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At least 613 records · Page 34Linked to original sources

Discrete sample introduction module for quantitative and isotopic analysis of methane and other gases by cavity ring-down spectroscopy

Carbon dioxide (CO 2 ) and methane (CH 4 ) are natural and anthropogenic products that play a central role in the global carbon cycle and regulating Earth’s climate. Applications utilizing laser absorption spectroscopy, which continuously measure concentrations and stable isotope ratios of these greenhouse gases, are routinely employed to measure the source and magnitude of atmospheric inputs. We developed a discrete sample introduction module (DSIM) to enable measurements of methane and CO 2 concentrations and δ 13 C values from limited volume (5–100 mL) gas samples when interfaced with a commercially available cavity ring-down spectroscopy (CRDS) analyzer. The analysis has a dynamic range that spans six orders of magnitude from 100% analyte to the lower limit of instrument detection (2 ppm). We demonstrate system performance for methane by comparing concentrations and δ 13 C results from the DSIM-CRDS system and traditional methods for a variety of sample types, including low concentration (nanomolar CH 4 ) seawater and high concentration (>90% CH 4 ) natural gas. The expansive concentration range of the field-portable DSIM-CRDS system can measure enhances analytical performance for investigating methane and CO 2 dynamics and, potentially, other gases measured by laser absorption spectroscopy.

Environmental Science & Technology↗

National Park Service vegetation inventory program: Mississippi National River and Recreation Area, Minnesota

The Mississippi National River and Recreation Area (MISS) vegetation mapping project is an initiative of the National Park Service (NPS) Vegetation Inventory Program (VIP) to classify and map vegetation types of MISS. (Note: “MISS” is also referred to as “park” throughout this report.) The goals of the project are to adequately describe and map vegetation types of the park and to provide the NPS Natural Resource Inventory and Monitoring (I&M) Program, resource managers, and biological researchers with useful baseline vegetation information. The MISS vegetation mapping project was officially started in spring 2012, with a scoping meeting wherein partners discussed project objectives, goals, and methods. Major collaborators at this meeting included staff from the NPS MISS, the NPS Great Lakes Network (GLKN), NatureServe, and the USGS Upper Midwest Environmental Sciences Center. The Minnesota Department of Natural Resources (DNR) was also in attendance. Common to all NPS VIP projects, the three main components of the MISS vegetation mapping project are as follows: (1) vegetation classification, (2) vegetation mapping, and (3) map accuracy assessment (AA). In this report, each of these fundamental components is discussed in detail. With the completion of the MISS vegetation mapping project, all nine park units within the NPS GLKN have received vegetation classification and mapping products from the NPS and USGS vegetation programs. Voyageurs National Park and Isle Royale National Park were completed during 1996–2001 (as program pilot projects) and another six park units were completed during 2004–11, including the Apostle Islands National Lakeshore, Grand Portage National Monument, Indiana Dunes National Lakeshore, Pictured Rocks National Lakeshore, Saint Croix National Scenic Riverway, and Sleeping Bear Dunes National Lakeshore.

Natural Resource Report↗

Combining tangential flow filtration and size fractionation of mesocosm water as a method for the investigation of waterborne coral diseases

The causative agents of most coral diseases today remain unknown, complicating disease response and restoration efforts. Pathogen identifications can be hampered by complex microbial communities naturally associated with corals and seawater, which create complicating “background noise” that can potentially obscure a pathogen’s signal. Here, we outline an approach to investigate waterborne coral diseases that use a combination of coral mesocosms, tangential flow filtration, and size fractionation to reduce the impact of this background microbial diversity, compensate for unknown infectious dose, and further narrow the suspect pool of potential pathogens. As proof of concept, we use this method to compare the bacterial communities shed into six Montastraea cavernosa coral mesocosms and demonstrate this method effectively detects differences between diseased and healthy coral colonies. We found several amplicon sequence variants (ASVs) in the diseased mesocosms that represented 100% matches with ASVs identified in prior studies of diseased coral tissue, further illustrating the effectiveness of our approach. Our described method is an effective alternative to using coral tissue or mucus to investigate waterborne coral diseases of unknown etiology and can help more quickly narrow the pool of possible pathogens to better aid in disease response efforts. Additionally, this versatile method can be easily adapted to characterize either the entire microbial community associated with a coral or target-specific microbial groups, making it a beneficial approach regardless of whether a causative agent is suspected or is completely unknown.

Florida↗

Cinnamon gulch revisited: Another look at separating natural and mining-impacted contributions to instream metal load

Baseline, premining data for streams draining abandoned mine lands is virtually non existent, and indirect methods for estimating premining conditions are needed to establish realistic, cost effective cleanup goals. One such indirect method is the proximal analog approach, in which premining conditions are estimated using data from nearby mineralized areas that are unaffected by mining. In this paper, we combine the proximal analog approach with a quantitative mass balance framework using data from a spatially-detailed synoptic sampling campaign. The combined approach is applied to Cinnamon Gulch, a headwater stream with numerous draining adits. Synoptic sampling results indicate that three of the top five metal sources are affected by mining activities, and stream segments draining these sources account for a large percentage of overall metal loading within the study reach. These initial calculations overestimate the effects of mining, as the affected stream segments were likely acidic and metal rich prior to mining. Premining loads and concentrations were therefore determined through a replacement approach in which the chemistry of each mining-affected stream segment is revised based on proximal analog concentrations. The revised loading profiles indicate that 15–17% of the Al, Cd, Cu, Mn, Ni, and Zn loads are attributable to mining, whereas the mining contribution for Pb is 40%. Premining concentrations of Al, Cd, Cu, Mn, and Zn are estimated to be in excess of aquatic life standards over the length of the study reach.

Colorado↗

The use of synthetic jarosite as an analog for natural jarosite

The presence of jarosite in soil or mining waste is an indicator of acidic sulfate-rich conditions. Physical and chemical properties of synthetic jarosites are commonly used as analogs in laboratory studies to determine solubility and acid-generation of naturally occurring jarosites. In our work we have mineralogically and chemically characterized both natural and synthetic jarosites. Analysis of 32 natural hydrothermal and supergene K- and Na-jarosites indicates no (< 5 mole %) solid solution between K and Na end members. Instead, our detailed study of cell dimensions and composition reveals discrete mixtures of K and Na end members. Hydronium-bearing jarosite was detected in only one natural sample, and it appears that hydronium-bearing jarosites are metastable. Although the presence of hydronium in jarosite cannot be directly measured, we found that when synthetic hydronium-bearing jarosites are heated at 120°C for 78 days or 240°C for 24 hours, Fe(OH)SO4 is formed. The Fe(OH)SO4 is easily detected by X-ray diffraction and, hence, can be used as a post-mortem indicator of the presence of hydronium jarosite. Results from our synthetic jarosite studies indicate that natural metastable hydronium-bearing jarosite or iron-deficient forms of natural jarosite likely play an important role in acid generation in some mining wastes, but are not accurately represented by synthetic jarosite prepared by commonly used methods. The widespread practice of heating to at least 110°C after jarosite synthesis appears to drive off structural waters from protonated hydroxyl sites, which changes the properties of the jarosite. Therefore, synthetic jarosite should not be heated above 95 oC if it is to be used as an analog for low-temperature natural jarosite in mining wastes.

Conference Paper↗

Hydrologic Drought Decision Support System (HyDroDSS)

The hydrologic drought decision support system (HyDroDSS) was developed by the U.S. Geological Survey (USGS) in cooperation with the Rhode Island Water Resources Board (RIWRB) for use in the analysis of hydrologic variables that may indicate the risk for streamflows to be below user-defined flow targets at a designated site of interest, which is defined herein as data-collection site on a stream that may be adversely affected by pumping. Hydrologic drought is defined for this study as a period of lower than normal streamflows caused by precipitation deficits and (or) water withdrawals. The HyDroDSS is designed to provide water managers with risk-based information for balancing water-supply needs and aquatic-habitat protection goals to mitigate potential effects of hydrologic drought. This report describes the theory and methods for retrospective streamflow-depletion analysis, rank correlation analysis, and drought-projection analysis. All three methods are designed to inform decisions made by drought steering committees and decisionmakers on the basis of quantitative risk assessment. All three methods use estimates of unaltered streamflow, which is the measured or modeled flow without major withdrawals or discharges, to approximate a natural low-flow regime. Retrospective streamflow-depletion analysis can be used by water-resource managers to evaluate relations between withdrawal plans and the potential effects of withdrawal plans on streams at one or more sites of interest in an area. Retrospective streamflow-depletion analysis indicates the historical risk of being below user-defined flow targets if different pumping plans were implemented for the period of record. Retrospective streamflow-depletion analysis also indicates the risk for creating hydrologic drought conditions caused by use of a pumping plan. Retrospective streamflow-depletion analysis is done by calculating the net streamflow depletions from withdrawals and discharges and applying these depletions to a simulated record of unaltered streamflow. Rank correlation analysis in the HyDroDSS indicates the persistence of hydrologic measurements from month to month for the prediction of developing hydrologic drought conditions and quantitatively indicates which hydrologic variables may be used to indicate the onset of hydrologic drought conditions. Rank correlation analysis also indicates the potential use of each variable for estimating the monthly minimum unaltered flow at a site of interest for use in the drought-projection analysis. Rank correlation analysis in the HyDroDSS is done by calculating Spearman’s rho for paired samples and the 95-percent confidence limits of this rho value. Rank correlation analysis can be done by using precipitation, groundwater levels, measured streamflows, and estimated unaltered streamflows. Serial correlation analysis, which indicates relations between current and future values, can be done for a single site. Cross correlation analysis, which indicates relations among current values at one site and current and future values at a second site, also can be done. Drought-projection analysis in the HyDroDSS indicates the risk for being in a hydrologic drought condition during the current month and the five following months with and without pumping. Drought-projection analysis also indicates the potential effectiveness of water-conservation methods for mitigating the effect of withdrawals in the coming months on the basis of the amount of depletion caused by different pumping plans and on the risk of unaltered flows being below streamflow targets. Drought-projection analysis in the HyDroDSS is done with Monte Carlo methods by using the position analysis method. In this method the initial value of estimated unaltered streamflows is calculated by correlation to a measured hydrologic variable (monthly precipitation, groundwater levels, or streamflows from an index station identified with the rank correlation analysis). Then a pseudorandom number generator is used to create 251 six-month-long flow traces by using a bootstrap method. Serial correlation of the estimated unaltered monthly minimum streamflows determined from the rank correlation analysis is preserved within each flow trace. The sample of unaltered streamflows indicates the risk of being below flow targets in the coming months under simulated natural conditions (without historic withdrawals). The streamflow-depletion algorithms are then used to estimate risks of flow being below targets if selected pumping plans are used. This report also describes the implementation of the HyDroDSS. The HyDroDSS was developed as a Microsoft Access® database application to facilitate storage, handling, and use of hydrologic datasets with a simple graphical user interface. The program is implemented in the database by using the Visual Basic for Applications® (VBA) programming language. Program source code for the analytical techniques is provided in the HyDroDSS and in electronic text files accompanying this report. Program source code for the graphical user interface and for data-handling code, which is specific to Microsoft Access® and the HyDroDSS, is provided in the database. An installation package with a run-time version of the software is available with this report for potential users who do not have a compatible copy of Microsoft Access®. Administrative rights are needed to install this version of the HyDroDSS. A case study, to demonstrate the use of HyDroDSS and interpretation of results for a site of interest, is detailed for the USGS streamgage on the Hunt River (station 01117000) near East Greenwich in central Rhode Island. The Hunt River streamgage was used because it has a long record of streamflow and is in a well-studied basin with a substantial amount of hydrologic and water-use data including groundwater pumping for municipal water supply.

Rhode Island↗

Using the precipitation-runoff modeling system to predict seasonal water availability in the upper Klamath River basin, Oregon and California

Accurate forecasts of the streamflow expected during late spring and summer in the Upper Klamath River Basin in southern-central Oregon and northern California are used by water management agencies to balance water allocations for agriculture, aquatic habitat, and hydropower-production needs. Streamflow forecasts are also used by irrigation farmers for planning. The forecasts are typically made twice a month starting as early in the water year as December. Multiple regression equations relating real-time snowpack and precipitation conditions to seasonal streamflow volumes have been used for many years in forecasting. However, with warming temperature trends and lower snowpack, such forecasts based on historical data could become less reliable in the future. If the timing and relation of snowpack and precipitation are outside of the range of the historical data used to create the equations, the forecasts become extrapolations. Statistical forecast equations are also limited in their ability to forecast streamflow in groundwater-dominated basins having inter-annual lag. As an additional method for seasonal streamflow forecasting, a physical-process-based hydrologic model employing the Precipitation-Runoff Modeling System (PRMS) was developed in cooperation with the U.S. Bureau of Reclamation for the Upper Klamath Basin in this study. The model was calibrated for the portion of the basin draining into Upper Klamath Lake. PRMS is a deterministic, distributed-parameter, physical-process-based modeling system developed by the U.S. Geological Survey. It simulates daily streamflow, snow, solar radiation, evapotranspiration, surface-water, and groundwater processes within the basin. A model calibration and validation period for water years 2000–15 and water years 1984–99, respectively, was used. The model was calibrated and validated using measured streamflow, snowpack, evapotranspiration, and solar radiation data sets. Interpolated daily precipitation and air temperature data from 32 meteorological stations within and surrounding the Upper Klamath Basin were used as model input. Performance statistics, used to evaluate how well simulated daily streamflow matched with measured streamflow included percent bias, percent relative error, and root-mean-square error. The statistics were computed annually, monthly, for October–March, and for April–September. With the exception of the October–March period, percent bias statistics were all within plus or minus 5-percent for both the calibration and validation periods. Limitations to using the model are error in the precipitation and air temperature input time series data, which include measurement error and error in the spatial interpolation method. Other errors include measured daily streamflow data, which were adjusted for consumptive use losses to make them more closely resemble natural streamflow for calibration. The model developed for the Upper Klamath Basin can be used to forecast streamflow from the Sprague and Williamson River Basins and inflow to Upper Klamath Lake. Reliable forecasts at these locations are needed for managing water for irrigation, ecosystem health, and power production. Using the models in a forecast application requires assembling model input data sets of anticipated daily precipitation and minimum and maximum air temperature for the period after the date the forecast is made and the end of the forecasted period. These climate data sets can be based on historical or synthetic records, at the discretion of the forecaster. With the Ensemble Streamflow Prediction method, a suite of streamflow scenarios is simulated using multiple years of climate data as model input. The forecasted streamflow is determined from knowing the exceedance probabilities of the simulated streamflows. In this study, the model and the Ensemble Streamflow Prediction method were used to forecast the volume of inflow to Upper Klamath Lake for a 6-month period from April 1, 2015, to September 30, 2015, using a range of climate data sets based on El Niño Southern Oscillation (ENSO) criteria. Because 2015 was a warm phase ENSO period, climate data for 10 warm phase ENSO years from 1980 to 2010 were used as input to the model. The simulated April–September 2015 UKL inflow volume based on measured 2015 climate data was 482,000 acre-feet, which was very close to the 50th percent exceedance probability computed from 10 simulated scenarios that used warm phase ENSO climate input data from 1980–2010.

California, Oregon↗

Fort Collins Science Center- Policy Analysis and Science Assistance Branch : Integrating social, behavioral, economic and biological sciences

The Fort Collins Science Center's Policy Analysis and Science Assistance (PASA) Branch is a team of approximately 22 scientists, technicians, and graduate student researchers. PASA provides unique capabilities in the U.S. Geological Survey by leading projects that integrate social, behavioral, economic, and biological analyses in the context of human-natural resource interactions. Resource planners, managers, and policymakers in the U.S. Departments of the Interior (DOI) and Agriculture (USDA), State and local agencies, as well as international agencies use information from PASA studies to make informed natural resource management and policy decisions. PASA scientists' primary functions are to conduct both theoretical and applied social science research, provide technical assistance, and offer training to advance performance in policy relevant research areas. Management and research issues associated with human-resource interactions typically occur in a unique context, involve difficult to access populations, require knowledge of both natural/biological science in addition to social science, and require the skill to integrate multiple science disciplines. In response to these difficult contexts, PASA researchers apply traditional and state-of-the-art social science methods drawing from the fields of sociology, demography, economics, political science, communications, social-psychology, and applied industrial organization psychology. Social science methods work in concert with our rangeland/agricultural management, wildlife, ecology, and biology capabilities. The goal of PASA's research is to enhance natural resource management, agency functions, policies, and decision-making. Our research is organized into four broad areas of study.

Fact Sheet↗

Spatially explicit rangeland erosion monitoring using high-resolution digital aerial imagery

Nearly all of the ecosystem services supported by rangelands, including production of livestock forage, carbon sequestration, and provisioning of clean water, are negatively impacted by soil erosion. Accordingly, monitoring the severity, spatial extent, and rate of soil erosion is essential for long-term sustainable management. Traditional field-based methods of monitoring erosion (sediment traps, erosion pins, and bridges) can be labor intensive and therefore are generally limited in spatial intensity and/or extent. There is a growing effort to monitor natural resources at broad scales, which is driving the need for new soil erosion monitoring tools. One remote-sensing technique that can be used to monitor soil movement is a time series of digital elevation models (DEMs) created using aerial photogrammetry methods. By geographically coregistering the DEMs and subtracting one surface from the other, an estimate of soil elevation change can be created. Such analysis enables spatially explicit quantification and visualization of net soil movement including erosion, deposition, and redistribution. We constructed DEMs (12-cm ground sampling distance) on the basis of aerial photography immediately before and 1 year after a vegetation removal treatment on a 31-ha Pi&ntilde;on-Juniper woodland in southeastern Utah to evaluate the use of aerial photography in detecting soil surface change. On average, we were able to detect surface elevation change of &plusmn; 8&minus;9cm and greater, which was sufficient for the large amount of soil movement exhibited on the study area. Detecting more subtle soil erosion could be achieved using the same technique with higher-resolution imagery from lower-flying aircraft such as unmanned aerial vehicles. DEM differencing and process-focused field methods provided complementary information and a more complete assessment of soil loss and movement than any single technique alone. Photogrammetric DEM differencing could be used as a technique to quantitatively monitor surface change over time relative to management activities.

Utah↗

Estimation of Leakage Potential of Selected Sites in Interstate and Tri-State Canals Using Geostatistical Analysis of Selected Capacitively Coupled Resistivity Profiles, Western Nebraska, 2004

With increasing demands for reliable water supplies and availability estimates, groundwater flow models often are developed to enhance understanding of surface-water and groundwater systems. Specific hydraulic variables must be known or calibrated for the groundwater-flow model to accurately simulate current or future conditions. Surface geophysical surveys, along with selected test-hole information, can provide an integrated framework for quantifying hydrogeologic conditions within a defined area. In 2004, the U.S. Geological Survey, in cooperation with the North Platte Natural Resources District, performed a surface geophysical survey using a capacitively coupled resistivity technique to map the lithology within the top 8 meters of the near-surface for 110 kilometers of the Interstate and Tri-State Canals in western Nebraska and eastern Wyoming. Assuming that leakage between the surface-water and groundwater systems is affected primarily by the sediment directly underlying the canal bed, leakage potential was estimated from the simple vertical mean of inverse-model resistivity values for depth levels with geometrically increasing layer thickness with depth which resulted in mean-resistivity values biased towards the surface. This method generally produced reliable results, but an improved analysis method was needed to account for situations where confining units, composed of less permeable material, underlie units with greater permeability. In this report, prepared by the U.S. Geological Survey in cooperation with the North Platte Natural Resources District, the authors use geostatistical analysis to develop the minimum-unadjusted method to compute a relative leakage potential based on the minimum resistivity value in a vertical column of the resistivity model. The minimum-unadjusted method considers the effects of homogeneous confining units. The minimum-adjusted method also is developed to incorporate the effect of local lithologic heterogeneity on water transmission. Seven sites with differing geologic contexts were selected following review of the capacitively coupled resistivity data collected in 2004. A reevaluation of these sites using the mean, minimum-unadjusted, and minimum-adjusted methods was performed to compare the different approaches for estimating leakage potential. Five of the seven sites contained underlying confining units, for which the minimum-unadjusted and minimum-adjusted methods accounted for the confining-unit effect. Estimates of overall leakage potential were lower for the minimum-unadjusted and minimum-adjusted methods than those estimated by the mean method. For most sites, the local heterogeneity adjustment procedure of the minimum-adjusted method resulted in slightly larger overall leakage-potential estimates. In contrast to the mean method, the two minimum-based methods allowed the least permeable areas to control the overall vertical permeability of the subsurface. The minimum-adjusted method refined leakage-potential estimation by additionally including local lithologic heterogeneity effects.

Scientific Investigations Report↗

Soil seed banks and the potential restoration of forested wetlands after farming

1 Changes in farming practice provide an opportunity to restore once extensive forested wetlands on agricultural land. In some parts of the world, however, it has proved difficult to restore the full complement of plant species through natural regeneration. Similarly, the restoration of forested wetlands by replanting has often resulted in ecosystems of low diversity. Better methods of restoring these important ecosystems are now required and baldcypress swamps provide an opportunity to investigate alternative approaches to the restoration of forested wetlands. This study examined the composition of seed banks of farmed fields to determine their value in restoring swamps in the south-eastern United States. 2 A seed bank assay of soils from baldcypress swamps was conducted to determine the extent to which seeds are maintained during farming for various lengths of time. Soils from swamps that were farmed for 0–50 years were collected near the northern boundary of the Mississippi Alluvial Valley along the Cache River, Illinois. Soils were placed in a glasshouse setting in flooded and freely drained conditions, and the numbers and species of seeds germinating were recorded. 3 Woody species including trees, shrubs, and vines were poorly represented in seed banks of both farmed and intact sites (51 and 9 sites, respectively). Missing dominants in the seed banks included tree species with short-lived seeds such as Taxodium distichum and Nyssa aquatica . Cephalanthus occidentalis constituted the most abundantly dispersed seed of all woody species. 4 Herbaceous species were well represented in the seed banks of both farmed and intact swamps (species richness of 207 vs. 173 species, respectively) suggesting that herbaceous species may live longer than woody species in seed banks. Few of the herbaceous species decreased in seed density in seed banks with time under cultivation, although seed density was lower at sites that had not been farmed. Species that relied on vegetative organs for dispersal were absent in the seed banks of farmed sites including Heteranthera dubia , Hottonia inflata , Lemna minor , Lemna trisulca and Wolffia columbiana . These species may require active reintroduction during restoration. 5 Synthesis and applications. Both restoration ecologists and managers of nature conservation areas need to be cognisant of seed bank and dispersal characteristics of species to effectively restore and manage forested wetlands. In the case of baldcypress swamps, critical components of the vegetation are not maintained in seed banks, which may make these floodplain wetlands difficult to restore via natural recolonization. Ultimately, the successful restoration of abandoned farm fields to forested wetlands may depend on the re-engineering of flood pulsing across landscapes to reconnect dispersal pathways.

Illinois↗

Review of ESA SYMP 7: A dynamic perspective on ecosystem restoration–establishing temporal connectivity at the intersection between paleoecology and restoration ecology

Landscape connectivity is vital not only spatially, but also temporally; as ecosystems change, it is important to be aware of past, present, and future variables that may impact ecosystem function and biodiversity. As climate and environments continue to change, choosing appropriate restoration targets is becoming more challenging. By considering the paleoecological and paleoenvironmental record for a given region, restoration practitioners are not only able to bear witness to that region’s dynamic history, but also potentially identify multiple, alternative natural ecosystem states. Indeed, one of the deliverables of conservation paleobiology, a field that applies paleontological data and methods to present-day conservation, is to inform restoration targets. Consideration of future change is equally important, and paleoecological and paleoclimatological data are essential for informing models that can help us understand how climate change is affecting species and ecosystems at different temporal scales. The symposium “A dynamic perspective on ecosystem restoration: Establishing temporal connectivity at the intersection between paleoecology and restoration ecology” gathered representatives from macroecology, paleoecology, and restoration ecology to share their perspectives on temporal connectivity and how consideration of an ecosystem’s past, present, and future can positively impact restoration and conservation. Some speakers approached the topic theoretically, while others considered it from a more practical and applied standpoint. The goals of the symposium were to build a stronger relationship among the subdisciplines, stimulate new ideas, and identify data and/or products that would be useful to share across subdisciplines.

Bulletin Ecological Society of America↗

Successful molecular detection studies require clear communication among diverse research partners

Molecular detection techniques are powerful tools used in ecological applications ranging from diet analyses to pathogen surveillance. Research partnerships that use these tools often involve collaboration among professionals with expertise in field biology, laboratory techniques, quantitative modeling, wildlife disease, and natural resource management. However, in many cases, each of these collaborators lacks specific knowledge about the approaches, decisions, methods, and terminology used by their research partners, which can impede effective communication and act as a barrier to the efficient use of molecular data for ecological inferences and subsequent conservation decision making. We outline a collaborative framework to assist colleagues with diverse types of expertise to effectively translate their scientific and management needs to research partners from other specialties. The molecular techniques used to detect organisms will continue to advance both in sophistication and in the breadth of ecological applications. Our objective is to enable ecologists to harness the full utility of these methods by developing effective collaborative partnerships.

Frontiers in Ecology and the Environment↗

Whole-coal versus ash basis in coal geochemistry: a mathematical approach to consistent interpretations

Several standard methods require coal to be ashed prior to geochemical analysis. Researchers, however, are commonly interested in the compositional nature of the whole-coal, not its ash. Coal geochemical data for any given sample can, therefore, be reported in the ash basis on which it is analyzed or the whole-coal basis to which the ash basis data are back calculated. Basic univariate (mean, variance, distribution, etc.) and bivariate (correlation coefficients, etc.) measures of the same suite of samples can be very different depending which reporting basis the researcher uses. These differences are not real, but an artifact resulting from the compositional nature of most geochemical data. The technical term for this artifact is subcompositional incoherence. Since compositional data are forced to a constant sum, such as 100% or 1,000,000 ppm, they possess curvilinear properties which make the Euclidean principles on which most statistical tests rely inappropriate, leading to erroneous results. Applying the isometric logratio (ilr) transformation to compositional data allows them to be represented in Euclidean space and evaluated using traditional tests without fear of producing mathematically inconsistent results. When applied to coal geochemical data, the issues related to differences between the two reporting bases are resolved as demonstrated in this paper using major oxide and trace metal data from the Pennsylvanian-age Pond Creek coal of eastern Kentucky, USA. Following ilr transformation, univariate statistics, such as mean and variance, still differ between the ash basis and whole-coal basis, but in predictable and calculated manners. Further, the stability between two different components, a bivariate measure, is identical, regardless of the reporting basis. The application of ilr transformations addresses both the erroneous results of Euclidean-based measurements on compositional data as well as the inconsistencies observed on coal geochemical data reported on different bases.

International Journal of Coal Geology↗

Pesticides in U.S. streams and groundwater

A 10­-year study by the U.S. Geological Survey’s (USGS’s) National Water-­Quality Assessment (NAWQA) Program provides a national-­scale view of pesticide occurrence in streams and groundwater. The 1992-2001 study builds upon a preliminary analysis from NAWQA’s first phase of studies during 1992-1996 (1, 2). Pesticide data available from various studies prior to 1992 did not allow national assessment because of limited and variable geographic coverage (usually focusing on individual states or regions), sparse and inconsistent inclusion of pesticides in use, and variable sampling designs (3-5). The expanded geographic coverage and improved data following 10 years of study (Figure 1) confirm and reinforce previously reported findings and enable more detailed analyses of each topic. This article summarizes selected findings from a comprehensive report (6), with a focus on the nature of pesticide occurrence and potential significance to human health and stream ecosystems. Information on study design and methods as well as additional analysis of geographic patterns and trends in relation to use and management practices are available in the full report (6).

Environmental Science & Technology↗

Magnetic studies of the Florida peninsula

This investigation was undertaken primarily as a pilot‐experiment for gaining information concerning the field‐technique and accuracy which is needed for covering large areas in detail and at the same time economically. Owing to the complex nature of magnetic observations, such a pilot‐study serves, in addition, as a basis for determining the best methods of presenting the results of large areal studies in an easily comprehensible form. The State of Florida was chosen for such preliminary study for the following reasons: First, because it is geologically ideal for such an investigation since it comprises a series of unconsolidated, flat‐lying, Tertiary and Cretaceous sediments of low magnetic permeability covering a complex and much‐folded crystalline basement composed largely of rocks carrying strongly paramagnetic materials; secondly, because information concerning the structural trends of the crystalline basement would be of great interest and importance in the study of Appalachian orogeny and the relationship of the Florida Peninsula to both the Appalachian and Antillean tectonic systems.

Florida↗

Point count offsets for estimating population sizes of north American landbirds

Bird monitoring in North America over several decades has generated many open databases, housing millions of structured and semi-structured bird observations. These provide the opportunity to estimate bird densities and population sizes, once variation in factors such as underlying field methods, timing, land cover, proximity to roads, and uneven spatial coverage are accounted for. To facilitate integration across databases, we introduce NA-POPS: Point Count Offsets for Population Sizes of North American Landbirds. NA-POPS is a large-scale, multi-agency project providing an open-source database of detectability functions for all North American landbirds. These detectability functions allow the integration of data from across disparate survey methods using the QPAD approach, which considers the probability of detection (q) and availability (p) of birds in relation to area (a) and density (d). To date, NA-POPS has compiled over 7.1 million data points spanning 292 projects from across North America, and produced detectability functions for 338 landbird species. Here, we describe the methods used to curate these data and generate these detectability functions, as well as the open-access nature of the resulting database.

Ibis↗

Host susceptibility to snake fungal disease is highly dispersed across phylogenetic and functional trait space

Emerging infectious diseases (EIDs) reduce host population sizes, cause extinction, disassemble communities, and have indirect negative effects on human well-being. Fungal EIDs have reduced population abundances in amphibians and bats across many species over large areas. The recent emergence of snake fungal disease (SFD) may have caused declines in some snake populations in the Eastern United States (EUS), which is home to a phylogenetically and ecologically diverse assembly of 98 taxa. SFD has been documented in only 23 naturally occuring species, although this is likely an underestimate of the number of susceptible taxa. Using several novel methods, including artificial neural networks, we combine phylogenetic and trait-based community estimates from all taxa in this region to show that SFD hosts are both phylogenetically and ecologically randomly dispersed. This might indicate that other species of snakes in the EUS could be currently infected or susceptible to SFD. Our models also indicate that information about key traits that enhance susceptiblity is lacking. Surveillance should consider that all snake species and habitats likely harbor this pathogen.

Science Advances↗