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USGS2019

Factors affecting post-release survival of coded-wire tagged Lake Trout Salvelinus namaycush in Lake Michigan at four historical spawning locations

Since the 1950s, fishery agencies on Lake Michigan have pursued Lake Trout Salvelinus namaycush rehabilitation through Sea Lamprey Petromyzon marinus control, harvest regulations, and by stocking millions of fish annually. Stocking was prioritized at four historically important spawning locations beginning in 1985, and coded wire tags (CWTs) were used to help evaluate performance. We used data from CWT fish captured in fishery-independent surveys from 1998 – 2014 to evaluate relative post-release survival of Lake Trout, estimated by catch-per-unit-effort and corrected for the number of fish stocked (CPUE), across 173 CWT tag lots of the 1994 – 2003 year classes stocked at these four locations. Boosted regression tree (BRT) models were used to assess the relative influence of four variables on Lake Trout CPUE in two age groups (age 4-5 years and 6-10 years) and paired with analyses of variance to test for statistical significance. Genetic strain (29.1%), stocking location (27.8%), mortality at release (23.1%) and predator density (19.9%) had similar influence on the relative survival of younger fish, whereas relative survival of older fish was heavily influenced by stocking location (79.8%). Survival of both age groups was lowest for fish stocked in the Northern Refuge, where the age structure was truncated due to fishery harvest and Sea Lamprey predation. Survival of stocked fish was higher at the Southern Refuge, Clay Banks, and Julian’s Reef, where mortality from sea lamprey and harvest was lower, and where increases in wild Lake Trout have been observed in recent years. Stocked Lake Michigan remnant genetic strains also appeared to survive better than strains from other lakes at these three locations, but strain effects could not be fully disentangled from effects of stocking location, and continued stocking of multiple genetic strains may provide resiliency toward future selection pressures. Continued progress toward rehabilitation will require reducing fishing and lamprey-induced mortality in northern Lake Michigan to build parental stocks of advanced ages as well as balancing efforts among competing management goals.

Lake Michigan↗

USGS2022

Valuing angling on reservoirs using benefit transfer

Economic assessments are rarely applied to inland recreational fisheries for management purposes, especially when compared to fish, habitat, and creel assessments, yet economic assessments can provide critical information for management decisions. We provide a brief overview of economic value, key terminology, and existing economic techniques to address these issues. Benefit transfer, a technique used to measure economic value when an original analysis is not practicable, is conducted by drawing on existing estimates of economic value in similar contexts. We describe an application of benefit transfer to measure the economic value of several recreational fisheries in Nebraska, USA. We examine two approaches to benefit transfer—value transfer and function transfer—which we demonstrate estimate similar economic values for fishing site access but substantially different economic values for catch rate improvements at some reservoirs. We encourage agencies that are responsible for inland recreational fisheries management to consider economic assessment, especially benefit transfer, as a critical tool in the management toolbox.

North American Journal of Fisheries Management↗

USGS2020

Defining the need for genetic stock assignment when describing stock demographics and dynamics: An example using Lake Whitefish in Lake Michigan

Genetic stock assignment is not routinely used when describing the dynamics and demographics of individual stocks supporting mixed-stock fisheries, and capture location and timing are often used as alternative assignment methods. However, variation in stock demographics and dynamics may not be accounted for if stock assignments based on capture location or timing do not accurately reflect genetic assignments. We used Lake Whitefish Coregonus clupeaformis in Lake Michigan as a model fishery to determine whether stock mixing could undermine efforts to describe stock status when using October capture location as a proxy for genetic stock assignment. Accuracy of stock assignments based on October capture location ranged from 54% to 100% among management zones. Metrics describing length and age distributions, weight at length, fecundity, and growth varied among genetic stocks. Stock-specific metrics were typically similar between stock assignment methods (capture location versus genetics) because only one or two genetic stocks were collected in most locations and the majority of those fish were from spatially proximal stocks with similar metrics. However, more extensive mixing of Lake Whitefish stocks has been documented; thus, using capture location for stock assignment could result in incorrect conclusions regarding stock status and harvest management depending on stock composition. Ambiguity in genetic stock assignments was a problem in two management zones, where between 23% and 42% of Lake Whitefish did not assign to a specific stock with a probability of at least 0.70. In the future, using genomic techniques rather than microsatellites may provide different conclusions regarding genetic stock structure; these differences could affect the accuracy of using capture location for stock assignment. Use of capture location as a proxy for genetic stock assignment may not be warranted for all mixed-stock fisheries but may be appropriate when stock mixing is limited or is restricted to stocks with consistently similar characteristics.

Michigan, Wisconsin↗

USGS2022

The importance of phenology and thermal exposure to early life history success of nonnative Smallmouth Bass in the Yellowstone River

Knowledge of potential spread by introduced species is critical to effective management and conservation. The Smallmouth Bass Micropterus dolomieu is an example of a fish that has been introduced globally, often spreads after introduction, and has substantial predatory impacts on fish assemblages. Nonnative Smallmouth Bass in the free-flowing Yellowstone River, Montana, have expanded from warmer, downstream sections of river into colder, upstream sections containing socio-economically valuable trout fisheries. We sought insight into mechanisms controlling upstream spread by evaluating whether progressively colder upstream climates physiologically constrained successful recruitment by limiting age-0 growth and preventing overwinter survival (i.e., population establishment). We documented the phenology, growth, and overwinter survival of age-0 Smallmouth Bass across a temperature gradient leading to their upstream extent in the Yellowstone River. The upstream extent of population establishment did not appear limited by water temperature alone. Age-0 body size at the onset of winter did not differ significantly between colder, upstream reaches and warmer, downstream reaches. Instead, the earlier hatch timing exhibited by some age-0 individuals in upstream sections allowed them to experience longer growing seasons than many individuals in downstream sections. This counter-intuitive hatching phenology mediated much of the expected decreases in growth in colder, upstream climates. Furthermore, evidence of successful overwinter survival and simulations of age-0 starvation mortality indicated that age-0 individuals at the upstream extent of their distribution successfully recruited to the age-1 year-class during four consecutive years. However, age-0 individuals were rare or absent throughout the uppermost upstream distribution of adults, suggesting that something other than temperature limits or discourages reproduction farther upstream. Taken together, our results suggest that Smallmouth Bass have not yet reached the thermal limit of their upstream distribution in the Yellowstone River and that future spread may challenge fisheries managers tasked with management of coldwater trout fisheries in this river.

Montana, Wyoming↗

USGS2020

Evaluating catchability in a large-scale gillnet survey using hydroacoustics: Making the case for coupled surveys

Abundance estimates facilitate successful fisheries management. Fisheries agencies often monitor abundance through fishery independent standardized protocols generating relative measures such as catch-per-unit-effort (CPUE), where CPUE is assumed proportional to true abundance. Unfortunately, this assumption is rarely met as fish behavior and environmental conditions influence catchability and sample gear efficiency. We used paired gillnet and hydroacoustic samples and a catchability equation ( U i = q N i β "> U i =qN i β ) to assess the correspondence between gillnet CPUE ( U i "> U i ) and hydroacoustic abundance estimates ( N i "> N i ). We found that gill nets were hyperstable (i.e., β < 1) and efficiency declined along environmental gradients. These gradients, such as increased depths, and decreased turbidity and water temperatures, likely influenced fish behavior, and encounter and gear saturation rates. As a result, catchability declined with increasing abundance qacross survey regions. Finally, simulations showed that catchability gradients and variable migratory patterns can contribute to annual variation in CPUE indices regardless of changes in abundance. Surveys plagued by varying catchability could benefit from coupling with hydroacoustics, a sample gear less subject to gear efficiency and catchability issues.

Fisheries Research↗

USGS2023

Waterbody size predicts bank- and boat-angler efforts

Bank- and boat-angler efforts are logistically difficult and costly to estimate, preventing landscape-scale estimates that are required to address current and future challenges (e.g., climate change , invasive species) for inland recreational fisheries. Using a large Nebraska, USA, recreational fishery dataset (N = 67 waterbodies), we demonstrate that waterbody size can be used to predict bank- and boat-angler efforts across a heterogeneous landscape of extra small (< 104 ha) and large (> 647 ha) waterbodies. Bank and boat anglers respond to waterbody size, however these relationships appear to be unique between the two angler types. Boat-angler efforts increased as a function of waterbody size, whereas bank-angler efforts increased as a function of waterbody size for extra small waterbodies but not for large waterbodies. The ability to connect waterbody size and angler effort will be important for continued effective inland fisheries management.

Nebraska↗

USGS2025

The Center for the Advancement of Population Assessment Methodology (CAPAM): A perspective on the first 10 years

The Center for the Advancement of Population Assessment Methodology (CAPAM) was established in 2013, envisioned as an institute that could conduct, organize, and communicate stock assessment research with the aim of benefiting fisheries assessment efforts internationally. CAPAM’s activities have focused on its workshop series and consequent special issues in Fisheries Research . The information generated through CAPAM and its permanent recording as journal articles has greatly benefited the stock assessment community and can potentially contribute to modelling in general. We discuss what has made CAPAM successful, its future, and what could be done to reach the ultimate goal of producing a good practices guide for fisheries stock assessment.

Fisheries Research↗

USGS2003

US Atlantic coast striped bass: Issues with a recovered population

Striped bass, Morone saxatilis (Walbaum), is an anadromous species naturally occurring along the US Atlantic coast, which historically supported valuable commercial and recreational fisheries. In response to a near order-of-magnitude decline in landings, the Atlantic States Marine Fisheries Commission enacted a management plan in 1981 protecting fish until they could spawn at least once. By 1989, recruitment increased in natal rivers and regulations were relaxed, permitting limited fisheries by 1990. By 1995, the stock was declared fully recovered. Since the recovery, concern has increased over the health of the stocks. In the 1990s, fish in poor physical condition with dermal lesions became common in Chesapeake Bay. Pathogens of most concern in cultures from fish include the genus Mycobacterium. Coincident with declines in fish health were changes in diets, declines of preferred prey, and reduced growth and condition. Theories were suggested linking declines in condition to reductions in forage base or pathogens. Diets have changed since the 1950s and while many Chesapeake fish are infected with mycobacteria, it is still not known how or if these factors are linked. The highest priorities for research were considered to be: linking numerous local and regional studies to provide a coast-wide perspective; continuation of investigations linking population health to the prey-base; determination of the cause-effect of mycobacteria infections; and formulation of management options.

Fisheries Management and Ecology↗

USGS2011

Using a genetic mixture model to study phenotypic traits: Differential fecundity among Yukon river Chinook Salmon

Fecundity is a vital population characteristic that is directly linked to the productivity of fish populations. Historic data from Yukon River (Alaska) Chinook salmon Oncorhynchus tshawytscha suggest that length‐adjusted fecundity differs among populations within the drainage and either is temporally variable or has declined. Yukon River Chinook salmon have been harvested in large‐mesh gill‐net fisheries for decades, and a decline in fecundity was considered a potential evolutionary response to size‐selective exploitation. The implications for fishery conservation and management led us to further investigate the fecundity of Yukon River Chinook salmon populations. Matched observations of fecundity, length, and genotype were collected from a sample of adult females captured from the multipopulation spawning migration near the mouth of the Yukon River in 2008. These data were modeled by using a new mixture model, which was developed by extending the conditional maximum likelihood mixture model that is commonly used to estimate the composition of multipopulation mixtures based on genetic data. The new model facilitates maximum likelihood estimation of stock‐specific fecundity parameters without first using individual assignment to a putative population of origin, thus avoiding potential biases caused by assignment error. The hypothesis that fecundity of Chinook salmon has declined was not supported; this result implies that fecundity exhibits high interannual variability. However, length‐adjusted fecundity estimates decreased as migratory distance increased, and fecundity was more strongly dependent on fish size for populations spawning in the middle and upper portions of the drainage. These findings provide insights into potential constraints on reproductive investment imposed by long migrations and warrant consideration in fisheries management and conservation. The new mixture model extends the utility of genetic markers to new applications and can be easily adapted to study any observable trait or condition that may vary among populations.

Transactions of the American Fisheries Society↗

USGS2013

Assessing effects of stocked trout on nongame fish assemblages in southern Appalachian Mountain streams

Fisheries managers are faced with the challenge of balancing the management of recreational fisheries with that of conserving native species and preserving ecological integrity. The negative effects that nonnative trout species exert on native trout are well documented and include alteration of competitive interactions, habitat use, and production. However, the effects that nonnative trout may exert on nongame fish assemblages are poorly understood. Our objectives were to quantify the effects of trout stocking on native nongame fish assemblages intensively on one newly stocked river, the North Toe River, North Carolina, and extensively on other southern Appalachian Mountain streams that are annually stocked with trout. In the intensive study, we adopted a before-after, control-impact (BACI) experimental design to detect short-term effects on the nongame fish assemblage and found no significant differences in fish density, species richness, species diversity, or fish microhabitat use associated with trout stocking. We observed differences in fish microhabitat use between years, however, which suggests there is a response to environmental changes, such as the flow regime, which influence available habitat. In the extensive study, we sampled paired stocked and unstocked stream reaches to detect long-term effects from trout stocking; however, we detected no differences in nongame fish density, species richness, species diversity, or population size structure between paired sites. Our results revealed high inherent system variation caused by natural and anthropogenic factors that appear to overwhelm any acute or chronic effect of stocked trout. Furthermore, hatchery-reared trout may be poor competitors in a natural setting and exert a minimal or undetectable impact on native fish assemblages in these streams. These findings provide quantitative results necessary to assist agencies in strategic planning and decision making associated with trout fisheries, stream management, and conservation of native fishes.

Transactions of the American Fisheries Society↗

USGS2015

Landscape prediction and mapping of game fish biomass, an ecosystem service of Michigan rivers

The increased integration of ecosystem service concepts into natural resource management places renewed emphasis on prediction and mapping of fish biomass as a major provisioning service of rivers. The goals of this study were to predict and map patterns of fish biomass as a proxy for the availability of catchable fish for anglers in rivers and to identify the strongest landscape constraints on fish productivity. We examined hypotheses about fish responses to total phosphorus (TP), as TP is a growth-limiting nutrient known to cause increases (subsidy response) and/or decreases (stress response) in fish biomass depending on its concentration and the species being considered. Boosted regression trees were used to define nonlinear functions that predicted the standing crops of Brook Trout Salvelinus fontinalis , Brown Trout Salmo trutta , Smallmouth Bass Micropterus dolomieu , panfishes (seven centrarchid species), and Walleye Sander vitreus by using landscape and modeled local-scale predictors. Fitted models were highly significant and explained 22–56% of the variation in validation data sets. Nonlinear and threshold responses were apparent for numerous predictors, including TP concentration, which had significant effects on all except the Walleye fishery. Brook Trout and Smallmouth Bass exhibited both subsidy and stress responses, panfish biomass exhibited a subsidy response only, and Brown Trout exhibited a stress response. Maps of reach-specific standing crop predictions showed patterns of predicted fish biomass that corresponded to spatial patterns in catchment area, water temperature, land cover, and nutrient availability. Maps illustrated predictions of higher trout biomass in coldwater streams draining glacial till in northern Michigan, higher Smallmouth Bass and panfish biomasses in warmwater systems of southern Michigan, and high Walleye biomass in large main-stem rivers throughout the state. Our results allow fisheries managers to examine the biomass potential of streams, describe geographic patterns of fisheries, explore possible nutrient management targets, and identify habitats that are candidates for species management.

Michigan↗

USGS2015

Effectiveness of a refuge for Lake Trout in Western Lake Superior II: Simulation of future performance

Historically, Lake Superior supported one of the largest and most diverse Lake Trout Salvelinus namaycush fisheries in the Laurentian Great Lakes, but Lake Trout stocks collapsed due to excessive fishery exploitation and predation by Sea Lampreys Petromyzon marinus . Lake Trout stocking, Sea Lamprey control, and fishery regulations, including a refuge encompassing Gull Island Shoal (Apostle Islands region), were used to enable recovery of Lake Trout stocks that used this historically important spawning shoal. Our objective was to determine whether future sustainability of Lake Trout stocks will depend on the presence of the Gull Island Shoal Refuge. We constructed a stochastic age-structured simulation model to assess the effect of maintaining the refuge as a harvest management tool versus removing the refuge. In general, median abundances of age-4, age-4 and older (age-4+), and age-8+ fish collapsed at lower instantaneous fishing mortality rates ( F ) when the refuge was removed than when the refuge was maintained. With the refuge in place, the F that resulted in collapse depended on the rate of movement into and out of the refuge. Too many fish stayed in the refuge when movement was low (0–2%), and too many fish became vulnerable to fishing when movement was high (≥22%); thus, the refuge was more effective at intermediate rates of movement (10–11%). With the refuge in place, extinction did not occur at any simulated level of F , whereas refuge removal led to extinction at all combinations of commercial F and recreational F . Our results indicate that the Lake Trout population would be sustained by the refuge at all simulated F -values, whereas removal of the refuge would risk population collapse at much lower F (0.700–0.744). Therefore, the Gull Island Shoal Refuge is needed to sustain the Lake Trout population in eastern Wisconsin waters of Lake Superior.

Michigan, Minnesota, Wisconsin↗

USGS2016

Comparing life history characteristics of Lake Michigan’s naturalized and stocked Chinook Salmon

Lake Michigan supports popular fisheries for Chinook Salmon Oncorhynchus tshawytscha that have been sustained by stocking since the late 1960s. Natural recruitment of Chinook Salmon in Lake Michigan has increased in the past few decades and currently contributes more than 50% of Chinook Salmon recruits. We hypothesized that selective forces differ for naturalized populations born in the wild and hatchery populations, resulting in divergent life history characteristics with implications for Chinook Salmon population production and the Lake Michigan fishery. First, we conducted a historical analysis to determine if life history characteristics changed through time as the Chinook Salmon population became increasingly naturalized. Next, we conducted a 2-year field study of naturalized and hatchery stocked Chinook Salmon spawning populations to quantify differences in fecundity, egg size, timing of spawning, and size at maturity. In general, our results did not indicate significant life history divergence between naturalized and hatchery-stocked Chinook Salmon populations in Lake Michigan. Although historical changes in adult sex ratio were correlated with the proportion of naturalized individuals, changes in weight at maturity were better explained by density-dependent factors. The field study revealed no divergence in fecundity, timing of spawning, or size at maturity, and only small differences in egg size (hatchery > naturalized). For the near future, our results suggest that the limited life history differences observed between Chinook Salmon of naturalized and hatchery origin will not lead to large differences in characteristics important to the dynamics of the population or fishery.

Lake Michigan↗

USGS2014

Guidelines for use of fishes in research: Revised and expanded

The Guidelines for the Use of Fishes in Research (2014; 2014 Guidelines ), now available through the American fisheries Society (AFS) website and in print from the AFS bookstore, is a resource to aid researchers and regulatory authorities regarding responsible, scientifically valid research on fish and aquatic wildlife. The Guidelines for the Use of Fishes in Field Research (American Society of Ichthyologists and Herpetologists [ASIH] et al. 1987, 1988) emphasized field research and was followed by the 2004 Guidelines including laboratory research topics. Each version of the Guidelines has been jointly endorsed and/or published by the ASIH, the American Institute of Fishery Research Biologists (AIFRB), and AFS--each focusing on the scientific understanding, global conservation, and sustainability of aquatic animals, fisheries, and ecosystems. Changes with time necessitate revisions to make the Guidelines consistent with contemporary practices and scientific literature so to remain relevant as a technical resource. This document provides not only general principles relevant for field and laboratory research endeavors but includes specific requirements for researchers working within the United States and outside of the country. Within the scope of their expertise, the 2014 Uses of Fishers in Research (UFR) Committee members updated and revised sections, resulting in a 90-page 2014 Guidelines having undergone through peer review. As before, topical areas were addressed (see Table of Contents on page 416). Expanded coverage was provided on U.S. and international agencies and programs relevant to research with fishes. The Surgical Procedures and the Marking and Tagging section received special focus by a UFR Subcommittee. Feeds and Feeding and the Administration of Drugs, Biologics and Other Chemicals are just some of the newly added topics. The 2014 Guidelines is user-friendly by way of hyperlinks to external Internet sites, intradocument sections, and tables of acronyms with corresponding terms, low regulatory priority drugs, and Office of International des Epizooties notifiable disease agents. Again, the Institutional Animal Care and Use Committee (IACUC) role is explained, expectations for research are provided, and a brief checklist for IACUC readiness is included. Overall, the ,i>2014 Guidelines is the taxon-specific resource for our professional societies and is a principal document for standards on the care and use of fish and aquatic vertebrates in research.

Fisheries↗

USGS2016

Who Knew? Inconnu

In 1999, I moved to Alaska to serve as unit leader of the U.S. Geological Survey Alaska Cooperative Fish and Wildlife Research Unit and professor of fisheries in the School of Fisheries and Ocean Sciences at the University of Alaska Fairbanks. What was unusual about this move was that before this I was an easterner and southerner, having done my graduate work in fisheries at Texas A&M University and been stationed in the Coop Unit Program in Ohio, West Virginia, and Maryland. I had never worked with salmonids of any sort. To me fish with adipose fins also had whiskers! I suddenly found myself working in the land of salmon experts, and I didn't even reliably know the names—scientific, common, or colloquial—of the five (or is it six?) common Pacific salmon species in Alaska. I had to quickly find a research niche that probably didn't involve salmon.

Fisheries↗

USGS2016

Stakeholder views of management and decision support tools to integrate climate change into Great Lakes Lake Whitefish management

Decision support tools can aid decision making by systematically incorporating information, accounting for uncertainties, and facilitating evaluation between alternatives. Without user buy-in, however, decision support tools can fail to influence decision-making processes. We surveyed fishery researchers, managers, and fishers affiliated with the Lake Whitefish Coregonus clupeaformis fishery in the 1836 Treaty Waters of Lakes Huron, Michigan, and Superior to assess opinions of current and future management needs to identify barriers to, and opportunities for, developing a decision support tool based on Lake Whitefish recruitment projections with climate change. Approximately 64% of 39 respondents were satisfied with current management, and nearly 85% agreed that science was well integrated into management programs. Though decision support tools can facilitate science integration into management, respondents suggest that they face significant implementation barriers, including lack of political will to change management and perceived uncertainty in decision support outputs. Recommendations from this survey can inform development of decision support tools for fishery management in the Great Lakes and other regions.

Fisheries↗

USGS2017

Future of Pacific salmon in the face of environmental change: Lessons from one of the world's remaining productive salmon regions

Pacific salmon Oncorhynchus spp. face serious challenges from climate and landscape change, particularly in the southern portion of their native range. Conversely, climate warming appears to be allowing salmon to expand northwards into the Arctic. Between these geographic extremes, in the Gulf of Alaska region, salmon are at historically high abundances but face an uncertain future due to rapid environmental change. We examined changes in climate, hydrology, land cover, salmon populations, and fisheries over the past 30–70 years in this region. We focused on the Kenai River, which supports world-famous fisheries but where Chinook Salmon O. tshawytscha populations have declined, raising concerns about their future resilience. The region is warming and experiencing drier summers and wetter autumns. The landscape is also changing, with melting glaciers, wetland loss, wildfires, and human development. This environmental transformation will likely harm some salmon populations while benefiting others. Lowland salmon streams are especially vulnerable, but retreating glaciers may allow production gains in other streams. Some fishing communities harvest a diverse portfolio of fluctuating resources, whereas others have specialized over time, potentially limiting their resilience. Maintaining diverse habitats and salmon runs may allow ecosystems and fisheries to continue to thrive amidst these changes.

Alaska↗

USGS2025

On the importance and practical conservation of nongame fishes.

Fisheries management has historically focused conservation efforts on game or sport species. However, most species are nongame—those not traditionally captured for sport or harvest in countries where recreational fisheries predominate. Greater conservation of nongame species could help ensure that population declines do not go unnoticed. Unfortunately, fisheries managers already manage complex ecosystems with limited resources, and they frequently are directed to focus on game fishes. However, game fish populations can also be tightly coupled to nongame fishes, so nongame management can sometimes also benefit game species. We reviewed functional roles of freshwater nongame fishes and suggest categories that may be especially important for conservation. Of note, nongame fishes are more imperiled than game fishes and fill largely distinct functional roles. These roles include food-web impacts, ecosystem engineering, and mussel hosting. Management priorities could include nongame piscivores and species with high biomass, especially herbivores, nest builders, and imperiled mussel hosts. We provide practical options for including nongame fishes in current management, many of which require little additional funding. These include recognizing when sport fish funding and conservation can also benefit nongame species, whole-community sampling at some monitoring locations, collecting catch data for select species observed during game fish surveys, embracing environmental DNA sampling, and making presence–absence record keeping the default option.

Fisheries↗