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At least 631 records · Page 35Linked to original sources
USGS2018

Calibrated peer review assignments for the earth sciences

Calibrated Peer Review ™ (CPR), a web-based instructional tool developed as part of the National Science Foundation reform initiatives in undergraduate science education, allows instructors to incorporate multiple writing assignments in large courses without overwhelming the instructor. This study reports successful implementation of CPR in a large, introductory geology course and student learning of geoscience content. For each CPR assignment in this study, students studied web-based and paper resources, wrote an essay, and reviewed seven essays (three from the instructor, three from peers, and their own) on the topic. Although many students expressed negative attitudes and concerns, particularly about the peer review process of this innovative instructional approach, they also recognized the learning potential of completing CPR assignments. Comparing instruction on earthquakes and plate boundaries using a CPR assignment vs. an instructional video lecture and homework essay with extensive instructor feedback, students mastered more content via CPR instruction.

Journal of Geoscience Education↗
USGS2000

Proposal and work plan to calibrate and verify a water-quality model to simulate effects of wastewater discharges to the Red River of the North at drought streamflow near Fargo, North Dakota, and Moorhead, Minnesota

This report presents a proposal for conducting a water-quality modeling study at drought streamflow, a detailed comprehensive plan for collecting the data, and an annual drought-formation monitoring plan. A 30.8 mile reach of the Red River of the North receives treated wastewater from plants at Fargo, North Dakota, and Moorhead, Minnesota, and streamflow from the Sheyenne River. The water-quality modeling study will evaluate the effects of continuous treated-wastewater discharges to the study reach at drought streamflow. The study will define hydraulic characteristics and reaeration and selected reaction coefficients and will calibrate and verity a model. The study includes collecting synoptic water-quality samples for various types of analyses at a number of sites in the study reach. Dye and gas samples will be collected for traveltime and reaeration measurements. Using the Lagrangian reference frame, synoptic water-quality samples will be collected for analysis of nutrients, chlorophyll a, alkalinity, and carbonaceous biochemical oxygen demand. Field measurements will be made of specific conductance, pH, air and water temperature, dissolved oxygen, and sediment oxygen demand. Two sets of water-quality data will be collected. One data set will be used to calibrate the model, and the other data set will be used to verity the model. The DAFLOW/BLTM models will be used to evaluate the effects of the treated wastewater on the water quality of the river. The model will simulate specific conductance, temperature, dissolved oxygen, carbonaceous biochemical oxygen demand, total nitrogen (organic, ammonia, nitrite, nitrate), total orthophosphorus, total phosphorus, and phytoplankton as chlorophyll a. The work plan identifies and discusses the work elements needed for accomplishing the data collection for the study. The work elements specify who will provide personnel, vehicles, instruments, and supplies needed during data collection. The work plan contains instructions for data collection; inventory lists of needed personnel, vehicles, instruments, and supplies; and examples of computations for determining quantities of tracer to be injected into the stream. The work plan also contains an annual drought-formation monitoring plan that includes a 9-month time line that specifies when essential planning actions must occur before actual project start up. Drought streamflows are rare. The annual drought-formation monitoring plan is presented to assist project planning by providing early warning that conditions are favorable to produce drought streamflow. The plan to monitor drought-forming conditions discusses the drought indices to be monitored. To establish a baseline, historic values for some of the drought indices for selected years were reviewed. An annual review of the drought indices is recommended.

Open-File Report↗
USGS2004

Formation, evolution, and stability of coastal cliffs: Status and trends

The Ocean Studies Board of the National Research Council recently reviewed the U.S. Geological Survey's Coastal and Marine Geology (USGS-CMG) program. One of the Board's primary recommendations was that CMG prepare comprehensive assessments of the nation's coastal and marine regions, drawing on expertise not only from within the USGS, but also from outside agencies and academic institutions. In response to that recommendation, this report assesses the status and trends of coastal cliffs along the shorelines of the conterminous United States and the Great Lakes. By "status" is meant the present distribution and character of coastal cliffs, as well as their current relevance to social issues such as coastal development. By "trends" is meant the changes in status caused by both geological forces and human activities. Coastal cliffs are steep escarpments at the coastline. They commonly form during times of rising sea level, such as the present, as the shoreline advances landward and erodes the elevated landmass. Coastal cliffs are a common landform, particularly on the west, northeast, and Great Lakes coasts of the United States, as well as within large estuaries. The land adjacent to coastal cliffs has been heavily developed along much of the coast, particularly in urban areas where the natural instability and progressive retreat of the cliffs pose a threat to life and property. Coastal land is permanently lost when coastal cliffs collapse and retreat landward, which is an important national issue in coastal planning, management, and engineering. The content of this report was derived from the personal expertise of the authors and from the extensive scientific literature concerned with coastal cliffs. As a report to the Nation, it is intended for a broad audience. Both topical and regional aspects are presented. It is important to recognize that the emphasis of this report is on the geology of coastal cliffs; engineering, land-use, and regulatory issues are addressed only where there is a clear link to the geologic nature of coastal cliffs. The editors appreciate the thorough and careful review of the entire manuscript by Alan Trenhaile and Laura Moore. Their editing, comments, and questions greatly improved the content and clarity of the final report.

Professional Paper↗
USGS2016

Sagebrush, greater sage-grouse, and the occurrence and importance of forbs

Big sagebrush ( Artemisia tridentata Nutt.) ecosystems provide habitat for sagebrush-obligate wildlife species such as the Greater Sage-Grouse ( Centrocercus urophasianus ). The understory of big sagebrush plant communities is composed of grasses and forbs that are important sources of cover and food for wildlife. The grass component is well described in the literature, but the composition, abundance, and habitat role of forbs in these communities is largely unknown. Our objective was to synthesize information about forbs and their importance to Greater Sage-Grouse diets and habitats, how rangeland management practices affect forbs, and how forbs respond to changes in temperature and precipitation. We also sought to identify research gaps and needs concerning forbs in big sagebrush plant communities. We searched for relevant literature including journal articles and state and federal agency reports. Our results indicated that in the spring and summer, Greater Sage-Grouse diets consist of forbs (particularly species in the Asteraceae family), arthropods, and lesser amounts of sagebrush. The diets transition to sagebrush in fall and winter. Forbs provide cover for Greater Sage-Grouse individuals at their lekking, nesting, and brood-rearing sites, and the species has a positive relationship with arthropod presence. The effect of grazing on native forbs may be compounded by invasion of nonnative species and differs depending on grazing intensity. The effect of fire on forbs varies greatly and may depend on time elapsed since burning. In addition, chemical and mechanical treatments affect annual and perennial forbs differently. Temperature and precipitation influence forb phenology, biomass, and abundance differently among species. Our review identified several uncertainties and research needs about forbs in big sagebrush ecosystems. First, in many cases the literature about forbs is reported only at the genus or functional type level. Second, information about forb composition and abundance near lekking sites is limited, despite the fact that lekking sites are an important center of Greater Sage-Grouse activity. Third, there is little published literature on the relationship between forbs and precipitation and between forbs and temperature, thereby limiting our ability to understand potential responses of forbs to climate change. While there is wide agreement among Greater Sage-Grouse biologists that forbs are an important habitat component, our knowledge about the distribution and environmental responses of forb species in big sagebrush plant communities is limited. Our work for the first time synthesizes the current knowledge regarding forbs in sagebrush ecosystems and their importance for Greater Sage-Grouse and identifies additional research needs for effective conservation and management.

Western North American Naturalist↗
USGS2023

Apparent discrepancies in the review “Avian host range of Chlamydophila spp. based on isolation, antigen detection and serology” by Kaleta, E.F. & Taday, E.M.A. (2003), Avian Pathology, 32, 435–462

Citing published reports and their own diagnostic data, Kaleta and Taday ( Citation 2003 ) ( https://doi.org/10.1080/03079450310001593613 ) reported that 469 domestic and free-living bird species were determined to be chlamydia-positive, based on isolation of the organism and antigen detection or on serological detection of circulating antibodies. However, I was unable to reconcile the designation of chlamydia-positive in some of the species listed by Kaleta and Taday ( Citation 2003 ) with the information provided in the corresponding references cited. For example, Eddie et al . ( Citation 1966 ) tested sera from 24 species of birds in Alaska (see their Table 1 ) by “direct and indirect complement fixation techniques in the presence of the standard psittacosis antigen.” Eddie et al . ( Citation 1966 ) reported that serum samples from only two species reacted, and the authors considered those titres too low to be of diagnostic significance. However, Kaleta and Taday ( Citation 2003 ) listed 20 bird species from Eddie et al . ( Citation 1966 ) as being positive for chlamydia. Additional apparent discrepancies are listed in Table 1 of the current article.

Avian Pathology↗
USGS1951

Conservation: Where we stand: Review of Water, land, and people

A distinguished conservationist, just returned from more than a year in those Pacific islands held in trust by the United States, reports that representatives of the government there are nearly completely concerned with the maintenance of an administrative organization. Actual advances in matters of land use, of maintaining the material and mental welfare of the native population, and the preservation of the most interesting remnants of untouched habitat, are just never made. Any such oversimplification is, of course, subject to error in detail, but it nevertheless stands as a touchstone to where we stand in conservation. In much more guarded phrases, and with considerable supporting data, Bernard Frank and Anthony Netboy say much the same thing about governmental conservation in the United States in their recently published Water, Land, and People .

The Living Wilderness↗
USGS2025

Preparation and analysis methods for fish tissue collected from Lake Koocanusa, Montana

Lake Koocanusa, a reservoir, receives mine wastes from metallurgical coal mines in the Elk River Valley of British Columbia, Canada. Selenium and other elements discharged by the mines into the waters of the United States can pose unknown risks to aquatic life. The U.S. Geological Survey Wyoming-Montana Water Science Center can collaborate with Montana Fish, Wildlife and Parks and other State and Federal agencies to design studies and to collect fish tissues to help fill this knowledge gap. This report describes the processes, techniques, and methods used to collect and analyze fish tissue collected from Lake Koocanusa; and procedures used to review and manage data, including quality assurance and quality control procedures used by the U.S. Geological Survey Wyoming-Montana Water Science Center and supporting analytical laboratories. These fish tissue collections began in 2021.

Montana↗
USGS2019

Use of set blanks in reporting pesticide results at the U.S. Geological Survey National Water Quality Laboratory, 2001-15

Executive Summary Background .—Pesticide results from the U.S. Geological Survey (USGS) National Water Quality Laboratory (NWQL) are used for water-quality assessments by many agencies and organizations. The USGS is committed to providing data of the highest possible quality to the consumers of its data. A cooperator’s inquiries about specific pesticide detections in water revealed potential laboratory contamination issues for some results. Consequently, the USGS conducted an extensive evaluation of potential low-level contamination related to processing or analysis of water-quality samples at NWQL for 21 pesticide compounds of interest to the cooperator. This is the most comprehensive study of NWQL pesticide quality-control (QC) results to date. Purpose and scope .—The purpose of this study was to document protocols used by the NWQL to censor pesticide results and to determine the effects of laboratory contamination—as determined from detections in laboratory set blanks—on pesticide detections in groundwater and surface-water samples. More than 30,000 pesticide results from 113 selected batches of samples (2 percent or less of total batches) analyzed by the NWQL during the 15 years from 2001 to 2015 were reviewed. All laboratory results from the selected batches, including results from environmental (surface water and groundwater) and QC (set-blank, blind-blank, and blind-spike) samples, were evaluated. The study includes results for 21 pesticide compounds analyzed in groundwater and surface-water samples collected across the United States. Eleven pesticide compounds were analyzed by a gas chromatography/mass spectrometry method and 10 compounds by a liquid chromatography/mass spectrometry method. Objectives and methods .—The objectives of this study were to (1) determine the characteristics of laboratory contamination over time, (2) compare distributions of pesticide results in set blanks with distributions in environmental samples, (3) evaluate the potential for false-positive and false-negative reporting of results, and (4) evaluate the effects of reevaluating historical pesticide results using 2017 compound identification protocols on detections of pesticides in groundwater and surface-water samples. The 113 instrument batches selected for this study contained detections of one or more of the 21 pesticide compounds in set blanks or were among those batches with the highest pesticide detection frequencies in set blanks. As a result, the dataset for this study was targeted toward pesticides and batches with laboratory contamination. The objectives were addressed by statistically comparing environmental and set-blank results; computing moving averages of set-blank detection frequencies to identify periods of episodic contamination; and using summary statistics, tabular summaries, and graphical approaches, such as time-series plots and cumulative distribution functions. Results .— Objective 1 : Laboratory contamination, as determined by pesticide detections in set blanks, was found in 13 percent of set-blank results from the 113 targeted batches included in this study (as compared to 6 percent of set-blank results from all 7,620 batches analyzed during the study period). It is estimated that 92 percent of the laboratory contamination during the study period was episodic, meaning that it occurred during discrete periods of time. All 21 of the targeted pesticide compounds had periods of episodic contamination, with most episodes ranging in duration from about 1 to 8 months. The remaining 8 percent of laboratory contamination was random or from a known source (deterministic). Objective 2 : For some compounds, graphs of cumulative distribution functions of the entire distributions of set-blank and environmental samples overlap, suggesting that there is no difference in the distributions of the two types of samples. However, time-series graphs show that detections in set blanks often occur at different times (sometimes separated by years) than detections in environmental samples, indicating clear differences in those distributions, and indicating the importance of evaluating the timing of detections in all sample types. For most compounds detected in set-blank and environmental samples, detection frequencies were significantly greater in set blanks than in groundwater or surface-water samples ( p <0.05). There are several explanations for this finding, including that the 113 batches of samples chosen for this study targeted batches with detections in set blanks or that detections in set-blank samples were historically determined with less stringent identification criteria than for environmental samples (groundwater and surface-water samples). Objective 3 : The false-positive and false-negative rates from blind samples submitted during the study period by the USGS Quality Systems Branch generally were less than 1 and 5 percent, respectively, for the 21 pesticides. The only compound with a false-positive rate greater than 1 percent was flumetsulam (2.6 percent), indicating that there is a higher likelihood of flumetsulam being reported as a detection when it is not present in an environmental sample compared with the reporting of other compounds. Objective 4 : Altogether, for data in targeted batches, NWQL would have reported 0.1 percent of results from groundwater samples and 1.4 percent of results from surface-water samples differently if 2017 identification protocols were applied to historical pesticide results. In most of these cases, detections observed in historical results would change to nondetections. The small percentages of changes that would occur if historical data were reevaluated indicate that historical protocols used by the NWQL to identify detections in environmental samples were robust and produced results that are predominantly consistent with current [2017] practices. Conclusions .—The NWQL produces high-quality pesticide results at environmentally relevant concentrations. NWQL identification protocols and censoring practices are largely effective at minimizing the reporting of false-positive and false-negative results. Laboratory contamination, when it occurred, tended to occur in episodes; thus, evaluating the timing and magnitude of detections in set blanks relative to detections in environmental samples was determined to be an important consideration for analysis of environmental results. Because NWQL censoring practices do not address all types and occurrences of laboratory contamination, options for additional censoring practices are provided for data users with more specific or stringent data-quality objectives. The methods used to analyze the 21 compounds for this report can similarly be applied to all 173 pesticide compounds that were analyzed by the NWQL during the same time period. This study also has helped to identify potential improvements in reporting USGS data, such as conducting more frequent review of set-blank datasets.

Scientific Investigations Report↗
USGS2011

Design of forest bird monitoring for strategic habitat conservation on Kaua'i Island, Hawai'i

This report was commissioned by the U.S. Fish and Wildlife Service (USFWS). The purpose was to develop a monitoring program for Kaua`i forest birds in the USFWS Strategic Habitat Conservation and adaptive management frameworks. Monitoring within those frameworks is a tool to assess resource responses to management and conservation actions, and through an iterative learning process improve our understanding of species recovery, effective management, and knowledge gaps. This report provides only the monitoring component of both frameworks, and we apply the monitoring program to the East Alaka`i Protective Fence Project. The East Alaka`i Protective Fence Project is a joint project by the USFWS, State of Hawai`i Division of Forest and Wildlife, Kaua`i Watershed Alliance, and The Nature Conservancy to restore and preserve an 809 ha area of native forest bird habitat through fencing, and ungulate and weed control. The primary purpose of the project is to restore and preserve the habitat that will in turn support abundant and resilient bird populations. This report contains: A monitoring program specifically developed to track bird distribution, density and demography, and habitat for the East Alaka`i Protective Fence Project; A review of the Kaua`i forest bird surveys; A description of the current status and trends of Kaua`i forest birds; An assessment and evaluation of the current surveys; A monitoring program developed to sample bird distribution, density and demography, and habitat at three general levels of spatial scale. Without the management components described in the East Alaka`i Protective Fence Project and the Revised Recovery Plan for Hawaiian Forest Birds (USFWS 2006) the bird monitoring recommended in this report is little better than surveillance (i.e., monitoring without a link to management). If, however, the proposed management actions are implemented in conjunction with the recommended bird monitoring, then this monitoring program will identify population changes in a timely manner and facilitate identification of the proximate causes of population changes.

Hawaii↗
USGS2017

Ecology of the macrophyte Podostemum ceratophyllum Michx. (Hornleaf riverweed), a widespread foundation species of eastern North American rivers

Podostemum ceratophyllum , commonly called Hornleaf Riverweed, occurs in mid-order montane and piedmont rivers of eastern North America, where the plant grows submerged and attached to rocks and stable substrates in swift, aerated water. Multiple studies, mostly conducted in the southern portions of the plant’s range, have shown that Podostemum can variously influence benthic communities in flowing waters. However, a synthetic review of the biology and ecology of the plant is needed to inform conservation, particularly because P. ceratophyllum is reported to be in decline in much of its range, for mostly unknown reasons. We have thus summarized the literature showing that Podostemum provides substantial habitat for invertebrates and fish, may be consumed by invertebrates, turtles, and other vertebrates, removes and sequesters dissolved elements (i.e., nitrogen, phosphorus, calcium, zinc, etc.) from the water column, and contributes organic matter to the detrital pool. Podostemum may be tolerant to some forms of pollution but appears vulnerable to sedimentation, epiphytic over-growth, and hydrologic changes that result in desiccation, and possibly increased herbivory pressure. Much remains unknown about Podostemum , including aspects of morphological variation, seed dispersal, and tolerance to changes in temperature and water chemistry. Nonetheless, Podostemum may be considered a foundation species, whose loss from eastern North American rivers is likely to affect higher trophic levels and ecosystem processes.

Aquatic Botany↗
USGS2018

Regeneration of Salicaceae riparian forests in the Northern Hemisphere: A new framework and management tool

Human activities on floodplains have severely disrupted the regeneration of foundation riparian shrub and tree species of the Salicaceae family ( Populus and Salix spp.) throughout the Northern Hemisphere. Restoration ecologists initially tackled this problem from a terrestrial perspective that emphasized planting. More recently, floodplain restoration activities have embraced an aquatic perspective, inspired by the expanding practice of managing river flows to improve river health (environmental flows) . However, riparian Salicaceae species occupy floodplain and riparian areas, which lie at the interface of both terrestrial and aquatic ecosystems along watercourses . Thus, their regeneration depends on a complex interaction of hydrologic and geomorphic processes that have shaped key life-cycle requirements for seedling establishment . Ultimately, restoration needs to integrate these concepts to succeed. However, while regeneration of Salicaceae is now reasonably well-understood, the literature reporting restoration actions on Salicaceae regeneration is sparse, and a specific theoretical framework is still missing. Here, we have reviewed 105 peer-reviewed published experiences in restoration of Salicaceae forests, including 91 projects in 10 world regions, to construct a decision tree to inform restoration planning through explicit links between the well-studied biophysical requirements of Salicaceae regeneration and 17 specific restoration actions, the most popular being planting (in 55% of the projects), land contouring (30%), removal of competing vegetation (30%), site selection (26%), and irrigation (24%). We also identified research gaps related to Salicaceae forest restoration and discuss alternative, innovative and feasible approaches that incorporate the human component.

Journal of Environmental Management↗
USGS2018

Population genomic surveys for six rare plant species in San Diego County, California

San Diego County is a hotspot of biodiversity, situated at the intersection of the Baja peninsula, the California floristic province, and the desert southwest. This hotspot is characterized by a high number of rare and endemic species, which persist alongside a major urban epicenter. San Diego County has implemented a strategic management plan that identifies species, based on low numbers of occurrences or high level of threat, for which management practices are recommended. In creating a management plan for rare species, it is important to strike a balance between preserving locally adapted traits and maintaining genetic diversity, as species’ ranges fluctuate in response to a changing climate and habitat fragmentation. This project, in partnership with the San Diego Natural History Museum, aims to provide a reference point for the current status of genetic diversity of rare plant species that will inform future preservation and restoration efforts. We focused on six threatened or endangered plant species: Acanthomintha ilicifolia , Baccharis vanessae , Chloropyron maritimum ssp. maritimum , Deinandra conjugens , Dicranostegia orcuttiana , and Monardella viminea . For each species, botanists from the San Diego Natural History Museum visited all known occurrences in San Diego County and collected leaf tissue for genetic and cytological analysis. We then developed a panel of genetic markers to estimate genetic diversity and population structure. This population genetic survey provided insight into the amount of genetic differentiation across each species’ range, identified isolated occurrences potentially subject to inbreeding or genetic bottlenecks, and identified areas that are rich sources of allelic diversity. Finally, we convened a panel of experts to review results and compatible management options for each species. A summary of the management workshop is included in this report. Overall, we found low genetic differentiation among occurrences across the San Diego region for all species, with the exception of A. ilicifolia . Relative inbreeding was low and consistent across sites, and genetic diversity across sites was variable, with noted exceptions. These findings allow for a wide array of management options that are compatible with panmictic population structure in five of the six surveyed species.

California↗
USGS2011

Recommended methods for range-wide monitoring of prairie dogs in the United States

One of the greatest challenges for conserving grassland, prairie scrub, and shrub-steppe ecosystems is maintaining prairie dog populations across the landscape. Of the four species of prairie dogs found in the United States, the Utah prairie dog (Cynomys parvidens) is listed under the Endangered Species Act (ESA) as threatened, the Gunnison's prairie dog (C. gunnisoni) is a candidate for listing in a portion of its range, and the black-tailed prairie dog (C. ludovicianus) and white-tailed prairie dog (C. leucurus) have each been petitioned for listing at least once in recent history. Although the U.S. Fish and Wildlife Service (USFWS) determined listing is not warranted for either the black-tailed prairie dog or white-tailed prairie dog, the petitions and associated reviews demonstrated the need for the States to monitor and manage for self-sustaining populations. In response to these findings, a multi-State conservation effort was initiated for the nonlisted species which included the following proposed actions: (1) completing an assessment of each prairie dog species in each State, (2) developing a range-wide monitoring protocol for each species using a statistically valid sampling procedure that would allow comparable analyses across States, and (3) monitoring prairie dog status every 3-5 years depending upon the species. To date, each State has completed an assessment and currently is monitoring prairie dog status; however, for some species, the inconsistency in survey methodology has made it difficult to compare data year-to-year or State-to-State. At the Prairie Dog Conservation Team meeting held in November 2008, there was discussion regarding the use of different methods to survey prairie dogs. A recommendation from this meeting was to convene a panel in a workshop-type forum and have the panel review the different methods being used and provide recommendations for range-wide monitoring protocols for each species of prairie dog. Consequently, the Western Association of Fish and Wildlife Agencies (WAFWA), in coordination with USFWS and U.S. Geological Survey (USGS), hosted a prairie dog species survey methodology workshop January 25-28, 2010 in Fort Collins, Colorado. The workshop provided all WAFWA partners and interested parties the opportunity to present their survey methodology to a review panel made up of experts in the fields of quantitative biology, population biology, species biology, and biostatistics. This report presents the panel's survey methodology recommendations for each of the four species of prairie dogs found in the United States and, for the black-tailed prairie dog, a list of action items to facilitate implementation of the recommended methodology.

Scientific Investigations Report↗
USGS2013

Methods to assess geological CO 2 storage capacity: Status and best practice

To understand the emission reduction potential of carbon capture and storage (CCS), decision makers need to understand the amount of CO 2 that can be safely stored in the subsurface and the geographical distribution of storage resources. Estimates of storage resources need to be made using reliable and consistent methods. Previous estimates of CO 2 storage potential for a range of countries and regions have been based on a variety of methodologies resulting in a correspondingly wide range of estimates. Consequently, there has been uncertainty about which of the methodologies were most appropriate in given settings, and whether the estimates produced by these methods were useful to policy makers trying to determine the appropriate role of CCS. In 2011, the IEA convened two workshops which brought together experts for six national surveys organisations to review CO 2 storage assessment methodologies and make recommendations on how to harmonise CO 2 storage estimates worldwide. This report presents the findings of these workshops and an internationally shared guideline for quantifying CO 2 storage resources.

Report↗
USGS2018

Review: Past and future fault rupture lengths in seismic source characterization—The long and short of it

The potential rupture length of an active fault is primary input, and an uncertainty, in source characterization for seismic hazard analysis. The past several decades have seen source models in which faults are divided into potential rupture segments based on fault‐specific behavioral and geometric observations. These models (prescribed segmentation) produced single and multisegment ruptures for use in earthquake probability and regional ground‐motion estimates. The 2013 Uniform California Earthquake Rupture Forecast, Version 3 (UCERF3), relaxed segmentation through modeling of fault‐to‐fault jumps that result in ruptures along the San Andreas fault system as long as 1200 km. Principle controls of UCERF3 rupture length are the stepover distance between different faults or fault sections, and their orientation relative to modeled coulomb stress changes. Observations of surface faulting worldwide since the mid‐1800s in shallow continental crust show that only 30 of the reported ruptures, about 12% of the reported examples, have been longer than 100 km; only 6 have been longer than 300 km and none has exceeded 500 km. A review of characteristics of long ruptures shows that, in general, they occur along essentially continuous traces with limited stepping or branching from one fault to another as opposed to rupture propagation on linkages of different faults with highly variable physical characteristics. These commonly occupy from 10% to 70% of the total host fault length. Neither segmented nor relaxed models of rupture length have been tested by the occurrence of actual ruptures. There is no reason why segmentation models incorporating timing, dynamic, and rheological factors cannot provide reasonable approximations of future rupture length. For many faults of concern worldwide, this may be the most effective approach.

California↗
USGS1951

Summary of the research work of the Trace Elements Section, Geochemistry and Petrology Branch, for the period April 1, 1948-December 31, 1950

This report summarizes the research work of the Trace Elements Section, Geochemistry and Petrology Branch, from the organization of the Section in April 1948 to December 31, 1950. The research undertaken thus far consists of laboratory and related field studies in the following fields: 1. Mineralogic and petrologic investigations of radioactive rocks, minerals, and ores. 2. Investigations of chemical methods of analysis for uranium, thorium, and other elements and compounds in radioactive materials, and related chemical problems. 3. Investigations of spectrographic methods of analysis for a wide variety of elements in radioactive materials. 4. Investigations of radiometric methods of analysis as applied to radioactive materials. It should be emphasized that the work undertaken thus far, described under the headings "Future work", is almost entirely in the nature of investigations supporting the field appraisal of known important uraniferous deposits. A comprehensive program of more fundamental research was submitted in April 1949 in a report entitled "Proposed program of desirable research in the geochemistry of uranium," but funds for this work have not been authorized. It is hoped, however, that funds to support basic research of the type indicated in that report may be available in the future. This report does not cover the analytical work of the Section nor the public-sample program. The analytical work has been summarized for the fiscal year 1950 in the report, "Numerical summary of the analytical work of the Trace Elements Section, Geochemistry and Petrology Branch, for the fiscal year 1950," by John C. Rabbit, U.S. Geol. Survey Trace Elements Memorandum Rept. 174, October 1950. A report on the public-sample program is in preparation. Much of the material in this report has been paraphrased from reports prepared by members of the Section. My special thanks are due them; to Earl Ingerson, chief of the Geochemistry and Petrology Branch of the Survey, for his critical review; to my secretary, Marie Woolihan, for her aid in collecting material; and to Virginia Layne of the editorial staff of the Section for typing the manuscript and the multilith mats.

Trace Elements Investigations↗
USGS2014

Nonlesions, misdiagnoses, missed diagnoses, and other interpretive challenges in fish histopathology studies: a guide for investigators, authors, reviewers, and readers

Differentiating salient histopathologic changes from normal anatomic features or tissue artifacts can be decidedly challenging, especially for the novice fish pathologist. As a consequence, findings of questionable accuracy may be reported inadvertently, and the potential negative impacts of publishing inaccurate histopathologic interpretations are not always fully appreciated. The objectives of this article are to illustrate a number of specific morphologic findings in commonly examined fish tissues (e.g., gills, liver, kidney, and gonads) that are frequently either misdiagnosed or underdiagnosed, and to address related issues involving the interpretation of histopathologic data. To enhance the utility of this article as a guide, photomicrographs of normal and abnormal specimens are presented. General recommendations for generating and publishing results from histopathology studies are additionally provided. It is hoped that the furnished information will be a useful resource for manuscript generation, by helping authors, reviewers, and readers to critically assess fish histopathologic data.

Toxicologic Pathology↗
USGS2014

Methow and Columbia Rivers studies: summary of data collection, comparison of database structure and habitat protocols, and impact of additional PIT tag interrogation systems to survival estimates, 2008-2012

The U.S. Geological Survey (USGS) received funding from the Bureau of Reclamation (Reclamation) to provide monitoring and evaluation on the effectiveness of stream restoration efforts by Reclamation in the Methow River watershed. This monitoring and evaluation program is designed to partially fulfill Reclamation’s part of the 2008 Biological Opinion for the Federal Columbia River Power System that includes a Reasonable and Prudent Alternative (RPA) to protect listed salmon and steelhead across their life cycle. The target species in the Methow River for the restoration effort include Upper Columbia River (UCR) spring Chinook salmon (Oncorhynchus tshawytscha), UCR steelhead (Oncorhynchus mykiss), and bull trout (Salvelinus confluentus), which are listed as threatened or endangered under the Endangered Species Act. Since 2004, the USGS has completed two projects of monitoring and evaluation in the Methow River watershed. The first project focused on the evaluation of barrier removal and steelhead recolonization in Beaver Creek with Libby and Gold Creeks acting as controls. The majority of this work was completed by 2008, although some monitoring continued through 2012. The second project (2008–2012) evaluated the use and productivity of the middle Methow River reach (rkm 65–80) before the onset of multiple off-channel restoration projects planned by the Reclamation and Yakama Nation. The upper Methow River (upstream of rkm 80) and Chewuch River serve as reference reaches and the Methow River downstream of the Twisp River (downstream of rkm 65) serves as a control reach. Restoration of the M2 reach was initiated in 2012 and will be followed by a multi-year, intensive post-evaluation period. This report is comprised of three chapters covering different aspects of the work completed by the USGS. The first chapter is a review of data collection that documents the methods used and summarizes the work done by the USGS from 2008 through 2012. This data summary was designed to show some initial analysis and to disseminate summary information that could potentially be used in ongoing modeling efforts by USGS, Reclamation, and University of Idaho. The second chapter documents the database of fish and habitat data collected by USGS from 2004 through 2012 and compares USGS habitat protocols to the Columbia Habitat Monitoring Program (CHaMP) protocol. The third chapter is a survival analysis of fish moving through Passive Integrated Transponder (PIT) tag interrogation systems in the Methow and Columbia Rivers. It examines the effects of adding PIT tags and/or PIT tag interrogation systems on survival estimates of juvenile steelhead and Chinook salmon.

Washington↗