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USGS2015

Estimating concentrations of fine-grained and total suspended sediment from close-range remote sensing imagery

Fluvial sediment, a vital surface water resource, is hazardous in excess. Suspended sediment, the most prevalent source of impairment of river systems, can adversely affect flood control, navigation, fisheries and aquatic ecosystems, recreation, and water supply (e.g., Rasmussen et al., 2009; Qu, 2014). Monitoring programs typically focus on suspended-sediment concentration (SSC) and discharge (SSQ). These time-series data are used to study changes to basin hydrology, geomorphology, and ecology caused by disturbances. The U.S. Geological Survey (USGS) has traditionally used physical sediment sample-based methods (Edwards and Glysson, 1999; Nolan et al., 2005; Gray et al., 2008) to compute SSC and SSQ from continuous streamflow data using a sediment transport-curve (e.g., Walling, 1977) or hydrologic interpretation (Porterfield, 1972). Accuracy of these data is typically constrained by the resources required to collect and analyze intermittent physical samples. Quantifying SSC using continuous instream turbidity is rapidly becoming common practice among sediment monitoring programs. Estimations of SSC and SSQ are modeled from linear regression analysis of concurrent turbidity and physical samples. Sediment-surrogate technologies such as turbidity promise near real-time information, increased accuracy, and reduced cost compared to traditional physical sample-based methods (Walling, 1977; Uhrich and Bragg, 2003; Gray and Gartner, 2009; Rasmussen et al., 2009; Landers et al., 2012; Landers and Sturm, 2013; Uhrich et al., 2014). Statistical comparisons among SSQ computation methods show that turbidity-SSC regression models can have much less uncertainty than streamflow-based sediment transport-curves or hydrologic interpretation (Walling, 1977; Lewis, 1996; Glysson et al., 2001; Lee et al., 2008). However, computation of SSC and SSQ records from continuous instream turbidity data is not without challenges; some of these include environmental fouling, calibration, and data range among sensors. Of greatest interest to many programs is a hysteresis in the relationship between turbidity and SSC, attributed to temporal variation of particle size distribution (Landers and Sturm, 2013; Uhrich et al., 2014). This phenomenon causes increased uncertainty in regression-estimated values of SSC, due to changes in nephelometric reflectance off the varying grain sizes in suspension (Uhrich et al., 2014). Here, we assess the feasibility and application of close-range remote sensing to quantify SSC and particle size distribution of a disturbed, and highly-turbid, river system. We use a consumer-grade digital camera to acquire imagery of the river surface and a depth-integrating sampler to collect concurrent suspended-sediment samples. We then develop two empirical linear regression models to relate image spectral information to concentrations of fine sediment (clay to silt) and total suspended sediment. Before presenting our regression model development, we briefly summarize each data-acquisition method.

Conference Paper↗

USGS2020

Genetic diversity, population structure, and historical demography of a highly vagile and human‐impacted seabird in the Pacific Ocean: The red‐tailed tropicbird, Phaethon rubricauda

Many seabird breeding colonies have recovered from heavy anthropogenic disturbance after conservation actions. The widely distributed red‐tailed tropicbird, Phaethon rubricauda , was used as a model species to assess potential anthropogenic impacts on the genetic diversity of breeding colonies in the Pacific Ocean. Cytochrome c oxidase subunit I and control region sequences analyses were conducted across the range of the species in the Pacific Ocean. The study sites were at islands without human‐related disturbance (non‐impacted islands) and with human‐related disturbance (impacted islands). We hypothesized that (i) breeding colonies of the red‐tailed tropicbird on impacted islands have lower genetic diversity compared with colonies on non‐impacted islands, and (ii) breeding colonies of the red‐tailed tropicbird show significant fine and broad‐scale genetic structure across the Pacific Ocean. Bayesian skyline analyses were conducted to infer past changes in population sizes. Genetic diversity was similar between impacted and non‐impacted islands. There was significant broad‐scale genetic structure among colonies separated by over 6,000 km, but a lack of significant fine‐scale genetic structure within Australasia and Hawai'i, although a significant level of differentiation was found within Chile with Φ ST analyses. Skyline analyses showed that effective population sizes remained relatively constant through time, but experienced either a slight decrease or the end of an expansion event through the last 1,000 years. These changes may be related to the arrival of humans on Pacific islands. Impacted islands may have received immigrants from other relatively close islands, buffering the loss of genetic diversity. However, it is also possible that colonies have retained ancestral variation or that a large effective population size coupled with a long generation time (13 years) has prevented the loss of genetic diversity in human‐impacted islands. Future research using higher‐resolution markers is needed to resolve the population genetic structure of the red‐tailed tropicbird in an ecological time‐scale.

Hawaii↗

USGS2019

Floodplains provide important amphibian habitat despite multiple ecological threats

Floodplain ponds and wetlands are productive and biodiverse ecosystems, yet they face multiple threats including altered hydrology, land use change, and non‐native species. Protecting and restoring important floodplain ecosystems requires understanding how organisms use these habitats and respond to altered environmental conditions. We developed Bayesian models to evaluate occupancy of six amphibian species across 103 off‐channel aquatic habitats in the Chehalis River floodplain, Washington State, USA. The basin has been altered by changes in land use, reduced river–wetland connections, and the establishment of non‐native American bullfrogs ( Rana catesbeiana = Lithobates catesbeianus ) and centrarchid fishes, all of which we hypothesized could influence native amphibian occupancy. Despite potential threats, the floodplain habitats had relatively high rates of native amphibian occupancy, particularly when compared to studies from non‐floodplain habitats within the species’ native ranges. The biggest challenge for native amphibians appears to be non‐native centrarchid fishes, which strongly reduced occupancy of two native amphibians: the northern red‐legged frog ( Rana aurora ) and the northwestern salamander ( Ambystoma gracile ). Emergent vegetative cover increased occupancy probability for all five native amphibian species, indicating that plant management may offer a strategy to counter the negative effect of centrarchids by providing refuge from predation. We found that temporary and permanent hydroperiod sites supported different species; hence, both should be conserved on the landscape. Lastly, human‐created and natural ponds had similar amphibian occupancy patterns, suggesting that pond construction offers a viable strategy for adding habitats to the floodplain landscape. Overall, floodplain ponds and wetlands provide important amphibian habitat, and we offer management strategies that will bolster amphibian occupancy in an altered floodplain landscape.

Washington↗

USGS2018

The confluences of ideas leading to, and the flow of ideas emerging from, individual-based modeling of riverine fishes

In this review article, we trace the history of events leading to the development of individual-based models (IBMs) to represent aquatic organisms in rivers and streams. As a metaphor, we present this history as a series of confluences between individual scientists (tributaries) sharing ideas. We describe contributions of these models to science and management. One iconic feature of river IBMs is the linkage between flow and the physical habitat experienced by individual animals, and the first model that focused on this linkage is briefly described. We continue by reviewing the contributions of riverine IBMs to eight broad areas of scientific inquiry. The first four areas include research to understand 1) the effects of flow regimes on fish populations, 2) species interactions (e.g., size-mediated competition and predation), 3) fish movement and habitat selection, and 4) contaminant and water quality impacts on populations. Next, we review research using IBMs 5) to guide conservation biology of imperiled taxa through population viability analysis, including research 6) to understand river fragmentation by dams and reconnection, 7) to understand genetic outcomes for riverine metapopulations, and 8) to anticipate the future effects of temperature and climate change. This rich body of literature has contributed to both theoretical insights (e.g., about animal behavior and life history) and applied insights (e.g., population-level effects of flow regimes, temperature, and the effects of hydropower and other industries that share rivers with aquatic biota). We finish by exploring promising branches that lie ahead in the braided, downstream channel that represents future river modeling research.

Ecological Modelling↗

USGS2004

Differential propagation of the metazoan parasite Myxobolus cerebralis by Limnodrilus hoffmeisteri, Ilyodrilus templetoni, and genetically distinct strains of Tubifex tubifex

Whirling disease, caused by the parasite Myxobolus cerebralis, has infected rainbow trout (Oncorhynchus mykiss) and other salmonid fish in the western United States, often with devastating results to native populations but without a discernible spatial pattern. The parasite develops in a complex 2-host system in which the aquatic oligochaete Tubifex tubifex is an obligate host. Because substantial differences in whirling disease severity in different areas of North America did not seem explainable by environmental factors or features of the parasite or its fish host, we sought to determine whether ecological or genetic variation within oligochaete host populations may be responsible. We found large differences in compatibility between the parasite and various laboratory strains of T. tubifex that were established from geographic regions with different whirling disease histories. Moreover, 2 closely related species of tubificids, Limnodrilus hqffmeisteri and Ilyodrilus templetoni, which occur naturally in mixed species assemblages with T. tubifex, were incompatible with M. cerebralis. Virulence of the parasite was directly correlated with the numbers of triactinomyxon spores that developed within each strain of T. tubifex. Thus, the level of virulence was directly related to the compatibility between the host strain and the parasite. Genetic analyses revealed relationships that were in agreement with the level of parasite production. Differences in compatibilities between oligochaetes and M. cerebralis may contribute to the spatial variance in the severity of the disease among salmonid populations. ?? American Society of Parasitologists 2004.

Journal of Parasitology↗

USGS2020

Magnitude and direction of stream–forest community interactions change with timescale

Networks of direct and indirect biotic interactions underpin the complex dynamics and stability of ecological systems, yet experimental and theoretical studies often yield conflicting evidence regarding the direction (positive or negative) or magnitude of these interactions. We revisited pioneering data sets collected at the deciduous forested Horonai Stream and conducted ecosystem‐level syntheses to demonstrate that the direction of direct and indirect interactions can change depending on the timescale of observation. Prior experimental studies showed that terrestrial prey that enter the stream from the adjacent forest caused positive indirect effects on aquatic invertebrates during summer by diverting fish consumption. Seasonal and annual estimates of secondary production and organic matter flows along food web pathways demonstrate that this seasonal input of terrestrial invertebrate prey increases production of certain fish species, reversing the indirect effect on aquatic invertebrates from positive at the seasonal timescale to negative at the annual timescale. Even though terrestrial invertebrate prey contributed 54% of the annual organic matter flux to fishes, primarily during summer, fish still consumed 98% of the aquatic invertebrate annual production, leading to top‐down control that is not revealed in short‐term experiments and demonstrating that aquatic prey may be a limiting resource for fishes. Changes in the direction or magnitude of interactions may be a key factor creating nonlinear or stabilizing feedbacks in complex systems, and these dynamics can be revealed by merging experimental and comparative approaches at different scales.

Ecology↗

USGS2016

Invasive European bird cherry disrupts stream-riparian linkages: effects on terrestrial invertebrate prey subsidies for juvenile coho salmon

The spread of invasive species in riparian forests has the potential to affect both terrestrial and aquatic organisms linked through cross-ecosystem resource subsidies. However, this potential had not been explored in regards to terrestrial prey subsidies for stream fishes. To address this, we examined the effects of an invasive riparian tree, European bird cherry (EBC, Prunus padus ), spreading along urban Alaskan salmon streams, by collecting terrestrial invertebrates present on the foliage of riparian trees, their subsidies to streams, and their consumption by juvenile coho salmon ( Oncorhynchus kisutch ). Riparian EBC supported four to six times less terrestrial invertebrate biomass on its foliage and contributed two to three times lower subsidies relative to native deciduous trees. This reduction in terrestrial invertebrate biomass was consistent between two watersheds over 2 years. In spite of this reduction in terrestrial prey resource input, juvenile coho salmon consumed similar levels of terrestrial invertebrates in stream reaches bordered by EBC. Although we did not see ecological effects extending to stream salmonids, reduced terrestrial prey subsidies to streams are likely to have negative consequences as EBC continues to spread.

Canadian Journal of Fisheries and Aquatic Sciences↗

USGS2024

A model for evaluation of sediment exposure and burial for freshwater mussels from heavy particle sedimentation

Freshwater mussels (Bivalvia: Unionida) are an ecologically important faunal group. Excessive sediments, both in suspended and deposited formats, are believed to have negative effects on survival of freshwater mussels. However, there is a lack of quantitative tools for assessing the impact of abrupt and excessive sedimentation on freshwater mussel habitats. This gap in knowledge poses challenges for construction planning that necessitates evaluating sedimentation effects on mussels. In this paper, we present a simple Lagrangian particle tracking (LPT) model designed to investigate the downstream distances from the sediment release point where mussels may face risks of sediment exposure and burial during episodic sedimentation events. We validated the model in predicting the deposition of sands ranging from 125 to 625 μ m "> 625μm in diameter within an open channel. Subsequently, we applied the LPT model to a representative stretch of mussel habitats in the lower Osage River, Missouri, USA. Implementing the LPT model using computational fluid dynamics analysis of river hydrodynamics, we investigated the downstream distances impacted by a hypothetical sedimentation event. The results indicate that the mussels within tens and hundreds of meters may be at risk of burial under low and high flow conditions, respectively. Mussels within hundreds and potentially thousands of meters may be at risks of sediment exposure under low and high flow conditions, respectively. The impacted distance is highly dependent on the sediment diameters and flow conditions. These results contribute valuable insights into the potential impacts of sedimentation on freshwater mussel habitats, aiding in informed decision-making for construction projects near these critical aquatic ecosystems.

Ecological Modelling↗

USGS2010

Determination of biologically significant hydrologic condition metrics in urbanizing watersheds: an empirical analysis over a range of environmental settings

We investigated the relations among 83 hydrologic condition metrics (HCMs) and changes in algal, invertebrate, and fish communities in five metropolitan areas across the continental United States. We used a statistical approach that employed Spearman correlation and regression tree analysis to identify five HCMs that are strongly associated with observed biological variation along a gradient of urbanization. The HCMs related to average flow magnitude, high-flow magnitude, high-flow event frequency, high-flow duration, and rate of change of stream cross-sectional area were most consistently associated with changes in aquatic communities. Although our investigation used an urban gradient design with short hydrologic periods of record (≤1 year) of hourly cross-sectional area time series, these five HCMs were consistent with previous investigations using long-term daily-flow records. The ecological sampling day often was included in the hydrologic period. Regression tree models explained up to 73, 92, and 79% of variance for specific algal, invertebrate, and fish community metrics, respectively. National models generally were not as statistically significant as models for individual metropolitan areas. High-flow event frequency, a hydrologic metric found to be transferable across stream type and useful for classifying habitat by previous research, was found to be the most ecologically relevant HCM; transformation by precipitation increased national-scale applicability. We also investigated the relation between measures of stream flashiness and land-cover indicators of urbanization and found that land-cover characteristic and pattern variables, such as road density, percent wetland, and proximity of developed land, were strongly related to HCMs at both a metropolitan and national scale and, therefore, may be effective land-use management options in addition to wholesale impervious-area reduction.

Milwaukee-Green Bay; Boston; Raleigh; Atlanta; Bir↗

USGS2025

Using angler-submitted records to interpret the spatial seasonality of a large predator (Black bass, Micropterus spp.)

In addition to having cultural, social, and economic significance, large predatory fish affect aquatic communities from the top down and serve as markers of ecosystem health. A focus on large predators is critical for managing ecosystems, conserving species, and guaranteeing the sustainability of aquatic resources. Recreational fishing is inherently biased towards large fish, and anglers possess the strength in numbers and geographical dispersion that enable them to sample the upper tiers of size distributions rarely encountered in standard fish surveys. We sought to further understand the ecological requirements and spatial seasonality of exceptionally sized black bass ( Micropterus spp.) via angler catches. Black bass > 3.6 kg were examined across 147 reservoirs in Texas, USA, with 2817 fish recorded by anglers into an online database in 2018–2024. Most fish were caught in late-winter and early-spring in line with spawning activities that included movements in-and-out of shallow water, nest building, and nest defense. Approximately 54 % of fish were caught with bottom-oriented fishing lures and techniques, and 40 % midwater; surface catches were less common. The efficacy of angling techniques varied seasonally. Those effective in winter were midwater, while those effective in summer were bottom or surface. Conversely, a combination of bottom and midwater techniques were effective in the fall and spring, suggesting cyclic habitat transitions. Moreover, the frequency with which fish were caught over various macrohabitats varied seasonally and cyclically. Our findings have the potential to inform habitat management that supports large predators and their migratory relocations. Our findings also underscore the value of using anglers and technology as sources of difficult-to-obtain fish and environmental data that may evade regular monitoring.

Texas↗

USGS2003

Predicting changes in hydrologic retention in an evolving semi-arid alluvial stream

Hydrologic retention of solutes in hyporheic zones or other slowly moving waters of natural channels is thought to be a significant control on biogeochemical cycling and ecology of streams. To learn more about factors affecting hydrologic retention, we repeated stream-tracer injections for 5 years in a semi-arid alluvial stream (Pinal Creek, Ariz.) during a period when streamflow was decreasing, channel width increasing, and coverage of aquatic macrophytes expanding. Average stream velocity at Pinal Creek decreased from 0.8 to 0.2 m/s, average stream depth decreased from 0.09 to 0.04 m, and average channel width expanded from 3 to 13 m. Modeling of tracer experiments indicated that the hydrologic retention factor ( R h ), a measure of the average time that solute spends in storage per unit length of downstream transport, increased from 0.02 to 8 s/m. At the same time the ratio of cross-sectional area of storage zones to main channel cross-sectional area ( A s / A ) increased from 0.2 to 0.8 m 2 /m 2 , and average water residence time in storage zones ( t s ) increased from 5 to 24 min. Compared with published data from four other streams in the US, Pinal Creek experienced the greatest change in hydrologic retention for a given change in streamflow. The other streams differed from Pinal Creek in that they experienced a change in streamflow between tracer experiments without substantial geomorphic or vegetative adjustments. As a result, a regression of hydrologic retention on streamflow developed for the other streams underpredicted the measured increases in hydrologic retention at Pinal Creek. The increase in hydrologic retention at Pinal Creek was more accurately predicted when measurements of the Darcy–Weisbach friction factor were used (either alone or in addition to streamflow) as a predictor variable. We conclude that relatively simple measurements of channel friction are useful for predicting the response of hydrologic retention in streams to major adjustments in channel morphology as well as changes in streamflow.

Advances in Water Resources↗

USGS2004

Relationships between bald eagle productivity and dynamics of fish populations and fisheries in the Wisconsin waters of Lake Superior, 1983-1999

Bald eagle ( Haliaeetus leucocephalus ) abundance declined in the 1950s and 1960s along the Wisconsin waters of Lake Superior, and were nearly absent along Wisconsin's Lake Superior shoreline. The population began to increase again between 1980 and 1983, and since then bald eagles nesting on islands along Wisconsin's Lake Superior shoreline (i.e., Apostle Islands ) reproduced at a lower rate than have those nesting along the mainland shoreline of the lake and inland. Recent research indicated that bioaccumulation of toxic chemicals in the aquatic food chain no longer limits bald eagle reproduction there, and that productivity at island nests was lower than at mainland nests and inland nests as the result of low food availability. Management agencies have sought models that accurately predict productivity and explain ecological relationships, but no satisfactory models had previously been developed. Modeling was conducted here to determine which factors best explained productivity variability. The Ricker stock-recruitment model derived from only the bivariate breeding pair and productivity data explained only 1% of the variability in productivity data. The functional relationship that explained the greatest amount of productivity variation (83%) included the number of breeding pairs, burbot ( Lota lota ) biomass, longnose sucker ( Catostomus catostomus ) biomass, and commercial harvest of nontarget fishes. Model results were interpreted to mean that productivity was positively affected by populations of burbot and longnose sucker, which are important prey items, and by commercial fishermen feeding nontarget fish to bald eagles. Harvest of nontarget fishes by tribal fishermen and burbot and longnose sucker populations have not tended to change during the entire study period, although the burbot population has declined since 1991. Therefore, bald eagle productivity is not predicted to increase unless burbot, longnose sucker, or other preferred prey of bald eagles increases in the Apostle Islands.

Wisconsin↗

USGS2012

Wildlife and biological resources: Chapter 5 in A synthesis of aquatic science for management of Lakes Mead and Mohave

The creation of Lakes Mead and Mohave drastically changed habitats originally found along their region of the historical Colorado River. While still continuing to provide habitat conditions that support a rich diversity of species within the water, along shorelines, and in adjacent drainage areas, the reservoirs contain organisms that are both native and non-native to the Colorado River drainage (fig. 5-1). The diversity of species within these lakes continues to change with time due to changing habitat conditions, the invasion of non-native species, and extirpations of native species. From the bottom of the food web to the top predators, all organisms within the ecosystem are interconnected in food webs or food-chain networks. As non-native invasive species continue to be introduced into the lakes, alterations to the food web, species competition, and species predation likely will continue to change the ecosystem and populations of native organisms. Following an overview of the food web, this chapter summarizes information on aquatic and aquatic-dependent wildlife at Lakes Mead and Mohave and their relationships within the food web from members of lower trophic levels to the highest: phytoplankton, invertebrates, including zooplankton, and macroinvertebrates; fishes; and birds. The following sections describe the biological diversity, limiting factors, and ecological functions of these groups in Lake Mead, and to a lesser extent, in Lake Mohave.

Circular↗

USGS2020

Assessment of Ambystomatid salamander populations and their breeding habitats in the Delaware Water Gap National Recreation Area

This report presents abundance and occurrence data for three species of ambystomad salamanders ( Ambystoma maculatum, A. jeffersonianum, and A. opacum ) collected over a 3-year period (2000, 2001, and 2002) at 200 potentional breeding sies within the Delaware Water Gap National Recreation Area (DEWA). In addition, numerous measures of inpond, near-pond, and landscape attributes were measured and used to inform statistical models to determine species-habitat relationships in the DEWA. The results of a 3-year study of ambystomatid salamander breeding habits and habitats in the (DEWA) that was conducted by the U.S. Geological Survey, in cooperation with the National Park Service, are described in the report. The objectives of the study were to document the population status and critical breeding habitats of the three species of ambystomatid salamanders known to be present in the DEWA— Ambystoma maculatum (spotted salamander), A. opacum (marbled salamander), and A. jeffersonianum (Jefferson salamander). DEWA managers are interested in ecological information on these species for several reasons. First, at the time the study began, there was little known regarding the status of pond-breeding amphibians and their habitats in the DEWA. Second, because they require undegraded habitats in both terrestrial and aquatic habitats to successfully complete their life cycles, the status of ambystomatid salamanders is widely viewed as indicative of overall ecosystem health. Third, because ambystomatid salamanders and other pond-breeding amphibians have been observed in numerous artificial impoundments with the DEWA, park managers would like to assess whether dismantling or discontinuing maintenance of artificial impoundments could affect pond-breeding amphibians and possibly other species that use pond or wetland habitats in the Park. In 2001, 2002, and 2003, the size and location of 200 wetlands, ponds, and artificial impoundments, and related landscape positions (Ridge versus Valley; Pennsylvania side versus New Jersey side of the Delaware river) were mapped, and site habitat data relating to salamander occurrence and abundance patterns were collected. The data collected during this study provide important new baseline information on ambystomatid salamanders and wetland habitats in the DEWA that will enhance long-term inventory and monitoring efforts. In addition, breeding habitat assessments indicate that ambystomatid salamanders may be sensitive to a wide variety of stresses important in the DEWA and in the region. In particular, recent trends in development (for example, roads) in and near the DEWA, regional increases in the acidity of precipitation, and predicted long-term warming trends for the region could be detrimental to pond-breeding salamander populations because of their effects on breeding site quality and quantity, and on the integrity of migration corridors. In contrast, the results of the study indicate management plans to eliminate small impoundments are not likely to adversely affect salamanders in DEWA, at least in the short-term. However, it is possible that these small impoundments may offer stable habitats that provide a rescure effect during long-term droughts.

New Jersey, Pennsylvania↗

USGS2002

Ecological effects on streams from forest fertilization: Literature review and conceptual framework for future study in the western Cascades

Fertilization of forests with urea-nitrogen has been studied numerous times for its effects on water quality. Stream nitrogen concentrations following fertilization are typically elevated during winter, including peaks in the tens-of-thousands of parts per billion range, with summer concentrations often returning to background or near-background levels. Despite these increases, water-quality criteria for nitrogen have rarely been exceeded. However, such criteria are targeted at fish toxicity or human health and are not relevant to concentrations that could cause ecological disturbances. Studies of the responses of stream biota to fertilization have been rare and have targeted either immediate, toxicity-based responses or used methods insensitive to ongoing ecological processes. This report reviews water-quality studies following forest fertilizations, emphasizing Cascade streams in the Pacific Northwest and documented biological responses in those streams. A conceptual model predicting potential ecological response to fertilization, which includes effects on algal growth and primary production, is presented. In this model, applied fertilizer nitrogen reaching streams is mostly exported during winter. However, some nitrogen retained in soils or stream and riparian areas may become available to aquatic biota during spring and summer. Biological responses may be minimal in small streams nearest to application because of light limitation, but may be elevated downstream where light is sufficient to allow algal growth. Ultimately, algal response could be greatest in downstream reaches, although ambient nutrient concentrations remain low due to uptake and benthic nutrient recycling. Ground-water flow paths and hyporheic processing could be critical in determining the fate of applied nitrogen. A framework is provided for testing this response in the Little River watershed, a tributary to the North Umpqua River, Oregon, at basic and intensive levels of investigation.

Oregon↗

USGS2012

The occurrence of trace elements in bed sediment collected from areas of varying land use and potential effects on stream macroinvertebrates in the conterminous western United States, Alaska, and Hawaii, 1992-2000

As part of the National Water-Quality Assessment Program of the U.S. Geological Survey, this study examines the occurrence of nine trace elements in bed sediment of varying mineralogy and land use and assesses the possible effects of these trace elements on aquatic-macroinvertebrate community structure. Samples of bed sediment and macroinvertebrates were collected from 154 streams at sites representative of undeveloped, agricultural, urban, mined, or mixed land-use areas and 12 intermediate-scale ecoregions within the conterminous western United States, Alaska, and Hawaii from 1992 to 2000. The nine trace elements evaluated during this study—arsenic (As), cadmium (Cd), chromium (Cr), copper (Cu), lead (Pb), mercury (Hg), nickel (Ni), selenium (Se), and zinc (Zn)—were selected on the basis of potential ecologic significance and availability of sediment-quality guidelines. At most sites, the occurrence of these trace elements in bed sediment was at concentrations consistent with natural geochemical abundance, and the lowest concentrations were in bed-sediment samples collected from streams in undeveloped and agricultural areas. With the exception of Zn at sampling sites influenced by historic mining-related activities, median concentrations of all nine trace elements in bed sediment collected from sites representative of the five general land-use areas were below concentrations predicted to be harmful to aquatic macroinvertebrates. The highest concentrations of As, Cd, Pb, and Zn were in bed sediment collected from mined areas. Median concentrations of Cu and Ni in bed sediment were similarly enriched in areas of mining, urban, and mixed land use. Concentrations of Cr and Ni appear to originate largely from geologic sources, especially in the western coastal states (California, Oregon, and Washington), Alaska, and Hawaii. In these areas, naturally high concentrations of Cr and Ni can exceed concentrations that may adversely affect aquatic macroinvertebrates. Generally, Hg concentrations were below the sediment-quality guideline for this trace element but appeared elevated in urbanized areas and at sites contaminated by historic mining practices. Lastly, although there was no distinctive pattern in Se concentrations with land use, median bed-sediment concentrations were slightly elevated in urbanized areas. Macroinvertebrate community structure was influenced by topographic, geologic, climatic, and in-stream characteristics. To account for inherent distribution patterns resulting from these influences, samples of macroinvertebrates were stratified by ecoregion to assess the influence of trace elements on community structure. Cumulative toxic units (CTUs) were used to evaluate gradients in trace-element concentrations in mixture. Correlation analyses among the trace elements under different land-use conditions indicate that trace-element mixtures vary among bed sediment and can have a marked influence on CTU composition. Macroinvertebrate response to bed-sediment trace-element exposure was evident only at the most highly contaminated sites, notably at sites classified as contaminated by the Comprehensive Environmental Response, Compensation, and Liability Act (CERCLA) as a result of historic mining activities. Results of this study agree with the findings of other studies evaluating trace-element exposure to in-stream macroinvertebrate community structure in that generally lower richness metrics and taxa dominance occur in streams where high trace-element enrichment occurs; however, not all streams in all areas have the same characterizing taxa. In the mountain and xeric ecosystems, the mayfly, Baetis sp.; the Diptera, Simulium sp.; caddisflies in the family Hydropsychiidae; midges in the family Orthocladiinae; and the worms belonging to Turbellaria and Naididae all demonstrated resilience to trace-element exposure and, in some cases, possible changes in physical habitat within stream ecosystems. The taxa characteristics within the Ozark Highland ecoregion were different than other ecoregions as evidenced by generally more diverse mayfly populations. In addition, Baetis sp. was common and dominated many of the mayfly populations found in the Rocky Mountain streams within the Mountain Southern Rockies and Mountain Northern Rockies ecoregions; however, within the Ozark Highland ecoregion, Tricorythodes sp. appeared to be more common than Baetis sp.

Alaska, Arizona, California, Colorado, Hawai'i, Id↗

USGS2010

Faunal assemblages and multi-scale habitat patterns in headwater tributaries of the South Fork Trinity River - an unregulated river embedded within a multiple-use landscape

Headwaters can represent 80% of stream kilometers in a watershed, and they also have unique physical and biological properties that have only recently been recognized for their importance in sustaining healthy functioning stream networks and their ecological services. We sampled 60 headwater tributaries in the South Fork Trinity River, a 2,430 km2, mostly forested, multiple-use watershed in northwestern California. Our objectives were: (1) to differentiate unique headwater types using 69 abiotic and vegetation variables measured at three spatial scales, and then to reduce these to informative subsets; (2) determine if distinct biota occupied the different tributary types; (3) determine the environmental attributes associated with the presence and abundance of these biotic assemblages; and (4) using niche modeling, determine key attribute thresholds to illustrate how these biota could be employed as metrics of system integrity and ecological services. Several taxa were sufficiently abundant and widespread to use as bio-indicators: the presence and abundance of steelhead trout (Oncorhynchus mykiss), herpetofauna (reptile and amphibian) species richness, and signal crayfish (Pacifastacus leniusculus) represented different trophic positions, value as commercial resources (steelhead), sensitivity to environmental stress (amphibians), and indicators of biodiversity (herpetofauna species richness). Herpetofauna species richness did not differ, but abundances of steelhead trout, signal crayfish, and amphibian richness all differed significantly among tributary types. Niche models indicated that distribution and abundance patterns in both riparian and aquatic environments were associated with physical and structural attributes at multiple spatial scales, both within and around reaches. The bio-indicators responded to unique sets of attributes, reflecting the high environmental heterogeneity in headwater tributaries across this large watershed. These niche attributes represented a wide range of headwater environments, indicating responses to a number of natural and anthropogenic conditions, and demonstrated the value of using a suite of bio-indicators to elucidate watershed conditions, and to examine numerous disturbances that may influence ecological integrity.

Animal Biodiversity and Conservation↗

USGS2006

Ontogenetic dynamics of mercury accumulation in Northwest Atlantic sea lamprey (Petromyzon marinus)

We examined the ontogenetic dynamics of mercury accumulation in sea lamprey (Petromyzon marinus) from the Connecticut River, USA. Mercury concentrations in eggs (mean 84 ng??g-1 wet weight) were lowest of all life stages and correlated to concentrations in females. There was a higher rate of maternal transfer of mercury to eggs compared with teleosts. Ammocoetes had high mercury concentrations for their trophic level (e.g., mean of age-4 ammocoetes 492 ng??g-1 wet weight). A further investigation of four streams showed that ammocoetes reflected the level of contamination in their nursery streams. Concentrations of mercury decreased during metamorphosis from ammocoete to adult. Mercury concentrations in adults ranged from 83 to 942 ng??g-1 wet weight and, unlike teleosts, showed no relation to sex, length, or weight. We provide evidence from stable isotope analyses that this high variability is due to feeding ecology. There are fundamental differences in mercury accumulation between sea lamprey and teleosts. ?? 2006 NRC Canada.

Canadian Journal of Fisheries and Aquatic Sciences↗