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At least 613 records · Page 34Linked to original sources
USGS2004

Effect of outflow on spring and summertime distribution and abundance of larval and juvenile fishes in the upper San Francisco Estuary

We analyzed data on spring and summertime larval and juvenile fish distribution and abundance in the upper San Francisco Estuary (SFE), California between 1995 and 2001. The upper SFE includes the tidal freshwater areas of the Sacramento-San Joaquin Delta downstream to the euryhaline environment of San Pablo Bay. The sampling period included years with a variety of outflow conditions. Fifty taxa were collected using a larval tow net. Two common native species, delta smelt Hypomesus transpacifucus and longfin smelt Spirinchus thaleichthys, and four common alien taxa, striped bass Morone saxatilis, threadfin shad Dorosoma petenense, gobies of the genus Tridentiger, and yellowfin goby Acanthogobins flavimanus, were selected for detailed analysis. Outflow conditions had a strong influence on the geographic distribution of most of the species, but distribution with respect to the 2 psu isohaline (X2) was not affected. The distribution patterns of delta smelt, longfin smelt, and striped bass were consistent with larvae moving from upstream freshwater spawning areas to down-stream estuarine rearing areas. There were no obvious relationships of outflow with annual abundance indices. Our results support the idea of using X2 as an organizing principle in understanding the ecology of larval fishes in the upper SFE. Additional years of sampling will likely lead to additional insights into the early life history of upper SFE fishes. ?? Copyright by the American Fisheries Society 2004.

American Fisheries Society Symposium↗
USGS2013

Statewide summary for Mississippi

The Mississippi coastline is 113 linear kilometers (70 miles) long and its estuaries cover approximately 594 km (369 mi; Figure 1) (Handley and others, 2007). It has a man-made sand beach 43.5 km (27 mi) long and 595.5 km (370 mi) of shoreline (Klein and others, b., 1998). The Mississippi Sound extends across the coastal waters of the State and encompasses 175,412 ha (433,443 acres). It is bordered by the Mississippi coast; Mobile Bay, Ala.; the Gulf Islands National Seashore barrier islands; and Lake Borgne, La. The watersheds and drainages feeding into Mississippi Sound, excluding tidal exchange from the Gulf of Mexico, include Lake Borgne, Pearl River, Jourdan River, Wolf River, Biloxi River, Tchoutacabouffa River, Pascagoula River, and Mobile Bay. The Pascagoula River is one of the last undammed rivers in the continental U.S. and the only undammed river flowing into the Gulf of Mexico. Freshwater inflow into Mississippi Sound, excluding that from Mobile Bay, averages 882.4 m 3 per second (30,806 ft 3 per second). The Mississippi coastal zone contains approximately one-third of the State’s 120 ecological communities (Klein and others, a., 1998). Regional land use includes silviculture, agriculture, and urban development, including several coastal casinos. Commercial shipping, shipbuilding, phosphate rock refinement, and electric power generation companies include some of the industrial complexes found along the Mississippi coast. The three counties found along the Mississippi coast, Hancock, Harrison, and Jackson Counties, had a total population of 370,702 as of 2010, constituting 12.5 percent of the State’s population (U.S. Census Bureau, 2010). These counties cover over 160.9 km (100 mi) of coastline and are one of the fastest growing regions in the state (Klein and others, b., 1998). The casino industry, military installations, trade, and manufacturing provide most jobs in coastal Mississippi. Two major deep-water ports exist in coastal Mississippi. Recreation and tourism have a significant impact on Mississippi’s economy as well, annually attracting approximately 1.8 million visitors to the coast and generating approximately \$3.5 billion statewide, about one-third of which comes from coastal tourism. Ninety percent of the coastal tourism expenditures come from recreational boating and related industries. Marine recreational fishing generates more than \$50 million annually, with approximately 280,000 participants, more than a million recreational fishing expeditions, and over 40,000 resident saltwater sportfishing licenses sold each year. More than one-fourth of the anglers fishing in coastal Mississippi are tourists. Landings of shrimp, crabs, oysters, and finfish equal approximately 99.8 million kg (220 million lbs) of seafood annually. The entire seafood industry in coastal Mississippi, including processing of seafood caught in other Gulf States, generates approximately \$450 million per year.

Mississippi↗
USGS2000

Recent research on the hydrodynamics of the Sacramento - San Joaquin River Delta and north San Francisco Bay

This article presents an overview of recent findings from hydrodynamic research on circulation and mixing in the Sacramento-San Joaquin Delta (Delta) (Figure 1) and North San Francisco Bay (North Bay) (Figure 2). For the purposes of this article, North Bay includes San Pablo Bay, Carquinez Strait, and Suisun Bay. The findings presented are those gained from field studies carried out by the U.S. Geological Survey (USGS), as part of the Interagency Ecological Program (IEP), and Stanford University beginning about 1993. The premise behind these studies was that a basic understanding of circulation and mixing patterns in the Bay and Delta is an essential part of understanding how biota and water quality are affected by natural hydrologic variability, water appropriation, and development activities. Data collected for the field studies described in this article have significantly improved our understanding of Bay and Delta hydrodynamics. Measured flows ,in the Delta have provided valuable information on how water moves through the Delta's network of channels and how export pumping affects flows. Studies of the shallows and shallow-channel exchange processes conducted in Honker Bay have shown that the water residence time in Honker Bay is much shorter than previously reported (on the order of hours to several tidal cycles instead ofweeks). Suisun Bay studies have provided data on hydrodynamic transport and accumulation mechanisms that operate primarily in the channels. The Suisun Bay studies have caused us to revise our understanding of residual circulation in the channels of North Bay and of "entrapment" mechanisms in the low salinity zone. Finally, detailed tidal and residual (tidally averaged) time-scale studies of the mechanisms that control gravitational circulation in the estuary show that density-driven transport in the channels is governed by turbulence time-scale (seconds) interactions between the mean flow and stratification. The hydrodynamic research summarized in this article spans a range of estuarine environments (deep water channels to shallow water habitats and brackish water to freshwater) at time scales that range from seconds to years.

California↗
USGS2017

Functional integrity of freshwater forested wetlands, hydrologic alteration, and climate change

Climate change will challenge managers to balance the freshwater needs of humans and wetlands. The Intergovernmental Panel on Climate Change predicts that most regions of the world will be exposed to higher temperatures, CO 2 , and more erratic precipitation, with some regions likely to have alternating episodes of intense flooding and mega-drought. Coastal areas will be exposed to more frequent saltwater inundation as sea levels rise. Local land managers desperately need intra-regional climate information for site-specific planning, management, and restoration activities. Managers will be challenged to deliver freshwater to floodplains during climate change-induced drought, particularly within hydrologically altered and developed landscapes. Assessment of forest health, both by field and remote sensing techniques, will be essential to signal the need for hydrologic remediation. Studies of the utility of the release of freshwater to remediate stressed forested floodplains along the Murray and Mississippi Rivers suggest that brief episodes of freshwater remediation for trees can have positive health benefits for these forests. The challenges of climate change in forests of the developing world will be considered using the Tonle Sap of Cambodia as an example. With little ecological knowledge of the impacts, managing climate change will add to environmental problems already faced in the developing world with new river engineering projects. These emerging approaches to remediate stressed trees will be of utmost importance for managing worldwide floodplain forests with predicted climate changes.

Ecosystem Health and Sustainability↗
USGS2026

Spatially referenced watershed models for the binational Red–Assiniboine River Basin: Bayesian vs frequentist comparison

Excess nutrient loading remains a leading cause of declining water quality in lakes, estuaries, and coastal waters worldwide, with global economic costs of US$200 billion – US$2 trillion annually from impacts on fisheries, tourism, freshwater resources, and water treatment. Our study focuses on total phosphorus (TP) in Lake Winnipeg and its binational Red-Assiniboine River Basin, where nutrient inputs have degraded water quality and increased cyanobacterial blooms. These changes pose ecological, public health, and economic risks. We applied a spatially referenced watershed model with a hybrid statistical-mechanistic structure partitioning annual nutrient loads into land-use export, land-to-water delivery, and in-reservoir decay. Bayesian and traditional frequentist model calibrations were compared. In the frequentist model, coefficients for agricultural inputs, forests /wetlands, stream channels, precipitation, and reservoir losses were statistically significant, whereas coefficient for wastewater was not. In contrast, all variables were successfully calibrated using the Bayesian approach. Model results delineate TP-export hotspots across the basin, showing that 54–62% of TP originates from the U.S., with agricultural sources ranging 62–72%—highlighting the importance of agriculture-focused Best Management Practices. Given the global relevance of nutrient-driven water-quality challenges, our results highlight Bayesian calibration for robust risk assessment and adaptive nutrient management.

Red–Assiniboine River Basin↗
USGS2007

Wind damage and salinity effects of Hurricanes Katrina and Rita on coastal baldcypress forests of Louisiana

The frequency of hurricane landfall in a given coastal stretch may play a more important role in the ecology of coastal forests than previously thought because of direct and indirect impacts of fallen trees and the introduction of salt water that lingers long after the storm passes. Findings show that surge events can inundate interior freshwater forests many miles from the coast and elevate soil salinities twofold to threefold. These elevated salinities may contribute to delayed mortality of certain tree species and set the stage for eventual forest decline and dieback.

Louisiana↗
USGS2023

A century of hydrologic data collection prepares western Long Island for current and future water-resources challenges

Freshwater is a vital natural resource. New York is a water-rich State; however, even here, the economical use of water resources is needed to ensure there is enough water of adequate quality for human and ecological needs—now and into the future. Nowhere in New York is this more evident than on Long Island where public-water supply is obtained from the sole-source aquifers directly beneath the 3 million people that live there. The U.S. Geological Survey works in partnership with the Nassau County Department of Public Works and Department of Health to monitor streamflow, groundwater, water quality, and water use.

New York↗
USGS2024

Quantifying the relative importance of biotic and abiotic factors in landscape-based models of stream fish distributions

Lotic fish species distributions are frequently predicted using remotely sensed habitat variables that characterize the adjacent landscape and serve as proxies for instream habitat. Recent advancements in statistical methodology, however, allow for leveraging fish assemblage data when predicting distributions. This is important because assemblage composition likely provides better information about instream habitat compared to landscape-derived metrics and therefore may improve predictions. To better understand the value of using multi-species fish data in species distribution modeling, we fit two conditional random fields (CRF) models to quantify the relative importance of fish assemblage co-occurrence, landscape-derived habitat variables, and interactions between these two predictor groups (i.e., effects of co-occurrence could be context-dependent) at over 1200 stream catchments in Pennsylvania, USA. We first compared predictive performance of CRF models against traditionally used single-species logistic regressions (generalized linear models; GLMs) and found that inclusion of fish assemblage data often improved predictive performance. The multi-species CRF models performed significantly better at predicting occurrence for 63% of species with an average percent increase in AUC of 25% compared to GLMs. Furthermore, the CRF identified species co-occurrences as more informative, and thus relatively more important, at predicting occurrence than the other effect types. The CRF also suggested that allowing these biotic effects to be context-dependent was important for predicting occurrence of many species. These findings illustrate the value of fish assemblage data for landscape-scale species distribution modeling and leveraging this information can improve predictions and inferences to help inform the management and conservation of freshwater fishes.

Pennsylvania↗
USGS2014

Combining demographic and genetic factors to assess population vulnerability in stream species

Accelerating climate change and other cumulative stressors create an urgent need to understand the influence of environmental variation and landscape features on the connectivity and vulnerability of freshwater species. Here, we introduce a novel modeling framework for aquatic systems that integrates spatially explicit, individual‐based, demographic and genetic (demogenetic) assessments with environmental variables. To show its potential utility, we simulated a hypothetical network of 19 migratory riverine populations (e.g., salmonids) using a riverscape connectivity and demogenetic model (CDFISH). We assessed how stream resistance to movement (a function of water temperature, fluvial distance, and physical barriers) might influence demogenetic connectivity, and hence, population vulnerability. We present demographic metrics (abundance, immigration, and change in abundance) and genetic metrics (diversity, differentiation, and change in differentiation), and combine them into a single vulnerability index for identifying populations at risk of extirpation. We considered four realistic scenarios that illustrate the relative sensitivity of these metrics for early detection of reduced connectivity: (1) maximum resistance due to high water temperatures throughout the network, (2) minimum resistance due to low water temperatures throughout the network, (3) increased resistance at a tributary junction caused by a partial barrier, and (4) complete isolation of a tributary, leaving resident individuals only. We then applied this demogenetic framework using empirical data for a bull trout ( Salvelinus confluentus ) metapopulation in the upper Flathead River system, Canada and USA, to assess how current and predicted future stream warming may influence population vulnerability. Results suggest that warmer water temperatures and associated barriers to movement (e.g., low flows, dewatering) are predicted to fragment suitable habitat for migratory salmonids, resulting in the loss of genetic diversity and reduced numbers in certain vulnerable populations. This demogenetic simulation framework, which is illustrated in a web‐based interactive mapping prototype, should be useful for evaluating population vulnerability in a wide variety of dendritic and fragmented riverscapes, helping to guide conservation and management efforts for freshwater species.

Montana↗
USGS2019

Observations of the spawning ecology of the imperiled Clear Lake Hitch Lavinia exilicauda chi

Migrations for the purposes of reproduction are widely documented across the animal kingdom and are particularly common in fishes and other aquatic organisms (Dingle 2014). One important migration strategy in fishes is potamodromy, which is the movement from one location to another entirely within freshwater (Morais and Daverat 2016). Thurow (2016) estimated that worldwide there are approximately 13,000 potamodromous fish species. Potamodromous species as a group are also relatively imperiled, owing to the loss or destruction of the diversity of habitats often required for successful reproduction and recruitment (Thurow 2016). The Clear Lake Hitch Lavinia exilicauda chi is an imperiled potamodromous cyprinid that is endemic to a single freshwater lake: Clear Lake, Lake County, California, USA. The species lives to approximately six years of age and attains a maximum size of approximately 350 mm fork length. As juveniles and adults, it feeds primarily on macroinvertebrates, including insects and zooplankton (Geary and Moyle 1980). Formerly highly abundant and a staple food for the Pomo tribes of the Clear Lake region, Clear Lake Hitch abundance is believed to have declined substantially from historical levels (California Department of Fish and Wildlife [CDFW] 2014). Presently, Clear Lake Hitch is listed as threatened under the California Endangered Species Act and has been petitioned for listing under the U.S. Endangered Species Act. The purpose of this paper is to document fortuitous observations of Clear Lake Hitch spawning and holding in stream habitat to generate baseline information that is needed to manage the species. The observations facilitated addressing the following questions (1) under what water temperature and flow conditions does spawning occur?, (2) what are the major habitat features where spawning takes place?, (3) what are the fundamental aspects of spawning behavior?, (4) what is the immediate fate of eggs deposited during spawning?, and (5) when not engaged in spawning, what type of stream habitat is used by Clear Lake Hitch and do they actively feed?

California↗
USGS2023

A metasystem approach to designing environmental flows

Accelerating the design and implementation of environmental flows (e-flows) is essential to curb the rapid, ongoing loss of freshwater biodiversity and the benefits it provides to people. However, the effectiveness of e-flow programs may be limited by a singular focus on ensuring adequate flow conditions at local sites, which overlooks the role of other ecological processes. Recent advances in metasystem ecology have shown that biodiversity patterns and ecosystem functions across river networks result from the interplay of local (environmental filtering and biotic interactions) and regional (dispersal) ecological processes. No guidelines currently exist to account for these processes in designing e-flows. We address this gap by providing a step-by-step operational framework that outlines how e-flows can be designed to conserve or restore metasystem dynamics. Our recommendations are relevant to diverse regulatory contexts and can improve e-flow outcomes even in basins with limited in situ data.

BioScience↗
USGS2015

The Everglades Depth Estimation Network (EDEN) surface-water model, version 2

The Everglades Depth Estimation Network (EDEN) is an integrated network of water-level gages, interpolation models that generate daily water-level and water-depth data, and applications that compute derived hydrologic data across the freshwater part of the greater Everglades landscape. The U.S. Geological Survey Greater Everglades Priority Ecosystems Science provides support for EDEN in order for EDEN to provide quality-assured monitoring data for the U.S. Army Corps of Engineers Comprehensive Everglades Restoration Plan. The EDEN surface-water model, version 2 (V2), interpolates water-level data from a network of 240 gages to generate gridded daily water-level surfaces for the freshwater domain of the Everglades. When these spatiotemporal continuous surfaces are combined with EDEN’s digital elevation model of ground surface, derived hydrologic data provide scientists and water managers working in the Everglades with data necessary to analyze ecological and biotic responses to hydrologic changes in the Everglades. Derived datasets include water depth, recession rates, days since last dry, water-surface slopes, and hydroperiod. The V2 model includes enhancements from the previous model (version 1; V1) to accommodate changes in the water-level gage network, adjustments to water-level data, improved understanding of the flow dynamics (particularly near canals), and installation of an elevation benchmark network. Enhancements to the V2 model included Expansion of the EDEN domain: The model domain was expanded to include a part of southern Big Cypress National Preserve and northwestern Everglades National Park upstream of the marsh mangrove wetlands, thus completing the coastal connection along the southwestern boundary of the model; and Development of subdomain models: To account for insufficient water-control structure gage data at some subbasin boundaries, subdomain models were developed for five subdomains, and the resulting water-level surfaces were merged to generate the final water-level surface. Model performance statistics show a general improvement in the V2 model as compared to the V1 model. Overall, the root mean squared error (RMSE) was reduced by 2.42 centimeters (cm) to 4.68 cm. In Water Conservation Area 3A North and Water Conservation Area 3B, the RMSE was reduced by 10.88 and 9.15 cm, respectively. In addition to evaluating model performance statistics, 2-cm water-level maps were generated and evaluated for irregular contours that would indicate a potential problem either with data input or water-level estimates. Three applications of the EDEN-modeled water surfaces and other EDEN datasets are presented in the report to show how scientists and resource managers are using EDEN datasets to analyze biological and ecological responses to hydrologic changes in the Everglades. The biological responses of two important Everglades species, alligators and wading birds, to changes in hydrology are described. The effects of hydrology on fire dynamics in the Everglades are also discussed.

Florida↗
USGS2009

The decline of North American freshwater fishes

North America has a broad array of freshwater ecosystems because of the continent's complex geography and geological history. Within a multitude of habitats—that include streams, large rivers, natural lakes, springs, and wetlands—rich assemblages of fishes reside, representing diverse taxonomic groups with unique ecological requirements. They face an unprecedented conservation crisis. 1 In the last few decades, the proportion of inland fishes of North America, which are considered imperiled or extinct, increased from 20 to 40%. 2 Although extinctions have occurred, many species and populations are declining in range size and abundance. The fish biota of the continent as a whole remains diverse; however, we can take action to stem any further declines.

ActionBioscience↗
USGS2008

Assessing streamflow characteristics as limiting factors on benthic invertebrate assemblages in streams across the western United States

1. Human use of land and water resources modifies many streamflow characteristics, which can have significant ecological consequences. Streamflow and invertebrate data collected at 111 sites in the western U.S.A. were analysed to identify streamflow characteristics (magnitude, frequency, duration, timing and variation) that are probably to limit characteristics of benthic invertebrate assemblages (abundance, richness, diversity and evenness, functional feeding groups and individual taxa) and, thus, would be important for freshwater conservation and restoration. Our analysis investigated multiple metrics for each biological and hydrological characteristic, but focuses on 14 invertebrate metrics and 13 streamflow metrics representing the key associations between streamflow and invertebrates. 2. Streamflow is only one of many environmental and biotic factors that influence the characteristics of invertebrate assemblages. Although the central tendency of invertebrate assemblage characteristics may not respond to any one factor across a large region like the western U.S.A., we postulate that streamflow may limit some invertebrates. To assess streamflow characteristics as limiting factors on invertebrate assemblages, we developed a nonparametric screening procedure to identify upper (ceilings) or lower (floors) limits on invertebrate metrics associated with streamflow metrics. Ceilings and floors for selected metrics were then quantified using quantile regression. 3. Invertebrate assemblages had limits associated with all streamflow characteristics that we analysed. Metrics of streamflow variation at daily to inter-annual scales were among the most common characteristics associated with limits on invertebrate assemblages. Baseflow recession, daily variation and monthly variation, in streamflow were associated with the largest number of invertebrate metrics. Since changes in streamflow variation are often a consequence of hydrologic alteration, they may serve as useful indicators of ecologically significant changes in streamflow and as benchmarks for managing streamflow for ecological objectives. 4. Relative abundance of Plecoptera, richness of non-insect taxa and relative abundance of intolerant taxa were associated with multiple streamflow metrics. Metrics of sensitive taxa (Ephemeroptera, Plecoptera and Trichoptera), and intolerant taxa generally had ceilings associated with flow metrics while metrics of tolerant taxa, non-insects, dominance and chironomids generally had floors. Broader characteristics of invertebrate assemblages such as abundance and richness had fewer limits, but these limits were nonetheless associated with a broad range of streamflow characteristics.

Freshwater Biology↗
USGS2026

Using demographic estimation and power analysis to inform monitoring efforts and detect declines in freshwater mussels

Population assessments can be used to determine species' viability and inform conservation efforts; however, obtaining sufficient data quality and quantity can be challenging when monitoring resources are scarce. Brook Floater ( Alasmidonta varicosa ) is a freshwater mussel that is state listed in the United States as endangered or threatened in 10 of the 14 states it occupies. Despite the conservation concern, little is known about the size and demographics of most Brook Floater populations. The primary objective of this study was to determine demographic parameters (abundance and survival) for Brook Floater at five newly established, long-term monitoring sites in Maine and Massachusetts, United States. A secondary objective was to evaluate tradeoffs of potential future sampling strategies by state natural resource agencies at these monitoring sites. Mussels were sampled at each site using visual and tactile snorkel surveys twice each summer during 2018–2020 and marked with alphanumeric tags to distinguish individuals. We considered a candidate set of capture-recapture models that allowed parameters to vary depending on year, sampling occasion, and individual shell length. Abundance estimates among sites varied widely, from 29 individuals (range: 12–119) in the Nissitissit River in Massachusetts to 311 individuals (range: 307–320) in the East Branch of the Pleasant River in Maine. Annual survival was high across all sites (0.87–0.96). Given the differences in capture probability and abundance between states, we determined the statistical power available to detect given population declines in Massachusetts and explored alternative population abundance estimators in Maine. The power analysis suggested that the existing sampling regimen in Maine is likely adequate while sampling in Massachusetts may require additional occasions each year to realistically detect population declines with sufficient statistical power. This analysis demonstrates the utility of considering sampling frequency when designing capture-recapture studies for freshwater mussels and other taxa.

Maine, Massachusetts↗
USGS2024

Preparing for today's and tomorrow's water-resources challenges in eastern Long Island, New York

Freshwater is a vital natural resource. Although New York is a water-rich State, the wise and economical use of water resources is needed to ensure that there is enough water of adequate quality for both human and ecological needs—both for today and for tomorrow. Nowhere in New York is this more evident than in Nassau and Suffolk Counties on Long Island, where the public water supply is obtained from the sole-source aquifers located directly beneath the nearly 3 million people who live there. In 2023, in eastern Long Island’s Suffolk County, groundwater was pumped from these aquifers by more than 1,100 public water-supply wells to meet the needs of about 1.5 million people.

New York↗
USGS2015

Spatial variability in growth-increment chronologies of long-lived freshwater mussels: Implications for climate impacts and reconstructions

Estimates of historical variability in river ecosystems are often lacking, but long-lived freshwater mussels could provide unique opportunities to understand past conditions in these environments. We applied dendrochronology techniques to quantify historical variability in growth-increment widths in valves (shells) of western pearlshell freshwater mussels ( Margaritifera falcata ). A total of 3 growth-increment chronologies, spanning 19 to 26 y in length, were developed. Growth was highly synchronous among individuals within each site, and to a lesser extent, chronologies were synchronous among sites. All 3 chronologies negatively related to instrumental records of stream discharge, while correlations with measures of water temperature were consistently positive but weaker. A reconstruction of stream discharge was performed using linear regressions based on a mussel growth chronology and the regional Palmer Drought Severity Index (PDSI). Models based on mussel growth and PDSI yielded similar coefficients of prediction (R 2 Pred ) of 0.73 and 0.77, respectively, for predicting out-of-sample observations. From an ecological perspective, we found that mussel chronologies provided a rich source of information for understanding climate impacts. Responses of mussels to changes in climate and stream ecosystems can be very site- and process-specific, underscoring the complex nature of biotic responses to climate change and the need to understand both regional and local processes in projecting climate impacts on freshwater species.

Écoscience↗