained high in scenarios containing large-grained particles. Conclusions Our results show that the device has application in gravel-bed streams but may require high amounts of sampling effort to capture variation in streams dominated by large substrate. We discuss the uses and limitations of this method for estimating substrate penetrability and provide guidance on interpretation of the estimates that it produces.

Transaction of the American Fisheries Society↗

USGS2017

Reproductive ecology, spawning behavior, and juvenile distribution of Mountain Whitefish in the Madison River, Montana

Mountain Whitefish Prosopium williamsoni were historically common throughout much of the U.S. Intermountain West. However, within the last decade Mountain Whitefish have exhibited population-level declines in some rivers. In the Madison River, Montana, anecdotal evidence indicates Mountain Whitefish abundance has declined and the population is skewed toward larger individuals, which is typically symptomatic of recruitment problems. Describing reproductive development, spawning behavior, and juvenile distribution will form a foundation for investigating mechanisms influencing recruitment. We collected otoliths and gonadal samples from fish of all size-classes to characterize fecundity, age at maturity, and spawning periodicity. We implanted radio tags in mature Mountain Whitefish and relocated tagged fish in autumn 2012–2014. Timing of spawning was determined from spawning status of captured females and from density of eggs collected on egg mats. In spring 2014, we seined backwater and channel sites to describe age-0 whitefish distribution. Mountain Whitefish were highly fecund (18,454 eggs/kg body weight) annual spawners, and age at 50% maturity was 2.0 years for males and 2.6 years for females. In 2013 and 2014, spawning occurred between the third week of October and first week of November. During spawning, spawning adults and collected embryos were concentrated in the downstream 26 km of the study site, a reach characterized by a complex, braided channel. This reach had the highest CPUE of age-0 Mountain Whitefish, and the percentage of spawning adults in the 25 km upstream from a sampling site was positively associated with juvenile CPUE. Within this reach, age-0 Mountain Whitefish were associated with silt-laden backwater and eddy habitats. Future investigations on mechanisms influencing recruitment should be focused on the embryological phase and age-0 fish.

Montana↗

USGS2002

An index of biological integrity for northern Mid-Atlantic Slope drainages

An index of biological integrity (IBI) was developed for streams in the Hudson, Delaware, and Susquehanna River drainages in the northeastern United States based on fish assemblage data from the Mohawk River drainage of New York. The original IBI, developed for streams in the U.S. Midwest, was modified to reflect the assemblage composition and structure present in Mid-Atlantic Slope drainages. We replaced several of the Midwestern IBI metrics and criteria scores because fishes common to the Midwest are absent from or poorly represented in the Northeast and because stream fish assemblages in the Northeast are less rich than those in the Midwest. For all replacement metrics we followed the ecology-based rationale used in the development of each of the metrics of the Midwestern IBI so that the basic theoretical underpinnings of the IBI remained unchanged. The validity of this modified IBI is demonstrated by examining the quality of streams in the Hudson, Delaware, and lower Susquehanna River basins. The relationships between the IBI and other indicators of environmental quality are examined using data on assemblages of fish and benthic macroinvertebrates and on chemical and physical stream characteristics obtained during 1993-2000 by the U.S. Geological Survey's National Water Quality Assessment Program in these three river basins. A principal components analysis (PCA) of chemical and physical variables from 27 sites resulted in an environmental quality gradient as the primary PCA axis (eigenvalue, 0.41 ). Principal components analysis site scores were significantly correlated with such benthic macroinvertebrate metrics as the percentage of Ephemeroptera, Plecoptera, and Trichoptera taxa (Spearman R = -0.66, P < 0.001). Index of biological integrity scores for sites in these three river basins were significantly correlated with this environmental quality gradient (Spearman R = -0.78, P = 0.0001). The northern Mid-Atlantic Slope IBI appears to be sensitive to environmental degradation in all three of the river basins addressed in this study. Adjustment of metric scoring criteria may be warranted, depending on composition of fish species in streams in the study area and on the relative effort used in the collection of fish assemblage data.

Transactions of the American Fisheries Society↗

USGS1994

Guidebook on the geology, history, and surface-water contamination and remediation in the area from Denver to Idaho Springs, Colorado

This guidebook for a 1-day drive in the Front Range west of Denver, Colorado, includes commentary on mountain landscapes, notes on the colorful mining history of the area, and discussions on the geology and some miningrelated environmental hazards in the Idaho Springs area. It was originally prepared as U.S. Geological Survey OpenFile Report 91-426 for a field trip sponsored by Division A-5 (Environmental Quality) of the Soil Science Society of America on October 10, 1991. That original report has been revised and expanded to make this circular more useful as a self-contained guide. A pamphlet entitled "Mountains and Plains: Denver's Geologic Setting" is a complimentary general interest publication that is available free of charge from map sales in building 810 on the Denver Federal Center, Lakewood, Colorado. The pamphlet contains useful background information on the geologic setting of Denver and nearby portions of the Front Range. A few precautions and suggestions are offered to make the trip safe and enjoyable. Idaho Springs is about 7,500 feet above sea level and the lower oxygen content of the air (about 50 percent that of sea level) may adversely affect people with heart or breathing problems. The wetlands are "wet" so use suitable footwear. The daily weather patterns are changeable. Mornings in Denver may be sunny and warm, but afternoons in Idaho Springs may be cloudy, windy, and cool with rain or snow; be prepared for all types of mountain weather. As you travel westward from Denver into the mountains, successively older rocks are crossed. By studying the descriptions at the various mileage points and by taking time at each described STOP, you will get an excellent overview of the geologic events that shaped the Denver Basin and the mountains to the west. After traveling some 18 miles into the mountains, you will reach the old mining town of Idaho Springs. Here, you can learn about the two longest tunnels in the area-the Argo and Big Five Tunnels-and how the mine drainage affects the water of Clear Creek. The Argo Tunnel near the east end of Idaho Springs drains part of the large Central City and Idaho Springs hardrock mining districts and is a source of acid water (which contains arsenic and other heavy metals) that drains into Clear Creek. At the west end ofldaho Springs is the Big Five Tunnel. Near the tunnel entrance an experimental constructed wetland demonstrates technology for the remediation of acid-mine drainage and removal of arsenic and heavy metals. Take an opportunity to view this experimental method for treatment of mine drainage. For access to the wetlands, prior arrangements must be made with the Department of Environmental Sciences and Engineering Ecology or Department of Chemistry and Geochemistry, Colorado School of Mines in Golden, Colorado. Otherwise, the wetlands may be viewed from the road. Permission to enter the Argo Tunnel property may be obtained from Jim Maxwell of Idaho Springs, who owns the hot springs resort. The tunnel may also be viewed from public roads. After you leave Idaho Springs, the road log guides you down Clear Creek canyon, providing an opportunity to get a closer look at the various Precambrian rocks while traveling through one of Colorado's picturesque canyons.

Denver, Idaho Springs↗

USGS2019

New insights into the ecology of adfluvial Bull Trout and the population response to the Endangered Species Act in the North Fork Lewis River, Washington

Like many other salmonids, Bull Trout Salvelinus confluentus migratory life-history expressions are becoming increasingly rare. A critical step in effectively refining management and conservation strategies is a robust assessment of the effectiveness of such strategies and key biological information used in monitoring and recovery planning. To address this need, we integrated a variety of methods to evaluate the population demographics (abundance), vital rates (survival), and life-history characteristics (ageing, growth, spawning migrations and iteroparity) of an adfluvial Bull Trout population. We also employed our mark-recapture data to quantify if recruitment or adult survival had a greater contribution to population trends from year to year. Our results indicated Bull Trout spawning migrations vary with body size, as a considerable portion of smaller adults (<650 mm) did not spawn each year. Additionally, most spawning individuals made only one spawning migration, while <13% made three or more spawning migrations. Our abundance and survival data, which extends to the early 1990s, illustrated positive responses in survival and abundance following the protection of Bull Trout under the Endangered Species Act (1998). Over this period, we found high interannual variability in both survival and abundance, and adult survival (average = 0.45, SE = 0.04) was surprisingly lower than subadult individuals (average = 0.66, SE = 0.04), suggesting limitations at this important life stage. Our mark-recapture data also suggested the attributes driving the Bull Trout population trend (i.e., recruitment to the adult stage or adult survival) has varied through time, with declining trends in the relative contribution of recruitment. Our results provide new insights into the life-history patterns of adfluvial Bull Trout and can serve as a template to consider factors potentially limiting this and other native trout populations.

Washington↗

USGS2024

Feeding habits and ecological implications of the invasive Flathead Catfish in the Susquehanna River basin, Pennsylvania

Objective Flathead Catfish Pylodictis olivaris are a widespread aquatic invasive species within the United States and a recent invader in the Susquehanna River basin, Pennsylvania. Flathead Catfish are piscivores known to consume native and recreationally important fish species. In the mid-Atlantic United States, it is unknown how this invader is impacting food webs and which species may be at greatest predation risk. To address this knowledge gap, we DNA barcoded stomach contents collected from Flathead Catfish to identify prey species and elucidate potential predatory impacts of Flathead Catfish in the Susquehanna River. Methods We used a Bayesian hierarchical multivariate probit model to investigate if the probability of prey species occurrence in the diets of Flathead Catfish varied seasonally or was a function of Flathead Catfish length. Result A total of 576 Flathead Catfish were collected during 2020–2021, with 241 individuals having recoverable stomach contents. In all, we identified 47 different prey species. The most common prey species were rusty crayfish Faxonius rusticus , Margined Madtom Noturus insignis , and shiners Notropis spp . While frequency of occurrence of prey species differed across Flathead Catfish length classes (<300 mm, 301–600 mm, 601–900 mm TL), rusty crayfish were commonly found (33.7–44.0% of diets) in stomachs of all size-classes. Conclusion We found that Flathead Catfish length and seasonality did influence occurrence probability differentially for several prey species. For example, Channel Catfish Ictalurus punctatus were more likely to appear in shorter Flathead Catfish while Smallmouth Bass Micropterus dolomieu appeared in larger Flathead Catfish. We demonstrate significant variation in Flathead Catfish predation, increasing our understanding of predator–prey dynamics, which is necessary to better manage and identify future impacts to aquatic communities in the Susquehanna River basin.

Pennsylvania↗

USGS2018

Spatial variability and macro‐scale drivers of growth for native and introduced Flathead Catfish populations

Quantifying spatial variability in fish growth and identifying large‐scale drivers of growth are fundamental to many conservation and management decisions. Although fish growth studies often focus on a single population, it is becoming increasingly clear that large‐scale studies are likely needed for addressing transboundary management needs. This is particularly true for species with high recreational value and for those with negative ecological consequences when introduced outside of their native range, such as the Flathead Catfish Pylodictis olivaris . This study quantified growth variability of the Flathead Catfish across a large portion of its contemporary range to determine whether growth differences existed between habitat types (i.e., reservoirs and rivers) and between native and introduced populations. Additionally, we investigated whether growth parameters varied as a function of latitude and time since introduction (for introduced populations). Length‐at‐age data from 26 populations across 11 states in the USA were modeled using a Bayesian hierarchical von Bertalanffy growth model. Population‐specific growth trajectories revealed large variation in Flathead Catfish growth and relatively high uncertainty in growth parameters for some populations. Relatively high uncertainty was also evident when comparing populations and when quantifying large‐scale patterns. Growth parameters (Brody growth coefficient [ K ] and theoretical maximum average length [ L ∞ ]) were not different (based on overlapping 90% credible intervals) between habitat types or between native and introduced populations. For populations within the introduced range of Flathead Catfish, latitude was negatively correlated with K . For native populations, we estimated an 85% probability that L ∞ estimates were negatively correlated with latitude. Contrary to predictions, time since introduction was not correlated with growth parameters in introduced populations of Flathead Catfish. Results of this study suggest that Flathead Catfish growth patterns are likely shaped more strongly by finer‐scale processes (e.g., exploitation or prey abundances) as opposed to macro‐scale drivers.

Transactions of the American Fisheries Society↗

USGS2011

Effects of hypoxia on consumption, growth, and RNA:DNA ratios of young Yellow Perch

As in various freshwater and coastal marine ecosystems worldwide, seasonal bottom water hypoxia is a recurring phenomenon in Lake Erie’s central basin. While bottom hypoxia can strongly affect sessile benthic animals, its effects on mobile organisms such as fish are less understood. We evaluated the potential for bottom hypoxia to affect the growth rates of yellow perch Perca flavescens, a species of ecological and economic importance in the lake. To this end, we (1) conducted laboratory experiments to quantify the effects of reduced dissolved oxygen on consumption, somatic growth, and RNA:DNA ratios (an index of short-term growth) of young yellow perch and (2) explored the effects of bottom hypoxia on young yellow perch growth in Lake Erie’s central basin by collecting individuals in hypoxic and normoxic regions of the lake and quantifying their RNA:DNA ratios. Yellow perch consumption and growth in our experiments declined under hypoxic conditions (≤2 mg O2/L). While yellow perch RNA:DNA ratios responded strongly to experimental temperature, nucleic acid ratios were not significantly affected by dissolved oxygen or feeding ration. We did, however, observe a positive correlation between yellow perch growth and RNA:DNA ratios at low temperatures (11◦C). The nucleic acid ratios of yellow perch collected in Lake Erie varied spatiotemporally, but their patterns were not consistent with hypoxia. In short, while yellow perch consumption and growth rates respond directly and negatively to low oxygen conditions, these responses are not necessarily reflected in RNA:DNA ratios. Moreover, in central Lake Erie, where yellow perch can behaviorally avoid hypoxic areas, the RNA:DNA ratios of yellow perch do not respond strongly to bottom hypoxia. Thus, this study suggests that there is no strong negative effect of bottom hypoxia on the growth of young yellow perch in Lake Erie.

Transactions of the American Fisheries Society↗

USGS2014

Use of isotopic sulfur to determine whitebark pine consumption by Yellowstone bears: a reassessment

Use of naturally occurring stable isotopes to estimate assimilated diet of bears is one of the single greatest breakthroughs in nutritional ecology during the past 20 years. Previous research in the Greater Yellowstone Ecosystem (GYE), USA, established a positive relationship between the stable isotope of sulfur (δ 34 S) and consumption of whitebark pine (Pinus albicaulis) seeds. That work combined a limited sample of hair, blood clots, and serum. Here we use a much larger sample to reassess those findings. We contrasted δ 34 S values in spring hair and serum with abundance of seeds of whitebark pine in samples collected from grizzly (Ursus arctos) and American black bears (U. americanus) in the GYE during 2000–2010. Although we found a positive relationship between δ 34 S values in spring hair and pine seed abundance for grizzly bears, the coefficients of determination were small ( R 2  ≤ 0.097); we failed to find a similar relationship with black bears. Values of δ 34 S in spring hair were larger in black bears and δ 34 S values in serum of grizzly bears were lowest in September and October, a time when we expect δ 34 S to peak if whitebark pine seeds were the sole source of high δ 34 S. The relationship between δ 34 S in bear tissue and the consumption of whitebark pine seeds, as originally reported, may not be as clean a method as proposed. Data we present here suggest other foods have high values of δ 34 S, and there is spatial heterogeneity affecting the δ 34 S values in whitebark pine, which must be addressed.

Yellowstone National Park↗

USGS2025

Reconstructing relative abundance indices for Atlantic sturgeon using hierarchical ecological models

Objective The Atlantic Sturgeon Acipenser oxyrinchus is a wide-ranging, long-lived diadromous fish that is endangered in most of its range. Our objective was to develop and apply long-term, detection-corrected indices of relative abundance for juvenile and adult Atlantic Sturgeon in the Hudson River, New York, United States, to support population monitoring and stock assessment. Methods We used long-term gill-net catches to estimate relative abundances of juvenile and adult Atlantic Sturgeon while accounting for imperfect detection within an N- mixture modeling framework. We validated the model framework using a simulation–estimation framework based on mean parameter estimates from the adult Atlantic Sturgeon relative abundance index. Results Simulation testing indicated that absolute abundance estimates may be biased low due to poor characterization of detection probabilities. However, model estimates of relative abundance tracked simulated abundance trends well. Juvenile relative abundance estimates followed similar trends as raw gill-net catches but were less variable among years when corrected for detection probability. Relative abundance of juveniles increased from 2004 to 2015 prior to declining through 2022, with little evidence for change between the start and end of the survey. Detection-corrected indices for adult sturgeon indicated a consistent increase in relative abundance that was not readily apparent in raw catch indices. Conclusions Detection-corrected catch indices can provide improved characterization of Atlantic Sturgeon relative abundance dynamics over raw gill-net catches through use of N- mixture models. The approach has broad applicability to data types that are commonly collected for understanding population trends in stock assessment. Estimation of absolute abundance and other population demographics germane to management would benefit from alternative or auxiliary data collected through approaches such as side-scan sonar or acoustic telemetry, which are increasingly common for monitoring sturgeon populations.

New York↗

USGS2021

Upland burning and grazing as strategies to offset climate-change effects on wetlands

Wetland ecosystems perform a multitude of services valued by society and provide critical habitat for migratory birds and other wildlife. Despite their importance, wetlands have been lost to different local, regional, and global drivers. Remaining wetlands are extremely sensitive to changing temperature and precipitation regimes. Management of grassland areas in wetland catchments may be an effective strategy for counteracting potentially negative impacts of climate change on wetlands. Our objective was to estimate the effects of climate changes on wetland hydrology, and to explore strategies for increasing surface-water inputs to wetlands. We coupled a field study with process-based simulation modeling of wetland-water levels. We found that climate change could decrease the number of wetlands that hold ponded water during the waterfowl breeding season by 14% under a hot wet scenario or 29% under a hot dry scenario if no upland-management actions were taken. Upland burning reduced pond losses to 9% (hot wet) and 26% (hot dry). Upland grazing resulted in the smallest loss of ponded wetlands, 6% loss under the hot-and-wet scenario and 22% loss under the hot-and-dry scenario. Overall, water inputs could be increased by either burning or grazing of upland vegetation thereby reducing pond losses during the waterfowl breeding season. While field results suggest that both grazing and burning can reduce the vegetative structure that could lead to increases in runoff in grassland catchments, our model simulations indicated that additional actions may be needed for managers to minimize future meteorologically driven water losses.

Wetlands Ecology and Management↗

USGS2025

Electric field-induced detachment and vibration analysis for Sea Lamprey

Objective: Sea lamprey Petromyzon marinus , a known ecological threat to native fish populations in the Great Lakes, use their oral suction disc to navigate challenging environments when moving upstream to spawn. This study investigated the physiological response of adult sea lamprey to detach under pulsed direct current electric fields. Methods: Adult sea lampreys in an attaching position were exposed to pulsed direct current electric fields at four different field strengths (0.7, 1.1, 1.3, and 1.9 V/cm). Behavioral responses, including detachment and vibration, were observed and analyzed. Fast Fourier Transform analysis was applied to vibration data to quantify the frequency of vibration exhibited by non-detached sea lamprey. Statistical correlations between detachment rates and vibration responses to sea lamprey sex, weight, and length were evaluated to determine influencing factors. Results: The highest detachment rate (91%) was observed at 1.1 V/cm, with the detachment rate above 70% for other field strengths. Fast Fourier Transform analysis revealed that the vibration frequencies closely matched the signal while stronger fields elicited a more pronounced vibration amplitude without significantly increasing detachment. Non-detached sea lampreys exhibited “twitching” behavior synchronized with the electric field frequency. Sex, weight, and length had minimal influence on detachment rates and vibration responses. Conclusion: This study provided insights into the behavioral responses of sea lamprey under electric fields, highlighting the potential for optimizing electric deterrents for selective control. While not all sea lampreys detach during electroshocking, understanding their behavior can be crucial in maximizing detachment rates and contributing to improved management strategies for this invasive species.

Transactions of the American Fisheries Society↗

USGS2022

Identifying translocation sites for a climate relict population of Finescale Dace

Translocation is a management strategy that seeks to address threats to fish and wildlife populations by establishing new populations in ecologically suitable areas. Populations of Finescale Dace Chrosomus neogaeus in the Great Plains may benefit from translocation, as they exhibit a climate relict natural history that has led to a disjunct distribution and minimal dispersal opportunities. We assessed the translocation suitability of sites for Finescale Dace in the Belle Fourche River basin, Wyoming–South Dakota, using a ranking approach for output from multiple analyses. We used multivariate analysis to evaluate dissimilarity in fish occurrence and habitat between sites with and without Finescale Dace in contemporary surveys (2018–2019; n = 68). We further evaluated the capacity for sites to support Finescale Dace under base case and future climate change scenarios using the predicted probability of occurrence ( P ) from species distribution models (SDMs) fitted with basinwide fish occurrence data from surveys conducted in 2008–2019 ( n = 124) and spatially continuous environmental variables, including forecasted stream temperature scenarios. Sites with Finescale Dace tended to occur close to standing waterbodies, contained emergent vegetation cover, and did not exhibit large overlap in species-space with either native or nonnative species. Predicted P of Finescale Dace exhibited nonlinear relationships with mean August stream temperature, channel slope, and base flow index. The amount of suitable habitat (i.e., high predicted P ) declined with forecasted stream warming scenarios in the SDMs. This study highlights the utility of using field observations, historical data, and forecasted climate change scenarios to assess translocation site suitability and inform management of at-risk native fish populations, and the results may be transferable to other populations with limited data or restricted distributions.

South Dakota, Wyoming↗

USGS2024

Evaluating satellite-transmitter backpack-harness effects on greater sage-grouse survival and device retention in the Great Basin

Wildlife tracking studies have become ubiquitous in ecology and now provide previously unobtainable data regarding individual movement, vital rates, and population demographics. However, tracking devices can potentially reduce survival of study subjects, generating biases in the vital rates they seek to measure. Previous studies have found that greater sage-grouse ( Centrocercus urophasianus ) fitted with Global Positioning System (GPS) tracking devices may experience reduced survival, relative to those tracked with traditional radio transmitters, and have documented skin abrasions and lacerations associated with typical backpack-style GPS harnesses. We implemented an experimental study comparing survival and harness retention between 2 different backpack-style GPS transmitter harnesses. We captured female sage-grouse at 3 study sites in the northwest Great Basin of Oregon, Nevada, and California during 2019–2021. We fit each individual, following previously published recommendations, with either a standard backpack harness or a modified harness hypothesized to reduce skin abrasion and laceration. We used known-fate models in Program MARK to model variation in survival and harness retention separately as a function of harness type, year, age, a linear effect of time, and the ratio of the device to individual body mass. Neither survival nor retention varied systematically by harness type, however retention decreased as a function of body mass ratio. We echo previous recommendations for standardized harness attachment protocols and studies designed to isolate and test potential mechanisms by which tracking devices and attachment methods might affect survival and well-being of sage-grouse and other tracked species.

California Nevada, Oregon↗

USGS2026

Comparison of data handling techniques for modeling bat acoustic activity

With the proliferation of acoustic sampling to investigate bat distribution and ecology, researchers have implemented a myriad of statistical modeling approaches to interpret findings. Bats are taxa of high conservation concern; therefore, ensuring the accuracy of species-level habitat association models is critical for informing management. We sought to determine prediction differences among statistical approaches to modeling counts of acoustic detections, using generalized linear mixed models with 8 acoustic data-handling techniques. We applied each approach or combination of approaches to a rare species, the northern long-eared bat ( Myotis septentrionalis ), and a common species, the eastern red bat ( Lasiurus borealis ), from summer survey results on a landscape in south-central Pennsylvania, USA, 2024. We evaluated the accuracy of habitat association models of bat acoustic activity at the species level using cross-validation and compared resulting predictions of models using spatial correlations. We determined that filtering data by automated identification software (Kaleidoscope Pro), the maximum likelihood estimate (MLE) P -value thresholds reduced relative mean absolute error (rMAE) in cross-validation of northern long-eared bat models. Using the MLE-retained data produced the most accurate predictions over using raw data or the overly conservative match ratio data. However, for the eastern red bat, the results from the most conservative approach of only retaining data with at least a 90% match ratio from software development training sets had the lowest rMAE. We have provided evidence that the current standard of filtering data by nightly MLE can result in more accurate and informative habitat-use acoustic activity models for rare bat species.

Pennsylvania↗

USGS2011

Habitat selection and overlap of Atlantic salmon and smallmouth bass juveniles in nursery streams

Introduced smallmouth bass Micropterus dolomieu have invaded much of the historic freshwater habitat of Atlantic salmon Salmo salar in North America, yet little is known about the ecological interactions between the two species. We investigated the possibility of competition for habitat between age-0 Atlantic salmon and age-0 and age-1 smallmouth bass by means of in situ observations and a mesocosm experiment. We used snorkel observation to identify the degree and timing of overlap in habitat use in our in situ observations and to describe habitat shifts by Atlantic salmon in the presence of smallmouth bass in our mesocosm experiments. In late July 2008, we observed substantial overlap in the depths and mean water column velocities used by both species in sympatric in situ conditions and an apparent shift by age-0 Atlantic salmon to shallower water that coincided with the period of high overlap. In the mesocosm experiments, we detected no overlap or habitat shifts by age-0 Atlantic salmon in the presence age-1 smallmouth bass and low overlap and no habitat shifts of Atlantic salmon and age-0 smallmouth bass in fall 2009. In 2009, summer floods with sustained high flows and low temperatures resulted in the nearly complete reproductive failure of the smallmouth bass in our study streams, and we did not observe a midsummer habitat shift by Atlantic salmon similar to that seen in 2008. Although this prevented us from replicating our 2008 experiments under similar conditions, the virtual year-class failure of smallmouth bass itself is enlightening. We suggest that future studies incorporate the effects of varying temperature and discharge to determine how abiotic factors affect the interactions between these species and thus mediate the outcomes of potential competition.

Transactions of the American Fisheries Society↗