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At least 613 records · Page 34Linked to original sources
USGS2012

Wetland hydrodynamics and long-term use of spring migration areas by lesser scaup in eastern South Dakota

Lesser scaup ( Aythya affinis [Eyton]) populations remain below their long-term average despite improved habitat conditions along spring migration routes and at breeding grounds. Scaup are typically associated with large, semipermanent wetlands and exhibit regional preferences along migration routes. Identifying consistently used habitats for conservation and restoration is complicated by irregular wetland availability due to the dynamic climate. We modeled long-term wetland use by lesser scaup in eastern South Dakota based on surveys conducted during below-average (1987-1989) and above-average (1993-2002) water condition years. Wetland permanence, longitude, and physiographic region were all significant determinants of use (P<0.01). Long-term use was best described by a quadratic equation including wetland surface area variability, an index of wetland hydrodynamics that is linked to productivity, biodiversity, and value to waterfowl. Contrary to previous findings, our study shows that over the long term, lesser scaup are more than twice as likely to use permanent wetlands as they are semipermanent wetlands. The northern region of South Dakota's Prairie Coteau, which holds the highest density of hydrologically dynamic permanent wetlands, should be considered an area of conservation concern for lesser scaup. The criteria we identified may be used to identify important lesser scaup habitats in other regions of the Prairie Pothole Region.

South Dakota↗
USGS2021

Widespread Ranavirus and Perkinsea infections in Cuban treefrogs (Osteopilus septentrionalis) invading New Orleans, USA

Invasive species can negatively impact ecosystems in numerous ways, including vectoring pathogenic organisms. In amphibians, a lineage globally threatened by multiple pathogens, this spread of disease via invasive species could contribute to declines in native populations. The Cuban Treefrog (Osteopilus septentrionalis) is invasive in the southeastern USA. To assess whether O. septentrionalis is a potential reservoir host for the pathogens Batrachochytrium dendrobatidis (Bd; Amphibian Chytrid Fungus), Ranavirus (Rv), and Perkinsea (Pr), we sampled 82 individuals from a recently invaded site in New Orleans, Louisiana, USA. We used quantitative PCR to assess prevalence and intensity of Bd, Rv, and Pr in mouthparts and tail clips from 22 larvae and in toe clips from 60 metamorphosed frogs. We compared infection prevalence and intensity across host characteristics, including Fulton’s Body Condition, sex, and life stage. None of the individuals were infected with Bd, 72% were infected with Rv, and 44% were infected with Pr. Twenty-three individuals (28%) were co-infected with Rv and Pr, but co-infection did not significantly predict the prevalence or intensity of either Rv or Pr. Although we did not observe any disease signs, Pr infections were significantly associated with lower body condition, suggesting sub-lethal fitness costs. Our study establishes that invasive O. septentrionalis in New Orleans are infected with two pathogens of global concern for amphibians. Understanding host-pathogen dynamics in O. septentrionalis in Louisiana is a critical step towards understanding how this invasive species could threaten amphibian biodiversity in the region by transmitting infectious pathogens.

Louisiana↗
USGS2020

A call for global action to conserve native trout in the 21st century and beyond

Trout and char (hereafter, trout ) represent some of the more culturally, economically and ecologically important taxa of freshwater fishes worldwide (Kershner, Williams, Gresswell, & Lobón‐Cerviá, 2019a ). Native to all continents in the Northern Hemisphere (as well as western Mediterranean Africa), trout belong to seven genera ( Oncorhynchus , Salvelinus, Salmo , Hucho, Parahucho, Brachymystax and Salvethymus ), which are distributed across more than 60 countries (Muhlfeld et al., 2019 ). Despite their broad importance as indicators of biodiversity in cold‐water ecosystems (Haak & Williams, 2013 ), as well as cultural icons for food and recreation, nearly half of the world's recognised trout species (IUCN, 2018 ) are imperilled or at risk of global extinction (Muhlfeld et al., 2018 , 2019 ). The root causes of their vulnerability include broad‐scale alteration of landscapes and watersheds, dams, overharvest, pollution, interactions with hatchery‐bred conspecifics and non‐native species. However, emerging threats such as climate change and related problems such as the spread of diseases and parasites pose significant challenges and uncertainties to native trout and their habitats (Kovach et al., 2016 ; Muhlfeld et al., 2018 ). Ultimately, conservation of native trout depends on understanding their diversity, a willingness to address threats at their root causes and implementing progressive conservation solutions that promote persistence of these iconic species in the face of growing human pressures.

Ecology of Freshwater Fish↗
USGS2019

Spatial sampling bias and model complexity in stream-based species distribution models: A case study of Paddlefish (Polyodon spathula) in the Arkansas River basin, USA

Leveraging existing presence records and geospatial datasets, species distribution modeling has been widely applied to informing species conservation and restoration efforts. Maxent is one of the most popular modeling algorithms, yet recent research has demonstrated Maxent models are vulnerable to prediction errors related to spatial sampling bias and model complexity. Despite elevated rates of biodiversity imperilment in stream ecosystems, the application of Maxent models to stream networks has lagged, as has the availability of tools to address potential sources of error and calculate model evaluation metrics when modeling in nonraster environments (such as stream networks). Herein, we use Maxent and customized R code to estimate the potential distribution of paddlefish ( Polyodon spathula ) at a stream-segment level within the Arkansas River basin, USA, while accounting for potential spatial sampling bias and model complexity. Filtering the presence data appeared to adequately remove an eastward, large-river sampling bias that was evident within the unfiltered presence dataset. In particular, our novel riverscape filter provided a repeatable means of obtaining a relatively even coverage of presence data among watersheds and streams of varying sizes. The greatest differences in estimated distributions were observed among models constructed with default versus AIC C -selected parameterization. Although all models had similarly high performance and evaluation metrics, the AIC C -selected models were more inclusive of westward-situated and smaller, headwater streams. Overall, our results solidified the importance of accounting for model complexity and spatial sampling bias in SDMs constructed within stream networks and provided a roadmap for future paddlefish restoration efforts in the study area.

Arkansas, Colorado, Kansas, Missouri, Nebraska, Ne↗
USGS2020

Calibrating environmental DNA metabarcoding to conventional surveys for measuring fish species richness

The ability to properly identify species present in a landscape is foundational to ecology and essential for natural resource management and conservation. However, many species are often unaccounted for due to ineffective direct capture and visual surveys, especially in aquatic environments. Environmental DNA metabarcoding is an approach that overcomes low detection probabilities and should consequently enhance estimates of biodiversity and its proxy, species richness. Here, we synthesize 37 studies in natural aquatic systems to compare species richness estimates for bony fish between eDNA metabarcoding and conventional methods, such as nets, visual census, and electrofishing. In freshwater systems with fewer than 100 species, we found eDNA metabarcoding detected more species than conventional methods. Using multiple genetic markers further increased species richness estimates with eDNA metabarcoding. For more diverse freshwater systems and across marine systems, eDNA metabarcoding reported similar values of species richness to conventional methods; however, more studies are needed in these environments to better evaluate relative performance. In systems with greater biodiversity, eDNA metabarcoding will require more populated reference databases, increased sampling effort, and multi-marker assays to ensure robust species richness estimates to further validate the approach. eDNA metabarcoding is reliable and provides a path for broader biodiversity assessments that can outperform conventional methods for estimating species richness.

Frontiers in Ecology and Evolution↗
USGS2021

Soil reservoir dynamics of ophidiomyces ophidiicola, the causative agent of snake fungal disease

Wildlife diseases pose an ever-growing threat to global biodiversity. Understanding how wildlife pathogens are distributed in the environment and the ability of pathogens to form environmental reservoirs is critical to understanding and predicting disease dynamics within host populations. Snake fungal disease (SFD) is an emerging conservation threat to North American snake populations. The causative agent, Ophidiomyces ophidiicola (Oo), is detectable in environmentally derived soils. However, little is known about the distribution of Oo in the environment and the persistence and growth of Oo in soils. Here, we use quantitative PCR to detect Oo in soil samples collected from five snake dens. We compare the detection rates between soils collected from within underground snake hibernacula and associated, adjacent topsoil samples. Additionally, we used microcosm growth assays to assess the growth of Oo in soils and investigate whether the detection and growth of Oo are related to abiotic parameters and microbial communities of soil samples. We found that Oo is significantly more likely to be detected in hibernaculum soils compared to topsoils. We also found that Oo was capable of growth in sterile soil, but no growth occurred in soils with an active microbial community. A number of fungal genera were more abundant in soils that did not permit growth of Oo, versus those that did. Our results suggest that soils may display a high degree of both general and specific suppression of Oo in the environment. Harnessing environmental suppression presents opportunities to mitigate the impacts of SFD in wild snake populations.

Journal of Fungi↗
USGS2026

Tropical and subtropical coral reefs

Global declines in coral cover persist, owing to increasing ocean temperatures associated with climate change, continued coastal development, pollution, sedimentation, diseases and the destruction and overextraction of marine resources (through fishing and coral harvesting). These stressors have an impact on coral biodiversity, reef-associated fauna and the architectural complexity of reef frameworks, compromising the food security and livelihoods of the millions of people who depend on these ecosystems (virtually certain, well established). The frequency and severity of disturbances caused by heatwaves, disease outbreaks and tropical storms have increased (virtually certain, established but incomplete), curtailing the recovery time between such disturbances. This pattern is projected to continue on its current trajectory (at best) or accelerate (very likely). The ecosystem services provided by coral reefs are substantial, not only in terms of biodiversity, but also in terms of direct economic benefits (including coastal protection, livelihoods for millions and nurseries for commercial species), as well as less tangible benefits, such as cultural and aesthetic (intrinsic) value (virtually certain, well established). Conservation, restoration and regeneration efforts are under way on a global scale, but few initiatives are implemented on a long-term, sustainable basis, with socioeconomic considerations, such as livelihoods, taken into account (virtually certain, well established). A wide range of approaches and tools is being developed, many of which are designed to mitigate or halt reef declines. These are often restricted to local reef-wide projects, however, and the potential for upscaling is sometimes criticized (unresolved). Documented results are also almost always undermined by a clear disconnect between these and other policy decisions, such as the extraction and burning of fossil fuels and coastal development (likely). Regardless of scalability concerns, all programmes need to be embedded within a broader evidence-based conservation framework. Global efforts are required to facilitate reef ecosystem survival and continued function by reducing emissions and ongoing climate change (virtually certain, established but incomplete). The reefs of today will not be the reefs of tomorrow (virtually certain) and shifting baselines need to be considered when setting objectives with respect to conservation, restoration and regeneration (virtually certain, established but incomplete).

Report↗
USGS2025

The scientific benefits of a statewide, standardized, coastal wetland monitoring program in Hawaiʻi

In this viewpoint, we provide a scientific justification for a statewide, standardized, coastal wetland monitoring program for Hawaiʻi, USA. Hawaiian coastal wetlands provide important habitat for endangered waterbirds, invertebrates, plants, and the Hawaiian hoary bat (ʻōpeʻapeʻa; Lasiurus semotus ) as well as support Indigenous food systems. Currently, numerous agencies and groups in Hawaiʻi collect data on coastal wetlands, but information is not typically shared and methods are not standardized. A statewide, standardized, coastal wetland monitoring program with a centralized database would allow managers to keep better track of progress toward restoration goals, population changes of conservation-reliant species, outbreaks and impacts of avian botulism, rates of coastal salinization, and many other critical issues across space and time. Monitoring combined with targeted research could fill critical knowledge gaps about the types, functions, values, and biodiversity of Hawaiian coastal wetlands. Ultimately, the improved knowledge gained from long-term coastal wetland monitoring could inform landscape-scale restoration actions and adaptive management of coastal wetlands under sea-level rise and climate change.

Hawaii↗
USGS2024

From eDNA to decisions using a multi-method approach to restoration planning in streams

Reintroduction efforts are increasingly used to mitigate biodiversity losses, but are frequently challenged by inadequate planning and uncertainty. High quality information about population status and threats can be used to prioritize reintroduction and restoration efforts and can transform ad hoc approaches into opportunities for improving conservation outcomes at a landscape scale. We conducted comprehensive environmental DNA (eDNA) and visual encounter surveys to determine the distribution of native and non-native aquatic species in two high-priority watersheds to address key uncertainties—such as the distribution of threats and the status of existing populations—inherent in restoration planning. We then used these occurrence data to develop a menu of potential conservation actions and a decision framework to benefit an endangered vertebrate (foothill yellow-legged frog, Rana boylii ) in dynamic stream systems. Our framework combines the strengths of multiple methods, allowing managers and conservation scientists to incorporate conservation science and site-specific knowledge into the planning process to increase the likelihood of achieving conservation goals.

Scientific Reports↗
USGS2013

Rediscovering traditional vegetation management in preserves: trading experiences between cultures and continents

Land managers are grappling with massive changes in vegetation structure, particularly in protected areas formerly subjected to fire and grazing. The objective of this review was to compare notes on the historical and current management of ecosystems around the world (especially in wet to dry grasslands in the Americas, Australia, Africa, Europe and Asia) with respect to the usage of fire, grazing and cutting to reduce dominance and support the biodiversity of rare species. This review suggests that former disturbances, which are now often lost, may have once kept tall vegetation from pushing out rarer subdominant species. In cases where prehistoric biodiversity depended on fire or large ungulate grazing, traditional agricultural and indigenous practices may have carried biodiversity forward to historical times by mimicking pre-cultural disturbances (e.g., lightning fire and bison grazing). Ironically, biodiversity related to species richness, landscape heterogeneity and function may decline in preserves, especially if traditional management once maintained this biodiversity. Managers can benefit from a cross-continental comparison of the full arsenal of management techniques used to control encroaching vegetation.

Biological Conservation↗
USGS2021

Quantifying the representation of plant communities in the protected areas of the U.S.: An analysis based on the U.S. National Vegetation Classification Groups

Plant communities represent the integration of ecological and biological processes and they serve as an important component for the protection of biological diversity. To measure progress towards protection of ecosystems in the United States for various stated conservation targets we need datasets at the appropriate thematic, spatial, and temporal resolution. The recent release of the LANDFIRE Existing Vegetation Data Products (2016 Remap) with a legend based on U.S. National Vegetation Classification allowed us to assess the conservation status of plant communities of the U.S. The map legend is based on the Group level of the USNVC, which characterizes the regional differences in plant communities based on dominant and diagnostic plant species. By combining the Group level map with the Protected Areas Database of the United States (PAD-US Ver 2.1), we quantified the representation of each Group. If the mapped vegetation is assumed to be 100% accurate, using the Aichi Biodiversity target (17% land in protection by 2020) we found that 159 of the 265 natural Groups have less than 17% in GAP Status 1 & 2 lands and 216 of the 265 Groups fail to meet a 30% representation target. Only four of the twenty ecoregions have >17% of their extent in Status 1 & 2 lands. Sixteen ecoregions are dominated by Groups that are under-represented. Most ecoregions have many hectares of natural or ruderal vegetation that could contribute to future conservation efforts and this analysis helps identify specific targets and opportunities for conservation across the U.S.

Forests↗
USGS2026

Influence of new residential construction varying in housing density on bird species, human tolerance guilds, and communities

Human population growth and changing settlement patterns fuel the development of urban fringe lands worldwide, with implications for biodiversity. We conducted a 12-year study of birds in the fast-developing urban fringe lands of the central Puget Sound region, Washington, USA, to examine the effect of development configuration on birds. We hypothesized that lower-intensity conservation developments, compared to higher-intensity planned community developments, would benefit the overall bird community, as well as native forest birds (avoiders of human development) and avian generalist species (adapters to human development), but that higher-intensity planned community developments would benefit synanthropic species (exploiters of human development). We fit single-species and multi-species occupancy models to test these hypotheses. Consistent with our hypotheses, we found that a greater proportion of the overall community, avoiders, and adapters occupied lower-intensity conservation developments compared to higher-intensity planned community developments. However, we did not detect an effect of development type on the exploiter guild, and we found that species in the exploiter guild are variable in their response to the configuration of suburban developments. We also hypothesized that human tolerance guilds would be a useful predictor of individual species responses to development type. This hypothesis was somewhat supported: we found that, for avoiders, 87% of species in the guild had the same response to development type as the overall guild; for adapters, 63% had the same response as the overall guild, and for exploiters, only 44% had the same response as the overall guild. Our results indicate that the configuration of suburban developments can have a meaningful impact on bird communities, particularly on those species that are most sensitive to any level of development.

Washington↗
USGS2024

Quantifying intraspecific variation in host resistance ad tolerance to a lethal pathogen

Testing for intraspecific variation for host tolerance or resistance in wild populations is important for informing conservation decisions about captive breeding, translocation, and disease treatment. Here, we test the importance of tolerance and resistance in multiple populations of boreal toads ( Anaxyrus boreas boreas ) against Batrachochytrium dendrobatidis (Bd), the amphibian fungal pathogen responsible for the greatest host biodiversity loss due to disease. Boreal toads have severely declined in Colorado (CO) due to Bd, but toad populations challenged with Bd in western Wyoming (WY) appear to be less affected. We used a common garden infection experiment to expose post-metamorphic toads sourced from four populations (2 in CO and 2 in WY) to Bd and monitored changes in mass, pathogen burden and survival for 8 weeks. We used a multi-state modelling approach to estimate weekly survival and transition probabilities between infected and cleared states, reflecting a dynamic infection process that traditional approaches fail to capture. We found that WY boreal toads are more tolerant to Bd infection with higher survival probabilities than those in CO when infected with identical pathogen burdens. WY toads also appeared more resistant to Bd with a higher probability of infection clearance and an average of 5 days longer to reach peak infection burdens. Our results demonstrate strong intraspecific differences in tolerance and resistance that likely contribute to why population declines vary regionally across this species. Our multi-state framework allowed us to gain inference on typically hidden disease processes when testing for host tolerance or resistance. Our findings demonstrate that describing an entire host species as ‘tolerant’ or ‘resistant’ (or lack thereof) is unwise without testing for intraspecific variation.

Colorado, Wyoming↗
USGS2009

Processes of wetland loss in India

Wetlands in India supply crucial human and animal needs such as drinking water, protein production, fodder, water purification, wildlife habitat, and flood storage. Increased appreciation of uses and threats is essential to protect wetlands where justified. Three quarters of India's population is rural, it places great demands on India's wetlands and losses continue to occur. This paper is based on extensive discussions with natural resource managers, government employees, farmers, academicians, and resource users at dozens of sites in India, as well as an extensive literature search. Twelve important kinds of wetland loss are identified and mechanisms believed to be causing them discussed: (1) agricultural conversion, (2) direct deforestation, (3) hydrologie alteration, (4) inundation, (5) defoliation, (6) altered upper watersheds, (7) accumulative water demands, (8) water quality degradation, (9) wetland consolidation, (10) global climate change, (11) ground-water depletion, (12) exotic species and biodiversity. Wetland understanding, management, and Public awareness in India must continue growing if wetland resources are to remain functional.

Environmental Conservation↗
USGS2021

Intensity of grass invasion negatively correlated with population density and age structure of an endangered dune plant across its range

Invasive species are a global threat to ecosystem biodiversity and function; non-native grass invasion has been particularly problematic in sparsely vegetated ecosystems such as open dunes. Native plant population responses to invasion, however, are infrequently translated to landscape scales, limiting the effectiveness of these data for addressing conservation issues. We quantified population density, total population size, and age class distribution of the federally-endangered plant species Antioch Dunes evening primrose ( Oenothera deltoides subsp. howellii ), at sites along a non-native grass invasion gradient in California, USA. We then scaled relationships between invasion and plant density across the species’ range using spatial models and remote sensing data. Adult and juvenile O. deltoides subsp. howellii densities were more than 10 times higher in non-invaded areas (grids with 10% total plant cover) when compared to highly-invaded areas (grids with 80% total plant cover). The ratio of O. deltoides subsp. howellii juveniles to adults decreased to less than 1 at 54% total cover, highlighting sensitivity of the regeneration niche to invasion. Spatial models mapped hotspots of O. deltoides subsp. howellii abundance and population structure across the landscape at sub-meter scales. Scaling the impacts of increasing invasion on plant species of conservation concern holds promise when coupled with remote sensing approaches, especially in naturally low-cover ecosystems where readily available metrics (e.g., Normalized Difference Vegetation Index) can be used to quantify invasion. These spatial models inform how future invasive species management may influence population size and spatial distribution of species of conservation concern.

California↗
USGS2001

Status of the world's remaining closed forests: An assessment using satellite data and policy options

Historically, it appears that some of the WRCF have survived because i) they lack sufficient quantity of commercially valuable species; ii) they are located in remote or inaccessible areas; or iii) they have been protected as national parks and sanctuaries. Forests will be protected when people who are deciding the fate of forests conclude than the conservation of forests is more beneficial, e.g. generates higher incomes or has cultural or social values, than their clearance. If this is not the case, forests will continue to be cleared and converted. In the future, the WRCF may be protected only by focused attention. The future policy options may include strategies for strong protection measures, the raising of public awareness about the value of forests, and concerted actions for reducing pressure on forest lands by providing alternatives to forest exploitation to meet the growing demands of forest products. Many areas with low population densities offer an opportunity for conservation if appropriate steps are taken now by the national governments and international community. This opportunity must be founded upon the increased public and government awareness that forests have vast importance to the welfare of humans and ecosystems' services such as biodiversity, watershed protection, and carbon balance. Also paramount to this opportunity is the increased scientific understanding of forest dynamics and technical capability to install global observation and assessment systems. High-resolution satellite data such as Landsat 7 and other technologically advanced satellite programs will provide unprecedented monitoring options for governing authorities. Technological innovation can contribute to the way forests are protected. The use of satellite imagery for regular monitoring and Internet for information dissemination provide effective tools for raising worldwide awareness about the significance of forests and intrinsic value of nature.

Ambio↗
USGS2012

The shallow-water fish assemblage of Isla del Coco National Park, Costa Rica: Structure and patterns in an isolated, predator-dominated ecosystem

Fishes at Isla del Coco National Park, Costa Rica, were surveyed as part of a larger scientific expedition to the area in September 2009. The average total biomass of nearshore fishes was 7.8 tonnes per ha, among the largest observed in the tropics, with apex predators such as sharks, jacks, and groupers accounting for nearly 40% of the total biomass. The abundance of reef and pelagic sharks, particularly large aggregations of threatened species such as the scalloped hammerhead shark (up to 42 hammerheads ha-1) and large schools of jacks and snappers show the capacity for high biomass in unfished ecosystems in the Eastern Tropical Pacific. However, the abundance of hammerhead and reef whitetip sharks appears to have been declining since the late 1990s, and likely causes may include increasing fishing pressure on sharks in the region and illegal fishing inside the Park. One Galapagos shark tagged on September 20, 2009 in the Isla del Coco National Park moved 255km southeast towards Malpelo Island in Colombia, when it stopped transmitting. These results contribute to the evidence that sharks conduct large-scale movements between marine protected areas (Isla del Coco, Malpelo, Galápagos) in the Eastern tropical Pacific and emphasize the need for regional-scale management. More than half of the species and 90% of the individuals observed were endemic to the tropical eastern Pacific. These high biomass and endemicity values highlight the uniqueness of the fish assemblage at Isla del Coco and its importance as a global biodiversity hotspot.

Cocos Island, Isla Del Coco↗
USGS2022

Freshwater unionid mussels threatened by predation of Round Goby (Neogobius melanostomus)

Indigenous freshwater mussels (Unionidae) are integral to riverine ecosystems, playing a pivotal role in aquatic food webs and providing ecological services. With populations on the decline worldwide, freshwater mussels are of conservation concern. In this study, we explore the propensity of the invasive Round Goby (Neogobius melanostomus) fish to prey upon indigenous freshwater mussels. First, we conducted lab experiments where Round Gobies were given the opportunity to feed on juvenile unionid mussels and macroinvertebrates, revealing rates and preferences of consumption. Several Round Gobies consumed whole freshwater mussels during these experiments, as confirmed by mussel counts and x-ray images of the fishes. Next, we investigated Round Gobies collected from stream habitats of the French Creek watershed, which is renowned for its unique and rich aquatic biodiversity. We developed a novel DNA metabarcoding method to identify the specific species of mussels consumed by Round Goby and provide a new database of DNA gene sequences for 25 indigenous unionid mussel species. Several of the fishes sampled had consumed indigenous mussels, including the Elktoe (non-endangered), Creeper (non-endangered), Long Solid (state endangered), and Rayed Bean (federally endangered) species. The invasive Round Goby poses a growing threat to unionid mussels, including species of conservation concern. The introduction of the invasive Round Goby to freshwaters of North America is shaping ecosystem transitions within the aquatic critical zone having widespread implications for conservation and management.

Maryland, New York, Pennsylvania, West Virginia↗