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At least 649 records · Page 36Linked to original sources
USGS2025

Quality of groundwater used for domestic supply in the Gilroy-Hollister basin and surrounding areas, California, 2022

More than 2 million Californians rely on groundwater from domestic wells for drinking-water supply. This report summarizes a 2022 California Groundwater Ambient Monitoring and Assessment Priority Basin Project (GAMA-PBP) water-quality survey of 33 domestic and small-system drinking-water supply wells in the Gilroy-Hollister Valley groundwater basin and the surrounding areas, where more than 20,000 residents are estimated to utilize privately owned domestic wells. The study area includes the Llagas subbasin in the north, the North San Benito subbasin in the south, and the surrounding uplands. The study was focused on groundwater resources used for domestic drinking-water supply, which are mostly drawn from shallower parts of aquifer systems rather than those of groundwater resources used for public drinking-water supply in the same area. This assessment characterized the quality of ambient groundwater in the aquifer before filtration or treatment, rather than the quality of drinking water delivered to the tap. To provide context, the measured concentrations of constituents in groundwater were compared to Federal and California State regulatory and non-regulatory benchmarks for drinking-water quality. A grid-based method was used to estimate the areal proportions of groundwater resources used for domestic drinking wells that have water-quality constituents present at high concentrations (above the benchmark), moderate concentrations (between one-half of the benchmark and the benchmark for inorganic constituents, or between one-tenth of the benchmark and the benchmark for organic constituents), and low concentrations (less than one-half or one-tenth the benchmark for inorganic and organic constituents, respectively). This method provides statistically representative results at the study-area scale and permits comparisons to other GAMA-PBP study areas. In the study area, inorganic constituents in groundwater were greater than regulatory benchmarks (U.S. Environmental Protection Agency [EPA] or State of California maximum contaminant levels [MCLs]) for public drinking-water quality in 24 percent of domestic groundwater resources. The inorganic constituents present at concentrations greater than MCLs for drinking water were nitrate (as nitrogen), barium, chromium, and selenium. Total dissolved solids (TDS) or manganese were present at concentrations greater than the secondary maximum contaminant levels (SMCLs) that the State of California uses as aesthetic-based benchmarks in 48 percent of domestic groundwater resources. No volatile organic compounds or pesticide constituents were present at concentrations greater than regulatory benchmarks. Total coliform bacteria and enterococci were detected in 4 percent of domestic groundwater resources. Per- and polyfluoroalkyl substances (PFAS) were detected in 19 percent of domestic groundwater resources, and 10 percent had concentrations greater than recently enacted (April 2024) EPA MCLs. Physical and chemical factors from natural and anthropogenic sources that could affect the groundwater quality were evaluated using results from statistical testing of associations between constituent concentrations and potential explanatory variables. In this study, relevant physical factors include well construction characteristics, groundwater age, site proximity to groundwater recharge or discharge zones, and potential sources of contamination. Relevant chemical factors include the initial chemistry of the recharge water, the mineralogy of the aquifer sediments, and the subsequent shifts in chemistry as biologic and geologic reactions alter groundwater in the subsurface. Nitrate concentrations were correlated to agricultural land use, distance from the boundary of the Gilroy-Hollister Valley groundwater basin, and the proportion of modern (post-1950s) water captured by the well. Denitrification under anoxic redox conditions can mitigate some nitrate derived from fertilizer application. Total dissolved solids primarily were derived from water-rock interactions with soils and aquifer materials in the study area, but there were high concentrations where agricultural practices contributed additional TDS. Mineralogy of aquifer sediments and rocks also affect barium, selenium, boron, and chromium concentrations in the Gilroy-Hollister Valley groundwater basin. PFAS were positively correlated with urban land use and the proportion of modern water captured by the well.

California↗
USGS2002

Ground-water quality in the Santa Ana Watershed, California: Overview and data summary

Water-quality samples were collected from 207 wells in the Santa Ana Basin in the Coastal Range Province of southern California to assess the occurrence and distribution of dissolved constituents in ground water as part of the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) program. These wells were sampled during eight studies from 1999 to 2001 that were designed to sample the used water resource at different scales: (1) three studies characterized water quality at a regional scale; (2) two studies focused on spatial and temporal variations in water quality along flow paths; (3) a land-use study focused on evaluation of water quality in shallow ground water; and (4) two studies assessed aquifer susceptibility to contamination. The Santa Ana Basin is divided into the Coastal Basin, the Inland Basin, and the San Jacinto Basin. The Coastal Basin includes a relatively small unconfined recharge area and a relatively large confined area where ground-water pumping is the primary source of discharge. Land use is almost entirely urban. The Inland Basin is predominantly unconfined and land use is urban and agricultural. The San Jacinto Basin is largely unconfined and land use is mostly agricultural. Water-quality data discussed in this report are compared with U.S. Environmental Protection Agency (EPA) drinking-water standards, both primary and secondary. Most exceedances of maximum contaminant levels (MCLs) occurred in the shallow, coastal monitoring wells that tap ground water not used for water supply. Water from several irrigation wells in the Inland and San Jacinto basins exceeded the 10 mg/L (milligrams per liter) MCL for nitrate. Water from some wells exceeded secondary MCLs for manganese (50 ?g/L [micrograms per liter]) and iron (300 ?g/L) and (or) proposed MCLs for arsenic (10 ?g/L) and uranium (30 ?g/L). Of the 94 production wells sampled for trace elements, 3 irrigation wells in the Coastal Basin produced water that exceeded the secondary MCL for manganese. Water from production wells sampled in all three subbasins exceeded the proposed MCL for radon (300 pCi/L [picocuries per liter]). Pesticides were detected above the laboratory reporting limit (LRL) in 50 percent of the production and monitoring wells sampled in the Santa Ana Basin. Deethylatrazine, simazine, atrazine, tebuthiuron, and prometon were the five most commonly detected pesticides in the current USGS studies. All pesticide concentrations detected in these studies were below MCLs established by the EPA. Volatile organic compounds (VOCs) were detected in 115 wells (56 percent) of the 207 wells sampled. Of the 38 VOCs detected, only 13 were detected in more than five wells. The most commonly detected VOCs, in order of detection frequency, were chloroform; trichloroethlyene, TCE; 1,1,1-trichloroethane, TCA; trichlorofluoromethane, CFC 11; 1,1,2-trichloro-1,2,2-trifluoroethane, CFC 113; tetrachloroethylene, PCE; bromodichloromethane; methyl tert-butyl ether, MTBE; 1,1-dichloroethene, 1-1-DCE; and 1,2- dichloroethene, 1,2-DCE. The only exceedances of EPA MCLs for VOCs occurred in six irrigation wells and in two deep monitoring wells sampled in the Inland Basin.

California↗
USGS2000

Benthic macroinvertebrate assemblages and their relations with environmental variables in the Sacramento and San Joaquin River drainages, California, 1993-1997

Data were collected in the San Joaquin and Sacramento river drainages to evaluate associations between macroinvertebrate assemblages and environmental variables as part of the National Water-Quality Assessment Program of the U.S. Geological Survey. Samples were collected at 53 sites from 1993 to 1995 in the San Joaquin River drainage and in 1996 and 1997 in the Sacramento River drainage. Macroinvertebrates were collected from riffles or from large woody debris (snags) when riffles were absent. Macroinvertebrate taxa were aggregated to the family (or higher) level of taxonomic organization, resulting in 81 taxa for analyses. Only the 50 most common taxa were used for two-way indicator species analysis (TWINSPAN) and canonical correspondence analysis. TWINSPAN analysis defined four groups of riffle samples and four groups of snag samples based on macroinvertebrate assemblages. Analysis of variance identified differences in environmental and biotic characteristics of the groups. These results combined with the results of canonical correspondence analysis indicated that patterns in riffle sample assemblage structure were highly correlated with a gradient in physical and chemical conditions associated with elevation. The results also suggested that flow regulation associated with large storage reservoirs has negative effects on the total number of taxa and density of macroinvertebrates below foothill dams. Analysis of the snag samples showed that, although elevation remained a significant variable, mean dominant substrate size, gradient, specific conductance, water temperature, percentage of the basin in agricultural land use, and percentage of the basin in combined agricultural and urban land uses were more important factors in explaining assemblage structure. Macroinvertebrate assemblages on snags may be useful in family level bioassessments of environmental conditions in valley floor habitats. In the Sierra Nevada and its foothills, the strong influence of elevation made it difficult to attribute differences in macroinvertebrate assemblage structure among sites to specific environmental conditions. Additional work is needed in the foothills and Sierra Nevada to better define macroinvertebrate assemblages and their relations to environmental variables.

Water-Resources Investigations Report↗
USGS2012

Assessment of regional change in nitrate concentrations in groundwater in the Central Valley, California, USA, 1950s-2000s

A regional assessment of multi-decadal changes in nitrate concentrations was done using historical data and a spatially stratified non-biased approach. Data were stratified into physiographic subregions on the basis of geomorphology and soils data to represent zones of historical recharge and discharge patterns in the basin. Data were also stratified by depth to represent a shallow zone generally representing domestic drinking-water supplies and a deep zone generally representing public drinking-water supplies. These stratifications were designed to characterize the regional extent of groundwater with common redox and age characteristics, two factors expected to influence changes in nitrate concentrations over time. Overall, increasing trends in nitrate concentrations and the proportion of nitrate concentrations above 5 mg/L were observed in the east fans subregion of the Central Valley. Whereas the west fans subregion has elevated nitrate concentrations, temporal trends were not detected, likely due to the heterogeneous nature of the water quality in this area and geologic sources of nitrate, combined with sparse and uneven data coverage. Generally low nitrate concentrations in the basin subregion are consistent with reduced geochemical conditions resulting from low permeability soils and higher organic content, reflecting the distal portions of alluvial fans and historical groundwater discharge areas. Very small increases in the shallow aquifer in the basin subregion may reflect downgradient movement of high nitrate groundwater from adjacent areas or overlying intensive agricultural inputs. Because of the general lack of regionally extensive long-term monitoring networks, the results from this study highlight the importance of placing studies of trends in water quality into regional context. Earlier work concluded that nitrate concentrations were steadily increasing over time in the eastern San Joaquin Valley, but clearly those trends do not apply to other physiographic subregions within the Central Valley, even where land use and climate are similar.

California↗
USGS2015

Evaluation of perchlorate sources in the Rialto-Colton and Chino California subbasins using chlorine and oxygen isotope ratio analysis

Perchlorate (ClO4-) in groundwater can be from synthetic or natural sources, the latter of which include both historical application of imported nitrate fertilizers from the Atacama Desert of Chile and naturally deposited ClO4- that forms atmospherically and accumulates in arid regions such as the southwestern US. The objective of this study was to evaluate the use of isotopic data to distinguish sources of ClO4- in groundwater in a specific region of the Rialto-Colton and Chino, CA groundwater subbasins (Study Area). This region includes two groundwater ClO4- plumes emanating from known military/industrial source areas, and a larger area outside of these plumes having measurable ClO4-. Perchlorate extracted from wells in this region was analyzed for chlorine and oxygen stable isotope ratios (δ37Cl, δ18O, δ17O) and radioactive chlorine-36 (36Cl) isotopic abundance, along with other geochemical, isotopic, and hydrogeologic data. Isotope data indicate synthetic, Atacama, and indigenous natural ClO4- were present in the Study Area. Stable isotope data from nearly all sampled wells within the contours of the two characterized plumes, including those located in a perched zone and within the regional groundwater aquifer, were consistent with a dominant synthetic ClO4- source. In wells downgradient from the synthetic plumes and in the Chino subbasin to the southwest, isotopic data indicate the dominant source of ClO4- largely was Atacama, presumably from historical application of nitrate fertilizer in this region. Past agricultural land use and historical records are consistent with this source being present in groundwater. The 36Cl and δ18O data indicate that wells having predominantly synthetic or Atacama ClO4- also commonly contained small fractions of indigenous natural ClO4-. The indigenous ClO4- was most evident isotopically in wells having the lowest overall ClO4- concentrations (< 1 μg/L), consistent with its occurrence as a low-level background constituent in the region. A small subset of wells outside the contours of the two synthetic plumes, including an upgradient well, had characteristics indicating small amounts of synthetic ClO4- mixed with one or both of the natural source types. Hydrogeologic data indicate synthetic ClO4- in the upgradient well may be from a source other than the identified plume sources, but it is not known whether this source might also be present in other wells at low concentrations. The stable isotope and 36Cl data provided relatively unambiguous discrimination of synthetic and Atacama ClO4- sources in most wells having relatively high concentrations, providing regional perspective on anthropogenic ClO4- contamination in the Rialto-Colton and Chino subbasins. Where indigenous natural ClO4- was indicated as a substantial component, total ClO4- concentrations were low and concentrations of anthropogenic components were near background levels.

California↗
USGS1995

Nonpoint sources of pesticides in the San Joaquin River, California; input from winter storms, 1992-93

Organophosphate insecticides, including chlor- pyrifos, diazinon, and methidathion, are applied to dormant orchards in the San Joaquin Valley, California, during late December through January. This time frame coincides with the period of heaviest rainfall in the valley, and rainfall mobilizes a portion of these pesticides from the orchards. The pesticides enter the San Joaquin River and have been detected along the perennial reach of the river. A storm on the evening of February 7 and the morning of February 8, 1993, deposited more than an inch and a half of rain in the San Joaquin Valley. Two distinct peaks of organophosphate pesticide concentrations were measured at the mouth of the San Joaquin River during a single rise in discharge. Both peaks were attributed to contrasts between the soil texture and hydrology of the eastern and western valley. The fine soil texture and small size of the western tributary basins contributed to rapid runoff. Diazinon concentrations peaked within hours after rainfall ended and then decreased because of a combination of dilution with pesticide-free runoff from the nearby Coast Ranges and decreased pesticide concentrations in the agricultural runoff. Data for the Merced River, a large tributary of the eastern San Joaquin Valley, are sparse, but indicate that peak concentrations occurred at least a day after those of the western tributary streams. That delay may be due to the presence of well-drained soils, the larger size of the drainage basins, and the management of surface-water drainage networks. Runoff from a subsequent storm, on February 18 and 19, contained significantly lower concentrations of most organophosphate pesticides, indicating that runoff from the first storm had already removed most of the pesticides available for rainfall-induced transport.

Open-File Report↗
USGS2013

Methods, quality assurance, and data for assessing atmospheric deposition of pesticides in the Central Valley of California

The U.S. Geological Survey monitored atmospheric deposition of pesticides in the Central Valley of California during two studies in 2001 and 2002–04. The 2001 study sampled wet deposition (rain) and storm-drain runoff in the Modesto, California, area during the orchard dormant-spray season to examine the contribution of pesticide concentrations to storm runoff from rainfall. In the 2002–04 study, the number and extent of collection sites in the Central Valley were increased to determine the areal distribution of organophosphate insecticides and other pesticides, and also five more sample types were collected. These were dry deposition, bulk deposition, and three sample types collected from a soil box: aqueous phase in runoff, suspended sediment in runoff, and surficial-soil samples. This report provides concentration data and describes methods and quality assurance of sample collection and laboratory analysis for pesticide compounds in all samples collected from 16 sites. Each sample was analyzed for 41 currently used pesticides and 23 pesticide degradates, including oxygen analogs (oxons) of 9 organophosphate insecticides. Analytical results are presented by sample type and study period. The median concentrations of both chloryprifos and diazinon sampled at four urban (0.067 micrograms per liter [μg/L] and 0.515 μg/L, respectively) and four agricultural sites (0.079 μg/L and 0.583 μg/L, respectively) during a January 2001 storm event in and around Modesto, Calif., were nearly identical, indicating that the overall atmospheric burden in the region appeared to be fairly similar during the sampling event. Comparisons of median concentrations in the rainfall to those in the McHenry storm-drain runoff showed that, for some compounds, rainfall contributed a substantial percentage of the concentration in the runoff; for other compounds, the concentrations in rainfall were much greater than in the runoff. For example, diazinon concentrations in rainfall were about 70 percent of the diazinon concentration in the runoff, whereas the chlorpyrifos concentration in the rain was 1.8 times greater than in the runoff. The more water-soluble pesticides—carbaryl, metolachlor, napropamide, and simazine—followed the same pattern as diazinon and had lower concentrations in rain compared to runoff. Similar to chlorpyrifos,compounds with low water solubilities and higher soil-organic carbon partition coefficients, including dacthal, pendimethalin, and trifluralin, were found to have higher concentrations in rain than in runoff water and were presumed to partition to the suspended sediments and organic matter on the ground. During the 2002–04 study period, the herbicide dacthal had the highest detection frequencies for all sample types collected from the Central Valley sites (67–100 percent). The most frequently detected compounds in the wet-deposition samples were dacthal, diazinon, chlorpyrifos, and simazine (greater than 90 percent). The median wet-deposition amounts for these compounds were 0.044 micrograms per square meter per day (μg/m 2 /day), 0.209 μg/m 2 /day, 0.079 μg/m 2 /day, and 0.172 μg/m 2 /day, respectively. For the dry-deposition samples, detection frequencies were greater than 73 percent for the compounds dacthal, metolachor, and chlorpyrifos, and median deposition amounts were an order of magnitude less than for wet deposition. The differences between wet deposition and dry deposition appeared to be closely related to the Henry’s Law (H) constant of each compound, although the mass deposited by dry deposition takes place over a much longer time frame. Pesticides detected in rainfall usually were detected in the aqueous phase of the soil-box runoff water, and the runoff concentrations were generally similar to those in the rainfall. For compounds detected in the aqueous phase and suspended-sediment samples of soil-box runoff, concentrations of pesticides in the aqueous phase generally were detected in low concentrations and had few corresponding detections in the suspended- sediment samples. Dacthal, diazinon, chlorpyrifos, and simazine were the most frequently detected pesticides (greater than 83 percent) in the aqueous-phase samples, with median concentrations of 0.010 μg/L, 0.045 μg/L, 0.016 μg/L, and 0.077 μg/L, respectively. Simazine was the most frequently detected compound in the suspended-sediment samples (69 percent), with a median concentration of 0.232 μg/L. Results for compounds detected in the surficial-soil samples collected throughout the study period showed that there was an increase in concentration for some compounds, indicating atmospheric deposition of these compounds onto the soil-box surface. In the San Joaquin Valley, the compounds chlorpyrifos, dacthal, and iprodione were detected at higher concentrations (between 1.4 and 2 times greater) than were found in the background samples collected from the San Joaquin Valley soil-box sites. In the Sacramento Valley, the compounds chlorpyrifos, dacthal, iprodione, parathionmethyl, and its oxygen analog, paraoxon-methyl, were detected in samples collected during the study period in low concentrations, but were not detected in the background concentration of the Sacramento Valley soil mix.

California↗
USGS1998

Environmental setting of the San Joaquin-Tulare basins, California

The National Water-Quality Assessment Program for the San Joaquin-Tulare Basins began in 1991 to study the effects of natural and anthropogenic influences on the quality of ground water, surface water, biology, and ecology. The San Joaquin-Tulare Basins study unit, which covers approximately 31,200 square miles in central California, is made up of the San Joaquin Valley, the eastern slope of the Coast Ranges to the west, and the western slope of the Sierra Nevada to the east. The sediments of the San Joaquin Valley can be divided into alluvial fans and basin deposits. The San Joaquin River receives water from tributaries draining the Sierra Nevada and Coast Ranges, and except for streams discharging directly to the Sacramento-San Joaquin Delta, is the only surface- water outlet from the study unit. The surface-water hydrology of the San Joaquin-Tulare Basins study unit has been significantly modified by development of water resources. Almost every major river entering the valley from the Sierra Nevada has one or more reservoirs. Almost every tributary and drainage into the San Joaquin River has been altered by a network of canals, drains, and wasteways. The Sierra Nevada is predominantly forested, and the Coast Ranges and the foothills of the Sierra Nevada are predominately rangeland. The San Joaquin Valley is dominated by agriculture, which utilized approximately 14.7 million acre-feet of water and 597 million pounds active ingredient of nitrogen and phosphorus fertilizers in 1990, and 88 million pounds active ingredient of pesticides in 1991. In addition, the livestock industry contributed 318 million pounds active ingredient of nitrogen and phosphorus from manure in 1987. This report provides the background information to assess the influence of these and other factors on water quality and to provide the foundation for the design and interpretation of all spatial data. These characterizations provide a basis for comparing the influences of human activities among basins and specific land use settings, as well as within and among study units at the national level.

California↗
USGS2023

Changes in habitat suitability for wintering dabbling ducks during dry conditions in the Central Valley of California

In arid and Mediterranean regions, landscape-scale wetland conservation requires understanding how wildlife responds to dynamic freshwater availability and conservation actions to enhance wetland habitat. Taking advantage of Landsat satellite data and structured and community science bird survey data, we built species distribution models to describe how three duck species, the Northern Pintail ( Anas acuta ), Green-winged Teal ( Anas crecca ), and Northern Shoveler ( Anas clypeata ), respond to freshwater supply and food resources on different flooded land cover types in the Central Valley of California. Specifically, our models compared duck habitat suitability between the wettest and driest conditions in each month from September through April. Using abundance-weighted boosted regression trees, we created three sets of species occurrence models based on different covariates: (1) near real-time (hereafter “real-time”) covariates in which duck observations were matched to the water availability within the 16-day window of a Landsat observation, (2) a combination of real-time covariates and waterfowl food resource covariates describing annual corn and rice biomass and managed wetland moist soil seed yield estimates derived from Landsat data, and (3) long-term average covariates—the most common approach to species distribution modeling—in which long-term average surface water availability was used. We modeled the monthly occurrence of three duck species as a function of surface water availability, land cover type, road density, temperature, and bird data source. We found that dry conditions result in reduced habitat suitability, with the biggest reductions in November through January and in agricultural fields; in contrast, suitability of flooded wetland habitat was relatively robust to surface water availability. When models of habitat suitability based on long-term average climate conditions were compared to models based on real-time conditions, the highest long-term suitability values occurred in areas where suitability was high regardless of whether it was a wet or a dry year. While all models performed well, the inclusion of crop and wetland plant yield covariates resulted in slightly higher model performance. Overall, species distribution models created using data on the environmental conditions present at the time of bird observations can aid conservation efforts under extreme conditions over large spatial scales.

California↗
USGS1997

Results of a prototype surface water network design for pesticides developed for the San Joaquin River Basin, California

A nested surface water monitoring network was designed and tested to measure variability in pesticide concentrations in the San Joaquin River and selected tributaries during the irrigation season. The network design an d sampling frequency necessary for determining the variability and distribution in pesticide concentrations were tested in a prototype study. The San Joaquin River Basin, California, was sampled from April to August 1992, a period during the irrigation season where there was no rainfall. Orestimba Creek, which drains a part of the western San Joaquin Valley, was sampled three times per week for 6 weeks, followed by a once per week sampling for 6 weeks, and the three times per week sampling for 6 weeks. A site on the San Joaquin River near the mouth of the basin, and an irrigation drain of the eastern San Joaquin Valley, were sampled weekly during the entire sampling period. Pesticides were most often detected in samples collected from Orestimba Creek. This suggests that the western valley was the principal source of pesticides to the San Joaquin River during the irrigation season. Irrigation drainage water was the source of pesticides to Orestimba Creek. Pesticide concentrations of Orestimba Creek showed greater temporal variability when sampled three times per week than when sampled once a week, due to variations in field management and irrigation. The implication for the San Joaquin River basin (an irrigation-dominated agricultural setting) is that frequent sampling of tributary sites is necessary to describe the variability in pesticides transported to the San Joaquin River.

Journal of Hydrology↗
USGS1981

Water resources of the Santa Ysabel and Mesa Grande Indian Reservations, San Diego County, California

The Santa Ysabel (consisting of three tracts) and Mesa Grande Indian Reservations are in north-central San Diego County, Calif. On both reservations fractured and weathered igneous and metamorphic rocks and alluvium are water bearing; however, no wells are known to derive their water entirely from alluvium. Well yields range from 2.5 to 250 gallons per minute. Springs occur where saturated fractured or weathered material intersects the land surface. Spring discharge ranged from 0 gallon per minute (November 1979) to 9.4 gallons per minute (November 1979). Few data are available for the surface water characteristics of the study area. One-time measurements of discharge at selected stream sites were made in late November 1979 and late May 1980; discharges ranged from less than 0.01 cubic foot per second to an estimated 3 cubic feet per second. Further study of the surface-water systems would provide a basis for estimating their development potential. The existing water-supply development on the Santa Ysabel Indian Reservation is adequate for the present residents. The Mesa Grande reservation was unoccupied in 1952, was reportedly unoccupied in November 1979, and has no developed water supply. Additional water can be developed for both reservations from the igneous and metamorphic rock, from presently undeveloped springs, and from perennial reaches of the larger streams. Except for excessive iron and sodium at some ground-water sites and excessive sodium at a few surface-water sites, the water is of suitable quality for domestic and agricultural use. (USGS)

Open-File Report↗
USGS2001

Declining ring-necked pheasants in the Klamath Basin, California: II. Survival, productivity, and cover

Cover condition and its influence on nesting success, survival, and body condition of ring-necked pheasants (Phasianus colchicus) were evaluated at Tule Lake National Wildlife Refuge (TLNWR) and Lower Klamath National Wildlife Refuge (LKNWR). Inadequate nesting cover was responsible for extremely low nest success early in the nesting season at TLNWR. Later in the season at TLNWR, spring-planted crops provided cover to conceal nesting and renesting hens; however, only 0.07 young were produced (to 1 August) per hen during the study. The extremely low reproductive rates were well below those required to maintain a stable population. At TLNWR, most adult mortality during spring and early summer (before crops provided adequate cover) apparently resulted from predation by golden eagles (Aquila chrysaetos). This mortality occurred weeks before insecticide applications. Hard winters (cold temperatures and heavy snowfall) periodically reduce the pheasant population in the Klamath Basin and again greatly reduced numbers during the last year of this study. Unfortunately, pheasant populations declined under the conditions found during this study and were unable to recover from the hard winter of 1992 to 1993. Mean body mass and tarsal length of adult hen pheasants at TLNWR, which is intensively farmed, were less than those for hens at LKNWR, which is not intensively farmed. Results of our study suggest that TLNWR hens may have been nutritionally stressed, and that the amount and distribution of vegetative cover needs to be improved at TLNWR. Habitat management of edge cover along agricultural crops should feature perennial grasses and legumes with small tracts of land interspersed throughout the agricultural fields to provide alternative cover for wildlife in general including pheasants.

Northwestern Naturalist↗
USGS1998

Assemblages of fishes and their associations with environmental variables, lower San Joaquin River drainage, California

Twenty sites in the lower San Joaquin River drainage, California, were sampled from 1993 to 1995 to characterize fish assemblages and their associations with measures of water quality and habitat quality. In addition, four fish community metrics were assessed, including percentages of native fish, omnivorous fish, fish intolerant of environmental degradation, and fish with external anomalies. Of the 31 taxa of fish captured during the study, only 10 taxa were native to the drainage. Multivariate analyses of percentage data identified four site groups characterized by characterized by different groups of species. The distributions of fish species were related to specific conductance, gradient, and mean depth; however, specific conductance acted as a surrogate variable for a large group of correlated variables. Two of the fish community metrics--percentage of introduced fish and percentage of intolerant fish--appeared to be responsive to environmental quality but the responses of the other two metrics--percentage of omnivorous fish and percentage of fish with anomalies--were less direct. The conclusion of the study is that fish assemblages are responsive to environmental conditions, including conditions associated with human-caused disturbances, particularly agriculture and water development. The results suggest that changes in water management and water quality could result in changes in species distributions. Balancing the costs and benefits of such changes poses a considerable challenge to resource managers. different groups of species.

Open-File Report↗
USGS2011

Status and understanding of groundwater quality in the San Diego Drainages Hydrogeologic Province, 2004: California GAMA Priority Basin Project

Groundwater quality in the approximately 3,900-square-mile (mi 2 ) San Diego Drainages Hydrogeologic Province (hereinafter San Diego) study unit was investigated from May through July 2004 as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The study unit is located in southwestern California in the counties of San Diego, Riverside, and Orange. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory. The GAMA San Diego study was designed to provide a statistically robust assessment of untreated-groundwater quality within the primary aquifer systems. The assessment is based on water-quality and ancillary data collected by the USGS from 58 wells in 2004 and water-quality data from the California Department of Public Health (CDPH) database. The primary aquifer systems (hereinafter referred to as the primary aquifers) were defined by the depth interval of the wells listed in the California Department of Public Health (CDPH) database for the San Diego study unit. The San Diego study unit consisted of four study areas: Temecula Valley (140 mi 2 ), Warner Valley (34 mi 2 ), Alluvial Basins (166 mi 2 ), and Hard Rock (850 mi 2 ). The quality of groundwater in shallow or deep water-bearing zones may differ from that in the primary aquifers. For example, shallow groundwater may be more vulnerable to surficial contamination than groundwater in deep water-bearing zones. This study had two components: the status assessment and the understanding assessment. The first component of this study-the status assessment of the current quality of the groundwater resource-was assessed by using data from samples analyzed for volatile organic compounds (VOC), pesticides, and naturally occurring inorganic constituents, such as major ions and trace elements. The status assessment is intended to characterize the quality of groundwater resources within the primary aquifers of the San Diego study unit, not the treated drinking water delivered to consumers by water purveyors. The second component of this study-the understanding assessment-identified the natural and human factors that affect groundwater quality by evaluating land use, well construction, and geochemical conditions of the aquifer. Results from these evaluations were used to help explain the occurrence and distribution of selected constituents in the study unit. Relative-concentrations (sample concentration divided by benchmark concentration) were used as the primary metric for relating concentrations of constituents in groundwater samples to water-quality benchmarks for those constituents that have Federal and (or) California benchmarks. For organic and special-interest constituents, relative-concentrations were classified as high (> 1.0), moderate (> 0.1 and &le;1.0), and low (&le;0.1). For inorganic constituents, relative concentrations were classified as high (> 1.0), moderate (> 0.5 and &le;1.0), and low (&le;0.5). Grid-based and spatially weighted approaches were then used to evaluate the proportion of the primary aquifers (aquifer-scale proportions) with high, moderate, and low relative-concentrations for individual compounds and classes of constituents. One or more of the inorganic constituents with health-based benchmarks were high (relative to those benchmarks) in 17.6 percent of the primary aquifers in the Temecula Valley, Warner Valley, and Alluvial Basins study areas (hereinafter also collectively referred to as the Alluvial Fill study areas because they are composed of alluvial fill aquifers), and in 25.0 percent of the Hard Rock study area. Inorganic constituents with health-based benchmarks that were frequently detected at high relative-concentrations included vanadium (V), arsenic (As), and boron (B). Vanadium and As concentrations were not significantly correlated to either urban or agricultural land use indicating natural sources as the primary contributors of these constituents to groundwater. The positive correlation of B concentration to urban land-use was significant which indicates that anthropogenic activities are a contributing source of B to groundwater. The correlation of V, As and B concentrations to pH was positive, indicating that in alkaline groundwater these constituents are being desorbed from, or being inhibited from adsorbing to, particle surfaces. Inorganic constituents with aesthetic benchmarks that were detected at high relative-concentrations include manganese (Mn), iron (Fe), and total dissolved solids (TDS). In the Alluvial Fill study areas, Mn and TDS were detected at high relative-concentrations in 13.7 percent of the primary aquifers, and Fe in 6.9 percent. In the Hard Rock study area, Mn was detected at high relative-concentrations in 33.3 percent of the primary aquifers, and TDS in 16.7 percent; Fe was not detected at high relative-concentrations. Total dissolved solids concentrations were significantly correlated to agricultural land use suggesting that agricultural practices are a contributing source of TDS to groundwater. Manganese and Fe concentrations were highest in groundwater with low dissolved oxygen and pH indicating that the reductive dissolution of oxyhydroxides may be an important mechanism for the mobilization of Mn and Fe in groundwater. TDS concentrations were highest in shallow wells and in modern (< 50 yrs) groundwater which indicates anthropogenic activities as a source of TDS concentrations in groundwater. The relative-concentrations of organic constituents with health-based benchmarks were high in 3.0 percent of the primary aquifers in the Alluvial Fill study areas. A single detection in the Alluvial Basins study area of the discontinued gasoline oxygenate methyl tert-butyl ether (MTBE) was the only organic constituent detected at a high relative-concentration; high relative-concentrations of these constituents were not detected in the Hard Rock study area. Twelve of 88 VOCs and 14 of 123 pesticides and pesticide degradates analyzed in grid wells were detected. Chloroform was the only VOC detected in more than 10 percent of the grid wells. The herbicides simazine, atrazine, and prometon were each detected in greater than 10 percent of the grid wells. Perchlorate was detected in 22 percent of the grid wells sampled. The understanding assessment showed a significant correlation of trihalomethanes (THMs) and solvents to urban land-use, indicating that detections of these constituents are more likely to occur in groundwater underlying urbanized areas of the study unit. MTBE concentrations were negatively correlated to the distance from the nearest leaking underground fuel tank, indicating that point sources are the most significant contributing factor for MTBE concentrations to groundwater in the study unit. The positive correlation of THM and herbicide concentrations to modern groundwater was significant, as was the negative correlation of herbicide concentrations to pH and anoxic groundwater. The negative correlation of herbicides to pH and anoxic groundwater was likely due to the fact that these constituents were detected more frequently in shallow wells where groundwater conditions tend to be oxic with relatively low pH.

California↗
USGS1999

Trace elements and organic compounds in streambed sediment and aquatic biota from the Sacramento River Basin, California, October and November 1995

Elevated levels of trace elements and hydrophobic organic compounds were detected in streambed sediments and aquatic biota [Asiatic clam (Corbicula fluminea) or bottom-feeding fish] of the Sacramento River Basin, California, during October and November 1995. Trace elements detected included cadmium, copper, mercury, lead, and zinc. Elevated levels of cadmium, copper, and zinc in the upper Sacramento River are attributed to a mining land use, and elevated levels of zinc and lead in an urban stream, and possibly in the lower Sacramento River, are attributed to urban runoff processes. Elevated levels of mercury in streambed sediment are attributed to either past mercury mining or to the use of mercury in past gold mining operations. Mercury mining was an important land use within the Coast Ranges in the past and gold mining was an important land use of the Sierra Nevada in the past. Mercury was the only trace element found in elevated levels in the tissue of aquatic biota, and those levels also could be attributed to either mining or urban runoff. Hydrophobic organic compounds also were detected in streambed sediments and aquatic biota. The most frequently detected compounds were DDT and its breakdown products, dieldrin, oxychlordane, and toxaphene. Differences were found in the types of compounds detected at agricultural sites and the urban site. Although both types of sites had measurable concentrations of DDT or its breakdown products, the urban site also had measurable concentrations of pesticides used for household pest control. Few semivolatile compounds were detected in the streambed sediments of any site. The semivolatile compound p-cresol, a coal-tar derivative associated with road maintenance, was found in the highest concentration.

Water-Resources Investigations Report↗
USGS2014

Documentation of a groundwater flow model (SJRRPGW) for the San Joaquin River Restoration Program study area, California

To better understand the potential effects of restoration flows on existing drainage problems, anticipated as a result of the San Joaquin River Restoration Program (SJRRP), the U.S. Geological Survey (USGS), in cooperation with the U.S. Bureau of Reclamation (Reclamation), developed a groundwater flow model (SJRRPGW) of the SJRRP study area that is within 5 miles of the San Joaquin River and adjacent bypass system from Friant Dam to the Merced River. The primary goal of the SJRRP is to reestablish the natural ecology of the river to a degree that restores salmon and other fish populations. Increased flows in the river, particularly during the spring salmon run, are a key component of the restoration effort. A potential consequence of these increased river flows is the exacerbation of existing irrigation drainage problems along a section of the river between Mendota and the confluence with the Merced River. Historically, this reach typically was underlain by a water table within 10 feet of the land surface, thus requiring careful irrigation management and (or) artificial drainage to maintain crop health. The SJRRPGW is designed to meet the short-term needs of the SJRRP; future versions of the model may incorporate potential enhancements, several of which are identified in this report. The SJRRPGW was constructed using the USGS groundwater flow model MODFLOW and was built on the framework of the USGS Central Valley Hydrologic Model (CVHM) within which the SJRRPGW model domain is embedded. The Farm Process (FMP2) was used to simulate the supply and demand components of irrigated agriculture. The Streamflow-Routing Package (SFR2) was used to simulate the streams and bypasses and their interaction with the aquifer system. The 1,300-square mile study area was subdivided into 0.25-mile by 0.25-mile cells. The sediment texture of the aquifer system, which was used to distribute hydraulic properties by model cell, was refined from that used in the CVHM to better represent the natural heterogeneity of aquifer-system materials within the model domain. In addition, the stream properties were updated from the CVHM to better simulate stream-aquifer interactions, and water-budget subregions were refined to better simulate agricultural water supply and demand. External boundary conditions were derived from the CVHM. The SJRRPGW was calibrated for April 1961 to September 2003 by using groundwater-level observations from 133 wells and streamflow observations from 19 streamgages. The model was calibrated using public-domain parameter estimation software (PEST) in a semi-automated manner. The simulated groundwater-level elevations and trends (including seasonal fluctuations) and surface-water flow magnitudes and trends reasonably matched observed data. The calibrated model is planned to be used to assess the potential effects of restoration flows on agricultural lands and the relative capabilities of proposed SJRRP actions to reduce these effects.

California↗
USGS2000

Water-quality assessment of the Sacramento River Basin, California — Water quality of fixed sites, 1996-1998

Water-quality samples were collected from 12 sites in the Sacramento River Basin, Cali-fornia, from February 1996 through April 1998. Field measurements (dissolved oxygen, pH, specific conductance, alkalinity, and water tem-perature) were completed on all samples, and laboratory analyses were done for suspended sediments, nutrients, dissolved and particulate organic carbon, major ions, trace elements, and mercury species. Samples were collected at four types of locations on the Sacramento River?large tributaries to the Sacramento River, agricul-tural drainage canals, an urban stream, and a flood control channel. The samples were collected across a range of flow conditions representative of those sites during the timeframe of the study. The water samples from the Sacramento River indi-cate that specific conductance increases slightly downstream but that the water quality is indicative of dilute water. Water temperature of the Sacramento River increases below Shasta Lake during the spring and summer irrigation season owing to diversion of water out of the river and subsequent lower flow. All 12 sites had generally low concentrations of nutrients, but chlorophyll concentrations were not measured; therefore, the actual consequences of nutrient loading could not be adequately assessed. Concentrations of dis-solved organic carbon in samples from the Sacramento River and the major tributaries were generally low; the formation of trihalomethanes probably does not currently pose a problem when water from the Sacramento River and its major tributaries is chlorinated for drinking-water purposes. However, dissolved organic carbon concentrations were higher in the urban stream and in agricultural drainage canals, but were diluted upon mixing with the Sacramento River. The only trace element that currently poses a water-quality problem in the Sacramento River is mercury. A federal criterion for the protection of aquatic life was exceeded during this study, and floodwater concentrations of mercury were mostly higher than the criterion. Exceedances of water-quality standards happened most frequently during winter when suspended-sediment concen-trations also were elevated. Most mercury is found in association with suspended sediment. The greatest loading or transport of mercury out of the Sacramento River Basin to the San Francisco Bay occurs in the winter and principally follows storm events.

California↗
USGS2000

Fish communities and their associations with environmental variables, lower San Joaquin River drainage, California

Twenty sites in the lower San Joaquin River drainage, California, were sampled from 1993 to 1995 to characterize fish communities and their associations with measures of water quality and habitat quality. The feasibility of developing an Index of Biotic Integrity was assessed by evaluating four fish community metrics, including percentages of native fish, omnivorous fish, fish intolerant of environmental degradation, and fish with external anomalies. Of the thirty-one taxa of fish captured during the study, only 10 taxa were native to the drainage. Multivariate analyses of percentage data identified four site groups characterized by different groups of species. The distributions of fish species were related to specific conductance, gradient, and mean depth; however, specific conductance acted as a surrogate variable for a large group of correlated variables. Two of the fish community metrics - percentage of introduced fish and percentage of intolerant fish - appeared to be responsive to environmental quality but the responses of the other two metrics - percentage of omnivorous fish and percentage of fish with anomalies - were less direct. The conclusion of the study is that fish communities are responsive to environmental conditions, including conditions associated with human-caused disturbances, particularly agriculture and water development. The results suggest that changes in water management and water quality could result in changes in species distributions. Balancing the costs and benefits of such changes poses a considerable challenge to resource managers.

Environmental Biology of Fishes↗