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USGS1978

Description of CRIB, the GIPSY retrieval mechanism, and the interface to the General Electric MARK III Service : CRIB, the mineral resources data bank of the U.S. Geological Survey--guide for public users, 1977

The U.S. Geological Survey's Computerized Resources Information Bank (CRIB) is being made available for public use through the computer facilities of the University of Oklahoma and the General Electric Company, U.S.A. The use of General Electric's worldwide information-services network provides access to the CRIB file to a worldwide clientele. This manual, which consists of two chapters, is intended as a guide to users who wish to interrogate the file. Chapter A contains a description of the CRIB file, information on the use of the GIPSY retrieval system, and a description of the General Electric MARK III Service. Chapter B contains a description of the individual data items in the CRIB record as well as code lists. CRIB consists of a set of variable-length records on the metallic and nonmetallic mineral resources of the United States and other countries. At present, 31,645 records in the master file are being made available. The record contains information on mineral deposits and mineral commodities. Some topics covered are: deposit name, location, commodity information, description of deposit, geology, production, reserves, potential resources, and references. The data are processed by the GIPSY program, which maintains the data file and builds, updates, searches, and prints the records using simple yet versatile command statements. Searching and selecting records is accomplished by specifying the presence, absence, or content of any element of information in the record; these specifications can be logically linked to prepare sophisticated search strategies. Output is available in the form of the complete record, a listing of selected parts of the record, or fixed-field tabulations. The General Electric MARK III Service is a computerized information services network operating internationally by land lines, satellites, and undersea cables. The service is available by local telephone to 500 cities in North America, Western Europe, Australia, Southeast Asia, Japan, and Saudi Arabia. An interface called the 'foreground driver' is used to link the GIPSY program to the General Electric system.

Circular↗
USGS2021

Cape Romain partnership for coastal protection

This final report summarizes activities, outcomes, and lessons learned from a 3-year project titled “Climate Change Adaptation for Coastal National Wildlife Refuges” with the Cape Romain National Wildlife Refuge (NWR) and local partners in the surrounding South Carolina Lowcountry. The Lowcountry is classified as the 10-county area encompassing the coastal plain of South Carolina (this report specifically focuses on Berkeley, Charleston, and Georgetown Counties). The goals of this work, sponsored by the U.S. Geological Survey’s Southeast Climate Adaptation Science Center (SECASC), were to foster active engagement with stakeholders; to develop a comprehensive definition of adaptation problems faced by agencies, organizations, and individuals near the Cape Romain NWR that accounts for global change, local values, knowledge and perceptions; and to encourage social learning and building of effective networks and trust across South Carolina Lowcountry organizations and individuals. Although project scoping began at the scale of the Atlantic seaboard, by engaging with NWRs from Massachusetts to Florida, participating refuge personnel eventually selected the Cape Romain NWR to serve as a case study for testing our goals. The Cape Romain Partnership for Coastal Conservation was established to address global change impacts at a regional level and includes representation from Federal and State resource agencies, local conservation nongovernmental organizations, and organizations representing underserved community interests. Research topics, originating from discussions with Cape Romain Partnership for Coastal Conservation members, focused on quantifying key drivers of change including localized sea-level rise (SLR) predictions, estimates of coastal hurricane inundation as amplified by SLR, and urban growth trends and forecasts. These key drivers provided a foundation to engage stakeholders in planning exercises to begin a process of collective understanding and collaborative decision making. The goal of this process was to develop collective strategies of adaptation to enhance community and ecosystem resilience in the South Carolina Lowcountry. South Carolina’s Lowcountry is experiencing rapid environmental and social transformation because of SLR rates approaching twice the global average, chronic tidal flooding and catastrophic storm surges, erosion and loss of habitats that provide essential services to wildlife and humans, and increasing social polarization fueled by aggressive low-density urban growth and other forms of land conversion. To support characterizations of plausible future scenarios, we used available or, in some cases, developed new models to project future conditions of key environmental and social-economic drivers. Because of the imprecision of mean global SLR projections, the SECASC commissioned a climatological study to account for local conditions and multiple representative concentration pathways to project a tailored distribution of future sea levels. These projections were matched to SLR scenarios provided by existing models to anticipate the range of future coastal habitat changes in the South Carolina Lowcountry. SLR scenarios were also incorporated into existing storm-surge models, which do not account for alternate baseline sea levels, to project the local effects of future hurricanes. To evaluate the extent and effects of population growth and urban expansion, we relied on an existing urban-growth model to map the spatial distribution of land-conversion probabilities, the total area of which is predicted to increase twofold to threefold over the next 60 years. In addition to this simplified model, an econometric model is in development to account for nonlinear feedback dynamics in land value, land use, and ecosystem service production. Although not yet completed, the goals of this model are to produce more-detailed projections of growth dynamics and to allow predictions of development patterns resulting from alternate land-use planning policies and incentives. Collaborative planning for an uncertain future requires more than providing decision makers with information on future physical and ecological conditions; developing effective and consensual strategies must also integrate sociological values, multiple cultural perspectives, and an understanding of human behavior. To support broad stakeholder engagement in integrative approaches to adaptation planning, emphasis was placed on the importance of considering differences in how individuals perceive their environment and create meaning. Because cultural frameworks form the basis for perceptions and, ultimately, the behaviors of individuals and institutions, we describe a model of human behavior and how it can be used to understand the effect of cultural complexity and variation in perception on choices, behavioral change, and long-term maintenance of behaviors. We consider a model commonly used in the field of behavioral health that accommodates variation in human perception when describing stages of behavior and the dynamics of behavioral change. Tailoring communication and engagement activities to targeted stakeholders is likely to benefit from increased understanding of behavioral change processes. The complex nature of this problem limited the usefulness of a traditional decision-analytic approach, we explored alternative methods for engagement, collaborative learning and decision making. Recognizing that project partners and Lowcountry stakeholders may be at different stages of preparedness and interest level for modifying behavior as a function of global change, we facilitated a scenario-planning exercise to familiarize partners with this well-established approach for communicating the opportunities and threats arising under alternative, plausible futures. We developed narratives for four alternative South Carolina Lowcountry scenarios to be used in later strategic planning that focus on quantitative trends for three primary drivers with high impact and high uncertainty: manifestations of climate change, social-political shifts at a global level, and forces of local value and power structures. This scenario-planning exercise underscored the complex relation between the temporospatial scale of the production of ecological goods and services and the institutional scale at which they are managed. We then guided the partners through an assessment of the relevant strengths and weaknesses of the Cape Romain Partnership for Coastal Protection, using the threats and opportunities characterized by each scenario to understand how the partnership might respond when attempting to meet conservation and societal objectives. The partnership identified key strengths including partnership experience, outreach and technical capacities, a substantial conservation land base, and high social cohesion in the South Carolina Lowcountry. Limited communication expertise, institutional inertia, and insufficient staffing and funding were recognized as important weaknesses across the partnership. By examining and scoring combinations of internal strengths and weaknesses and external threats and opportunities, the partnership developed sets of prioritized strategies to consider in the context of a given scenario. Although we had insufficient time to examine all scenarios in detail, the intent was to identify a portfolio of strategic actions to address threats and opportunities represented in multiple plausible futures. Top-ranking strategies encompassed a range of actions that focused on strengthening the conservation community and communicating the benefits of nature (that is, ecosystem services) to leveraging partnerships to expand land protection. This report also details the methods and preliminary results of several models developed or applied in support of this project. Two parcel-selection algorithms were used to evaluate anticipated habitat changes and patterns of urban growth to guide decisions on optimal conservation reserve design to protect habitat communities. One approach used a widely available planning software (MARXAN) to maximize conservation benefits near the Cape Romain NWR, whereas the other approach was a novel application of economic theory to account for uncertainty in future conditions and for the risks of unanticipated habitat loss. This latter model applies modern portfolio theory to estimate the risk of investing in any portfolio of land parcels (that is, candidate “reserves”) under climate-change uncertainty by quantifying the variation and spatial correlation of conservation benefits derived from each portfolio. We expanded the range of actions beyond simply whether or not to invest in a set of land parcels, an approach commonly used in spatial conservation planning, to also include consideration of divestment from currently protected lands. Such refinements allow for better accounting of system dynamics and can evaluate the benefits of flexible conservation tools such as rolling easements. Model results were conditional on a decision maker’s risk tolerance but highlighted general strategies of land conservation to increase future habitat representation beyond what is expected under the current protected land base. We built models that may help inform coastal planning by estimating salinity dynamics and the performance of oyster reef restoration efforts to predict the combined effects of global change and management of freshwater flows on coastal habitats and the processes that contribute to their resilience. These models can support restoration decisions by evaluating the expected benefits of site locations for shoreline protection and fisheries production. Lastly, we developed a spatially explicit economic model that predicts feedback dynamics among land value, land-use change, and effects on ecosystem service provision to explore zoning policies and incentives on urban growth and ecosystem services. We summarize these efforts with insights and considerations for the Cape Romain Partnership for Coastal Protection to continue to engage stakeholders in effective adaptation planning. First, notions of place attachment (referred to as sense of place), and the role of culture in social discourse are increasingly being used to understand the complex interactions between society and the environment and how societies respond and adapt to climate change. Sense of place was a unifying theme whenever the future of the South Carolina Lowcountry was discussed. The contribution of the South Carolina Lowcountry’s environmental wealth, rich cultural heritage, and quality of life to sense of place has important implications for how adaptation planning might best be pursued. More community-based governance of the commons (in other words, natural and cultural resources held in common), in which broad stakeholder participation and power sharing are key elements, is considered important. This devolution of governance is characterized by polycentric institutions and self-organizing social networks that promote a local culture of knowledge sharing, problem solving, and learning. These so-called bridging organizations (or individuals) often provide the leadership necessary to bring together potentially disparate Government agencies and institutions, private organizations, and individuals in a collective process of problem solving. Our observations also suggest that the conservation community in the South Carolina Lowcountry views its activities as integral to the broader governance of social-ecological systems, in which responses to the forces of global change are mediated through culture, economics, and politics. Rather than directly competing with other interests, the South Carolina Lowcountry conservation community seems to embrace an interpretation of conservation in which the fundamental objective is the quality of human life rather than environmental protection. Fundamental to the types of governance reforms described above is the notion of coproduction, in which experts and users collaborate to develop a shared body of knowledge. In this approach, scientists work with stakeholders to help frame questions, design research, and collect and analyze data. Such sustained collaborations are increasingly believed to be an effective way to produce useable (or actionable) science. The emphasis on social learning, leveraging strong social networks, coordinating and deliberating among diverse stakeholders, and applying principles of adaptive management is an essential contribution to adaptive capacity. The diverse and robust set of scientific approaches, methods to help stakeholders collaborate in effective and goal-driven planning processes, and decision tools resulting from this project hopefully will assist Cape Romain NWR and its partners prepare for climatic, ecological, and social changes over the coming decades.

South Carolina↗
USGS2011

Monitoring plan for vegetation responses to elk management in Rocky Mountain National Park

Rocky Mountain National Park (RMNP) in north-central Colorado supports numerous species of wildlife, including several large ungulate species among which Rocky Mountain elk (Cervus elaphus) are the most abundant. Elk are native to RMNP but were extirpated from the area by the late 1800s. They were reintroduced to the area in 1913-1914, and the elk herd grew to the point that it was actively managed from 1944 until 1968. In 1969, the active control of elk was discontinued and since then the herd has increased to a high point ranging from 2,800 to 3,500 between 1997 and 2001. In recent years, there has been growing concern over the condition of vegetation in the park and conflicts between elk and humans, both inside and outside the park. In response to these concerns, RMNP implemented an Elk and Vegetation Management Plan (EVMP) in 2009 to guide management actions in the park over a 20-year time period with the goal of reducing the impacts of elk on vegetation and restoring the natural range of variability in the elk population and affected plant and animal communities. The EVMP outlines the desired future condition for three vegetation communities where the majority of elk herbivory impacts are being observed: aspen, montane riparian willow, and upland herbaceous communities. The EVMP incorporates the principle of adaptive management whereby the effectiveness of management actions is assessed and adjusted as needed to successfully achieve objectives. Determination of whether vegetation objectives are being achieved requires monitoring and evaluation of target vegetation communities. The current report describes the design and implementation of a vegetation-monitoring program to help RMNP managers assess the effectiveness of their management actions and determine when and where to alter actions to achieve the EVMP's vegetation objectives. This monitoring plan details the process of selecting variables to be monitored, overall sampling design and structure, site selection, data collection methods, and statistical analyses to be used to conduct this monitoring program in conjunction with the EVMP. We report the baseline conditions observed at the time of the establishment of monitoring sites. We include detailed field protocols for site establishment and data collection, as well as timetables for sampling, so that RMNP staff will be able to continue monitoring the sites established during this implementation stage, and continue to add new sites when necessary, as the execution of the EVMP proceeds over the next 20 years.

Colorado↗
USGS2024

Introduction to recommended capabilities and instrumentation for volcano monitoring in the United States

Introduction The National Volcano Early Warning System (NVEWS) was authorized and partially funded by the U.S. Government in 2019. In response, the U.S. Geological Survey (USGS) Volcano Hazards Program asked its scientists to reflect on and summarize their views of best practices for volcano monitoring. The goal was to review and update the recommendations of a previous report (Moran and others, 2008) and to provide a more detailed analysis of capabilities and instrumentation for monitoring networks for U.S. volcanoes. This Scientific Investigations Report and its chapters reflect those USGS scientists’ views and summaries and will serve as a guide for future network upgrades funded through NVEWS. Given the well-documented hazards posed by volcanoes to population centers and aviation (for example, Blong, 1984; Scott, 1989; Neal and others, 1997, 2019; Guffanti and others, 2010; Shroder and Papale, 2014; Prata and Rose, 2015; Palmer, 2020), volcano monitoring is critical for ensuring public safety and for mitigating the impacts of volcanic activity. Accurate and timely forecasts are facilitated by well-designed monitoring networks that are in place long enough to allow for background behavior to be recognized and understood. Because precursory signals may be limited and unrest may progress rapidly to an eruption, our goal is to deploy monitoring systems that enable detection of the reactivation of dormant volcanoes as early as possible, allowing for public safety and risk mitigation. NVEWS planning is also informed by the results of Ewert and others (2005, 2018), whereby 161 U.S. volcanoes are currently categorized and ranked commensurate with their relative threat. In each chapter, author(s) considered the need for some redundancy of instrumentation and telemetry, given the likelihood of occasional equipment failure, particularly in extreme and remote environments. Establishing digital telemetry networks requires advanced planning, sighting, radio-shot testing, and, inevitably, troubleshooting in the field. This is harder to achieve rapidly during a crisis; thus, an important goal for monitoring U.S. volcanoes is to establish digital telemetry backbones with redundancy and extra capacity to absorb additional instruments should a volcano begin to exhibit signs of unrest (fig. A1). The National Telecommunications and Information Administration (NTIA) imposed new regulations in the United States, eliminating the use of older analog radios for many purposes, which had been one previous means for redundant data delivery. However, the resulting conversion from analog to digital systems usefully enables stations to accommodate new and multivariate real-time data streams (for example, Global Navigation Satellite System [GNSS] receivers, infrasound arrays, gas spectrometers, visible and infrared cameras, and broadband seismometers). We note that other USGS and broader national and international hazard programs can leverage NVEWS instrumentation plans. Examples of this include the following: Improved seismic coverage of volcanoes will increase the capability of the USGS Earthquake Hazards Program to detect and locate earthquakes, estimate ground shaking, and provide timely early warnings through the ShakeAlert Earthquake Early Warning System (Given and others, 2018). The National Oceanic and Atmospheric Administration’s Tsunami Program will benefit from additional seismic stations, particularly within the sparsely instrumented Aleutian Islands, Northern Mariana Islands, and American Samoa. Infrasound stations can detect signals from landslides, debris flows and lahars, floods, and weather events, providing benefits to the National Weather Service and the USGS Landslide Hazards Program.

Scientific Investigations Report↗
USGS2005

Sedimentology and stratigraphy of the Palisades, Lower Comanche, and Arroyo Grande areas of the Colorado River Corridor, Grand Canyon, Arizona

This report analyzes various depositional environments in three archaeologically significant areas of the Colorado River corridor in Grand Canyon. Archaeological features are built on and buried by fluvial, aeolian, and locally derived sediment, representing a complex interaction between geologic and cultural history. These analyses provide a basis for determining the potential influence of Glen Canyon Dam operations on selected archaeological sites and thus for guiding dam operations in order to facilitate preservation of cultural resources. This report presents initial results of a joint effort between geologists and archaeologists to evaluate the significance of various depositional processes and environments in the prehistoric formation and modern preservation of archaeological sites along the Colorado River corridor in Grand Canyon National Park. Stratigraphic investigations of the Palisades, Lower Comanche, and Arroyo Grande areas of Grand Canyon yield detailed information regarding the sedimentary history at these locations. Reconstruction of past depositional settings is critical to a thorough understanding of the geomorphic and stratigraphic evolution of these three archaeologically significant areas. This examination of past sedimentary environments allows the relative significance of fluvial, aeolian, debris-fan, and slope-wash sedimentary deposits to be identified at each site. In general the proportion of fluvial sediment (number and thickness of flood deposits) is shown to decrease away from the river, and locally derived sediment becomes more significant. Flood sequences often occur as 'couplets' that contain a fluvial deposit overlain by an interflood unit that reflects reworking of fluvial sediment at the land surface by wind and local runoff. Archaeological features are built on and buried by sediment of various depositional environments, implying a complex interaction between geologic and cultural history. Such field analysis, which combines geological and archaeological information and techniques, can provide a basis for future determination of the effects of Glen Canyon Dam operations on selected areas of the river corridor. This knowledge is essential to the development of preservation strategies for cultural resources in Grand Canyon.

Scientific Investigations Report↗
USGS2022

Forecasting and communicating the dispersion and fallout of ash during volcanic eruptions: lessons from the September 20, 2020 eruptive pulse at Sangay volcano, Ecuador

Volcanic ash is a hazard to human health and activities. Accurate and timely forecasts coupled with effective communication about the dispersion and fallout of volcanic ash during explosive events are essential to reduce impacts on local communities and limit economic losses. In this study, we present the first detailed description of an eruptive pulse at Sangay volcano and its eruption source parameters. The eruptive pulse on September 20, 2020, started at about 9:20 UTC and lasted between 90 and 100 min, producing an eruptive column that rapidly separated into (1) a higher (15.2 km above sea level, asl), gas-rich cloud moving east-southeast and (2) a lower (12.2 km asl), ash-rich cloud moving west and causing ash fallout up to 280 km from the volcano. Field data collected immediately after the event allow estimating the volume of bulk tephra to be between 1.5 and 5.0 × 10 6 m 3 , corresponding to a volcanic explosivity index of 2. The eruptive pulse, identified as violent Strombolian, emitted andesitic ash that was more mafic than products ejected by Sangay volcano in recent decades. Component analysis and glass chemistry of juvenile particles support the hypothesis that this event excavated deeper into the upper conduit compared to typical Strombolian activity at Sangay volcano, while grain-size analysis allows reconstruction of the total grain-size distribution of the fallout deposit. The discrepancies between the ash fallout simulations performed with the Ash3D online tool and the actual deposit are mainly the result of inaccurate pre- and syn-eruptive configurations and highlight the importance of additional processes such as aggregation. Communication products issued during the event included (1) several standard short reports, (2) volcano observatory notices for aviation, (3) social media posts, and (4) a special report providing the results of the ash fallout simulation. Although communication was effective with the authorities and the connected population, an effort must be made to reach the most vulnerable isolated communities for future events. This study shows that forecasting ash dispersion and fallout during volcanic eruptions can guide early warnings and trigger humanitarian actions, and should become a standard in volcano observatories worldwide.

Sangay volcano↗
USGS2018

Distribution, habitat, and population size of Island Night Lizards on San Nicolas Island, California

The Island Night Lizard ( Xantusia riversiana ) was removed from the federal list of threatened species in May 2014. This strongly differentiated species is endemic to 3 of the southern California Channel Islands—San Clemente, San Nicolas, and Santa Barbara. Suitable habitat for Island Night Lizards is extensive on San Clemente Island, and the species is abundant there. Habitat is limited and fragmented, however, on San Nicolas Island and small Santa Barbara Island. Bringing together extensive field surveys and mark-recapture sampling, we synthesize available data for Island Night Lizards on San Nicolas Island and calculate population and density estimates for the species in major habitats on the island. Island Night Lizards are widely distributed across most of the eastern half of San Nicolas Island. In contrast, they are nearly absent over the western third of the island except for isolated populations in boulder beach habitats. We combined mark-recapture population estimates with comprehensive measurements of the extent of cactus, boxthorn, and other habitat types on the island to arrive at a more accurate assessment of the status of Island Night Lizards on San Nicolas Island. High densities of Island Night Lizards on the island are found in small areas of cholla cactus ( Cylindropuntia prolifera; mean of 4100 lizards/ha), boulder beach habitat (mean of 3400 lizards/ha), and prickly pear cactus ( Opuntia spp.; mean of 1700 lizards/ha); low numbers are found in more extensive mixed-shrub habitat (mean of 250 lizards/ha). The U.S. Fish and Wildlife Service requires a post-delisting program for “monitoring the overall health of the Island Night Lizard” to assure the continued long-term viability of the species in its restricted distribution. The information on population size and habitat presented here will inform and guide conservation and management efforts by the U.S. Navy on San Nicolas Island over the coming years.

California↗
USGS2017

Final synthesis report for factors controlling DDE dechlorination rates on the palos verdes shelf: A field and laboratory investigation

This project was organized into separate field and laboratory studies aimed at answering “18 questions” in the original Scope of Work (cf., section 2 of this report, Background, for explanation). Because of some early results, certain questions became irrelevant and were, therefore, not pursued. In other cases, there simply was not enough time to complete the originally planned studies. On the other hand, additional work, not identified in any of the original “18 questions”, was carried out for purposes of addressing specific issues of concern to the USEPA (United States Environmental Protection Agency). Examples of the latter include: 1) the analysis of an expanded list of sediment cores for DDX (DDX refers to the ten DDT-related compounds of interest in this study; cf., Eganhouse et al., [1]) and selected PCB congeners to facilitate estimation of site-specific reductive dechlorination (RDC) and total loss rates, 2) analysis of gravity and box cores for trace elements to allow stratigraphic alignment, and 3) determination of the extent of mineralization of p,p’-DDE (1-chloro-2-[2,2-dichloro-1-(4- chlorophenyl)ethyl]benzene) in microcosm experiments. In this Executive Summary, we offer a brief recapitulation of what was learned about the factors controlling reductive dechlorination of p,p’-DDE in Palos Verdes Shelf (PVS) sediments using the “18 questions” as a structural guide. The summary is written in narrative form, but references to specific sections (corresponding to the “18 questions”) are identified parenthetically in the text so that the reader can explore the expanded answers that appear later in the report.

Palos Verdes Shelf↗
USGS2018

Probabilistic models of seafloor composition using multispectral acoustic backscatter: The benthic detectorists

We describe and compare two probabilistic models for task-specific seafloor characterization based on multispectral backscatter. We examine whether generative or discriminative approaches to supervised seafloor characterization do better at harnessing the greatly increased information about seafloor substrate composition that is encoded in the backscattering response across multiple frequencies. A Gaussian mixture model (GMM) is proposed as a generative model, and a fully-connected conditional random field (CRF) is proposed as a discriminative model. Either model uses input data derived from monospectral or multispectral backscatter without modification. The CRF approach considers both the relative backscatter magnitudes of different substrates as well as their relative proximity, and can be optimized using parameters. The GMM model, in contrast, includes no spatial information in its estimates, being based solely on relative backscatter magnitudes. Both GMM and CRF modeling approaches perform better with multispectral backscatter compared to monospectral, significantly outperforming all three monospectral frequencies. With multispectral backscatter inputs, based on average classification accuracies alone, there was little to choose between the two modeling approaches (classification accuracy of 81% and 83% for GMM and CRF models, respectively, evaluated using 50% of available bed observations to train and 50% to test the models). However, a CRF model that has been optimized with respect to its tunable parameters tends to produce higher posterior probabilities (i.e. greater certainty) for its classifications. Using monospectral backscatter inputs, the CRF model significantly outperformed the GMM model in terms of average classification accuracy. On balance, therefore, based on the evidence presented here, the CRF is suggested to be the superior approach for task-specific seafloor classification. Although further work using additional data is required to further examine this conclusion, the work presented here will guide and focus subsequent research efforts as more areas of the seafloor are mapped with the new technology. In order to facilitate these efforts, the algorithms presented here are encoded in a freely available python toolbox for Probabilistic acoustic Sediment Mapping, called PriSM , that can be used for both monospectral and multispectral backscatter. Finally, we show that application of the CRF model to the outputs of a geoacoustical model of seafloor scattering results in realistic substrate classification boundaries. This hybrid CRF and physics-based approach can predict the physical properties of the seafloor at a finer spatial resolution than is possible using the geoacoustical model alone.

Conference Paper↗
USGS2013

Remote sensing survey of Chinese tallow tree in the Toledo Bend Reservoir area, Louisiana and Texas

We applied Hyperion sensor satellite data acquired by the National Aeronautics and Space Administration’s Earth Observing-1 (EO-1) satellite in conjunction with reconnaissance surveys to map the occurrences of the invasive Chinese tallow tree (Triadica sebifera) in the Toledo Bend Reservoir study area of northwestern Louisiana and northeastern Texas. The rationale for application of high spectral resolution EO-1 Hyperion data was based on the successful use of Hyperion data in the mapping of Chinese tallow tree in southwestern Louisiana in 2005. In contrast to the single Hyperion image used in the 2005 project, more than 20 EO-1 Hyperion and Advanced Land Imager (ALI) images of the study area were collected in 2009 and 2010 during the fall senescence when Chinese tallow tree leaves turn red. Atmospherically corrected reflectance spectra of Hyperion imagery collected at ground and aerial observation locations provided the input datasets used in the program for spectral discrimination analysis. Discrimination analysis was used to identify spectral indicator sets to best explain variance contained in the input databases. The expectation was that at least one set of Hyperion-based indicator spectra would uniquely identify occurrences of red-leaf Chinese tallow tree; however, no combination of Hyperion-based reflectance datasets produced a unique identifier. The inability to discover a unique spectral indicator resulted primarily from relatively sparse coverage by red-leaf Chinese tallow tree within the study area (percentage of coverage was less than 5 percent per 30- by 30-meter Hyperion pixel). To enhance the performance of the spectral discrimination analysis, leaf and canopy spectra of Chinese tallow tree were added to the input datasets to guide the indicator selection. In addition, input databases were segregated by land class obtained from an ALI-based landcover classification in order to reduce the input variance and to promote spectral discrimination of red-leaf Chinese tallow tree. Although no unique spectral identifier for red-leaf Chinese tallow tree was uncovered with these enhanced methods, in some cases predicted spatial patterns throughout the Hyperion images revealed alignment with vegetation associations within each land class that was often observed to contain Chinese tallow trees. These instances were associated particularly with the addition of helicopter-based spectra to the input databases. It was attempted to extend such predictions of likely occurrences of Chinese tallow tree by mapping six of the nine Hyperion swaths and four of the nine land classes, but this attempt produced uncertain results that could not be fully evaluated for accuracy. Even though the final mapping showed promise in identifying likely Chinese tallow tree occurrences, the low percentage of occurrences hindered mapping performance and validation. Results of the mapping suggested that successful detection of Chinese tallow tree in the study area would require a spectral sensor similar to the Hyperion but with a higher ground-level spatial resolution. Although the Hyperion-based spectral mapping did not provide the desired results, the associated field (ground and aerial) surveys did provide for a qualitative assessment of the overall Chinese tallow tree distribution within the study area. Ground and aerial surveys suggested that Chinese tallow tree occurrences were uncommon and were without an observed pattern in relation to proximity to the Toledo Bend Reservoir. Although uncommon and scattered, Chinese tallow trees and shrubs most commonly existed along forest edges, water edges, and fence lines, probably most in line with seed dispersal by birds. Chinese tallow trees were observed to be more densely dispersed within some scrublands and grasslands than were observed in pine, hardwood, and mixed forests.

Louisiana;Texas↗
USGS2021

Riverscape approaches in practice: Perspectives and applications

Landscape perspectives in riverine ecology have been undertaken increasingly in the last 30 years, leading aquatic ecologists to develop a diverse set of approaches for conceptualizing, mapping and understanding ‘riverscapes’. Spatiotemporally explicit perspectives of rivers and their biota nested within the socio-ecological landscape now provide guiding principles and approaches in inland fisheries and watershed management. During the last two decades, scientific literature on riverscapes has increased rapidly, indicating that the term and associated approaches are serving an important purpose in freshwater science and management. We trace the origins and theoretical foundations of riverscape perspectives and approaches and examine trends in the published literature to assess the state of the science and demonstrate how they are being applied to address recent challenges in the management of riverine ecosystems. We focus on approaches for studying and visualizing rivers and streams with remote sensing, modelling and sampling designs that enable pattern detection as seen from above (e.g. river channel, floodplain, and riparian areas) but also into the water itself (e.g. aquatic organisms and the aqueous environment). Key concepts from landscape ecology that are central to riverscape approaches are heterogeneity, scale (resolution, extent and scope) and connectivity (structural and functional), which underpin spatial and temporal aspects of study design, data collection and analysis. Mapping of physical and biological characteristics of rivers and floodplains with high-resolution, spatially intensive techniques improves understanding of the causes and ecological consequences of spatial patterns at multiple scales. This information is crucial for managing river ecosystems, especially for the successful implementation of conservation, restoration and monitoring programs. Recent advances in remote sensing, field-sampling approaches and geospatial technology are making it increasingly feasible to collect high-resolution data over larger scales in space and time. We highlight challenges and opportunities and discuss future avenues of research with emerging tools that can potentially help to overcome obstacles to collecting, analysing and displaying these data. This synthesis is intended to help researchers and resource managers understand and apply these concepts and approaches to address real-world problems in freshwater management.

Biological Reviews↗
USGS2022

Assembling a safe and effective toolbox for integrated flea control and plague mitigation: Fipronil experiments with prairie dogs

Background Plague, a widely distributed zoonotic disease of mammalian hosts and flea vectors, poses a significant risk to ecosystems throughout much of Earth. Conservation biologists use insecticides for flea control and plague mitigation. Here, we evaluate the use of an insecticide grain bait, laced with 0.005% fipronil (FIP) by weight, with black-tailed prairie dogs (BTPDs, Cynomys ludovicianus ). We consider safety measures, flea control, BTPD body condition, BTPD survival, efficacy of plague mitigation, and the speed of FIP grain application vs. infusing BTPD burrows with insecticide dusts. We also explore conservation implications for endangered black-footed ferrets ( Mustela nigripes ), which are specialized predators of Cynomys . Principal findings During 5- and 10-day laboratory trials in Colorado, USA, 2016–2017, FIP grain had no detectable acute toxic effect on 20 BTPDs that readily consumed the grain. During field experiments in South Dakota, USA, 2016–2020, FIP grain suppressed fleas on BTPDs for at least 12 months and up to 24 months in many cases; short-term flea control on a few sites was poor for unknown reasons. In an area of South Dakota where plague circulation appeared low or absent, FIP grain had no detectable effect, positive or negative, on BTPD survival. Experimental results suggest FIP grain may have improved BTPD body condition (mass:foot) and reproduction (juveniles:adults). During a 2019 plague epizootic in Colorado, BTPDs on 238 ha habitat were protected by FIP grain, whereas BTPDs were nearly eliminated on non-treated habitat. Applications of FIP grain were 2–4 times faster than dusting BTPD burrows. Significance Deltamethrin dust is the most commonly used insecticide for plague mitigation on Cynomys colonies. Fleas on BTPD colonies exhibit the ability to evolve resistance to deltamethrin after repeated annual treatments. Thus, more tools are needed. Accumulating data show orally-delivered FIP is safe and usually effective for flea control with BTPDs, though potential acute toxic effects cannot be ruled out. With continued study and refinement, FIP might be used in rotation with, or even replace deltamethrin, and serve an important role in Cynomys and black-footed ferret conservation. More broadly, our stepwise approach to research on FIP may function as a template or guide for evaluations of insecticides in the context of wildlife conservation.

South Dakota↗
USGS2011

Development of a bioenergetics model for age-0 American shad

Bioenergetics modeling can be used as a tool to investigate the impact of non-native age-0 American shad ( Alosa sapidissima ) on reservoir and estuary food webs. The model can increase our understanding of how these fish influence lower trophic levels as well as predatory fish populations that feed on juvenile salmonids. Bioenergetics modeling can be used to investigate ecological processes, evaluate alternative research hypotheses, provide decision support, and quantitative prediction. Bioenergetics modeling has proven to be extremely useful in fisheries research (Ney et al. 1993,Chips and Wahl 2008, Petersen et al. 2008). If growth and diet parameters are known, the bioenergetics model can be used to quantify the relative amount of zooplankton or insects consumed by age-0 American shad. When linked with spatial and temporal information on fish abundance, model output can guide inferential hypothesis development to demonstrate where the greatest impacts of age-0 American shad might occur. Bioenergetics modeling is particularly useful when research questions involve multiple species and trophic levels (e.g. plankton communities). Bioenergetics models are mass-balance equations where the energy acquired from food is partitioned between maintenance costs, waste products, and growth (Winberg 1956). Specifically, the Wisconsin bioenergetics model (Hanson et al. 1997) is widely used in fisheries science. Researchers have extensively tested, reviewed, and improved on this modeling approach for over 30 years (Petersen et al. 2008). Development of a bioenergetics model for any species requires three key components: 1) determine physiological parameters for the model through laboratory experiments or incorporate data from a closely related species, 2) corroboration of the model with growth and consumption estimates from independent research, and 3) error analysis of model parameters. Wisconsin bioenergetics models have been parameterized for many of the salmonids and predatory fishes encountered in the lower Columbia River (Petersen and Ward 1999). The Wisconsin bioenergetics model has not been developed for American shad, however Limburg (1996) parameterized a simplified bioenergetics growth model for this species. A common application for the Wisconsin bioenergetics model is to estimate the consumption or growth of a fish population under different temperature and feeding scenarios (Ney 1993). One advantage of the bioenergetics approach is that consumption can be estimated without direct field measurements of predation rate (prey·predator -1 · day -1 ; Petersen and Ward 1999). Field estimates of fish consumption are time consuming and costly to determine, and estimates may show wide variance due to environmental and sampling variability. However, the consumption parameters used in a newly developed bioenergetics model must be verified with field and laboratory estimates of consumption (Ney 1993). The objective of this research was to parameterize a Wisconsin bioenergetics model for age-0 American shad using published physiological data on American shad and closely related alosine species. The American shad bioenergetics model will be used as a tool to explore various hypotheses about how age-0 American shad directly and indirectly affect Columbia River salmon through ecological interactions in lower Columbia River food webs. One over-arching focus of the larger research project was to identify potential interactions between age-0 American shad and juvenile salmonids, addressing potential outcomes through bioenergetics modeling scenarios. This report contains two bioenergetics modeling applications to demonstrate how these models can be used to address management questions and direct research effort. The first modeling application uses the American shad bioenergetics model described in this report to explore prey consumption by age-0 American shad (Chapter 1, this report). Dietary data on age-0 American shad and previously published reports on the diet of juvenile fall Chinook salmon (Rondorf et al. 1990, USGS unpublished data) suggested there might be considerable dietary overlap between these species in the lower Columbia River. The U.S. Geological Survey (USGS) was interested in using the American shad bioenergetics model to explore hypotheses concerning dietary overlap between age-0 American shad and emigrating fall Chinook salmon. The second modeling application uses the fall Chinook salmon bioenergetics model (Koehler et al. 2006) to explore the growth potential of juvenile fall Chinook salmon predating on age-0 American shad in the lower Columbia River. This modeling was based dietary information on a small number of age-0 fall Chinook salmon (n = 13) collected in John Day Reservoir in 1994 - 1996 (unpublished USGS data). Analysis of this dietary data found that these salmonids were feeding primarily on age-0 American shad (> 75% by weight).

Oregon↗
USGS2010

Development of monitoring protocols to detect change in rocky intertidal communities of Glacier Bay National Park and Preserve

Glacier Bay National Park and Preserve in southeastern Alaska includes extensive coastlines representing a major proportion of all coastlines held by the National Park Service. The marine plants and invertebrates that occupy intertidal shores form highly productive communities that are ecologically important to a number of vertebrate and invertebrate consumers and that are vulnerable to human disturbances. To better understand these communities and their sensitivity, it is important to obtain information on species abundances over space and time. During field studies from 1997 to 2001, I investigated probability-based rocky intertidal monitoring designs that allow inference of results to similar habitat within the bay and that reduce bias. Aerial surveys of a subset of intertidal habitat indicated that the original target habitat of bedrock-dominated sites with slope less than or equal to 30 degrees was rare. This finding illustrated the value of probability-based surveys and led to a shift in the target habitat type to more mixed rocky habitat with steeper slopes. Subsequently, I investigated different sampling methods and strategies for their relative power to detect changes in the abundances of the predominant sessile intertidal taxa: barnacles -Balanomorpha, the mussel Mytilus trossulus and the rockweed Fucus distichus subsp. evanescens. I found that lower-intensity sampling of 25 randomly selected sites (= coarse-grained sampling) provided a greater ability to detect changes in the abundances of these taxa than did more intensive sampling of 6 sites (= fine-grained sampling). Because of its greater power, the coarse-grained sampling scheme was adopted in subsequent years. This report provides detailed analyses of the 4 years of data and evaluates the relative effect of different sampling attributes and management-set parameters on the ability of the sampling to detect changes in the abundances of these taxa. The intent was to provide managers with information to guide design choices for intertidal monitoring. I found that the coarse-grained surveys, as conducted from 1998 to 2001, had power ranging from 0.68 to 1.0 to detect 10 percent annual changes in the abundances of these predominant sessile species. The information gained through intertidal monitoring would be useful in assessing changes due to climate (including ocean acidification), invasive species, trampling effects, and oil spills.

Open-File Report↗
USGS2016

Preliminary characterization of nitrogen and phosphorus in groundwater discharging to Lake Spokane, northeastern Washington, using stable nitrogen isotopes

Lake Spokane, locally referred to as Long Lake, is a 24-mile-long section of the Spokane River impounded by Long Lake Dam that has, in recent decades, experienced water-quality problems associated with eutrophication. Consumption of oxygen by the decomposition of aquatic plants that have proliferated because of high nutrient concentrations has led to seasonally low dissolved oxygen concentrations in the lake. Of nitrogen and phosphorus, the two primary nutrients necessary for aquatic vegetation growth, phosphorus was previously identified as the limiting nutrient that regulates the growth of aquatic plants and, thus, dissolved oxygen concentrations in Lake Spokane. Phosphorus is delivered to Lake Spokane from municipal and industrial point-source inputs to the Spokane River upstream of Lake Spokane, but is also conveyed by groundwater and surface water from nonpoint-sources including septic tanks, agricultural fields, and wildlife. In response, the Washington State Department of Ecology listed Lake Spokane on the 303(d) list of impaired water bodies for low dissolved oxygen concentrations and developed a Total Maximum Daily Load for phosphorus in 1992, which was revised in 2010 because of continuing algal blooms and water-quality concerns. This report evaluates the concentrations of phosphorus and nitrogen in shallow groundwater discharging to Lake Spokane to determine if a difference exists between nutrient concentrations in groundwater discharging to the lake downgradient of residential development with on-site septic systems and downgradient of undeveloped land without on-site septic systems. Elevated nitrogen isotope values (δ 15 N) within the roots of aquatic vegetation were used as an indicator of septic-system derived nitrogen. δ 15 N values were measured in August and September 2014 downgradient of residential development near the lakeshore, of residential development on 300-ft-high terraces above the lake, and of undeveloped land in the eastern (upper) and central (lower) parts of Lake Spokane. Significantly lower δ 15 N values were measured within aquatic vegetation downgradient of undeveloped land in eastern Lake Spokane relative to both near-shore and terrace residential development land uses. Conversely, significantly higher δ 15 N values were measured downgradient of undeveloped land in central Lake Spokane relative to the two developed land uses. These results guided the location of subsequent groundwater sampling in March and April 2015 from 30 shallow piezometers driven into the near-shore area of Lake Spokane. Nitrate plus nitrite concentrations in groundwater discharging to Lake Spokane downgradient of undeveloped areas were significantly lower than those measured downgradient of both near-shore and terrace residential development. Orthophosphate concentrations in groundwater were not significantly different with respect to upgradient land use.

Washington↗
USGS2005

Pilot inventory of mammals, reptiles, and amphibians, Golden Gate National Recreation Area, California, 1990-1997

The United States Geological Survey Golden Gate Field Station conducted a baseline inventory of terrestrial vertebrates within the Golden Gate National Recreation Area (GGNRA), Marin, San Francisco, and San Mateo Counties, California between 1990 and 1997. We established 456 permanent study plots in 6 major park habitats, including grassland, coastal scrub, riparian woodland, coastal wetland, broad-leaved evergreen forest, and needle-leaved evergreen forest. We tested multiple inventory methods, including live traps, track plate stations, and artificial cover boards, across all years and habitats. In most years, sampling occurred in 3-4 primary sampling sessions between July and September. In 1994, additional sampling occurred in February and May in conjunction with an assessment of Hantavirus exposure in deer mice (Peromyscus maniculatus). Overall, we detected 32 mammal, 14 reptile, and 6 amphibian species during 25,222 trap-nights of effort. The deer mouse-the most abundant species detected--accounted for 67% of total captures. We detected the Federal Endangered salt marsh harvest mouse (Reithrodontomys raviventris) at one coastal wetland plot in 1992. This project represents the first phase in the development of a comprehensive terrestrial vertebrate inventory and monitoring program for GGNRA. This report summarizes data on relative abundance, frequency of occurrence, distribution across habitat types, and trap success for terrestrial vertebrates detected during this 7-year effort. It includes comprehensive descriptions of the inventory methods and sampling strategies employed during this survey and is intended to help guide the park in the implementation of future longterm ecological monitoring programs.

California↗
USGS1996

Seafloor environments in Cape Cod Bay, a large coastal embayment

Cape Cod Bay is a glacial, semi-enclosed embayment that has a patchy distribution of modern seafloor sedimentary environments of erosion or nondeposition, deposition, and sediment reworking. Sidescan-sonar records and supplemental bathymetric, sedimentary, subbottom, and physical-oceanographic data indicate that the characteristics and distribution of these three categories of bottom environments are controlled by a combination of geologic and oceanographic processes that range from episodic to long-term and from regional to local. (1) Environments of erosion or nondeposition comprise exposures of bedrock, glacial drift, and coarse lag deposits that contain sediments (where present) ranging from boulder fields to gravelly coarse-to-medium sands. These environments are dominant on the shallow margins of the bay (water depths < 30 m) where they reflect sediment resuspension, winnowing, and transport during modern northerly storms. (2) Environments of deposition are blanketed by fine-grained sediments ranging from muds to muddy fine sands. These environments are dominant across the floor of the central basin (water depths = 30–60 m) where fine-grained sediments (derived from regional and local sources and emplaced primarily during episodic wind- and density-driven flow) settle through the water column and accumulate under weak bottom currents during nonstorm conditions. (3) Environments of sediment reworking contain patches with diverse textures ranging from gravelly sands to muds. These environments occupy much of the transitional slopes between the margins and the basin floor and reflect a combination of erosion and deposition. The patchy distribution of sedimentary environments within the bay reflects not only regional changes in processes between the margins and the basin but local changes within each part of the bay as well. Small-scale patchiness is caused by local changes in the strengths of wave- and wind-driven currents and (on the margins) by local variations in the supply of fine-grained sediments. This study indicates areas within Cape Cod Bay where fine-grained sediments and associated contaminants are likely to be either moved or deposited. It also provides a guide to the locations and variability of benthic habitats.

Cape Cod Bay↗
USGS2022

Mega-depressions on the Cocos Ridge: Links between volcanism, faults, hydrothermal circulation, and dissolution

High-resolution bathymetry and 3D seismic data along the Cocos Ridge reveal a 245 km 2 field of ∼1 to 4 km in diameter seafloor depressions. The seafloor depressions are part of a two-tiered honeycomb pattern. The lower-tier depressions have steep faults that truncate strata with chaotic internal reflections consistent with sediment collapse into the depression. These extend into a lens shaped interval just above igneous basement. Overlying these depressions is a second broader set with rough seafloor morphology with gently dipping boundaries defined by pinch-out stratigraphic patterns. Drilling results indicate that the lens-shaped zones that host the deeper depressions represent anomalous regions of high porosity, low velocity, and low density within calcareous rich sediment. Analysis of nannofossils from IODP Site U1414 suggests the collapse structures formed during the late Miocene, whereas the younger shallower depressions likely formed between the early Pliocene and the Pliocene-Pleistocene boundary. Geochemical and petrological analysis at Site U1414 suggests that hydrothermal circulation during the late Miocene led to carbonate dissolution and collapse. Following collapse, focused fluid-flow and bottom current scouring resulted in formation of the overlying set of depressions and a honeycomb seafloor morphology. Similar sets of depressions along the Carnegie Ridge to the south support the hypothesis that two-tiered depressions formed in response to processes that occurred broadly across the Panama Basin between the late Miocene and the Pliocene-Pleistocene transition. Geochemical results at Site U1414, combined with geophysical data, suggest this two-tiered system of depressions currently guides ongoing fluid outflow.

Geochemistry, Geophysics, Geosystems↗