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USGS2016

Maternal transfer of contaminants in birds: Mercury and selenium concentrations in parents and their eggs

We conducted a detailed assessment of the maternal transfer of mercury and selenium to eggs in three bird species ( n = 107 parents and n = 339 eggs), and developed predictive equations linking contaminant concentrations in eggs to those in six tissues of the mother (blood, muscle, liver, kidney, breast feathers, and head feathers). Mercury concentrations in eggs were positively correlated with mercury concentrations in each of the mother's internal tissues ( R 2 ≥ 0.95), but generally not with feathers. For each species, the proportion of mercury transferred to eggs decreased as mercury concentrations in the mother increased. At the same maternal mercury concentration, the proportion of mercury transferred to eggs differed among species, such that Forster's tern ( Sterna forsteri ) and black-necked stilt ( Himantopus mexicanus ) females transferred more methylmercury to their eggs than American avocet ( Recurvirostra americana ) females. Selenium concentrations in eggs also were correlated with selenium concentrations in the mother's liver ( R 2 = 0.87). Furthermore, mercury and selenium concentrations in tern eggs were positively correlated with those in the father ( R 2 = 0.84). Incubating male terns had 21% higher mercury concentrations in blood compared to incubating females at the same egg mercury concentration. We provide equations to predict contaminant concentrations in eggs from each of the commonly sampled bird tissues.

Environmental Pollution↗

USGS2018

Monitoring algal blooms in drinking water reservoirs using the Landsat-8 Operational Land Imager

In this study, we demonstrated that the Landsat-8 Operational Land Imager (OLI) sensor is a powerful tool that can provide periodic and system-wide information on the condition of drinking water reservoirs. The OLI is a multispectral radiometer (30 m spatial resolution) that allows ecosystem observations at spatial and temporal scales that allow the environmental community and water managers another means to monitor changes in water quality not feasible with field-based monitoring. Using the provisional Land Surface Reflectance product and field-collected chlorophyll- a (chl- a ) concentrations from drinking water monitoring programs in North Carolina and Rhode Island, we compared five established approaches for estimating chl- a concentrations using spectral data. We found that using the three band reflectance approach with a combination of OLI spectral bands 1, 3, and 5 produced the most promising results for accurately estimating chl- a concentrations in lakes ( R 2 value of 0.66; root mean square error value of 8.9 µg l −1 ). Using this model, we forecast the spatial and temporal variability of chl- a for Jordan Lake, a recreational and drinking water source in piedmont North Carolina and several small ponds that supply drinking water in southeastern Rhode Island.

North Carolina↗

USGS2007

Vision for a worldwide fluvial-sediment information network

The nations of the world suffer both from the deleterious effects of some natural and human-altered fluxes of fluvial sediment and a lack of consistent and reliable information on the temporal and spatial occurrence of fluvial sediments. Decades ago, this difficulty was unavoidable due to a lack of understanding of the magnitude and scope of environmental influences exerted by fluvial sediment coupled with a dearth of tools for monitoring and studying the data. Such is no longer the case. Fluvial sediment has a broad influence on the environment and humanity. Data needs that were once limited primarily to reservoir and channel maintenance now include issues associated with public water supply; contaminated sediment management; productivity of agricultural lands; stream restoration and watershed health; in-stream biotic stability; post-wildfire channel morphology; dam decommissioning, rehabilitation, or removal; and legal requirements for sediment management (Gray and Glysson, 2005). The adverse effects of poorly managed or unmanaged sediment movement related to these and other issues are well-known qualitatively, and in some cases quantitatively. For example, physical, chemical, and biological damages attributable to fluvial sediment in North America alone are now estimated to range between $20 billion and $50 billion annually (Pimental and others, 1995; Osterkamp and others, 1998; 2004). Capabilities for monitoring, analyzing, storing, and sharing fluvial-sediment data have been developed and, in many cases, are sufficiently mature for consideration for global utilization. Hence, there is not only a strong and expanding need for a global effort to gauge and understand fluvial-sediment characteristics and processes better, but the knowledge and tools to achieve these ends are largely available and ready for their applicability to be evaluated. Given the increasing importance of erosion and sediment processes for water-resources management, an International Sedimentation Initiative (ISI, 2007a), under the United Nations Educational, Scientific, and Cultural Organization’s International Hydrologic Programme (IHP, 2007) was adopted in 2004. The ISI, the focus of which is on sustainable water-resources management on the global scale, features six major activities and projects, which are listed as part of the section entitled, “Relation of the WoFSIN concept to the thrusts of the International Sedimentation Initiative,” that precedes the “Conclusions” section of this paper. Based on the need for more, and more consistent and reliable fluvial-sediment information and on the existence of the ISI and other international and national sediment programs, we envision the need for a Worldwide Fluvial Sediment-Information Network (WoFSIN) with a focus on data acquisition, storage, and dissemination globally. Envisioned components of a WoFSIN, administered largely via the Internet and relying mostly on the benefits derived from existing resources and programs, follow that summary. The goal of the WoFSIN is to maximize the availability and usefulness of the world’s historical and current fluvial-sediment and ancillary data through collaboration with existing programs so as to require few additional resources in the long-term. Thus, the WoFSIN concept was developed recognizing that informed resource management is predicated on the availability of adequate and reliable information. The WoFSIN is described in the ensuing sections in stand-alone fashion, followed by a section that describes the complementary aspects of the WoFSIN and the International Sediment Initiative. Thus, our first objective is to describe the fundamental components of a WoFSIN. Our second objective is to identify overlap or gaps between the WoFSIN and ISI concepts that might be useful in refining the ISI’s ability to meet its global mission to develop decision support for sediment management at the global scale more fully, cost-effectively, and (or) with enhanced quality.

Conference Paper↗

USGS1998

A policy model to initiate environmental negotiations: Three hydropower workshops

How do I get started in natural resource negotiations? Natural resource managers often face difficult negotiations when they implement laws and policies regulating such resources as water, wildlife, wetlands, endangered species, and recreation. As a result of these negotiations, managers must establish rules, grant permits, or create management plans. The Legal‐Institutional Analysis Model (LIAM) was designed to assist managers in systematically analyzing the parties in natural resource negotiations and using that analysis to prepare for bargaining. The LIAM relies on the theory that organizations consistently employ behavioral roles. The model uses those roles to predict likely negotiation behavior. One practical use of the LIAM is when all parties to a negotiation conduct a workshop as a way to open the bargaining on a note of trust and mutual understanding. The process and results of three LIAM workshops designed to guide hydroelectric power licensing negotiations are presented. Our experience with these workshops led us to conclude that the LIAM can be an effective tool to begin a negotiation and that trust built through the workshops can help create a successful result.

Human Dimensions of Wildlife: An International Jou↗

USGS2003

Nonylphenol ethoxylates and other additives in aircraft deicers, antiicers, and waters receiving airport runoff

Samples of nine different formulations of aircraft deicer and antiicer fluids (ADAF) were screened for the presence of selected surfactants. Nonylphenol ethoxylates (NPnEO) were identified in three ADAF formulations, octylphenol ethoxylates were identified in two formulations, and six formulations contained alcohol ethoxylates. A preliminary field study was conducted at General Mitchell International Airport, Milwaukee, WI, to quantify NPnEO (n = 1-15) and one of its byproducts, nonylphenol (NP), in airport runoff. Samples were collected from two airport outfalls, from the receiving stream, and from an upstream reference site during intensive ADAF application events. NPnEO was measured at concentrations up to 1190microg/L in airport outfall samples, up to 77 ug/L in samples from the receiving stream and less than 5.0 microg/L from the upstream reference. Concentrations of glycol and other ADAF-related constituents, including NPnEO, were reduced by approximately 1 order of magnitude between the outfall sites and the receiving stream site; however, concentrations of NP in the receiving stream remained similar to those from the outfalls (< 0.04 microg/L at the upstream reference, 0.98 and 7.67 microg/L at outfalls, and 3.89 microg/L in the receiving stream). The field data suggest that NP is generated through degradation of NPnEO from airport runoff.

Wisconsin↗

USGS2006

The National Assessment of Shoreline Change: A GIS compilation of vector shorelines and associated shoreline change data for the sandy shorelines of the California coast

Introduction The Coastal and Marine Geology Program of the U.S. Geological Survey has generated a comprehensive data clearinghouse of digital vector shorelines and shoreline change rates for the sandy shoreline along the California open coast. These data, which are presented herein, were compiled as part of the U.S. Geological Survey's National Assessment of Shoreline Change Project. Beach erosion is a chronic problem along many open-ocean shores of the United States. As coastal populations continue to grow and community infrastructures are threatened by erosion, there is increased demand for accurate information including rates and trends of shoreline migration. There is also a critical need for shoreline change data that is consistent from one coastal region to another. One purpose of this work is to develop standard, repeatable methods for mapping and analyzing shoreline movement so that periodic, systematic, and internally consistent updates of shorelines and shoreline change rates can be made at a National Scale. This data compilation for open-ocean, sandy shorelines of the California coast is one in a series that already includes the Gulf of Mexico and the Southeast Atlantic Coast (Morton et al., 2004; Morton et al., 2005) and will eventually cover Washington, Oregon, and parts of Hawaii and Alaska. Short- and long-term shoreline change evaluations are determined by comparing the positions of three historical shorelines digitized from maps, with a modern shoreline derived from LIDAR (light detection and ranging) topographic surveys. Historical shorelines generally represent the following time-periods: 1850s-1880s, 1920s-1930s, and late 1940s-1970s. The most recent shoreline is from data collected between 1997 and 2002. Long-term rates of change are calculated by linear regression using all four shorelines. Short-term rates of change are end-point rate calculations using the two most recent shorelines. Please refer to our full report on shoreline change of the California coastline at http://pubs.usgs.gov/of/2006/1219/ for additional information regarding methods and results (Hapke et al., 2006). Data in this report are organized into downloadable layers by region (Northern, Central and Southern California) and are provided as vector datasets with metadata. Vector shorelines may represent a compilation of data from one or more sources and these sources are included in the dataset metadata. This project employs the Environmental Systems Research Institute's (ESRI) ArcGIS as it's GIS mapping tool and contains several data layers (shapefiles) that are used to create a geographic view of the California Coast. These vector data form a basemap comprised of polygon and line themes that include a U.S. coastline (1:80,000), U.S. cities, and state boundaries.

California↗

USGS2021

Estimation of dissolved-solids concentrations using continuous water-quality monitoring and regression models at four sites in the Yuma area, Arizona and California, January 2017 through March 2019

Multiple linear regression models were developed to estimate dissolved-solids concentrations in water at four sites in the Yuma area between Imperial Dam, Arizona and California and the southerly international boundary with Mexico at San Luis, Arizona. Continuous and discrete water-quality data were collected at gaging stations in the Colorado River upstream from Imperial Dam, Arizona-California, the Colorado River below Cooper wasteway near Yuma, Arizona, the Yuma Main Drain above Arizona–Sonora, Mexico boundary, and the 242 lateral above Main Drain at the Arizona–Sonora boundary. Continuous specific conductance and water temperature data were collected at each site between January 2017 and March 2019. Bi-weekly to monthly dissolved-solids water samples were collected during the same period. Continuous specific conductance data collected at the Colorado River below Cooper wasteway were affected by poorly mixed streamflow during periods when the Pilot Knob Hydro-electric Plant was releasing water to the river. The continuous specific conductance data for the site downstream from Cooper wasteway were corrected using mean specific conductance values computed from cross-section measurements collected during site visits. Continuous specific conductance data were affected by sensor fouling issues at the 242 lateral site, and continued operation at the site would require more frequent visits for cleaning and service to ensure data quality. During the study, instream specific conductance readings ranged from 966 to 3,030 microsiemens per centimeter (μS/cm) at 25 degrees Celsius. Computed dissolved-solids concentrations from discrete samples ranged from 690 to 2,580 milligrams per liter (mg/L). Dissolved-solids concentrations were estimated from regression models using the optimal relation between dissolved solids and environmental factors, such as specific conductance, water temperature, dissolved oxygen, streamflow, and seasonality. Specific conductance was the primary factor at all four sites and explained 87.6 to 94 percent of variation in dissolved solids. Water temperature, as an indicator of seasonality, was determined to be a statistically significant secondary factor at both the Colorado River above Imperial Dam and Colorado River below Cooper wasteway sites explaining an additional 6.9 and 2.1 percent of variation in dissolved solids, respectively. Regression models explained 87.6 to 96.9 percent of the variation in dissolved solids; the root mean square error in the modeled data ranged between about 6 and 27 mg/L.

Arizona, California↗

USGS2004

Historical perspectives on the concept of ecosystem degradation

The concept of environmental degradation has evolved with the development of human society and settlement. In early human development, tribes went through a series of cycles of taming or developing mastery over the environment, to utilizing the resources of that environment until they could no longer support the population, which lead to moving on to do it again in a new area. There seems to have been little sense that human activity was causing any degradation, it was only that there was no longer enough food. This sense of the concept of degradation can even be seen as late as the 16th and 17th centuries in North America as Europeans "tamed" the land from the south, east, and north. For the Europeans, this taming of the "dangerous" and "inhospitable" lands even included the indigenous peoples. World-wide, as humans gathered into towns and cities, the impacts on the environment became increasingly widespread. Goods had to be brought to the people from further and further away. While agriculture and herd management were being developed, there was still the sense that these activities were improvements. It is a rather modern social understanding that human activities can and do damage and degrade natural ecosystems. The concept began to dawn when society began to understand that some activities caused degraded human health. Only recently has society begun to understand the need for generally healthy natural ecosystems and this understanding has brought with it a whole host of legal and political actions to make it happpen. ?? International Scientific Publications, New Delhi.

Conference Paper↗

USGS2026

DRIFteRS: A dataset of drift invertebrate densities in streams and rivers across western North America, 1997–2024

Prey availability is among the most influential and highly variable determinants of fish growth and freshwater habitat carrying capacity, yet it remains understudied compared to physical habitat variables (Ouellet et al., 2025; Rosenfeld et al., 2014; Weber et al., 2017). We often lack a clear understanding of how much food is available to fishes, how it varies spatially and temporally, and how it influences responses to restoration (Ouellet et al., 2025; Rossi et al., 2024; Wipfli et al., 2010). Drift invertebrates—the primary food source for juvenile salmonids and other drift-foraging fishes—play a pivotal role in these dynamics. To better understand the spatiotemporal variability of drift invertebrate abundance and biomass across the freshwater range of drift-feeding salmonids in western North America, we compiled the DRift Invertebrates For salmonids in River Systems (DRIFteRS) dataset. The dataset encompasses 6125 samples of drift invertebrates, and, for a subset of drift samples, associated benthic invertebrate density data, collected from 1360 reaches on 459 unique rivers and streams spanning 55 river basins considered hydrologically independent (i.e., not nested within the same larger watershed) across British Columbia, Canada, and the U.S. states of Alaska, Arizona, California, Colorado, Idaho, Nevada, New Mexico, Oregon, Utah, Washington, and Wyoming. Sample sites represent a diverse array of river and stream habitats (e.g., headwater, mainstem, side channel), in watersheds with diverse land uses (e.g., urban, wilderness, agricultural), and disturbance histories (e.g., fire, restoration). Collected between 1997 and 2024, the data span the full calendar year and capture daily and seasonal patterns in drift abundance and biomass densities. When paired with water quality and quantity data as well as remotely sensed environmental landscape data, such as land use/land cover, climate, and disturbance history, channel morphology, and riparian vegetation composition, the DRIFteRS dataset can aid in identifying key drivers of drift invertebrate densities and mean body size and support predictive modeling in unsampled locations and times. The dataset may also be used to analyze aquatic-terrestrial resource flows, derive prey-encounter rates and profitability (mean prey size), and inform broader investigations of sit-and-wait foraging ecology, especially when paired with data on drift-foraging predators. For salmonid-focused applications, the dataset can be integrated into habitat evaluation models, including bioenergetic (e.g., Naman et al., 2019) and life cycle models (e.g., Beechie et al., 2023), to improve estimates of habitat capacity and population dynamics for river- and stream-rearing salmonids. Understanding prey availability dynamics is increasingly important, because rising water temperatures increase salmonid metabolic demands (Crozier et al., 2010). Flow regime transitions (i.e., snow or glacier dominated to rain dominated; Beechie et al., 2013), wildfire frequency and intensity (Hessburg et al., 2021), as well as plant community and phenology shifts (Cleland et al., 2007; Franklin et al., 2016) are all predicted to change with rising temperatures and are potential drivers of terrestrial and aquatic invertebrate prey quality and availability in lotic systems. These insights can ultimately inform restoration prioritization and design, helping managers consider food resource implications when evaluating restoration priorities and match habitat improvement to food supply. The data are released under the Creative Commons Attribution 4.0 International license and may be reused with attribution.

Alaska, Arizona, British Columbia, California, Col↗

USGS2005

Coral disease and health workshop: Coral histopathology II, July 12-14, 2005

The health and continued existence of coral reef ecosystems are threatened by an increasing array of environmental and anthropogenic impacts. Coral disease is one of the prominent causes of increased mortality among reefs globally, particularly in the Caribbean. Although over 40 different coral diseases and syndromes have been reported worldwide, only a few etiological agents have been confirmed; most pathogens remain unknown and the dynamics of disease transmission, pathogenicity and mortality are not understood. Causal relationships have been documented for only a few of the coral diseases, while new syndromes continue to emerge. Extensive field observations by coral biologists have provided substantial documentation of a plethora of new pathologies, but our understanding, however, has been limited to descriptions of gross lesions with names reflecting these observations (e.g., black band, white band, dark spot). To determine etiology, we must equip coral diseases scientists with basic biomedical knowledge and specialized training in areas such as histology, cell biology and pathology. Only through combining descriptive science with mechanistic science and employing the synthesis epizootiology provides will we be able to gain insight into causation and become equipped to handle the pending crisis. One of the critical challenges faced by coral disease researchers is to establish a framework to systematically study coral pathologies drawing from the field of diagnostic medicine and pathology and using generally accepted nomenclature. This process began in April 2004, with a workshop titled Coral Disease and Health Workshop: Developing Diagnostic Criteria co-convened by the Coral Disease and Health Consortium (CDHC), a working group organized under the auspices of the U.S. Coral Reef Task Force, and the International Registry for Coral Pathology (IRCP). The workshop was hosted by the U.S. Geological Survey, National Wildlife Health Center (NWHC) in Madison, Wisconsin and was focused on gross morphology and disease signs observed in the field. A resounding recommendation from the histopathologists participating in the workshop was the urgent need to develop diagnostic criteria that are suitable to move from gross observations to morphological diagnoses based on evaluation of microscopic anatomy. As a continuation of building the foundation and framework for coral disease diagnostics, the CDHC convened the Coral Disease and Health Workshop: Coral Histopathology II in Charleston, South Carolina, July 11-14, 2005. The workshop was hosted by the Department of Pathology and Laboratory Medicine at the Medical University of South Carolina, Charleston, SC which provided expertise, facilities and equipment in support of the workshop. All of the histological slides and related photographs used in the discussions were prepared and supplied by the IRCP. This workshop brought together 15 experts in veterinary and medical pathology and coral biology from national and international research institutes and government laboratories. The mission was to devise a standardized approach to examining microscopic anatomy and pathology of corals and a standardized nomenclature to facilitate accurate descriptions of the microscopic morphology of corals and enhance communication among specialists investigating causes of coral death. 2 The participants of this workshop deliberated for 3 days to refine the nomenclature for gross and microscopic anatomy of corals and systematically described microscopic changes associated with selected coral diseases. The findings and recommendations from the deliberations will be submitted to the research community for peer review. The standardized nomenclature and descriptions produced at this workshop will ultimately be made available to the scientific community through a variety of media including the World Wide Web. An exciting highlight of this meeting was provided by Professor Robert Ogilvie (MUSC Department of Cell Biology and Anatomy) when he introduced participants to a new digital technology that is revolutionizing histology and histopathology in the medical field. The Virtual Slide technology creates digital images of histological tissue sections by computer scanning actual slides in high definition and storing the images for retrieval and viewing. Virtual slides now allow any investigator with access to a computer and the web to view, search, annotate and comment on the same tissue sections in real time. Medical and veterinary slide libraries across the country are being converted into virtual slides to enhance biomedical education, research and diagnosis. The coral health and disease researchers at this workshop deem virtual slides as a significant way to increase capabilities in coral histology and a means for pathology consultations on coral disease cases on a global scale.

NOAA Technical Memorandum↗

USGS2025

Perfluorodecanesulfonate (PFDS) induces innate immune toxicity through the NF-κB pathway in early life stage zebrafish

Perfluorodecanesulfonate (PFDS), a long-chain polyfluoroalkyl substance (PFAS), is widely detected in aquatic environments and increasingly recognized for its environmental persistence and bioaccumulative potential; however, its immunotoxicity remains poorly understood in aquatic biota. In this study, early life stage zebrafish ( Danio rerio ) were exposed to environmentally relevant concentrations of PFDS and PFOS for 120 h to better characterize the adverse effects of PFDS on aquatic organisms. Additionally, the toxicological differences between PFDS and PFOS at the same exposure concentrations were compared, as PFDS is a known substitute for PFOS. PFDS bioaccumulated in zebrafish larvae at environmentally relevant concentrations, which disrupted immune function by altering the number of macrophages and neutrophils, inducing oxidative stress, and dysregulating immune markers such as interleukins and immunoglobulins. Mechanistically, PFDS activated the nuclear factor kappa B (NF-κB) signaling pathway, driving pro-inflammatory cytokine expression and immune dysfunction. Furthermore, the use of a NF-κB morpholino knockdown confirmed the role of the NF-κB pathway in mediating PFDS-induced immunotoxicity. These findings provide the first comprehensive evidence of PFDS-induced immunotoxicity being mediated through NF-κB activation, offering novel insights into the ecological risks of long-chain perfluorosulfonic acids. Notably, PFDS exhibited a stronger immunotoxic response relative to PFOS, indicating that its adverse effects may be more severe. Overall, these findings provide valuable insights for the ecological risk assessment of PFDS and the toxic potential that unregulated PFAS can have to aquatic systems.

Environment International↗

USGS2007

The National Assessment of Shoreline Change: A GIS compilation of vector cliff edges and associated cliff erosion data for the California coast

The U.S. Geological Survey has generated a comprehensive data clearinghouse of digital vector cliff edges and associated rates of cliff retreat along the open-ocean California coast. These data, which are presented herein, were compiled as part of the U.S. Geological Survey's National Assessment of Shoreline Change Project. Cliff erosion is a chronic problem along many coastlines of the United States. As coastal populations continue to grow and community infrastructures are threatened by erosion, there is increased demand for accurate information including rates and trends of coastal cliff retreat. There is also a critical need for these data to be consistent from one region to another. One objective of this work is to a develop standard, repeatable methodology for mapping and analyzing cliff edge retreat so that periodic, systematic, and internally consistent updates of cliff edge position and associated rates of erosion can be made at a national scale. This data compilation for open-ocean cliff edges for the California coast is a separate, yet related study to Hapke and others, 2006 documenting shoreline change along sandy shorelines of the California coast, which is itself one in a series that includes the Gulf of Mexico and the Southeast Atlantic coast (Morton and others, 2004; Morton and Miller, 2005). Future reports and data compilations will include coverage of the Northeast U.S., the Great Lakes, Hawaii and Alaska. Cliff edge change is determined by comparing the positions of one historical cliff edge digitized from maps with a modern cliff edge derived from topographic LIDAR (light detection and ranging) surveys. Historical cliff edges for the California coast represent the 1920s-1930s time-period; the most recent cliff edge was delineated using data collected between 1998 and 2002. End-point rate calculations were used to evaluate rates of erosion between the two cliff edges. Please refer to our full report on cliff edge erosion along the California coastline at http://pubs.usgs.gov/of/2007/1133/ for additional information regarding methods and results (Hapke and others, 2007). Data in this report are organized into downloadable layers by region (Northern, Central and Southern California) and are provided as vector datasets with accompanying metadata. Vector cliff edges may represent a compilation of data from one or more sources and the sources used are included in the dataset metadata. This project employs the Environmental Systems Research Institute's (ESRI) ArcGIS as it's Geographic Information System (GIS) mapping tool and contains several data layers (shapefiles) that are used to create a geographic view of the California coast. The vector data form a basemap comprising polygon and line themes that include a U.S. coastline (1:80,000), U.S. cities, and state boundaries.

California↗

USGS2013

Arsenic and mercury in the soils of an industrial city in the Donets Basin, Ukraine

Soil and house dust collected in and around Hg mines and a processing facility in Horlivka, a mid-sized city in the Donets Basin of southeastern Ukraine, have elevated As and Hg levels. Surface soils collected at a former Hg-processing facility had up to 1300 mg kg −1 As and 8800 mg kg −1 Hg; 1M HCl extractions showed 74–93% of the total As, and 1–13% of the total Hg to be solubilized, suggesting differential environmental mobility between these elements. In general, lower extractability of As and Hg was seen in soil samples up to 12 km from the Hg-processing facility, and the extractable (1M HCl, synthetic precipitation, deionized water) fractions of As are greater than those for Hg, indicating that Hg is present in a more resistant form than As. The means (standard deviation) of total As and Hg in grab samples collected from playgrounds and public spaces within 12 km of the industrial facility were 64 (±38) mg kg −1 As and 12 (±9.4) mg kg −1 Hg; all concentrations are elevated compared to regional soils. The mean concentrations of As and Hg in dust from homes in Horlivka were 5–15 times higher than dust from homes in a control city. Estimates of possible exposure to As and Hg through inadvertent soil ingestion are provided.

Donets Basin↗

USGS2015

Organic matter quantity and source affects microbial community structure and function following volcanic eruption on Kasatochi Island, Alaska

In August 2008, Kasatochi volcano erupted and buried a small island in pyroclastic deposits and fine ash; since then, microbes, plants and birds have begun to re-colonize the initially sterile surface. Five years post-eruption, bacterial 16S rRNA gene and fungal internal transcribed spacer (ITS) copy numbers and extracellular enzyme activity (EEA) potentials were one to two orders of magnitude greater in pyroclastic materials with organic matter (OM) inputs relative to those without, despite minimal accumulation of OM (< 0.2%C). When normalized by OM levels, post-eruptive surfaces with OM inputs had the highest β-glucosidase, phosphatase, NAGase and cellobiohydrolase activities, and had microbial population sizes approaching those in reference soils. In contrast, the strongest factor determining bacterial community composition was the dominance of plants versus birds as OM input vectors. Although soil pH ranged from 3.9 to 7.0, and %C ranged 100×, differentiation between plant- and bird-associated microbial communities suggested that cell dispersal or nutrient availability are more likely drivers of assembly than pH or OM content. This study exemplifies the complex relationship between microbial cell dispersal, soil geochemistry, and microbial structure and function; and illustrates the potential for soil microbiota to be resilient to disturbance.

Alaska↗

USGS2004

The National Assessment of Shoreline Change: A GIS Compilation of Vector Shorelines and Associated Shoreline Change Data for the U.S. Gulf of Mexico

Introduction The Coastal and Marine Geology Program of the U.S. Geological Survey has generated a comprehensive database of digital vector shorelines and shoreline change rates for the U.S. Gulf of Mexico. These data, which are presented herein, were compiled as part of the U.S. Geological Survey's National Assessment of Shoreline Change Project. Beach erosion is a chronic problem along most open-ocean shores of the United States. As coastal populations continue to grow and community infrastructures are threatened by erosion, there is increased demand for accurate information including rates and trends of shoreline migration. There is also a critical need for shoreline change data that is consistent from one coastal region to another. One purpose of this work is to develop standard repeatable methods for mapping and analyzing shoreline movement so that periodic updates regarding coastal erosion and land loss can be made nationally that are systematic and internally consistent. This data compilation for open-ocean, sandy shorelines of the Gulf of Mexico is the first in a series that will eventually include the Atlantic Coast, Pacific Coast, and parts of Hawaii and Alaska. Short- and long-term shoreline change evaluations are based on merging three historical shorelines with a modern shoreline derived from lidar (light detection and ranging) topographic surveys. Historical shorelines generally represent the following time periods: 1800s, 1920s-1930s, and 1970s. The most recent shoreline is derived from data collected over the period of 1998-2002. Long-term rates of change are calculated by linear regression using all four shorelines. Short-term rates of change are simple end-point rate calculations using the two most recent shorelines. Please refer to our full report on shoreline change in the Gulf of Mexico, National Assessment of Shoreline Change: Part 1, Historical Shoreline Changes and Associated Coastal Land Loss Along the U.S. Gulf of Mexico (USGS Open File Report 2004-1043) for additional information regarding methods and results. Data in this report are organized into data layers by state and are provided as single-point vector datasets with metadata. Vector shorelines may represent a compilation of data from one or more sources and these sources are attributed in the dataset. All data are intended to be GIS-ready inasmuch as the data should not require any additional cleanup, formatting, or renaming of fields in order to use the data in a Geographic Information System (GIS). This project employs the Environmental Systems Research Institute's (ESRI) ArcView as its GIS mapping tool and contains several data layers (or themes) that are used to create a geographic view of the margin off the U.S. Gulf of Mexico. These vector data form a basemap comprised of polygon and line themes that include a U.S. coastline (1:80,000), U.S. cities, and state boundaries.

Open-File Report↗

USGS2002

A 1500-year record of climatic and environmental change in Elk Lake, Clearwater County, Minnesota II: Geochemistry, mineralogy, and stable isotopes

Most of the sediment components that have accumulated in Elk Lake, Clearwater County, northwestern Minnesota, over the past 1500 years are authigenic or biogenic (CaCO3, biogenic SiO2, organic matter, iron and manganese oxyhydroxides, and iron phosphate) and are delivered to the sediment-water interface on a seasonal schedule where they are preserved as distinct annual laminae (varves). The annual biogeochemical cycles of these components are causally linked through the 'carbon pump', and are recapitulated in longer-term cycles, most prominently with a periodicity of about 400 years. Organic carbon is fixed in the epilimnion by photosynthetic removal of CO2, which also increases the pH, triggering the precipitation of CaCO3. The respiration and degradation of fixed organic carbon in the hypolimnion consumes dissolved oxygen, produces CO2, and lowers the pH so that the hypolimnion becomes anoxic and undersaturated with respect to CaCO3 during the summer. Some of the CaCO3 produced in the epilimnion is dissolved in the anoxic, lower pH hypolimnion and sediments. The amount of CaCO3 that is ultimately incorporated into the sediments is a function of how much is produced in the epilimnion and how much is consumed in the hypolimnion and the sediments. Iron, manganese, and phosphate accumulate in the anoxic hypolimnion throughout the summer. Sediment-trap studies show that at fall overturn, when iron-, manganese-, and phosphate-rich bottom waters mix with carbonate- and oxygen-rich surface waters, precipitation of iron and manganese oxyhydroxides, iron phosphate, and manganese carbonate begins and continues into the winter months. Detrital clastic material in the sediments of Elk Lake deposited over the last 1500 years is a minor component (<10% by weight) that is mostly wind-borne (eolian). Detailed analyses of the last 1500 years of the Elk Lake sediment record show distinct cycles in eolian clastic variables (e.g. aluminum, sodium, potassium, titanium, and quartz), with a periodicity of about 400 years. The 400-yr cycle in eolian clastic material does not correspond to the 400-yr cycles in redox-sensitive authigenic components, suggesting that the clastic component is responding to external forcing (wind) whereas the authigenic components are responding to internal forcing (productivity), although both may ultimately be forced by climate change. Variations in the oxygen and carbon isotopic composition of CaCO3 are small but appear to reflect small variations in ground water influx that are also driven by external forcing.

Journal of Paleolimnology↗

USGS2010

EAARL coastal topography-western Florida, post-Hurricane Charley, 2004: seamless (bare earth and submerged.

Project Description These remotely sensed, geographically referenced elevation measurements of lidar-derived seamless (bare-earth and submerged) topography were produced as a collaborative effort between the U.S. Geological Survey (USGS), Coastal and Marine Geology Program (CMGP), St. Petersburg, FL, and the National Aeronautics and Space Administration (NASA), Wallops Flight Facility, VA. This project provides highly detailed and accurate datasets of a portion of the western Florida coastline beachface, acquired post-Hurricane Charley on August 17 and 18, 2004. The datasets are made available for use as a management tool to research scientists and natural-resource managers. An innovative airborne lidar instrument originally developed at the NASA Wallops Flight Facility, and known as the Experimental Advanced Airborne Research Lidar (EAARL), was used during data acquisition. The EAARL system is a raster-scanning, waveform-resolving, green-wavelength (532-nanometer) lidar designed to map near-shore bathymetry, topography, and vegetation structure simultaneously. The EAARL sensor suite includes the raster-scanning, water-penetrating full-waveform adaptive lidar, a down-looking red-green-blue (RGB) digital camera, a high-resolution multispectral color infrared (CIR) camera, two precision dual-frequency kinematic carrier-phase GPS receivers, and an integrated miniature digital inertial measurement unit, which provide for sub-meter georeferencing of each laser sample. The nominal EAARL platform is a twin-engine Cessna 310 aircraft, but the instrument may be deployed on a range of light aircraft. A single pilot, a lidar operator, and a data analyst constitute the crew for most survey operations. This sensor has the potential to make significant contributions in measuring sub-aerial and submarine coastal topography within cross-environmental surveys. Elevation measurements were collected over the survey area using the EAARL system, and the resulting data were then processed using the Airborne Lidar Processing System (ALPS), a custom-built processing system developed in a NASA-USGS collaboration. ALPS supports the exploration and processing of lidar data in an interactive or batch mode. Modules for presurvey flight-line definition, flight-path plotting, lidar raster and waveform investigation, and digital camera image playback have been developed. Processing algorithms have been developed to extract the range to the first and last significant return within each waveform. ALPS is used routinely to create maps that represent submerged or sub-aerial topography. Specialized filtering algorithms have been implemented to determine the 'bare earth' under vegetation. For more information about similar projects, please visit the Decision Support for Coastal Science and Management website. Selected References Brock, J.C., Wright, C.W., Sallenger, A.H., Krabill, W.B., and Swift, R.N., 2002, Basis and methods of NASA airborne topographic mapper Lidar surveys for coastal studies: Journal of Coastal Research, v. 18, no. 1, p. 1-13. Crane, Michael, Clayton, Tonya, Raabe, Ellen, Stoker, Jason, Handley, Larry, Bawden, Gerald, Morgan, Karen, and Queija, Vivian, 2004, Report of the U.S. Geological Survey Lidar workshop sponsored by the Land Remote Sensing Program and held in St. Petersburg, FL, November 2002: U.S. Geological Survey Open-File Report 2004-1456, 72 p. Nayegandhi, Amar, Brock, J.C., and Wright, C.W., 2009, Small-footprint, waveform-resolving Lidar estimation of submerged and sub-canopy topography in coastal environments: International Journal of Remote Sensing, v. 30, no. 4, p. 861-878. Sallenger, A.H., Wright, C.W., and Lillycrop, Jeff, 2005, Coastal impacts of the 2004 hurricanes measured with airborne Lidar; initial results: Shore and Beach, v. 73, nos. 2-3, p. 10-14. Resources Included Readme.txt File

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USGS2004

Linking metal bioaccumulation of aquatic insects to their distribution patterns in a mining-impacted river

Although the differential responses of stream taxa to metal exposure have been exploited for bioassessment and monitoring, the mechanisms affecting these responses are not well understood. In this study, the subcellular partitioning of metals in operationally defined metal-sensitive and detoxified fractions were analyzed in five insect taxa. Samples were collected in two separate years along an extensive metal contamination gradient in the Clark Fork River (MT, USA) to determine if interspecific differences in the metal concentrations of metal-sensitive fractions and detoxified fractions were linked to the differences in distributions of taxa relative to the gradient. Most of the Cd, Cu, and Zn body burdens were internalized and potentially biologically active in all taxa, although all taxa appeared to detoxify metals (e.g., metal bound to cytosolic metal-binding proteins). Metal concentrations associated with metal-sensitive fractions were highest in the mayflies Epeorus albertae and Serratella tibialis , which were rare or absent from the most contaminated sites but occurred at less contaminated sites. Relatively low concentrations of Cu were common to the tolerant taxa Hydropsyche spp. and Baetis spp., which were widely distributed and dominant in the most contaminated sections of the river. This suggested that distributions of taxa along the contamination gradient were more closely related to the bioaccumulation of Cu than of other metals. Metal bioaccumulation did not appear to explain the spatial distribution of the caddisfly Arctopsyche grandis , considered to be a bioindicator of metal effects in the river. Thus, in this system the presence/absence of most of these taxa from sites where metal exposure was elevated could be differentiated on the basis of differences in metal bioaccumulation.

Montana↗